SG11201910046SA - Process for aligning targeted nucleic acid sequencing data - Google Patents
Process for aligning targeted nucleic acid sequencing dataInfo
- Publication number
- SG11201910046SA SG11201910046SA SG11201910046SA SG11201910046SA SG 11201910046S A SG11201910046S A SG 11201910046SA SG 11201910046S A SG11201910046S A SG 11201910046SA SG 11201910046S A SG11201910046S A SG 11201910046SA
- Authority
- SG
- Singapore
- Prior art keywords
- san diego
- california
- sequences
- illumina
- international
- Prior art date
Links
- 238000000034 method Methods 0.000 title abstract 4
- 108020004707 nucleic acids Proteins 0.000 title abstract 2
- 150000007523 nucleic acids Chemical class 0.000 title abstract 2
- 102000039446 nucleic acids Human genes 0.000 title abstract 2
- 238000012163 sequencing technique Methods 0.000 title abstract 2
- 239000003795 chemical substances by application Substances 0.000 abstract 2
- 108091093088 Amplicon Proteins 0.000 abstract 1
- 240000000662 Anethum graveolens Species 0.000 abstract 1
- 244000046052 Phaseolus vulgaris Species 0.000 abstract 1
- 235000010627 Phaseolus vulgaris Nutrition 0.000 abstract 1
- 238000013500 data storage Methods 0.000 abstract 1
- 230000008520 organization Effects 0.000 abstract 1
- 108090000623 proteins and genes Proteins 0.000 abstract 1
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Medical Informatics (AREA)
- Theoretical Computer Science (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Chemical & Material Sciences (AREA)
- Data Mining & Analysis (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Artificial Intelligence (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Epidemiology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201862614088P | 2018-01-05 | 2018-01-05 | |
| PCT/US2019/012511 WO2019136364A1 (en) | 2018-01-05 | 2019-01-07 | Process for aligning targeted nucleic acid sequencing data |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| SG11201910046SA true SG11201910046SA (en) | 2019-11-28 |
Family
ID=65433730
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| SG11201910046S SG11201910046SA (en) | 2018-01-05 | 2019-01-07 | Process for aligning targeted nucleic acid sequencing data |
Country Status (11)
| Country | Link |
|---|---|
| US (1) | US20190325990A1 (ko) |
| EP (1) | EP3616204B1 (ko) |
| JP (1) | JP7319197B2 (ko) |
| KR (1) | KR102858552B1 (ko) |
| CN (1) | CN110692101B (ko) |
| AU (1) | AU2019205780A1 (ko) |
| CA (1) | CA3061740A1 (ko) |
| IL (1) | IL270372B2 (ko) |
| NZ (1) | NZ759420A (ko) |
| SG (1) | SG11201910046SA (ko) |
| WO (1) | WO2019136364A1 (ko) |
Families Citing this family (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN110942809B (zh) * | 2019-11-08 | 2022-06-10 | 浪潮电子信息产业股份有限公司 | 一种序列比对的Seed处理方法、系统、装置及可读存储介质 |
| CN111261223B (zh) * | 2020-01-12 | 2022-05-03 | 湖南大学 | 一种基于深度学习的crispr脱靶效应预测方法 |
| KR20230022965A (ko) * | 2020-06-24 | 2023-02-16 | 주식회사 씨젠 | 복수의 핵산서열에 대한 올리고뉴클레오타이드 세트의 커버리지를 제공하는 컴퓨터-구현 방법 |
| CN111681711B (zh) * | 2020-06-28 | 2021-03-16 | 江苏先声医学诊断有限公司 | 一种兼并引物的设计筛选方法 |
