WO1998056906A1 - Trimerising module - Google Patents

Trimerising module Download PDF

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WO1998056906A1
WO1998056906A1 PCT/DK1998/000245 DK9800245W WO9856906A1 WO 1998056906 A1 WO1998056906 A1 WO 1998056906A1 DK 9800245 W DK9800245 W DK 9800245W WO 9856906 A1 WO9856906 A1 WO 9856906A1
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monomer polypeptide
polypeptide construct
ttse
monomer
gly
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Inventor
Hans Christian THØGERSEN
Michael Etzerodt
Thor Las Holtet
Niels Jonas Heilskov Graversen
Jette Sandholm Kastrup
Bettina Bryde Nielsen
Ingrid Kjøller LARSEN
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Priority to AU79065/98A priority Critical patent/AU736707B2/en
Priority to DK98929225T priority patent/DK1012280T3/en
Priority to EP98929225A priority patent/EP1012280B1/en
Priority to DE69827507T priority patent/DE69827507T2/en
Priority to AT98929225T priority patent/ATE282092T1/en
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Priority to CA2304254A priority patent/CA2304254C/en
Publication of WO1998056906A1 publication Critical patent/WO1998056906A1/en
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Priority to US11/452,434 priority patent/US7642044B2/en
Priority to US12/405,021 priority patent/US8318679B2/en
Priority to US12/405,003 priority patent/US8192953B2/en
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/62DNA sequences coding for fusion proteins
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4726Lectins
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/40Fusion polypeptide containing a tag for immunodetection, or an epitope for immunisation
    • C07K2319/41Fusion polypeptide containing a tag for immunodetection, or an epitope for immunisation containing a Myc-tag
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/50Fusion polypeptide containing protease site
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/70Fusion polypeptide containing domain for protein-protein interaction
    • C07K2319/73Fusion polypeptide containing domain for protein-protein interaction containing coiled-coiled motif (leucine zippers)
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/95Fusion polypeptide containing a motif/fusion for degradation (ubiquitin fusions, PEST sequence)

Definitions

  • the present invention relates to the design of trimeric polypeptides using polypeptide structural elements derived from the tetranectin protein family, and their use in rational de novo design and production of multi-functional molecules includng the application of the multi-functional molecules in protein library technology, such as phage display technology, diagnostic and therapeutic systems, such as human gene therapy and imaging .
  • Tetranectin is a Ca 2+ -binding trimeric C-type lectin which is present in blood plasma and from the extracellular matrix of certain tissues.
  • the tetranectin group of proteins comprises tetranectin isolated from man and from mouse and the highly related C-type lectin homologues isolated from the cartilage of cattle (Neame and Boynton, database accession number PATCHX:u22298) and from reef shark (Neame et al . , 1992, Neame et al . , 1996 and database accession number p26258 and PIR2:A37289) .
  • the mature tetranectin polypeptide chain of 181 amino acid residues is encoded in three exons as shown by molecular cloning and characterisation of the gene (Berglund & Peter- sen, 1992; Wewer & Albrechtsen, 1992) .
  • Exon 3 of the human tetranectin gene encodes a separate functional and structural unit, a single long-form so-called carbohydrate recognition domain (CRD) , with three intra-chain disulphide bridges.
  • CCD carbohydrate recognition domain
  • the tetranectin CRD is considered to belong to a distinct class of C-type lectins (Day, 1994) clearly related to C-type lectins by sequence homology, conservation of disulphide topology (Fuhlendorff et al , 1987) and by the presence of an almost conserved suit of amino acid residues known to be involved in binding of calcium ions .
  • a published poster (Holtet et al 1996) has proposed tetranectin to be a trimer and that trimerisation is governed by the peptide encoded by exon 1.
  • the peptide encoded by exon 1 was proposed to be "necessary and sufficient to govern trimerisa- tion” whereas the polypeptide encoded by exon 2 was proposed as being "involved in lysine-sensitive binding to plasminogen" .
  • Tetranectin was first identified as a plasma protein binding to plasminogen by binding to the kringle-4 domain of plasminogen.
  • Recent unpublished results proves (JL) that the site in tetranectin involved in binding to plasminogen resides entirely in the CRD-domain (encoded by exon 3), (2 . ) that binding is calcium sensitive, and (3 . ) that the kringle-4 binding site in tetranectin overlaps the putative carbohydrate binding site of the CRD domain.
  • TN exons 1 and 2 i.e.
  • trimerisation unit in TN does not exihibit any plasminogen-binding affinity. Accordingly, an artificial protein containing a TTSE unit as part of its architecture is not expected to interact with plasminogen or plasmin due to properties inherited from tetranectin.
  • Tetranectin has also been reported to bind to sulfated polysaccharides like heparin (Clemmensen (1989) Scand J. Clin. Lab. Invest, vol 49:719-725). We have new results showing that the CRD domains of tetranectin are not involved in this protein-polysaccharide interaction. In fact, the site in tetranectin is located in the N-terminal region of exon 1 and may be abolished by removal or mutagenis of N-terminal lysine residues (Graversen et al . , manuscript), processes that do not inhibit trimerisation.
  • TTSEs that include most or all of TN exon 1 therefore confer an affinity for sulfated polysaccharides to any designed protein which encompasses such a TTSE as part of its structure. If desired, however, this affinity can be reduced or abolished by N-terminal truncation or mutagenesis of lysine residues in the part of the TTSE that corresponds to the N-terminal 8-10 amino acid residues of exon 1 (Graversen et al . , unpublished) .
  • gene therapy which is also withing the scope of the present invention, there is only a limited number of basic strategies for gene therapy which show some promise in preclinical models so far.
  • the two major strategies e.g for the treatment of malignant tumors are cytokine-gene aided tumor vaccination and selective prodrug activation.
  • the first strategy relies on the strong immunostimulatory effect of a relatively small number of genetically modified cytotoxic T cells or tumor cells
  • the second one is based on conversion of a nontoxic prodrug into a toxic product by an enzyme-encoding gene where the toxic effect is exerted also on non-transduced dividing tumor cells due to a so-called bystander effect.
  • strategies can be envisaged where the malignant phenotype of a cell is reversed by either inactivating an oncogene or reestablishing an inactivated tumor suppressor gene.
  • a synthetic hybrid system will be used that incorporates engineered viral component for target-specific binding and core entry, immunosuppressive genes from various viruses and some mechanism that allows site-specific integration, perhaps utilizing AAV sequences or an engineered retroviral integrase protein.
