WO1991013075A3 - Method and reagent for determining specific nucleotide variations - Google Patents

Method and reagent for determining specific nucleotide variations Download PDF

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Publication number
WO1991013075A3
WO1991013075A3 PCT/FI1991/000046 FI9100046W WO9113075A3 WO 1991013075 A3 WO1991013075 A3 WO 1991013075A3 FI 9100046 W FI9100046 W FI 9100046W WO 9113075 A3 WO9113075 A3 WO 9113075A3
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WO
WIPO (PCT)
Prior art keywords
detection step
incorporation
variable nucleotide
reagent
primer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/FI1991/000046
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French (fr)
Other versions
WO1991013075A2 (en
Inventor
Hans Soederlund
Ann-Christine Syvaenen
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Orion Oyj
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Orion Yhtyma Oy
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Publication date
Priority to DE69131233T priority Critical patent/DE69131233T2/en
Priority to DE0648280T priority patent/DE648280T1/en
Priority to CA002071537A priority patent/CA2071537C/en
Priority to DK91903942T priority patent/DK0648280T3/en
Priority to EP91903942A priority patent/EP0648280B1/en
Application filed by Orion Yhtyma Oy filed Critical Orion Yhtyma Oy
Publication of WO1991013075A2 publication Critical patent/WO1991013075A2/en
Publication of WO1991013075A3 publication Critical patent/WO1991013075A3/en
Priority to NO19923116A priority patent/NO311529B1/en
Priority to FI923653A priority patent/FI102297B/en
Anticipated expiration legal-status Critical
Priority to GR950300047T priority patent/GR950300047T1/en
Priority to GR990401879T priority patent/GR3030790T3/en
Ceased legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6858Allele-specific amplification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701Specific hybridization probes
    • C12Q1/702Specific hybridization probes for retroviruses
    • C12Q1/703Viruses associated with AIDS
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Virology (AREA)
  • Pathology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • AIDS & HIV (AREA)
  • Cell Biology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Heterocyclic Carbon Compounds Containing A Hetero Ring Having Oxygen Or Sulfur (AREA)
  • Measuring Pulse, Heart Rate, Blood Pressure Or Blood Flow (AREA)
  • Investigating Or Analyzing Non-Biological Materials By The Use Of Chemical Means (AREA)
  • Compositions Of Macromolecular Compounds (AREA)
  • Saccharide Compounds (AREA)
  • Nitrogen And Oxygen Or Sulfur-Condensed Heterocyclic Ring Systems (AREA)

Abstract

Detection of variable nucleotide(s) is based on primer extension and incorporation of detectable nucleoside triphosphates. By selecting the detection step primers from the region immediately adjacent to the variable nucleotide, this variation can be detected after incorporation of as few as one nucleoside triphosphate. Labelled nucleoside triphosphates matching the variable nucleotide are added and the incorporation of a label into the detection step primer is measured. The selection of the detection step primer is important to the method according to this invention and is dependent on the nucleotide sequence of interest. The detection step primers are preferably selected so to span the region immediately toward the 3' end from the variable nucleotide to be detected. The method is useful in identifying specific point mutations and genetic variations.
PCT/FI1991/000046 1990-02-16 1991-02-15 Method and reagent for determining specific nucleotide variations Ceased WO1991013075A2 (en)

Priority Applications (9)

Application Number Priority Date Filing Date Title
DE69131233T DE69131233T2 (en) 1990-02-16 1991-02-15 METHOD AND REAGENT FOR DETECTING SPECIFIC NUCLEOTIDE VARIATIONS
DE0648280T DE648280T1 (en) 1990-02-16 1991-02-15 METHOD AND REAGENT FOR DETECTING SPECIFIC NUCLEOTIDE VARIATIONS.
CA002071537A CA2071537C (en) 1990-02-16 1991-02-15 Method and reagent for determining specific nucleotide variations
DK91903942T DK0648280T3 (en) 1990-02-16 1991-02-15 Methods and Reagents for Determining Specific Nucleotide Variations
EP91903942A EP0648280B1 (en) 1990-02-16 1991-02-15 Method and reagent for determining specific nucleotide variations
NO19923116A NO311529B1 (en) 1990-02-16 1992-08-10 Method and Reagent for Determining Specific Nucleotide Variations
FI923653A FI102297B (en) 1990-02-16 1992-08-14 Method and Reagents for Determining Specific Nucleotide Variations
GR950300047T GR950300047T1 (en) 1990-02-16 1995-07-31 Method and reagent for determining specific nucleotide variations.
GR990401879T GR3030790T3 (en) 1990-02-16 1999-07-14 Method and reagent for determining specific nucleotide variations.