| CN113241118A (zh) * | 2021-07-12 | 2021-08-10 | 法玛门多(常州)生物科技有限公司 | 一种基因突变有害性预测的方法 |
| KR102821587B1 (ko) * | 2022-01-28 | 2025-06-17 | 한국과학기술정보연구원 | 유전자 스크리닝 시퀀싱 데이터 맵핑 처리장치 및 그 장치에서 각 기능을 실행시키기 위해 매체에 저장된 컴퓨터 프로그램 |
| US20240296908A1 (en) * | 2022-03-28 | 2024-09-05 | Chengdu Boe Optoelectronics Technology Co., Ltd. | Method and apparatus for identifying fusion gene, device, program and storage medium |
| KR20240072026A (ko) * | 2022-11-16 | 2024-05-23 | 주식회사 세니젠 | 기준 서열 데이터와 타겟 및 비-타겟종의 교차검증을 활용한, PCR을 위한 K-mer 유전자 데이터 프로세싱 방법 및 그 장치 |
| CN115896256A (zh) * | 2022-11-25 | 2023-04-04 | 臻悦生物科技江苏有限公司 | 基于二代测序技术的rna插入缺失突变的检测方法、装置、设备和存储介质 |
| CN121420357A (zh) * | 2024-05-27 | 2026-01-27 | 京东方科技集团股份有限公司 | 预测扩增反应引物是否适用的方法及装置、存储介质 |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20160194694A1 (en) * | 2011-04-28 | 2016-07-07 | Life Technologies Corporation | Multiplex transcriptome analysis |
| US20160078168A1 (en) * | 2012-02-13 | 2016-03-17 | Splicingcodes.Com | Fusion transcript detection methods and fusion transcripts identified thereby |
| EP3092317B1 (en) * | 2014-01-10 | 2021-04-21 | Seven Bridges Genomics Inc. | Systems and methods for use of known alleles in read mapping |
| EP3169806B1 (en) * | 2014-07-18 | 2019-05-01 | Life Technologies Corporation | Systems and methods for detecting structural variants |
| CN104657628A (zh) * | 2015-01-08 | 2015-05-27 | 深圳华大基因科技服务有限公司 | 基于Proton的转录组测序数据的比较分析方法和系统 |
| US20170009304A1 (en) * | 2015-07-07 | 2017-01-12 | Splicingcodes.Com | Method and kit for detecting fusion transcripts |
| US10971249B2 (en) * | 2016-09-15 | 2021-04-06 | Illumina, Inc. | Systems and methods for off-target sequence detection |
-
2019
- 2019-01-07 WO PCT/US2019/012511 patent/WO2019136364A1/en not_active Ceased
- 2019-01-07 US US16/241,288 patent/US20190325990A1/en not_active Abandoned
- 2019-01-07 KR KR1020197035546A patent/KR102858552B1/ko active Active
- 2019-01-07 IL IL270372A patent/IL270372B2/en unknown
- 2019-01-07 CA CA3061740A patent/CA3061740A1/en active Pending
- 2019-01-07 NZ NZ759420A patent/NZ759420A/en not_active IP Right Cessation
- 2019-01-07 JP JP2019566247A patent/JP7319197B2/ja active Active
- 2019-01-07 AU AU2019205780A patent/AU2019205780A1/en not_active Abandoned
- 2019-01-07 CN CN201980002652.XA patent/CN110692101B/zh active Active
- 2019-01-07 SG SG11201910046S patent/SG11201910046SA/en unknown
- 2019-01-07 EP EP19705421.6A patent/EP3616204B1/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| IL270372A (ko) | 2019-12-31 |
| IL270372B2 (en) | 2025-09-01 |
| JP7319197B2 (ja) | 2023-08-01 |
| CN110692101B (zh) | 2024-01-26 |
| CA3061740A1 (en) | 2019-07-11 |
| KR20200107774A (ko) | 2020-09-16 |
| AU2019205780A1 (en) | 2019-12-12 |
| WO2019136364A1 (en) | 2019-07-11 |
| IL270372B1 (en) | 2025-05-01 |
| US20190325990A1 (en) | 2019-10-24 |
| JP2021509572A (ja) | 2021-04-01 |
| KR102858552B1 (ko) | 2025-09-10 |
| EP3616204B1 (en) | 2024-07-17 |
| CN110692101A (zh) | 2020-01-14 |
| EP3616204C0 (en) | 2024-07-17 |
| NZ759420A (en) | 2022-07-01 |
| EP3616204A1 (en) | 2020-03-04 |
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