  • regulatory sequences from the target cell itself will be utilized to " allow physiological control of expression of the inserted genes. All these components would be assembled in vitro in a liposome-like formulation with additional measures taken to reduce immunogenicity such as concealment by PEG
  • nucleic acids As mentioned, one of the current problems in gene therapy is the efficient delivery of nucleic acids to as many as possible of a specific population of cells in the body, and it is often not possible to find e.g. an appropriate viral vector that will find that particular cell population efficiently and selectively (Review on aspects of gene therapy: Schaper, W & Ito, W.D. Current Opinion in Biotechnology, 1996, vol. 7, 635-640. Nature Biotechnology 1998 vol 16 is an entire volume dedicated to protein- and gene delivery) .
  • TTSEs where one of the subunits is modified with a membrane integrating or associating entity, may be used as a practicable tool for generating a viral, bacterial or preferentially artificially assembled lipomal vehicle that will allow selective delivery of the contained material by infection or transfection of any cell population to which such a specific antibody may be generated.
  • vehicles may, with the use of TTSEs, be individualised by selection of patient specific antibodies or by assembling TTSE units conjugated with scFvs selected from an ensemble of antibodies selected by the particular markers of the disease .
  • the human tetranectin polypeptide (and derivatives thereof) is capable of forming very stable trimers which have a number of advantageous characteristics and uses.
  • the tetranectin molecule includes a trimerising structural element which can be used as carrier of other chemical entities, thereby providing a carrier molecule of a hitherto unseen versatility.
  • the thermal stability of the tetranectin trimerisation module is such that the trimer can be shown to exist even at about 60°C (Example 4, trimerised tetranectin) or at about 70°C (Example 3, trimerised ubiqui- tin) , whereas a collectin trimer unit falls apart at about 50-55°C (WO 95/31540, Example 1, page 36 therein) .
  • the collectin trimerisation domain possibly allows attachment of fusion partners at C-terminal ends of the trimerisation module, and whereas no example has been reported of successful or claimed successful attachment of a foreign protein (except for the GST fusion partner) to the N-terminal region of the collectin trimerisation module, the information disclosed herein demonstrates that the tetranectin trimerisation module is more versatile in that is allows attachment of foreign proteins to either, as well as to both, terminus or termini simultaneously (Examples 1-4) . This has important consequences as the tetranectin trimerisation module may be deployed to construct molecules that are able to interact (each end with a binding valency up to 3) simultaneously with two bulky interaction partners like e.g. cell surfaces.
  • polypeptide constructs CIIH6FXTN123 , H6FXTN123, H6FXTN12, and H6FXTN23 which all involve parts of the tetranectin molecule have previously been prepared (cf . e.g. WO 94/18227) but these constructs have all been provided with a view to li ⁇ 3 H ft ) 0 CS
  • Fig. 3 Construction of the expression plasmids pTH6FXtripa and pTH6FXtripb.
  • Fig. 4 Predicted amino acid sequence of the fusion proteins H6FXtripa (SEQ ID NO: 28) and H6FXtripb (SEQ ID NO: 29) encoded by the expression plasmids pTH6FXtripa and pTH6FXtripb, respectively.
  • Fig. 5 Construction of the expression plasmids pTH6FXTN123 and pTCIIH6FXTN123.
  • pTCIIH6 was derived from pT7H6 by substitution of the Ndel - Hindlll fragment of pT7H6 with the Ndel - Hindlll fragment of pLcII (Nagai and Th ⁇ gersen, 1987) encoding the first 32 residues of the lambda ell protein MVRANKRNEALRIESALLNKIAMLGTEKTAEG (SEQ ID NO: 11) fused in the 3' end to a nucleotide sequence encoding the H6 sequence GSHHHHHHGS (SEQ ID NO: 12).
  • Fig. 6 Predicted amino acid sequence of the fusion proteins H6FXTN123 (SEQ ID NO: 25) and CIIH6FXTN123 (SEQ ID NO: 24) encoded by the expression plasmids pTH6FXTN123 and pTCIIH6FXTN123, respectively.
  • Fig. 7 Construction of the expression plasmids pTH6FXTN12, pTH6FXTN23, and pTH6FXTN3.
  • Fig. 8 Predicted amino acid sequence of the fusion proteins H6FXTN12 (SEQ ID NO: 26), H6FXTN23 (SEQ ID NO: 27), and H6FXTN3 (SEQ ID NO: 30) encoded by the expression plasmids pTH6FXTN12, pTH6FXTN12, respectively.
  • Fig. 9 Gel filtration analysis of TN123, TN23, and TN3
  • Analytical gel filtration of the recombinant tetranectin derivatives TN123, TN23, and TN3 were performed on a Superose 12 HR 10/30 column (Pharmacia, Sweden) with a total volume of 25 ml in 100 mM NaCl and 50 mM Tris-HCl pH 8 and a flow rate of 0.2 ml/min. Vertical bars at peak maxima identify elution profiles for each of the three proteins .
  • Fig. 10 Cross-linking analysis of TN123 and CIIH6FXTN123. Samples of TN123, CIIH6FXTN123 and mixtures of both were incubated with DMSI and analyzed by SDS-PAGE (12% gel) .
  • CIIH6FXTN123 fusion protein (lane 1) .
  • TN123 (lane 2) .
  • DMSI treated CIIH6FXTN123 (lanes 3 and 6) .
  • DMSI-treated TN123 (lane 4) .
  • Identical samples of DMSI treated mixtures of CIIH6FXTN123 and TN123 without heat exposure (lanes 5 and 7) and heat treated for 2.5 sec, 15 sec, 2.5 min. and 10 min . , respectively, before treatment with DMSI (lanes 8-11) .
  • Fig. 11 Cross-linking analysis of the recombinant tetranectin derivatives TN123, TN23, TN3 , and H6FXTN12.
  • the recombinant proteins TN123, TN23,TN3, H6FXTN12 or mix- " tures of TN123 and each of the other were analyzed by SDS- PAGE. Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) .
  • TN123 cross-linked with DMSI (lane 1) .
  • TN123 and H6-rTN12 cross-linked with DMSI without and with heat treatment at 70°C for two min. (lanes 2 and 3) .
  • H6FXTN12 cross-linked with DMSI (lanes 4 and 5) .
  • Cross-linking of TN123 and TN23 without and with heat treatment at 70 °C for two min. (lanes 7 and 8) .
  • Cross-linking of TN23 (lane 9) .
  • TN123 cross- linked by DMSI (lane 11) .
