WO1993024134A1 - Treatment of cellular hyperproliferation by inhibition of interleukin-1 - Google Patents
Treatment of cellular hyperproliferation by inhibition of interleukin-1 Download PDFInfo
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- WO1993024134A1 WO1993024134A1 PCT/US1993/004917 US9304917W WO9324134A1 WO 1993024134 A1 WO1993024134 A1 WO 1993024134A1 US 9304917 W US9304917 W US 9304917W WO 9324134 A1 WO9324134 A1 WO 9324134A1
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- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H15/00—Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
- C12N15/1136—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against growth factors, growth regulators, cytokines, lymphokines or hormones
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- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/31—Chemical structure of the backbone
- C12N2310/312—Phosphonates
- C12N2310/3125—Methylphosphonates
Definitions
- the present invention is directed to methods of treatment of cellular hyperproliteration. These methods are useful in the treatment of various pathologic con- ditions characterized by over-proliferation of cells, especially epithelial cells and, more particularly, keratinocytes.
- the present invention provides methods of preventing or decreasing hyperproliferation of cells, particularly epithelial cells, by inhibiting or decreasing inhibition of Interleukin-1 ("IL-l") activity or intracellular Inter- leukin-1 receptor antagonist activity.
- the present invention is directed to such methods which comprise con ⁇ tacting the cells with a hyperproliferation inhibiting amount of an Interleukin-1 inhibitory compound.
- Inter- leukin-1 inhibitory compounds include compounds which decrease Interleukin-1 or intracellular Interleukin-1 receptor antagonist activity.
- Interleukin-1 activity is inhibited by inhibiting or down- regulating its synthesis.
- Interleukin-1 activity is inhibited by inhibiting conver ⁇ sion of a precursor form into an active form.
- Interleukin-1 inhibitory compounds include Oligomer ⁇ (such as antisense Oligomers, Third Strand Oligomers or Triplex Oligomer Pairs) which regulate expression of an Interleukin-1, an Interleukin-1 modulating factor, or an Interleukin-1 converting enzyme.
- Interleukin-1 modulating factors include compounds which modulate Interleukin-1 activity and include, for example, compounds such as intracellular Interleukin-1 receptor antagonist.
- Interleukin-1 inhibitory compounds may be selected from a variety of classes of compounds which decrease activity levels of Interleukin-1 or intracellular Interleukin-1 receptor antagonist in the targeted (i.e., hyperprolifer- ating) cells.
- the present inven ⁇ tion is directed to methods of treating pathologic condi ⁇ tions characterized by hyperproliferation of skin or epithelial cells by contacting skin or epithelial cells with a proliferation-inhibiting amount of Oligomer(s) .
- the Oligomer may be an antisense Oligomer, a Third Strand Oligomer or a Triplex Oligomer.
- Such an antisense Oligo- mer has a sequence complementary to a sequence of RNA transcribed from a target gene present in the cells.
- a Triple Strand Oligomer has a sequence complementary to a selected double stranded nucleic acid sequence of a target gene present in the cells.
- a Triplex Oligomer Pair is complementary to a single stranded nucleic acid sequence of a target gene or its transcription product.
- the target gene is selected from those genes which encode a cytokine which mediates cellular proliferation or a modulating fac ⁇ tor (such as a receptor antagonist) thereof or a convert- ing enzyme therefor.
- the present invention is directed to methods of decreasing or preventing hyperproliferation of skin or epithelial cells by contacting the cells with a hyperproliferation- inhibiting amount of an Oligomer which comprises an antisense Oligomer, a Triple Strand Oligomer or a Triplex Oligomer Pair.
- the Oligomer has a sequence complementary to a nucleic acid sequence from a target gene present in the cells or transcription product.
- the target gene is selected from those genes encoding cytokines which mediate cellular proliferation, or a modulating factor such as a receptor antagonist for such a cytokine, or a converting enzyme, or an enzyme involved in translational or post- translational modification of the cytokine that is criti- cal for its function.
- Preferred target genes include those which encode Interleukin-18 ("IL-13 M ) , Interleukin-l ⁇ ("IL-l ⁇ ”), intracellular Interleukin-1 receptor antagonist ("icIL- lra” or “intracellular IL-lra”), or an Interleukin-1 converting enzyme. Definitions
- purine or “purine base” includes not only the naturally occurring adenine and guanine bases, but also modifications of those bases such as bases substi ⁇ tuted at the 8- position, or to the guanine analogs modi ⁇ fied at the 6-position or the analog of adenine, 2-amino purine.
- nucleoside includes a nucleosidyl unit and is used interchangeably therewith, and refers to a subunit of a nucleic acid which comprises a 5 carbon sugar and a nitrogen- containing base.
- the term includes not only units having A, G, C, T and U as their bases, but also analogs and modified forms of the bases (such as 8-sub- stituted purines) .
- RNA the 5 carbon sugar is ribose; in DNA, it is a 2' -deoxyribose.
- the term also includes analogs of such subunits, including modified sugars such as 2'-0-alkyl ribose.
- R is an alkyl or aryl group.
- Suitable alkyl or aryl groups include those which do not sterically hinder the phosphonate linkage or interact with each other.
- the phosphonate group may exist in either an "R” or an "S” configuration.
- Phosphonate groups may be used as inter- nucleosidyl phosphorus group linkages (or links) to con ⁇ nect nucleosidyl units.
- phosphodiester groups may be used as internucleo- sidyl phosphorus group linkages (or links) to connect nucleosidyl units.
- non-nucleoside monomeric unit refers to a mono- meric unit wherein the base, the sugar and/or the phos ⁇ phorus backbone has been replaced by other chemical moieties.
- nucleoside/non-nucleoside polymer refers to a polymer comprised of nucleoside and non-nucleoside mono- meric units.
- oligonucleoside or “Oligomer” refers to a chain of nucleosides which are linked by internucleoside linkages which is generally from about 6 to about 100 nucleosides in length, but which may be greater than about 100 nucleosides in length. They are usually synthesized form nucleoside monomers, but may also be obtained by enzymatic means.