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US48200590A 1990-02-16 1990-02-16
US482,005 1990-02-16

Publications (2)

Publication Number Publication Date
WO1991013075A2 WO1991013075A2 (en) 1991-09-05
WO1991013075A3 true WO1991013075A3 (en) 1991-10-17

Family

ID=23914258

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/FI1991/000046 Ceased WO1991013075A2 (en) 1990-02-16 1991-02-15 Method and reagent for determining specific nucleotide variations

Country Status (18)

Country Link
EP (1) EP0648280B1 (en)
JP (1) JP2786011B2 (en)
AT (1) ATE180019T1 (en)
AU (1) AU642709B2 (en)
CA (1) CA2071537C (en)
DE (2) DE648280T1 (en)
DK (1) DK0648280T3 (en)
ES (1) ES2072235T3 (en)
FI (1) FI102297B (en)
GR (2) GR950300047T1 (en)
HU (1) HU211058B (en)
IE (1) IE910525A1 (en)
IL (1) IL97222A (en)
NO (1) NO311529B1 (en)
NZ (1) NZ237134A (en)
PT (1) PT96776B (en)
WO (1) WO1991013075A2 (en)
ZA (1) ZA911152B (en)

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US6949633B1 (en) 1995-05-22 2005-09-27 Sequenom, Inc. Primers useful for sizing nucleic acids
US6982431B2 (en) 1998-08-31 2006-01-03 Molecular Devices Corporation Sample analysis systems
US7056669B2 (en) 1996-11-05 2006-06-06 Clinical Micro Sensors, Inc. AC methods for the detection of nucleic acids
US7070921B2 (en) 2000-04-28 2006-07-04 Molecular Devices Corporation Molecular modification assays
US7074563B2 (en) 1995-03-17 2006-07-11 Sequenom, Inc. Mass spectrometric methods for detecting mutations in a target nucleic acid
US7125668B2 (en) 1996-11-05 2006-10-24 Clinical Micro Sensors, Inc. Electrodes linked via conductive oligomers to nucleic acids
US7198893B1 (en) 1996-11-06 2007-04-03 Sequenom, Inc. DNA diagnostics based on mass spectrometry
US7329496B2 (en) 1990-12-06 2008-02-12 Affymetrix, Inc. Sequencing of surface immobilized polymers utilizing microflourescence detection
US7384749B2 (en) 1996-11-05 2008-06-10 Clinical Micro Sensors, Inc. Electrodes linked via conductive oligomers to nucleic acids
US7432342B2 (en) 2002-05-03 2008-10-07 Sequenom, Inc. Kinase anchor protein muteins, peptides thereof and related documents
US7632651B2 (en) 1997-09-15 2009-12-15 Mds Analytical Technologies (Us) Inc. Molecular modification assays
US7851146B2 (en) 1993-12-10 2010-12-14 California Institute Of Technology Nucleic acid mediated electron transfer
USRE44693E1 (en) 1996-11-06 2014-01-07 Sequenom, Inc. Beads bound to a solid support and to nucleic acids
US9109256B2 (en) 2004-10-27 2015-08-18 Esoterix Genetic Laboratories, Llc Method for monitoring disease progression or recurrence
US9243284B2 (en) 2000-12-01 2016-01-26 Life Technologies Corporation Enzymatic nucleic acid synthesis: compositions and methods for inhibiting pyrophosphorolysis
US9279148B2 (en) 1999-04-20 2016-03-08 Illumina, Inc. Detection of nucleic acid reactions on bead arrays
US9588051B2 (en) 2004-09-17 2017-03-07 Pacific Biosciences Of California, Inc. Apparatus and method for performing nucleic acid analysis