  • Cross-linking of TN123 and TN3 without and with heat treatment for two min. (lanes 12 and 13) .
  • Cross-linking of TN3 (Lane 14) .
  • Fig. 12 Cross-linking based analysis of the trimer thermal stability.
  • TN123 and the fusion protein H6FXtripb-UB were cross-linked with DMSI at different temperatures and the samples analyzed by SDS-PAGE. Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) .
  • TN123 without cross-linking (lane 1) .
  • H6FXtripb-UB (SEQ ID NO: 31) without cross-linking (lane 6) .
  • Fig. 13 Construction of the expression plasmid pTH ⁇ FXtripb- UB.
  • the amplified DNA fragment comprising the nucleotide sequence (SEQ ID NO: 16) encoding the ubiquitin amino acid sequence (SEQ ID NO: 19) from Q2 to G76 was cut with the restriction enzymes Bell and Hindlll and ligated into the BamHI and Hindlll sites of the expression plasmid pT7H6FXtripb (Example 1) using standard procedures.
  • Fig. 14 Predicted amino acid sequence of the fusion protein H6FXtripb-UB (SEQ ID NO: 31) encoded by the expression plasmid pTH6FXtripb-UB .
  • Fig. 15 Construction of the expression plasmid pTH6FXscFV (CEA6) tripb.
  • Fig. 16 Predicted amino acid sequence of the fusion protein H6FXscFV(CEA6) tripb encoded by the expression plasmid pH6FXscFV (CEA6) tripb .
  • Fig. 17 Construction of the expression plasmid pTH6FXtripbscFX(CEA6) .
  • the DNA fragment, amplified with the primer pairs having SEQ ID NO: 21 and 23, comprising the nucleotide sequence (SEQ ID NO: 20) encoding the single chain antibody CEA6 , scFV (CEA6) , amino acid sequence from Ql to A261 was cut with the restric- tion enzymes BamHI and Hindlll and ligated into the BamHI and
  • FIG. 18 Predicted amino acid sequence of the fusion protein H6FXtripbscFv(CEA6) encoded by the expression plasmid pH6FXtripbscFv(CEA6) .
  • Fig. 19 Construction of the expression plasmid pTH6FXscFv(CEA6) tripbscFX (CEA6) .
  • the DNA fragment, amplified with the primer pair SEQ ID NO: 21 and 23, comprising the nucleotide sequence (SEQ ID NO: " 20) encoding the single chain antibody CEA6 , scFV (CEA6) , amino acid sequence from Ql to A261 was cut with the restriction enzymes BamHI and Hindlll and ligated into the BamHI and Hindlll sites of the expression plasmid pT7H6FXscFv(CEA6) tripb (Example 4) using standard procedures.
  • Fig. 20 Predicted amino acid sequence of the fusion protein H6FXscFv(CEA6) tripbscFv (CEA6) (SEQ ID NO: 34) encoded by the expression plasmid pH6FXscFv (CEA6) tripbscFv (CEA6) .
  • Fig. 21 Cross-linking analysis of the H6FXtripbscFv(CEA6) fusion protein (SEQ ID NO: 33) .
  • the fusion proteins H6FXtripbscFv(CEA6) (SEQ ID NO: 33) and TN123 were cross- linked at room temperature for 30 min. with 0 mg/ml, 0.5 mg/ml, 1.0 mg/ml, 1.5 mg/ml, and 2.0 mg/ml of DMSI, respectively.
  • Lane 1 H6FXtripbscFv(CEA6) without DMSI, H6FXtripbscFv(CEA6) with 0.5 mg/ml DMSI (lane 2), H6FXtripbscFv(CEA6) with 1.0 mg/ml DMSI (lane 3), H6FXtripbscFv(CEA6) with 1.5 mg/ml DMSI (lane 4) and
  • H6FXtripbscFv(CEA6) with 2.0 mg/ml DMSI (lane 5). Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) .
  • the stable complex formed by the TTSEs of the invention also forms a triple alpha helical coiled coil.
  • tetranectin family are polypeptides which share the consensus sequence shown in Fig. 2 or a sequence which are homologous at sequence level with this consensus sequence.
  • monomer polypeptide constructs of the invention are preferred which comprise a polypeptide sequence which has at least 68% sequence identity with the consensus sequence shown in Fig. 2, but higher sequence identities are preferred, such as at least 75%, at least 81%, at least 87%, and at least 92%.
  • heterologous moiety any chemi- cal entity which can be linked covalently to a TTSE and to which the TTSE is not natively covalently bound.
  • the heterologous moiety can be any covalent partner moiety known in the art for providing desired binding, detection, or effector properties.
  • the heterologous moiety can be a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, an antibody, an antigen binding antibody fragment, or a molecule having antibody characteristics such as e.g.
  • a molecule comprising one or more radioactive isotopes selected from 14 C, 3 H, 32 P, 33 P, 25 S, 38 S, 36 C1, 22 Na, 24 Na, 40 K, 42 K, 43 K, and any isotopes conventionally utilized for the purposes of facilitating detection of probes or the purposes of providing localized radiation so as to effect cell death; a cytokine such as an interferon or a leukotriene; PNA; a non-proteinaceous polymer such as a polymeric alkaloid, 11. a polyalcohol, a polysaccharide, a lipid and a polyamine ; a photo cross- linking moiety, i.e. a chemical entity which effects cross- linking upon photo-activation; and a group facilitating conjugation of the monomer polypeptide construct to a target.
  • the heterologous moiety is preferably covalently linked to the TTSE by via a peptide bond to the N- or C-terminus of the TTSE peptide chain, via a peptide bond to a side chain in the TTSE or via a bond to a cysteine residue, but any way of coupling covalently heterologous material to a polypeptide chain will be useful.
  • the skilled person will know of such possibilities, e.g. by consulting the teachings of WO 95/31540 in this regard which are hereby incorporated by reference .
  • one interesting aspect of the invention relates to a monomer polypeptide construct of the invention comprising two heterologous moieties which are linked via peptide bonds to the N- and C-terminus, respectively.
  • This approach introduces a number of possibilities in terms of e.g. linking larger entities with oligomers of the invention by having specific activities coupled to each end of the monomers (as explained in detail below, the oligomers of the invention may also utilise a version of this principle, where e.g. one N-terminus and one C-terminus of an oligomer are linked via peptide bonds to independent heterologous moieties) .