- the term "Oligomer” refers to a chain of oligonucleosides which have internucleosidyl linkages linking the nucleoside monomers and, thus, includes oligonucleotides, nonionic oligonucleoside alkyl- and aryl-phosphonate analogs, alkyl- and aryl-phosphono- thioates, phosphorothioate or phosphorodithioate analogs of oligonucleotides, phosphoramidate analogs of oligo ⁇ nucleotides, neutral phosphate ester oligonucleoside analogs, such as phosphotriesters and other oligonucleo ⁇ side analogs and modified oligonucleosides, and also includes nucleoside/non-nucleoside polymers.
- nucleoside/nucleotide polymers wherein one or more of the phosphorus group linkages between monomeric units has been replaced by a non-phosphorous linkage such as a formacetal linkage, a sulfamate linkage, or a carba- mate linkage. It also includes nucleoside/non-nucleoside polymers wherein both the sugar and the phosphorous moiety have been replaced or modified such as morpholino base analogs, or polyamide base analogs.
- nucleoside/non-nucleoside polymers wherein the base, the sugar, and the phosphate backbone of the non-nucleoside are either replaced by a non-nucleoside moiety or wherein a non-nucleoside moiety is inserted into the nucleoside/ non-nucleoside polymer.
- said non-nucleoside moiety may serve to link other small molecules which may interact with target sequences or alter uptake into target cells.
- alkyl- or aryl-phosphonate Oligomer refers to Oligomers having at least one alkyl- or aryl-phospho ⁇ nate internucleosidyl linkage.
- Suitable alkyl- or aryl- phosphonate groups include alkyl- or aryl- groups which do not sterically hinder the phosphonate linkage or interact with each other.
- Preferred alkyl groups include lower alkyl groups having from about 1 to about 6 carbon atoms.
- Suitable aryl groups have at least one ring having a con- jugated pi electron system and include carbocyclic aryl and heterocyclic aryl groups, which may be optionally substituted and preferably having up to about 10 carbon atoms.
- methylphosphonate Oligomer (or “MP- Oligomer”) refers to Oligomers having at least one methylphosphonate internucleosidyl linkage.
- neutral Oligomer refers to Oligomers which have nonionic internucleosidyl linkages between nucleoside monomers (i.e., linkages having no net positive or nega- tive ionic charge) and include, for example, Oligomers having internucleosidyl linkages such as alkyl- or aryl- phosphonate linkages, alkyl- or aryl-phosphonothioates, neutral phosphate ester linkages such as phosphotriester linkages, especially neutral ethyltriester linkages; and non-phosphorus-containing internucleosidyl linkages, ⁇ such as sulfamate, morpholino, formacetal, and carbamate link ⁇ ages.
- a neutral Oligomer may comprise a conjugate between an oligonucleoside or nucleoside/non- nucleoside polymer and a second molecule which comprises a conjugation partner.
- conjugation partners may comprise intercalators, alkylating agents, binding sub ⁇ stances for cell surface receptors, lipophilic agents, nucleic acid modifying groups including photo-cross- linking agents such as psoralen and groups capable of cleaving a targeted portion of a nucleic acid, and the like.
- conjugation partners may further enhance the uptake of the Oligomer, modify the interaction of the Oligomer with the target sequence, or alter the pharmaco- kinetic distribution of the Oligomer.
- the essential requirement is that the oligonucleoside or nucleoside/non- nucleoside polymer that the Oligomer conjugate comprises be neutral.
- neutral alkyl- or aryl- phosphonate Oligo ⁇ mer refers to neutral Oligomers having neutral inter ⁇ nucleosidyl linkages which comprise at least one alkyl- or aryl- phosphonate linkage.
- neutral methylphosphonate Oligomer refers to neutral Oligomers having internucleosidyl linkages which comprise at least one methylphosphonate linkage.
- tandem oligonucleotide or “tandem Oligo ⁇ mer” refers to an oligonucleotide or Oligomer which is complementary to a sequence located either on the 5'- or 3' - side of a target nucleic acid sequence and which is co-hybridized with a second Oligomer which is complemen ⁇ tary to the target sequence. Tandem Oligomers may improve hybridization of these Oligomers to the target by helping to make the target sequence more accessible to such Oligo ⁇ mers, such as by decreasing the secondary structure of the target nucleic acid sequence.
- one member of a pair of tandem Oligomers may improve the hybrid stabil ⁇ ity of the second tandem Oligomer to the target nucleic acid sequence by promoting a helical structure at either the 5'- or 3'-end of said second Oligomer and vice-versa.
- short chain aliphatic alcohol refers to an alcohol having from about 2 to about 20 carbon atoms in which the aliphatic (alkyl) chain may be either straight chained or branch chained and includes primary, secondary and tertiary alcohols, glycols and polyols.
- flux enhancer refers to a substance which is used to increase transdermal flux of a compound. A flux enhancer is typically applied to skin or mucous mem ⁇ brane in combination with the compound to increase trans- dermal flux of the compound. Enhancers are believed to function by disrupting the skin or mucous membrane barrier or by changing the partitioning behavior of the drug in the skin or mucous membrane.
- Triplex Oligomer Pair refers to first and second Oligomers which are complementary to and which are capable of hydrogen bonding to a segment of a single stranded target nucleic acid, such as RNA or DNA, and, thus, together with the single stranded target nucleic acid are capable of forming a triple helix structure therewith.
- Third Strand Oligomer refers to Oligomers which are capable of hybridizing to a segment of a double stranded nucleic acid, such as a DNA duplex, an RNA duplex or a DNA-RNA duplex, and forming a triple helix structure therewith.
- triplex Oligomer Pair or first and second Oligomers
- Third Strand Oligomer refers to Oligomers having base sequences which hydrogen bond (and base pair or hybridize) with the base sequence of the nucleic acid to form a triple helix structure.
