EP1194768A4 - METHODS FOR PEPTIDE CARTOGRAPHY OF POLYPEPTIDES, PROFILING OF PROFILES, AND BIOINFORMATIC DATABASE SYSTEM - Google Patents

METHODS FOR PEPTIDE CARTOGRAPHY OF POLYPEPTIDES, PROFILING OF PROFILES, AND BIOINFORMATIC DATABASE SYSTEM

Info

Publication number
EP1194768A4
EP1194768A4 EP00923511A EP00923511A EP1194768A4 EP 1194768 A4 EP1194768 A4 EP 1194768A4 EP 00923511 A EP00923511 A EP 00923511A EP 00923511 A EP00923511 A EP 00923511A EP 1194768 A4 EP1194768 A4 EP 1194768A4
Authority
EP
European Patent Office
Prior art keywords
cartography
profiling
polypeptides
peptide
profiles
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP00923511A
Other languages
German (de)
French (fr)
Other versions
EP1194768A1 (en
Inventor
Luke V Schneider
Michael P Hall
Robert Petesch
Jeffrey N Peterson
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Target Discovery Inc
Original Assignee
Target Discovery Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/513,395 external-priority patent/US6379971B1/en
Priority claimed from US09/513,907 external-priority patent/US6677114B1/en
Priority claimed from US09/513,486 external-priority patent/US6537432B1/en
Application filed by Target Discovery Inc filed Critical Target Discovery Inc
Priority to EP10180277A priority Critical patent/EP2293056A3/en
Publication of EP1194768A1 publication Critical patent/EP1194768A1/en
Publication of EP1194768A4 publication Critical patent/EP1194768A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848—Methods of protein analysis involving mass spectrometry
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416—Systems
    • G01N27/447—Systems using electrophoresis
    • G01N27/44704—Details; Accessories
    • G01N27/44717—Arrangements for investigating the separated zones, e.g. localising zones
    • G01N27/44721—Arrangements for investigating the separated zones, e.g. localising zones by optical means
    • G01N27/44726—Arrangements for investigating the separated zones, e.g. localising zones by optical means using specific dyes, markers or binding molecules
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416—Systems
    • G01N27/447—Systems using electrophoresis
    • G01N27/44756—Apparatus specially adapted therefor
    • G01N27/44773—Multi-stage electrophoresis, e.g. two-dimensional electrophoresis
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416—Systems
    • G01N27/447—Systems using electrophoresis
    • G01N27/44756—Apparatus specially adapted therefor
    • G01N27/44782—Apparatus specially adapted therefor of a plurality of samples
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416—Systems
    • G01N27/447—Systems using electrophoresis
    • G01N27/44756—Apparatus specially adapted therefor
    • G01N27/44795—Isoelectric focusing
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Engineering & Computer Science (AREA)
  • Electrochemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Hematology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Urology & Nephrology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biomedical Technology (AREA)
  • Microbiology (AREA)
  • Cell Biology (AREA)
  • Biotechnology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biophysics (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP00923511A 1999-04-20 2000-04-19 METHODS FOR PEPTIDE CARTOGRAPHY OF POLYPEPTIDES, PROFILING OF PROFILES, AND BIOINFORMATIC DATABASE SYSTEM Withdrawn EP1194768A4 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
EP10180277A EP2293056A3 (en) 1999-04-20 2000-04-19 A method for analysing a metabolic pathway

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US13023899P 1999-04-20 1999-04-20
US130238P 1999-04-20
US513907 2000-02-25
US09/513,395 US6379971B1 (en) 1998-02-24 2000-02-25 Methods for sequencing proteins
US09/513,907 US6677114B1 (en) 1999-04-20 2000-02-25 Polypeptide fingerprinting methods and bioinformatics database system
US513395 2000-02-25
US513486 2000-02-25
US09/513,486 US6537432B1 (en) 1998-02-24 2000-02-25 Protein separation via multidimensional electrophoresis
PCT/US2000/010504 WO2000063683A1 (en) 1999-04-20 2000-04-19 Polypeptide fingerprinting methods, metabolic profiling, and bioinformatics database

Publications (2)

Publication Number Publication Date
EP1194768A1 EP1194768A1 (en) 2002-04-10
EP1194768A4 true EP1194768A4 (en) 2008-03-26

Family

ID=27494844

Family Applications (2)

Application Number Title Priority Date Filing Date
EP00923511A Withdrawn EP1194768A4 (en) 1999-04-20 2000-04-19 METHODS FOR PEPTIDE CARTOGRAPHY OF POLYPEPTIDES, PROFILING OF PROFILES, AND BIOINFORMATIC DATABASE SYSTEM
EP10180277A Withdrawn EP2293056A3 (en) 1999-04-20 2000-04-19 A method for analysing a metabolic pathway

Family Applications After (1)

Application Number Title Priority Date Filing Date
EP10180277A Withdrawn EP2293056A3 (en) 1999-04-20 2000-04-19 A method for analysing a metabolic pathway

Country Status (6)

Country Link
EP (2) EP1194768A4 (en)
JP (2) JP4723725B2 (en)
AU (2) AU774662B2 (en)
CA (1) CA2370749A1 (en)
IL (1) IL146093A0 (en)
WO (1) WO2000063683A1 (en)

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MANN M ET AL: "ERROR-TOLERANT IDENTIFICATION OF PEPTIDES IN SEQUENCE DATABASES BY PEPTIDE SEQUENCE TAGS", ANALYTICAL CHEMISTRY, AMERICAN CHEMICAL SOCIETY. COLUMBUS, US, vol. 66, no. 24, 15 December 1994 (1994-12-15), pages 4390 - 4399, XP000573399, ISSN: 0003-2700 *
See also references of WO0063683A1 *

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JP2010249831A (en) 2010-11-04
AU774662B2 (en) 2004-07-01
JP2003529044A (en) 2003-09-30
EP2293056A3 (en) 2011-06-29
AU2004216642B2 (en) 2007-05-10
AU4362400A (en) 2000-11-02
AU2004216642A1 (en) 2004-10-28
IL146093A0 (en) 2002-07-25
EP1194768A1 (en) 2002-04-10
CA2370749A1 (en) 2000-10-26
JP4723725B2 (en) 2011-07-13

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