  • a complex between two or three monomers are described in the following way: three monomers having one TTSE each forms a trimer designated (1+1+1) , whereas a dimer formed between a monomer with two TTSEs and a monomer .with one TTSE is designated (1+2) .
  • Other (undesired) trimers can of course be formed, e.g. (2+2+1), where two TTSEs are not "in use", but it is preferred that the oligomers of the invention use all of their available TTSEs during complex formation.
  • monomer polypeptide construct is meant to designate a single polypeptide chain which may or may not have non-peptide groups coupled covalently to the polypeptide chain
  • dimeric polypeptide or “dimer”, “trimeric polypeptide” or “trimer” and “oligomer” i.e. a dimer or trimer
  • oligomer i.e. a dimer or trimer
  • the TTSE as exemplified by exon 2 or exons 1 and 2 of human tetranectin, preferably so modified to allow only hetero- trimerisation between dissimilar (1+1+1) or (1+2) (cf. the below discussion) subunits may be deployed as a general affinity mediator, which can be coupled chemically to each member of a selection of target molecules. After such conjugation with TTSE the target molecules may be homo- or hetero- trimerised as desired for any application. Similar deployment of dimerisation, using as one partner a polypeptide harbour- ing two TTSE sequences in-line, separated by a linker sequence of suitable length and character, may bet yet more advantageous, as in such case absolute control of stoichiometry in complex formation would be possible.
  • an important embodiment of the invention is a monomer polypeptide construct of the invention comprising 2 TTSEs which are covalently linked by a spacer moiety which allows both of the 2 TTSEs to take part in complex formation with a third TTSE not being part of the monomer polypeptide construct, but equally important is the embodiment of the inven- tion where the monomer polypeptide construct comprises one single TTSE, so as to allow trimerisation between three monomers and hence providing the optimum degree of versatility with respect to the number of functional units which can be easily incorporated into one single complex.
  • the spacer moiety has a length ) L to to H H
  • philic (e.g. lys and glu) residues that are largely exterior in the coiled coil structure have been replaced with alanine appear similar to the native protein, suggesting that is indeed possible without interfering very much with stability of the trimeric structure to replace all glu, asp and lys residues by a combination of gin, asn, arg or ala, and thereby generate a sequence that, as an N-terminally blocked synthetic peptide, would be very easy to convert into a chemically stable active-ester component, e.g. an N-hydroxy succinimide ester of an acetylated peptide, that could react with (and thereby couple to) any exposed lysine side chain in a target molecule of interest.
  • active-ester component e.g. an N-hydroxy succinimide ester of an acetylated peptide
  • one advantageous embodiment of the monomer polypeptide construct of the invention is one where at least one amino acid residue selected from the group consisting of amino acid residue nos . 6, 21, 22, 24, 25, 27, 28, 31, 32, 35, 39, 41, 42, is/are substituted by any non-helix breaking amino acid residue, the amino acid residue numbering referring to amino acid residues in SEQ ID NO: 7.
  • Another advantageous embodiment of the monomer polypeptide construct of the invention is one which is free from any free amino and/or carboxy groups. This would favour synthesis of a TTSE by means of solid or liquid phase peptide synthesis, since there would be no need of introducing any protective groups during peptide synthesis.
  • the TTSE comprises a repeated heptad having the formula a-b-c-d-e-f-g (N to C) , wherein residues a and d generally are hydrophobic amino acids.
  • residues a and d generally are hydrophobic amino acids.
  • the TTSE comprises the heptad repeated 3 times and that the last occurrence of the heptad has a glutamine residue corresponding to residues a and d.
  • exon 2 of native members of the tetranectin family seems to contain the necessary elements to effect stable trimerisation, it is preferred that the monomer polypeptide construct is free of substantial parts of tetranectin which is encoded by exon 3 and/or lacks substantial parts of tetranectin which is encoded by exon 1.
  • exon 1 encoded material seems to stabilise the trimeric native tetranectin, it is especially preferred that all or part of exon 1 is part of the monomer polypeptide construct, and it also seems to be rational to include the first three amino acids encoded by exon 3 , since these are known to take part of the formation of the native triple alpha helical coiled coil in human tetranectin.
  • One particularly interesting embodiment of the invention is the possibility of designing oriented molecular assemblies, where one or more functional entities are located N-termin- ally to the trimerising element and one or more functional entities are located C-terminally to the element.
  • Such types of design may be particularly advantageous where a certain relative ratio is desired among the different functional ) ) to to H H
  • a user provided with prefabricated collections of twenty different antibody constructs and twenty different toxin constructs - 40 different reagents in all - has the opportunity then to prepare 400 different toxin-antibody conjugates, simply by mixing a first preferred component from one reagent collection with a second preferred reagent from the other collection and then subject this binary mixture to conditions, i.e. gentle heating or incubation with a suitable level of denaturant, to accomplish subunit exchange among all trimeric molecular species in the mixture.
  • the desired hetero- bifunctional reagent will be present in the mixture as a major component of the mixture and may then be deployed as such to accomplish a given purpose or, alternatively apply a simple purification step to isolate his favoured hetero- functional binary reagent from any remaining mono-functional trimer species by a simple standard protein purification step, easily designed using standard techniques known in the field of protein purification.
  • a further enhancement of the versatility of the "pick-and- mix” technology may be achieved by including a specific affinity purification tag on each array of trimerisation module - probe/effector/indicator conjugate, fused directly in-line or, alternatively, fused via a cleavable linker (a polypeptide segment containing e.g. a factor X a or an to to H H
  • tion module component as this selection would be energetically favoured.
  • conjugation of one functional protein component to a suitably selected covalently dimerised tetranectin trimerisation module component and conjugation of a different functional protein component to a single-copy element of the trimerisation sequence would provide for the preferential formation of a 1:1 bifunctional complex and suppression of formation of any other complex.
  • the monomers of the invention may be prepared by methods generally known in the art, using exclusively or in combination the techniques of recombinant protein production, peptide synthesis (liquid phase or solid phase) , and traditional chemical coupling of heterologous moieties to a peptide chain or to specific residues therein.
  • the invention also relates to a method of preparing the monomer polypeptide construct of the invention, the method comprising
  • TTSE TTSE in a culture comprising a host cell which carries and expresses a nucleic acid fragment which encodes the TTSE, subsequently linking covalently at least one heterologous moiety to the TTSE, and thereafter isolating the resulting monomer polypeptide construct, or
  • nucleic acid fragment which is mentioned above is also a part of the invention and is defined as a nucleic acid fragment in isolated form which encodes a TTSE as defined herein or which encodes the polypeptide part of a monomer polypeptide construct according to the invention, with the proviso that the nucleic acid fragment is different from one that encodes native members of the tetranectin family, and that the nucleic acid fragment is different from one that encodes any of the fusion proteins CIIH6FXTN123 , H6FXTN123, H6FXTN12, H6FXTN23, the sequences of which are shown in SEQ ID NOs: 24-27.