- conditions char ⁇ acterized by hyperproliferation of cells, especially epi- thelial cells, are treated using a hyperproliferation inhibiting amount of an Interleukin-1 inhibitory compound.
- Interleukin-1 inhibitory compounds include compounds which decrease Interleukin-1 or intracellular Interleukin-1 receptor antagonist activity.
- Suitable Interleukin-1 inhibitory compounds include compounds which inhibit or decrease expression of a Interleukin-1, an Interleukin-1 modulating factor, such as intracellular Interleukin-1 receptor antagonist, or an enzyme which converts an IL-l precursor to an active form ("converting enzyme") and, thus, includes peptides, competitive or non-competitive inhibitors for converting enzymes, small molecule inhibi ⁇ tors, antibodies, Oligomers which bind to a protein's active site to modulate its function, or Oligomers such as antisense Oligomers, Third Strand Oligomers and Triplex Oligomer Pairs. Suitable nucleoside sequences for these Oligomers may be determined from the sequences of target genes. Preferred sequences of the target region are described herein below.
- Interleukin-1 inhibitory compounds include compounds which inhibit a converting enzyme and, thus, prevent conversion of an IL-l precursor into an active form.
- Other Interleukin-1 inhi ⁇ bitory compounds include compounds which decrease intra ⁇ cellular Interleukin-1 receptor antagonist activity.
- the Oligomer selected may be any of a number of types, including those having a charged or uncharged backbone.
- Preferred Oligomers include alkyl- and aryl-phos ⁇ phonate Oligomers, especially preferred are methylphos ⁇ phonate Oligomers.
- Other preferred Oligomers include phosphorothioate Oligomers, morpholino analogs, formacetal analogs and peptide nucleic acid ("PNA") analogs.
- Suitable Oligomers also include chimeric oligonucleotides which are composite RNA, DNA analogues (Inoue et al., FEBS Lett. 2115.:327 (1987)). Oligomers having a neutral backbone, for exam ⁇ ple, methylphosphonate Oligomers with cleaving or cross- linking moieties attached, may prove advantageous in certain circumstances; such Oligomers may have a longer half-life in vivo since the neutral structure reduces the rate of nuclease digestion while the cleaving or cross- linking moiety may promote inactivation of target poly- nucleotide sequences.
- these antisense Oligomers have a sequence which is com ⁇ plementary to a portion of the RNA transcribed from the selected target gene.
- the exact molecular mech ⁇ anism of inhibition has not been conclusively determined, it has been suggested to result from formation of duplexes between the antisense Oligomer and the RNA transcribed from the target gene.
- the duplexes so formed may inhibit translation, processing or transport of an mRNA sequence or may lead to digestion by the enzyme RNaseH.
- down regulation of cellular proliferation may be accomplished by triple helix formation using a Third Strand Oligomer or a Triplex Oligomer Pair having sequences selected such that the Oligomer(s) are comple- mentary to and form a triple helix complex with a target sequence of double stranded or single stranded nucleic acid and thereby interfere with or prevent expression of the targeted nucleic acid sequence.
- the Oligomer employed will have a sequence that is complementary to the sequence of the target nucleic acid. However, absolute complementarity may not be required; in general, any Oligomer having sufficient complementarity to form a stable duplex (or triple helix complex as the case may be) with the target nucleic acid is considered to be suitable. Since stable duplex formation depends on the sequence and length of the hybridizing Oligomer and the degree of complementarity between the antisense Oligomer and the target sequence, the system can tolerate less fidelity (complementarity) when longer Oligomers are used. This is also true with Oligomers which form triple helix complexes.
- Oligomers of about 8 to about 40 nucleosidyl units in length which have sufficient complementarity to form a duplex or triple helix structure having a melting tem ⁇ perature of greater than about 40°C under physiological conditions are particularly suitable for use according to the methods of the present invention.
- the concentration of Oligomer used may vary, depend- ing upon a number of factors, including the type of hyper- proliferative condition to be treated, the tissue to be treated (i.e., whether administered locally or systemic- ally) , the type and the specificity of the particular antisense Oligomer selected.
- the studies described herein have observed significant inhibition in the test systems used at concentrations in the 50 ⁇ M range; however, under other conditions, higher or lower concentrations of Oligo ⁇ mer may be preferred.
- Oligomers are to be adminis ⁇ tered parenterally, such as by injection, either neutral Oligomers or Oligomers having an ionically charged back ⁇ bone (i.e.. having charged internucleosidyl linkages) may be used.
- these Oligomers may comprise a conjugate between a polynucleoside or nucleoside/non-nucleoside polymer and a conjugation part ⁇ ner.
- Suitable conjugation partners include intercalating agents such as acridine, alkylating agents, binding sub ⁇ stances for cell surface receptors, lipophilic agents, photo-crosslinking agents such as psoralen, other cross- linking agents, pro-chelates, or nucleic acid modifying agents, including groups capable of cleaving a targeted portion of a nucleic acid such as hydrolytic or nucleo- lytic agents like o-phenanthroline copper or EDTA-iron, all of which may be incorporated in the Oligomers.
- Conjugation partners may also be introduced into the Oligomer by the incorporation of modified nucleosides or nucleoside analogs through the use of enzymes or by chem ⁇ ical modification of the Oligomer, for example, by the use of non-nucleotide linker groups.
- these Oligomers When used to prevent function or expression of a single or double stranded nucleic acid sequence, these Oligomers may be advantageously derivatized or modified to incorporate a nucleic acid modifying group which may be caused to react with said nucleic acid and irreversibly modify its structure, thereby rendering it non-functional.
- nucleic acid modifying groups include groups which, after the derivatized Oligomer forms a complex which a single stranded or double stranded nucleic acid segment, may be caused to cross-link, alkyl- ate, cleave, degrade, or otherwise inactivate or destroy the nucleic acid segment or a target sequence portion thereof, and thereby irreversibly inhibit the function and/or expression of that nucleic acid segment.