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WO1992016180A2 (en) * 1991-03-13 1992-10-01 Siska Diagnostics, Inc. Detection of 3'-azido-3'-deoxythymidine resistance
US7026115B1 (en) 1991-09-24 2006-04-11 Keygene N.V. Selective restriction fragment amplification: fingerprinting
US20100267023A1 (en) 1992-09-24 2010-10-21 Keygene N.V. Selective restriction fragment amplification: fingerprinting
GB9208000D0 (en) * 1992-04-10 1992-05-27 Univ London Quantitative viral assay
US5750335A (en) * 1992-04-24 1998-05-12 Massachusetts Institute Of Technology Screening for genetic variation
ATE198358T1 (en) * 1992-04-27 2001-01-15 Dartmouth College DETECTION OF GENE SEQUENCES IN BIOLOGICAL LIQUIDS
GB9210176D0 (en) * 1992-05-12 1992-06-24 Cemu Bioteknik Ab Chemical method
US5981176A (en) * 1992-06-17 1999-11-09 City Of Hope Method of detecting and discriminating between nucleic acid sequences
CA2115342C (en) * 1992-06-17 2003-08-26 Robert B. Wallace A method of detecting and discriminating between nucleic acid sequences
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US5710028A (en) * 1992-07-02 1998-01-20 Eyal; Nurit Method of quick screening and identification of specific DNA sequences by single nucleotide primer extension and kits therefor
ATE231881T1 (en) * 1992-07-02 2003-02-15 Savyon Diagnostics Ltd METHOD FOR SIMPLE NUCLEOTIDE PRIMER EXTENSION FOR DETECTING SPECIFIC ALLELES AND KIT SUITABLE THEREFOR
US6153379A (en) * 1993-06-22 2000-11-28 Baylor College Of Medicine Parallel primer extension approach to nucleic acid sequence analysis
US7001722B1 (en) 1993-06-22 2006-02-21 Baylor College Of Medicine Parallel primer extension approach to nucleic acid sequence analysis
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Cited By (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7329496B2 (en) 1990-12-06 2008-02-12 Affymetrix, Inc. Sequencing of surface immobilized polymers utilizing microflourescence detection
US7851146B2 (en) 1993-12-10 2010-12-14 California Institute Of Technology Nucleic acid mediated electron transfer
US7419787B2 (en) 1995-03-17 2008-09-02 Sequenom, Inc. Mass spectrometric methods for detecting mutations in a target nucleic acid
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ES2072235T3 (en) 1999-07-16
ATE180019T1 (en) 1999-05-15
GR950300047T1 (en) 1995-07-31
AU642709B2 (en) 1993-10-28
EP0648280A1 (en) 1995-04-19
NO923116L (en) 1992-08-10
NO311529B1 (en) 2001-12-03
WO1991013075A2 (en) 1991-09-05
NZ237134A (en) 1992-06-25
DE648280T1 (en) 1995-11-30
IL97222A0 (en) 1992-05-25
CA2071537A1 (en) 1991-08-17
FI102297B1 (en) 1998-11-13
JPH05504477A (en) 1993-07-15
FI923653A0 (en) 1992-08-14
EP0648280B1 (en) 1999-05-12
GR3030790T3 (en) 1999-11-30
NO923116D0 (en) 1992-08-10
HU211058B (en) 1995-10-30
IE910525A1 (en) 1991-08-28
ES2072235T1 (en) 1995-07-16
ZA911152B (en) 1991-11-27
DK0648280T3 (en) 1999-11-01
CA2071537C (en) 2003-02-11
PT96776B (en) 1998-05-29
FI102297B (en) 1998-11-13
DE69131233T2 (en) 1999-11-04
IL97222A (en) 1995-08-31
FI923653L (en) 1992-08-14
HU910516D0 (en) 1991-09-30
PT96776A (en) 1991-10-31
DE69131233D1 (en) 1999-06-17
AU7235191A (en) 1991-09-18
HUT61330A (en) 1992-12-28
JP2786011B2 (en) 1998-08-13

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