  • the above mentioned host cell (which is also a part of the invention) can be prepared by traditional genetic engineering techniques which comprises inserting a nucleic acid fragment (normally a DNA fragment) encoding the polypeptide part of a monomer polypeptide construct of the invention into a suitable expression vector, transforming a suitable host cell with the vector, and culturing the host cell under conditions allowing expression of the polypeptide part of the monomer polypeptide construct.
  • the nucleic acid fragment encoding the polypeptide may be placed under the control of a suitable promoter which may be inducible or a constitutive promoter.
  • the polypeptide may be recovered from the extracellular phase, the periplasm or from the cytoplasm of the host cell .
  • Suitable vector systems and host cells are well-known .in the art as evidenced by the vast amount of literature and materials available to the skilled person. Since the present invention also relates to the use of the nucleic acid fragments of the invention in the construction of vectors and in host cells, the following provides a general discussion relating to such use and the particular considerations in practising this aspect of the invention.
  • prokaryotes are preferred for the initial cloning of nucleic sequences of the invention and constructing the vectors useful in the invention.
  • strains such as E. coli K12 strain 294 (ATCC No. 31446) , E. coli B, and E. coli X 1776 (ATCC No. 31537) .
  • E. coli K12 strain 294 ATCC No. 31446
  • E. coli B E. coli B
  • E. coli X 1776 ATCC No. 31557
  • Prokaryotes are also preferred for expression, since efficient purification and protein refolding strategies are available.
  • the aforementioned strains, as well as E. coli 3110 (F-, lambda-, prototrophic, ATCC No. 273325), bacilli such as Bacillus subtilis, or other enterobacteriaceae such as Salmonella typhimurium or Serratia marcesans, and various Pseudomonas species may be used.
  • plasmid vectors containing replicon and control sequences which are derived from species compatible with the host cell are used in connection with these hosts .
  • the vector ordinarily carries a replication site, as well as marking sequences which are capable of providing phenotypic selection in transformed cells.
  • E. coli is typically transformed using pBR322, a plasmid derived from an E. coli species (see, e.g., Bolivar et al . , 1977).
  • the pBR322 plasmid contains genes for ampicillin and tetracycline resistance and thus provides easy means for identifying transformed cells.
  • the pBR plasmid, or other microbial plasmid or phage must also contain, or be modified to contain, promoters which can be used by the microorganism for expression.
  • promoters most commonly used in recombinant DNA construction include the B-lactamase (penicillinase) and lactose promoter systems (Chang et al . , 1978; Itakura et al . , 1977; Goeddel et al . , 1979) and a tryptophan (trp) promoter system (Goeddel et al . , 1979; EPO Appl . Publ . No. 0036776).
  • B-lactamase penicillinase
  • lactose promoter systems Chang et al . , 1978; Itakura et al . , 1977; Goeddel et al . , 1979
  • trp tryptophan
  • eukaryotic microbes such as yeast cultures may also be used.
  • Saccharo yces cerevisiase, or common baker's yeast is the most commonly used among eukaryotic microorganisms, although a number of other strains are commonly available.
  • the plasmid YRp7 for example, is commonly used (Stinchcomb et al., 1979; Kingsman et al . , 1979; Tschemper et al . , 1980).
  • This plasmid already contains the trpl gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan for example ATCC No. 44076 or PEP4-1 (Jones, 1977) .
  • the presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
  • Suitable promoting sequences in yeast vectors include the promoters for 3-phosphoglycerate kinase (Hitzman et al . , 1980) or other glycolytic enzymes (Hess et al . , 1968; Holland et al .
  • the termination sequences associated with these genes are also ligated into the expres- sion vector 3' of the sequence desired to be expressed to provide polyadenylation of the mRNA and termination.
  • promoters which have the additional advantage of transcription controlled by growth conditions are the promo- ter region for alcohol dehydrogenase 2, isocytochrome C, acid phosphatase, degradative enzymes associated with nitrogen metabolism, and the aforementioned glyceraldehyde-3 -phosphate dehydrogenase, and enzymes responsible for maltose and galactose utilization.
  • Any plasmid vector containing a yeast- compatible promoter, origin of replication and termination sequences is suitable.
  • cultures of cells derived from multicellular organisms may also be used as hosts.
  • any such cell culture is workable, whether from verte- brate or invertebrate culture.
  • interest has been greatest in vertebrate cells, and propagation of vertebrate in culture (tissue culture) has become a routine procedure in recent years (Tissue Culture, 1973) .
  • useful host cell lines are VERO and HeLa cells, Chinese hamster ovary (CHO) cell lines, and W138, BHK, COS-7 293 and MDCK cell lines.
  • Expression vectors for such cells ordinarily include (if necessary) an origin of replication, a promoter located in front of the gene to be expressed, along with any necessary ribosome binding sites, RMA splice sites, polyadenylation site, and transcriptional terminator sequences.
  • control functions on the expression vectors are often provided by viral material .
  • viral material For example, commonly used promoters are derived from polyoma, Adenovirus 2, and most frequently Simian Virus 40 (SV4.0) .
  • the early and late promoters of SV40 virus are particularly useful because both are obtained easily from the virus as a fragment which also contains the SV40 viral origin of replication (Fiers et al . , 1978) . Smaller or larger SV40 fragments may also be used, provided there is included the approximately 250 bp sequence extending from the Hindlll site toward the Bgll site located in the viral origin of replication.
  • promoter or control sequences normally associated with the desired gene sequence provided such control sequences are compatible with the host cell systems.
  • An origin of replication may be provided either by construction of the vector to include an exogenous origin, such as may be derived from SV40 or other viral (e.g., Polyoma, Adeno, VSV, BPV) or may be provided by the host cell chromosomal replication mechanism. If the vector is integrated into the host cell chromosome, the latter is often sufficient .
  • an exogenous origin such as may be derived from SV40 or other viral (e.g., Polyoma, Adeno, VSV, BPV) or may be provided by the host cell chromosomal replication mechanism. If the vector is integrated into the host cell chromosome, the latter is often sufficient .