- the location of the nucleic acid modifying groups in the Oligomer may be varied and may depend on the parti ⁇ cular nucleic acid modifying group employed and the tar ⁇ geted nucleic acid segment. Accordingly, the nucleic acid modifying group may be positioned at the end of the Oligo- mer or intermediate between the ends. A plurality of nucleic acid modifying groups may be included. In one preferred aspect, the nucleic acid modifying group is photoreactable (e.g., activated by a particular wavelength, or range of wavelengths of light) , so as to cause reaction and, thus, cross-linking between the Oligo- mer and the nucleic acid target.
- photoreactable e.g., activated by a particular wavelength, or range of wavelengths of light
- nucleic acid modifying groups which may cause cross-linking are the psoralens, such as an amino- methyltrimethyl psoralen group (AMT) .
- AMT amino- methyltrimethyl psoralen group
- Other cross-linking groups which may or may not be photoreactable may be used to derivatize these Oligomers.
- the nucleic acid modifying groups may comprise an alkylating agent group which is covalently bonded to the nucleic acid segment to render it inactive.
- alkylating agent groups are known in the chemical arts and include groups derived from alkyl halides, halo- acetamides and the like.
- Polynucleotide modifying groups which may be caused to cleave the polynucleotide segment include moieties which generate radicals, as well as moieties, which promote hydrolysis through nucleophilic attack. Transition metal chelating complexes, such as ethylenediaminetetraacetate (EDTA) or a neutral derivative thereof, can be used to generate radicals.
- EDTA ethylenediaminetetraacetate
- cleavage agents include nucleo ⁇ philic agents and hydrolytic agents that promote the addi- tion of water at the phosphorus internucleotide linkages. Such agents include amines, substituted guanidinium groups, imidazole groups and the like.
- Preferred neutral Oligomers include neutral alkyl- and aryl- phosphonate Oligomers and neutral Oligomers comprising morpholino or phosphoramidate linkages. Especially preferred are neutral methylphosphonate Oligomers. In view of their demonstrated ability to penetrate skin, including tape stripped skin, (which has had the stratum corneum removed and which has been reported as a model for mucous membrane) , particularly preferred are neutral methylphosphonate Oligomers having only methylphosphonate internucleosidyl linkages.
- Oligomers which may be neutral until they enter cells and once inside are converted to charged species through chemical or biological processes.
- Such charged oligonucleotides may contain other moieties that stabilize the oligonucleotides to nuclease degradation.
- Substituents such as 2'-O-methylribose groups, various base modification, and analogs of the phosphorous back ⁇ bone, such as phosphorothioates, can increase resistance to nucleases.
- the presence of methylphos ⁇ phonate or other neutral internucleoside linkages in the Oligomer give exonuclease resistance.
- neutral Oligomers having from about 6 to about 40 nucleosides, more preferably from about 12 to about 20 nucleosides.
- neutral Oligomers which comprise more than 20 nucleosides may be used, where com ⁇ plementarity to a longer sequence is desired, it may be advantageous to employ shorter neutral tandem Oligomers to maximize solubility and penetration through the skin or mucous membranes while competing for the development of a secondary structure of the target nucleic acid, such as a RNA.
- the neutral Oligomers comprise alkyl- or aryl- phosphonate Oligomers
- the use of nucleoside units having 2'-0-alkyl- and, in particular, 2' -O-methyl-ribosyl moieties in these neutral oiigomers may advantageously improve hybridization of the Oligomer to its complementary target sequence.
- Suitable formulations comprise about 0.0001% to about 2% by weight of neutral Oligomer.
- neutral Oligc- ar formulations which comprise about 2% to about 100% wf a short chain aliphatic alcohol.
- Suitable alco ⁇ hols include ethanol, isopropyl alcohol, propylene glycol and glycerol. In certain studies, formulations of neutral Oligomers comprising ethanol have demonstrated advanta ⁇ geous transdermal flux.
- these neutral Oligomer formulations may additionally comprise a flux enhancer.
- Suitable flux enhancers include those known to those skilled in the art and include decylmethylsulfoxide, dimethylsulfoxide as well as cyclic ketones, lactones, anhydrides and esters such as those described in PCT Application No. PCT/US86/02583 (Publication Number W087/ 03473) . Some of these flux enhancers also increase retention of the Oligomer and, thus, act to increase the concentration of Oligomer within the skin itself.
- a flux enhancer which not only maximizes transdermal flux, but increases Oligomer retention in the skin.
- Certain cyclic ketone and lactone enhancers have been reported to increase local retention as well and, thus, comprise a preferred class of enhancers for topical administration of Oligomer formulations.
- the present inven ⁇ tion is directed to methods of preventing or decreasing cellular proliferation using Oligomers which interfere with expression of cytokines which influence cellular proliferation, with conversion of such cytokines from a precursor to an active form, or with the expression of an intracellular receptor antagonist thereof.
- Oligomers include antisense Oligomers, Third Strand Oligomers and Triplex Oligomer Pairs.
- IL-l/3 Interleukin-1/3
- IL-l ⁇ Interleukin-l ⁇
- intracellular splice variant of Interleukin-1 receptor antagonist intracellular Interleukin-1 receptor antago ⁇ nist
- icIL-lra intracellular Interleukin-1 receptor antago ⁇ nist
- IL-l converting enzyme such as an IL-l/3 converting enzyme by administration of an Oligomer which is complementary to a target sequence on the DNA or a mRNA transcribed therefrom which codes for IL-l/3, for IL-l ⁇ , for icIL-lra, or for an IL-l/3 converting enzyme.
- the present invention is directed to methods of decreasing hyperproliferation of keratinocytes or other epithelial cells by exposing the cells to a proliferation inhibiting amount of an Oligomer, either an antisense Oligomer, a Third Stand Oligomer or a Triplex Oligomer Pair.