  • polypeptide monomer constructs Upon production of the polypeptide monomer constructs it may be necessary to process the polypeptides further, e.g. by introducing non-proteinaceous functions in the polypeptide, by subjecting the material to suitable refolding conditions (e.g. by using the generally applicable strategies suggested in WO 94/18227) , or by cleaving off undesired peptide moieties of the monomer (e.g. expression enhancing peptide fragments which are undesired in the end product) .
  • the methods for recom- binantly producing the monomer polypeptide construct of the invention are also a part of the invention, as are the vectors carrying and/or being capable of replicating the nucleic acids according to the invention in a host cell or a cell-line.
  • the expression vector can be e.g. a plasmid, a cosmid, a minichromosome, or a phage.
  • vectors which are integrated in the host cell/cell line genome after introduction in the host are especially interesting.
  • the host cell can be a microorganism such as a bacterium, a yeast, or a protozoan, or a cell derived from a multicellular organism such as a fungus, an insect cell, a plant cell, or a mammalian cell.
  • a microorganism such as a bacterium, a yeast, or a protozoan
  • a cell derived from a multicellular organism such as a fungus, an insect cell, a plant cell, or a mammalian cell.
  • cells from the bacterial species Escherichia , Bacillus and Salmonella and a preferred bacterium is E. coli .
  • Yet another part of the invention relates to a stable cell line producing the polypeptide part of a monomer polypeptide construct according to the invention, and preferably the cell line carries and expresses a nucleic acid of the invention.
  • the invention also pertains to an oligomer which is comprised of two monomer polypeptide constructs according to the invention which comprises at least three TTSEs, or which is comprised of three monomer polypeptide constructs according to the invention which each only contain one single TTSE.
  • the oligomers of the invention are stable at temperatures up to 70 °C and it is therefore especially preferred that the oligomers of the invention are stable at temperatures above physiologi- cal ones, e.g. that the oligomers are stable in the temperature range 50-70°C.
  • Also a part of the invention is a method for preparing a dimeric oligomer of the invention which comprises
  • a monomer polypeptide construct which includes two TTSEs construct 1
  • a monomer polypeptide construct which includes only one TTSE construct 2
  • effecting the two TTSE's of construct 1 to complex with the TTSE of construct 2 this can be done by thermal treatment, i . e . heating to a temperature which ensures denaturation followed by subsequent cooling allowing renaturation, or this can be done by dena- turing/renaturing effected by changes in the chemical environment
  • the method for producing a trimeric oligomer is also a part of the invention and comprises the steps of
  • the invention also pertains to a kit comprising
  • a first package comprising at least one container means, each at least one container means containing a monomer polypeptide construct of the invention
  • a second package comprising at least one container means, each at least one container means in the second package containing a monomer polypeptide construct of the invention, the second package being different from the first package with respect to choice and/or number of monomer polypeptide constructs included therein, and optionally
  • a third package comprising at least one container means, each at least one container means in the third package, containing a monomer polypeptide construct of the inven- tion, the second package being different from the first and second packages with respect to choice and/or number of monomer polypeptide constructs included therein.
  • the at least one container means in each package contains mutually distinct monomer polypeptide con- structs, and it is especially preferred that all container means comprised in the kit comprises mutually distinct polypeptide constructs.
  • a very important aspect of the invention is the possibility of generating a system designed especially for the individual circumstances.
  • the basic idea is that the artificial selection of heterologous moieties and optionally active components, and functional entities result in a unique system as will be further disclosed in the following.
  • TTSE as a vehicle for assembling monovalent scFv or Fab antibody fragments into oligomeric and multivalent entities offer design advantages also in terms of generating chimaeric artificial antibodies having desirable pharmacokinetic and pharmacodynamic properties.
  • Small derivatives like monomeric scFv fragments or bivalent
  • minibodies are rapidly cleared from the circulatory system, whereas complete Igs stay for very much longer. Conversely, small derivatives like scFv and minbodies exhibit better extravasation properties. It is therefore expected that antibodies of a desired specificity may be optimized for particular diagnostic or therapeutic needs by engineering the pharmacological properties, using the TTSE as a vehicle for controlled oligomerization of e.g. scFv fragments.
  • TTSE conjugated scFv fragment could be designed to exhibit strong multivalent binding to the tumour and rapid clearance of excess conjugate from circulation.
  • the present invention also relates to the use of a monomer polypeptide construct or to a an oligomer according to the present invention as a vehicle for assembling antibody fragments into oligomeric or multivalent entities for generating chimeric artificial antibodies having preselected pharmacokinetic and/or pharmadynamic properties .
  • the delivery system e.g a liposome is supplied with a molecular unit, an "infector or transfector" ligand, recognized by a internalizing receptor unit specific for the target cells.
  • cells displaying endocytotic receptors like members of the LDL family of receptors may be even more efficiently infected or transfected either by including a TTSE unit in the antibody containing heteorimer or in an independent TTSE unit conjugated to one or more of the domains of the Receptor Associated Protein, RAP, (Ellgaard, L., Holtet, T.L., Nielsen, P.R., Etzerodt, M . , Gliemann, J. & Th ⁇ gersen, H.C. Eur J Biochem. 1997, vol 244, 544-551) which is recognized as a ligand to all receptors in this abundant family of endocytosis-mediating receptors.
  • RAP Receptor Associated Protein
  • the invention is directod to the use of a monomer polypeptide construct or to an oligomer according to the invention for targeted gene therapy involving selective delivery of the material for transfection or infection of the specific population of cells.
  • TTSE-mediated gene therapy would be the deployment of a viral vector that would find no other targets in the patient but the cells displaying the artificial receptor complex.
  • the invention is directod to the use of a monomer polypeptide construct or to a an oligomer construct according to the invention wherein the at least one heterologous moity comprises a moiety selected from a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, and wherein the gene therapy involves the delivery of nucleic acids to the desired population of cells by use of a viral vector directed to cells displaying the artificial receptor complex corresponding to the heterologous moity.
  • the invention is directod to the use of a monomer polypeptide construct or to a an oligomer construct according to the invention wherein at least one TTSE is modifyed with a membrane integrating or associating entity having affinity to the specific population of cells in the body relevant for the gene therapy.
  • the complex may furthermore be formulated "in the field" as and when needed.
  • TTSEs In many receptor-mediated signal transduction pathways signals are triggered by the clustering of receptor molecules on the cell membrane.
  • the TTSEs therefore have important applications in the study and exploitation of receptor signalling, as ligands may be presented as oligomers by conjugation to a TTSE unit.