- the antisense Oligomer is complementary to a sequence of RNA transcribed from a target gene.
- the Third Strand Oligomer has a base sequence selected so that it is capable of hydrogen bonding with a sequence of a double stranded nucleic acid and forming a triple helix complex therewith.
- the first and second Oligomers of the Triplex Oligomer Pair have sequences selected such that they are complementary to and capable of hydrogen bonding with a targeted single-stranded nucleic acid sequence and together with the single stranded nucleic acid form a triple helix complex.
- the target gene is selected from the group consisting of those genes encoding a cytokine which mediates cellular proliferation or a receptor antagonist or converting enzyme therefor.
- Cytokines which comprise suitable targets include IL- l ⁇ and IL-l/3. Since IL-l / 3 is synthesized as a precursor of 31 K Daltons and for extracellular activity needs to be converted into an active form which is reported to be 17.5 K Daltons, a gene encoding an IL-l/3 converting enzyme is an alternate preferred target gene. Other alternate pre ⁇ ferred target genes include those encoding other enzymes also involved in translational or post-translational modi ⁇ fication of IL-l family molecules that are critical for function of IL-l ⁇ , IL-l3 or IL-lra (for example, myristy- lation) . Certain regions in the transcription product of the selected gene are preferred targets for the Oligomer.
- Oligomers of appropriate length preferably from about 8 to 40 nucleotides, more preferably from about 12 to about 20 nucleosides, are selected so as to be adjacent to or cover these sites when hybridized to the target, in part or in whole.
- sites include, in the pre-mRNA, splice acceptor, splice donor, and splice branch points, and polyA addition region.
- the preferred sites in mRNA include the initiation codon, or the 5' end of the mRNA
- the sequence of the Oligomers would be the reverse complement of the sequence of the targeted region.
- these sites would include the following, with reference to the nucleotide positions of the human IL-l/3 gene (GenBank accession number M15840) : Splice acceptor, nucleotide positions:445/446 ; 908/909; donor junctions 970/971; 1535/1536 1587/1588 3575/3576 3777/3778 4322/4323 4487/4488 5722/5723 5853/5854 6569/6570
- these sites and nucleotide positions with reference to the sequence numbers of human IL-l ⁇ gene include the following:
- the following site is an example of a preferred site of icIL-lra, the site and nucleotide positions given are in reference to the nucleotide positions of intracellular splice-variant of the human IL-lra gene (GenBank accession number M55646) :
- Additional preferred target sites would comprise a mRNA cap site or splice junctions of the IL-lra gene.
- IL-l/3 convert ⁇ ing enzyme examples include the following, sites and nucleotide posi ⁇ tions of the human IL-l / 3 converting enzyme given in refer ⁇ ence to that gene (GenBank accession number M87507) :
- Oligomers of the appropriate length preferably from about 8 to 40 nucleosides and more preferably from about 12 to about 20 nucleosides, are selected so as to have sequences which hybridize to sites immediately adja- cent to these sites or hybridize with and cover these sites, in part or wholly, as defined by the nucleotide positions included above for IL-l/3, IL-l ⁇ , icIL-lra and IL-l/3 converting enzyme.
- the sequence of the Oligomers is the reverse complement of the sequence of the targeted region.
- the Oligomers are selected to form sequence-specific hydrogen bonding interactions with the double stranded nucleic acid target.
- Triplex Oligomer Pairs the first and second Oligomers are selected so as to form sequence spe ⁇ cific hydrogen bonding interactions with a single stranded nucleic acid, and together form a triple helix structure.
- Preferred therapeutic indications include conditions which can be classed as (a) cutaneous, benign hyper-pro- liferative; (b) cutaneous, malignant hyper-proliferative; (c) epithelial, benign hyper-proliferative; (d) epithe ⁇ lial, malignant hyper-proliferative; and (e) non-epithe ⁇ lial, hyper-proliferative.
- Cutaneous conditions in which epidermal hyper ⁇ proliferation results in symptomatology include, but are not limited to, psoriasis, ichthyosis, pityriasis rubra pilaris ("PRP"), chronic dermatitis, psoriasifor derma ⁇ titis, atopic dermatitis, viral acanthoma (warts) , other benign growths, lichen simplex chronicus, and mycosis fungoides/Sezary syndrome.
- PRP psoriasis
- ichthyosis pityriasis rubra pilaris
- chronic dermatitis psoriasifor derma ⁇ titis
- atopic dermatitis atopic dermatitis
- viral acanthoma (warts) other benign growths
- lichen simplex chronicus and mycosis fungoides/Sezary syndrome.
- Malignant, cutaneous, hyper-proliferation of the epidermal keratinocytes include squamous cell carcinomas, basal cell carcinomas, actinic keratoses, keratoacanthomas and other epithelial neoplasms of the skin.
- Epithelial, non-malignant hyper-proliferative condi- tions include oral mucosal, vaginal, cervical, esophageal, pulmonary and gastrointestinal hyperplasias and dyspla- sias, laryngeal papillomas and bladder cystitis.
- Epithelial, malignant conditions of non-epidermal epithelial cells include squamous cell and other epi- thelial carcinomas of the head and neck, pulmonary tree, intestines, breast, bladder, cervix, uterus, and vagina.
- Non-epithelial hyper-proliferations may also be responsive. These include rheumatoid arthritis, poly- cystic renal disease, restenosis and fibrotic conditions of various organs. Non-epithelial cancers may also be targets.
- the methods of the present invention may be used in the treatment of conditions where preventing expression of IL-l family of proteins results in secondary inhibition of release of other cytokines, whereby the condition is ameliorated.
- conditions include, but are not limited to, rheumatoid arthritis, multiple sclerosis, inflammatory bowel disease, uveitis or inflammation in psoriasis.
- IL-l ⁇ , IL-lg, and IL-l Receptor Antagonist in Keratinocvte Growth A major fundamental issue is whether psoriasis is an immunological disorder or the result of unregulated kera ⁇ tinocvte growth.