  • a further advantage of the display tecnology discribed above relates to the fact that it is specially useful for selection on the basis of a relatively low affinity because of the entropic benefit contribution obtained by the proximity of the tree binding moities in confined spatial arrangement. Accordingly, the present invention in an important aspect, also relates to protein library technology wherein the TTSE's discribed above are utilized.
  • trimerisation of candidated recombinant ligands is especially important as, for many receptors, the intracellular signal is induced by receptor clustering, which is only brought about if the external ligand exhibits multivalent binding to the receptor, so as to bridge two or more receptor molecules.
  • the monomer polypeptide construe or the oligomer construct according to the invention is for targeted gene therapy involving selective delivery of the material for transfection or infection of the specific population of cells.
  • Tthe at least one heterologous moity may comprise a moiety selected from a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, and wherein the gene therapy involves the delivery of nucleic acids to the desired population of cells by use of a viral vector directed to cells displaying the artificial receptor complex corresponding to the heterologous moity.
  • the monomer polypeptide construct and/or the oligomer may be used as a component of a chimaeric product having low antigenicity in humans.
  • the construe is of human origin it is believed that the antigenicity in humans is low relative to formulations comprising on or more components of non-human origin.
  • One primary use of a monomer polypeptide construct or a an oligomer according to the invention is for delivering an imaging or toxin-conjugated antibody to a target such as a tumor, or use as a vehicle delivering an substance to a target cell or tissue, as a vehicle for assembling antibody fragments into oligomeric or multivalent entities for generating chimeric artificial antibodies having preselected pharmacokinetic and/or pharmadynamic properties.
  • the substance in question being one or more selected from the group of heterologous moities as well a pharmaceutical .
  • a labelled construct wherein the label is coupled to one or to of the TTSE monomer units is within the scope of the invention.
  • an important and surprising use of the monomer polypeptide construct or the oligomer according to the pesenent invention is for protein library technology, such as phage display technology.
  • the present invention also relates to any polynucleotid molecule such as a RNA, DNA or PNA as well as any vector encoding one or more TTSE.
  • a further use according to invention includes preparation and use of a pharmaceutical composition comprising the TTSE construct and optionally a pharmaceutically acceptable excipient.
  • the composition may be administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal, vaginal or conjunctival tissue, the intranasal route, the pulmonary route, the transdermal route, the intramuscular routed, subcutaneous route, intratechal route, inoculation into tissue such as a tumour, or by an implant.
  • the monomer polypeptide construct or the oligomer is in a preferred embodiment comprised in a liposome.
  • the treating or preventing of a disease may by a further aspect comprising administering to the subject in need thereof an effective amount of a pharmaceutical composition referred to above.
  • a pharmaceutical composition referred to above includes the case wherein at least one TTSE is modified with a membrane integrating or associating entity having affinity to the specific population of cells in the body relevant for the gene therapy.
  • the present invention includes a method wherein the monomer polypeptide construct or the oligomer is administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal og vaginal tissue, intranasal route, the pulmonary route, the transdermal route, intramuscular, subcutaneous, intratechal, the buccal, inoculation into tissue such as a tumour, or by an implant.
  • the present invention is also relating to the field of dianosing as the skilled person would easyly recognice, that the TTSE disclosen in the present inventiion may also refer to a method for diagnosis comprising a construct comprising the monomer polypeptide construct or the oligomer, together with a diagnosing component coupled thereon.
  • the plasmid clone pT7H6FXTN123 (Example 2) was used as template for amplification in two Polymerase Chain Reactions (PCR) (Saiki et al . , 1988) with the primer pairs trip-N (SEQ ID NO: 1) and trip-Ca (SEQ ID NO: 2) and trip-N (SEQ ID NO: 1) and trip-Cb (SEQ ID NO: 3) , respectively.
  • PCR Polymerase Chain Reactions
  • the amplified DNA fragments, tripa comprising nucleotide sequences encoding an IQGR cleavage site for the restriction protease FX a (SEQ ID NO: 4) followed by two sites for the restriction nucleases Bglll and Kpnl, the nucleotide sequence encoding the tetranectin polypeptide sequence for Glu 1 to Lys 52 (SEQ ID NO: 5) followed by recognition sites for the three re- striction endonucleases BamHI, Hindlll, and EcoRI , respectively, and tripb, comprising nucleotide sequences encoding an IQGR cleavage site for the restriction protease FX a (SEQ ID NO: 4) followed by two sites for the restriction nucleases Bglll and Kpnl, the nucleotide sequence encoding the tetra- nectin polypeptide sequence for Glu 1 to Val 49 (SEQ ID NO: 6) followed by recognition sites for the three restriction
  • Tetranectin localisation of the trimer is ing structural element and stabili ty of the triple alpha helical coiled coil .
  • the cDNA encoding the reading frame corresponding to the mature tetranectin single chain was cloned by specific amplification in a Polymerase Chain Reaction (PCR) (Saiki et al . , 1988) of the nucleotide sequences from amino acid residue Glul to Vall ⁇ l using 1 st strand oligo-dT primed cDNA synthesized from total human placental RNA as template.
  • Primers used in the PCR were SEQ ID NO : 8 and SEQ ID NO: 9.
  • RNA extraction and cDNA synthesis were performed using standard procedures.
  • the amplified reading frame encoding the monomer subunit of tetranectin was at the 5' -end, via the PCR-reaction, linked to nucleotide sequences encoding the amino acid sequence SEQ ID NO: 10 which constitute an IEGR cleavage site for the bovine restriction protease FX a (Nagai, and Th ⁇ gersen, 1987) .
  • a glycine residue was, due to the specific design of the 5' -PCR primer (SEQ. ID NO. 8), inserted between the C-terminal arginine residue of the FX a cleavage site (SEQ ID NO. 10) and the tetranectin Glul-resi- due.
  • the amplified DNA fragment was subcloned into the E. coli expression vector pT 7 H 6 (Christensen et al . , 1991) producing the plasmid pT 7 H 6 FX-TN123 expressing the tetranectin monomer H6FXTN123 (SEQ ID NO: 25) and into pT 7 CIIH 6 , which is a derivative of pT 7 H 6 , where the amino-terminal 32 amino acid residues of the lambda CII protein (SEQ ID NO. 11) are inserted 5' of the six histidine residues (SEQ ID NO. 12) as outlined in Fig.