- IL-l elicits activities in a wide var ⁇ iety of cell types that result in pathological effects that are seen in psoriasis.
- dysregulation of IL-l has been reported in psoriatic tissue and may have consequences to the disease state. (Cooper, K.D. et al., J. Invest. Dermatol.. 5.:245-265 (1990)) .
- Psoriatic tis ⁇ sue has been reported to have decreased levels of IL-l ⁇ (-1/10) and increased levels of IL-l/3 ( ⁇ 2x) over normal tissue (Cooper, K.D., et al., . Immunol. 144:4593-4603 (1990) ) .
- an intracellular form of the IL-l receptor antagonist is expressed in normal epidermis and dominates functionally in psoriatic epidermis (Hammerberg, C, et al., "Interleukin-1 Receptor Antagonist in Normal and Psoriatic Epidermis," J Clin. Inves ..
- IL-l receptor antagonist is responsible for the IL-l inhibitory activity that dominates in psoriatic skin.
- im, N-I, et al. "Psoriatic Skin Reveals the in vivo Presence of the Epidermal IL-l Inhibitor, " Arch. Dermatol. Res.. 1991 (in Press)
- all members of the IL-l family are present almost exclusively intracellularly and are not secreted, although they can be released.
- the cytokines are present as both precursor and product; however, IL-l/3 in normal or psoriatic tissue is processed into an inactive form as assayed by T-cell acti ⁇ vation.
- antisense Oligo ⁇ mers provide one of the few methods to examine the func ⁇ tional importance of the gene products. Antisense inhibi ⁇ tion of gene expression provides not only the specificity cf discrimination between genes but also between highly related genes. Two different keratinocyte cultures have been used in these studies. The normal keratinocyte cul ⁇ tures are derived from normal human skin by separating the epidermis and culturing the keratinocytes (Baadsgard, 0., et al., J. Invest. Dermatol. 95:275-282 (1990)) .
- Another culture is a keratinocyte cell line that retains the prop ⁇ erties of keratinocytes and can undergo terminal differen ⁇ tiation to form stratum corneum when transplanted into nude mice (Boukamp, P., et al., J. Cell. Biol. 106:761-771 (1988) ) .
- a second cell culture was a keratinocyte cell line that retained the properties of keratinocytes and which can undergo terminal differentiation to form stratum corneum when transplanted into nude mice (HaCaT cell line) . (See Barkamp et al, supra. )
- Antisense Oligomers used in these studies were directed to the initiation codon of the individual gene target mRNA's or a splice junction and are shown in Table I along with additional sequences that have been used to assess sequence specificity.
- kera ⁇ tinocytes In addition to IL-l ⁇ and IL-l/3, kera ⁇ tinocytes also produce a number of other cytokines that may lead to inflammatory cell infiltration of the dermis. Keratinocytes in psoriasis release a balance of cytokines that boost T-cell activation. (Chang, E.Y. , "T-Cell Acti ⁇ vation is Potentiated by Cytokines Released by Lesional Psoriatic, But Not Normal, Epidermis," Arch. Dermatol. , Submitted, 1992) .
- inhibiting keratinocyte proliferation may also have an effect upon the immune component of the disease, not only because the IL-l group is one of several synergizing cytokines respon ⁇ sible for boosting T-cell activation in psoriasis, but because changing the intracellular cytokine milieu by use of an antisense or Third Strand Oligomer to IL-l/3 or IL-l ⁇ one may also block release of other cytokines.
- Neutral methylphosphonate Oligomers are synthesized using methylphosphonamidite monomer, according to the chemical methods described by P.S. Miller et al. (Nucleic acids).
- Solid phase synthesis is performed on a Milligen Model 8800 DNA synthesizer.
- the programs used with the synthesizer are named MTHL_06 (main) and CPLAWll (coup ⁇ ling) and are obtained from the manufacturer.
- the reagent mixtures used are as follows: 1. Activator: 0.45 M tetrazole in acetonitrile. 2. Cap A: 40% acetic anhydride in acetonitrile.
- Deblock 2.5% dichloroacetic acid in dichloromethane.
- Oxidizer 0.1 M I 2 in tetrahydrofuran/2,6- lutidine/water (74.82/25/0.18; v/v/v) .
- Wash A acetonitrile containing less than 30 ppm water.
- Wash B acetonitrile containing less than 30 ppm water.
- the Oligomer is synthesized using a support acrylate beads derivatized with the appropriate nucleoside.
- the crude, protected methylphosphonate Oligomers are removed from the solid support by mixing with acetoni ⁇ trile/ethanol/concentrated ammonium hydroxide (45/45/10; v/v/v) for thirty minutes at room temperature.
- the protecting groups are removed from the bases by addition of an equal volume of ethylenediamine (high quality) for 6 hours at room temperature.
- the resulting solution is diluted 10-fold with water and then neutralized with glacial acetic acid.
- the solution containing Oligomers is passed over a Sep-Pak w C18 cartridge (Millipore/Waters Bedford, MA) prepared according to the manufacturer's specification. The column is washed with water and the Oligomers are eluted with 50% acetonitrile in water.
- the column is attached to the Beckman HPLC system and a gradient of 0 to 20% Buffer B over 5 minutes, followed by a gradient of 20 to 60% Buffer B over 40 minutes, is run at a flow rate of 3.0 ml/minute. Fractions are collected and those containing full length methylphosphonate Oligo ⁇ mer are pooled, evaporated under vacuum, and resuspended in 50% acetonitrile/water.
- keratinocytes Normal human keratinocytes were obtained by the procedure described by Baadsgaard et al. (J. Invest. Dermatol. 5:275-282 (1990)) and grown in keratinocyte growth medium (Clonetics, San Diego, CA) . Oligomer stocks were in 50% acetonitrile/H 2 0 and were diluted at least 100 fold to achieve a concentra ⁇ tion of lOO ⁇ M, in the culture medium, unless noted otherwise. The maximum amount of acetonitrile in the media was 0.5%. Cells were plated at 3 X 10 3 cells in a single well of a 96-well cell culture plate. The cells were main ⁇ tained at 37°C in a C0 2 incubator.
- 3 H-dT (l ⁇ Ci) was added and the label was incorporated for 6 hours.
- the acid-precipitable label was collected and the counts determined using a scintillation counter.
- six wells (replicates) were setup and run. Of the six replicates, the ones having highest and lowest number of counts were eliminated and the average value and error were calculated using the remaining four values.
- Treatment of freshly obtained normal keratinocytes cultured ex vivo with methylphosphonate (MP) antisense Oligomer to IL-l ⁇ or IL-l/3 was carried out for different lengths of time to evaluate the effect on growth when the cytokines are targeted.
- MP methylphosphonate
- a methyl phosphonate (“MP") Oligomer was synthesized with the same base composition as an IL- l / S Oligomer (1252) but 2 nucleotides were exchanged in their position in the molecule, thus, the Oligomer would be expected to have low or no affinity for the targeted gene.
- the Oligomers were incubated with normal keratin ⁇ ocyte cultures for 4 days at 100 ⁇ M.
- An established human keratinocyte cell line HaCaT has also been used to provide a continuous source of cells.
- the cell line maintains some of the properties of keratinocytes most notably the capacity to terminally differentiate when transplanted onto immuno-compromised mice (Boukamp, P., et al., J. Cell. Biol. 106:761-771 (1988) ) .
- the HaCaT cell line was maintained in DMEM with 10% fetal calf serum.
- Oligomer stocks were kept and diluted as described in Example 2. The cells were plated, incubated, labelled and precipitable label determined as described in Example 2.
- IL-l/3 Oligomer 1 Concentration dependence of IL-l/3 Oligomer (Oligo ⁇ mer 1) inhibition of HaCaT cells after 4 days at the indicated concentration of Oligomer is shown in Table IV along with Oligomer Cl, the mismatch Oligomer.
- a dose dependent inhibition of HaCaT cells by antisense IL-l/3 Oligomer (Oligomer 1) was observed, whereas no decrease in proliferation was seen with Oligomer Cl, which had a 2 nucleotide mismatch.
- the keratinocyte cell line showed similar inhibition to that observed with normal human keratinocytes by the antisense IL-l/3 (Oligomer 1 (1252) ) .
- Intracellular IL-l receptor antagonist (icIL-lra) has been targeted by antisense MP Oligomers to examine its role in keratinocyte proliferation. (See, e.g.. Eisenberg, S.P., et al., Nature 343:341-346 (1990); Hannum, C.H., et al., Nature 343:336-340 (1990); Kupper, T.S., J. ' ciin. Invest. 86:1783-1789 (1990)).
- the intra ⁇ cellular IL-lra has a initiation codon region that is unique to it and not to the soluble form of IL-lra. This region provides a unique target for discriminating between the intracellular and soluble forms of the gene products.
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Abstract
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Priority Applications (4)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| KR1019940704197A KR950701528A (en) | 1992-05-22 | 1993-05-21 | Treatment of cell hyperproliferation by inhibition of interleukin-1 (TREATMENT OF CELLULAR HYPERPOLIFERATION BY INHIBITION OF INTERLEUKIN-1) |
| JP6500694A JPH07508977A (en) | 1992-05-22 | 1993-05-21 | Treatment of cell hyperproliferation by inhibition of interleukin-1 |
| EP93914110A EP0644765A4 (en) | 1992-05-22 | 1993-05-21 | METAL POWDER COMPOSITIONS CONTAINING BINDERS FOR HIGH TEMPERATURE COMPRESSION. |
| NZ253509A NZ253509A (en) | 1992-05-22 | 1993-05-21 | Anti-sense nucleoside sequences 6-100+ bases long as il-1 inhibitors |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US88773492A | 1992-05-22 | 1992-05-22 | |
| US07/887,734 | 1992-05-22 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO1993024134A1 true WO1993024134A1 (en) | 1993-12-09 |
Family
ID=25391751
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US1993/004917 Ceased WO1993024134A1 (en) | 1992-05-22 | 1993-05-21 | Treatment of cellular hyperproliferation by inhibition of interleukin-1 |
Country Status (9)
| Country | Link |
|---|---|
| EP (1) | EP0644765A4 (en) |
| JP (1) | JPH07508977A (en) |
| KR (1) | KR950701528A (en) |
| AU (1) | AU4388993A (en) |
| CA (1) | CA2136349A1 (en) |
| IL (1) | IL105741A0 (en) |
| MX (1) | MX9302951A (en) |
| NZ (1) | NZ253509A (en) |
| WO (1) | WO1993024134A1 (en) |
Cited By (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1995024917A1 (en) * | 1994-03-15 | 1995-09-21 | Unilever Plc | Skin treatment composition |
| WO1997032019A3 (en) * | 1996-03-01 | 1997-10-23 | Euroscreen Sa | C-c ckr-5, cc-chemikines receptor, derivatives thereof and their uses |
| US6159460A (en) * | 1988-05-27 | 2000-12-12 | Amgen Inc. | Method for treating interleukin-1 mediated diseases |
| EP0994743A4 (en) * | 1997-07-10 | 2001-02-14 | Therakos Inc | Treatment of inflammatory disorders of the bowel and urinary bladder |
| US6599873B1 (en) | 1988-05-27 | 2003-07-29 | Amgen Inc. | Interleukin-1 inhibitors, compositions, and methods of treatment |
| US6733753B2 (en) | 1997-02-10 | 2004-05-11 | Amgen Inc. | Composition and method for treating inflammatory diseases |
| US6858409B1 (en) | 1988-05-27 | 2005-02-22 | Amgen Inc. | Nucleic acids encoding interleukin-1 inhibitors and processes for preparing interleukin-1 inhibitors |
| WO2004100987A3 (en) * | 2003-05-06 | 2005-05-26 | Regeneron Pharma | Methods of using il-1 antagonists to treat neointimal hyperplasia |
| WO2006084145A3 (en) * | 2005-02-02 | 2006-12-21 | Regeneron Pharma | Methods of using il-1 antagonists to reduce c-reactive protein |
| WO2007128973A3 (en) * | 2006-04-10 | 2008-05-02 | Polybiomed Ltd | Interleukin 1-receptor antagonist composition to treat restenosis |
| US7897582B2 (en) | 2003-05-23 | 2011-03-01 | Isis Pharmaceuticals, Inc. | Oligonucleotide compositions and methods for the modulation of the expression of B7 protein |
| US7960355B2 (en) | 2003-05-23 | 2011-06-14 | Isis Pharmaceuticals, Inc. | Compositions and methods for the modulation of the expression of B7 protein |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5135917A (en) * | 1990-07-12 | 1992-08-04 | Nova Pharmaceutical Corporation | Interleukin receptor expression inhibiting antisense oligonucleotides |
Family Cites Families (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1989006702A1 (en) * | 1988-01-21 | 1989-07-27 | Chemex Pharmaceuticals, Inc. | Selective inhibition of gene expression by photoactivatable oligonucleotides |
| EP0527790A4 (en) * | 1990-04-09 | 1993-09-15 | The American National Red Cross | Rejuvenation compositions and methods for their use |
| WO1992021353A1 (en) * | 1991-05-31 | 1992-12-10 | Genta Incorporated | Compositions and delivery systems for transdermal administration of neutral oligomers |
| AU657701B2 (en) * | 1991-08-30 | 1995-03-23 | Vertex Pharmaceuticals Incorporated | Interleukin 1beta protease and interleukin 1beta protease inhibitors |
-
1993
- 1993-05-19 IL IL105741A patent/IL105741A0/en unknown
- 1993-05-20 MX MX9302951A patent/MX9302951A/en unknown
- 1993-05-21 WO PCT/US1993/004917 patent/WO1993024134A1/en not_active Ceased
- 1993-05-21 KR KR1019940704197A patent/KR950701528A/en not_active Withdrawn
- 1993-05-21 EP EP93914110A patent/EP0644765A4/en not_active Withdrawn
- 1993-05-21 CA CA002136349A patent/CA2136349A1/en not_active Abandoned
- 1993-05-21 AU AU43889/93A patent/AU4388993A/en not_active Abandoned
- 1993-05-21 NZ NZ253509A patent/NZ253509A/en not_active IP Right Cessation
- 1993-05-21 JP JP6500694A patent/JPH07508977A/en active Pending
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5135917A (en) * | 1990-07-12 | 1992-08-04 | Nova Pharmaceutical Corporation | Interleukin receptor expression inhibiting antisense oligonucleotides |
Non-Patent Citations (2)
| Title |
|---|
| Science, Volume 241, issued 22 July 1988, M. COONEY et al., "Site-Specific Oligonucleotide Binding Represses Transcription of the Human c-myc Gene in Vitro", pages 456-459, see Abstract. * |
| See also references of EP0644765A4 * |
Cited By (13)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6159460A (en) * | 1988-05-27 | 2000-12-12 | Amgen Inc. | Method for treating interleukin-1 mediated diseases |
| US6599873B1 (en) | 1988-05-27 | 2003-07-29 | Amgen Inc. | Interleukin-1 inhibitors, compositions, and methods of treatment |
| US6858409B1 (en) | 1988-05-27 | 2005-02-22 | Amgen Inc. | Nucleic acids encoding interleukin-1 inhibitors and processes for preparing interleukin-1 inhibitors |
| WO1995024917A1 (en) * | 1994-03-15 | 1995-09-21 | Unilever Plc | Skin treatment composition |
| US6930174B2 (en) | 1996-03-01 | 2005-08-16 | Euroscreen, S.A. | CCR5 chemokine receptor-specific antibodies |
| WO1997032019A3 (en) * | 1996-03-01 | 1997-10-23 | Euroscreen Sa | C-c ckr-5, cc-chemikines receptor, derivatives thereof and their uses |
| US6733753B2 (en) | 1997-02-10 | 2004-05-11 | Amgen Inc. | Composition and method for treating inflammatory diseases |
| EP0994743A4 (en) * | 1997-07-10 | 2001-02-14 | Therakos Inc | Treatment of inflammatory disorders of the bowel and urinary bladder |
| WO2004100987A3 (en) * | 2003-05-06 | 2005-05-26 | Regeneron Pharma | Methods of using il-1 antagonists to treat neointimal hyperplasia |
| US7897582B2 (en) | 2003-05-23 | 2011-03-01 | Isis Pharmaceuticals, Inc. | Oligonucleotide compositions and methods for the modulation of the expression of B7 protein |
| US7960355B2 (en) | 2003-05-23 | 2011-06-14 | Isis Pharmaceuticals, Inc. | Compositions and methods for the modulation of the expression of B7 protein |
| WO2006084145A3 (en) * | 2005-02-02 | 2006-12-21 | Regeneron Pharma | Methods of using il-1 antagonists to reduce c-reactive protein |
| WO2007128973A3 (en) * | 2006-04-10 | 2008-05-02 | Polybiomed Ltd | Interleukin 1-receptor antagonist composition to treat restenosis |
Also Published As
| Publication number | Publication date |
|---|---|
| JPH07508977A (en) | 1995-10-05 |
| AU4388993A (en) | 1993-12-30 |
| MX9302951A (en) | 1994-07-29 |
| EP0644765A1 (en) | 1995-03-29 |
| KR950701528A (en) | 1995-04-28 |
| IL105741A0 (en) | 1993-09-22 |
| NZ253509A (en) | 1999-09-29 |
| EP0644765A4 (en) | 1997-02-26 |
| CA2136349A1 (en) | 1993-12-09 |
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