  • H6FXTN12 comprising the tetranectin amino acid residues Glul to Val49 (SEQ ID NO: 6)
  • H6FXTN23 comprising the tetranectin amino acid residues Vail7 to Vall ⁇ l (SEQ ID NO: 7)
  • H6FXTN3 (SEQ ID NO: 30) comprising the tetranectin amino acid residues Ala45 to Vall ⁇ l (SEQ ID NO: 7) .
  • each of the plasmids pT 7 H 6 FX-TN123 , pT 7 CIIH 6 FX-TN123 , pT 7 H 6 FX-TN12 , pT 7 H 6 FX-TN23, and pT 7 H 6 FX-TN3 were grown in medium scale (4 x 1 litre; 2xTY medium, 5 mM MgS0 4 and 100 ⁇ g ampicillin) in E. coli BL21 cells, as described by Studier et al . (1990). Exponentially growing cultures at 37°C were at OD 600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation.
  • the protein pellet was dissolved in a buffer containing 6M guanidinium chloride, 50 mM Tris-HCl pH 8 and 0.1 M dithio- erythriol .
  • a buffer containing 6M guanidinium chloride 50 mM Tris-HCl pH 8 and 0.1 M dithio- erythriol .
  • the crude protein preparation was applied to a Ni 2+ activated NTA-agarose column (Ni 2+ NTA-aga- rose, 75 ml pre-washed with 8 M urea, 1 M NaCl, 50 mM
  • H6FXTN123 Tris-HCl pH 8, and 10 mM 2-mercaptoethanol for purification (Hochuli et al . , 1988) and refolding of the fusion proteins, H6FXTN123, CIIH6FXTN123 , H6FXTN12 , H6FXTN23 , and H6FXTN3.
  • the NTA-agarose matrix was loaded into a column and "charged" with Ni 2+ by slowly passing through 5 column volumes of a 10% NiS0 4 solution.
  • the amount of Ni 2+ on the NTA-agarose matrix, prepared by this procedure, has been determined to 14 ⁇ mol per ml matrix.
  • After charging the Ni 2+ NTA-agarose column was washed with two column volumes of water, one column volume of 1 M Tris-HCl pH 8 and two column volumes of loading buffer before stirred mixing of the Ni 2+ NTA-agarose matrix with the crude protein extracts in a breaker for 15 to 30 min. All buffers prepared for liquid chromatography were degassed under vacuum prior to addition of reductant and/or use .
  • Ni 2+ NTA-agarose matrix - crude extract mixture was packed in standard glass columns for liquid chromatography (internal diameter: 2.6 cm) to a volume of approximately 40 ml.
  • the columns were washed with 200 ml of 8 M urea, 1 M NaCl, 50 mM Tris-HCl pH 8, and 10 mM 2-mercaptoethanol (Buffer I) and 100 ml 6 M guanidinium chloride, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol (Buffer II) and the adsorbed tetranectin derived fusion proteins H6FXTN123, H6CIIFXTN123 , H6FXTN23, and H6FXTN3 refolded using the cyclic refolding procedure as described (Th ⁇ gersen et al . , WO 94/18227).
  • the fusion protein H6FXTN12 was refolded by removing the guanidinium chloride and 2-mercaptoethanol of buffer II in a gradient over 5 column volumes into 50 mM Tris-HCl pH 8 and 0.5 M NaCl. After completion of the refolding procedures the tetranectin derived fusion proteins were eluted from the
  • the tetranectin fusion proteins H6FXTN123, H6FXTN23, and H6FXTN3 were cleaved with FX a at 4°C overnight in a molar ratio of 1:300. After FX a cleavage the protein samples were concentrated 10 fold by ultrafiltration on YM10 membranes (Amicon) .
  • the recombinant tetranectin derivatives TN123, TN23, and TN3 were isolated by ion-exchange chromatography on Q-Sepharose (Pharma- cia, Sweden) in a linear gradient over 10 column volumes from 10 mM Tris-HCl pH 8 , 2 M CaCl 2 to 10 mM Tris-HCl pH 8 , 2 mM CaCl 2 , and 0.5 M NaCl.
  • the fusion proteins H6CIIFXTN123 and H6FXTN12 were likewise concentrated 10 fold by ultrafiltration on YM10 membranes and gelfiltrated into buffer containing 25 mM Tris- HCl pH 8, 25 mM NaCl, and 2 mM CaCl 2 , before purification of correctly folded monomer by ion-exchange chromatography on Q-Sepharose as described.
  • TN123 Recombinant full length tetranectin (TN123) produced by these procedures have been analyzed with respect to binding to plasminogen kringle 4 and immobilised fucoidan, expression of antigenic sites, and localization of disulphide bridges. In all criteria tested the produced TN123 behaved identically to isolated naturally human tetranectin (data not shown) . Furthermore TN123 and TN3 have been crystallized (Kastrup et al . , 1996) and the structure has also been determined, all of which bear evidence that a single unique and biologically active folded product had indeed been produced.
  • tetranectin derivatives TN123, TN3 , and TN23 together with the fusion proteins CIIH6FXTN123 and H6FXTN12 or mixtures of these derivatives at 1 mg/ml concentrations in cross-linking buffer (0.1 M Sodium borate, pH 9.1) were incubated with dimethylsuberimidate (DMSI, Sigma) . 10 ⁇ l aliquots of protein solution were incubated with 1 ⁇ l ali- quots of DMSI stock solution (20 mg/ml in cross -linking buffer) for 30 minutes at 25°C before addition of 2 ⁇ l quenching ) ) to to H P 1
  • cross-linking buffer 0.1 M Sodium borate, pH 9.1
  • DMSI dimethylsuberimidate
  • TN123 Dimeric TN23 molecules found at low abundance in the sample probably reflects contaminating misfolded disulphide bridged dimers .
  • the fusion protein H6FXTN12 formed homo-trimers upon cross- linking and generated hetero-trimers with TN123 after subunit exchange. Because of the difference in size of full length tetranectin (TN123) and H6FXTN12 the possible nine protein bands resulting from chemical cross-linking are: The four trimers [(TN123) 3 , (TN123) 2 (H6FXTN12) , (TN123 ) (H6FXTN12) 2 , and (H6FXTN12) 3 ] at approx.
  • tetranectin like the collectin group of C-type lectins, is a trimeric molecule and that amino acid residues directly shown to be involved in trimerisation of the tetranectin monomer are located in exon 2 of the protein (Vall7 - Val49) . Furthermore subunit exchange between the trimeric molecules could only be observed after heat denaturation.
  • Glul to Aspl6 of tetranectin are critical to chemical cross-linking with DMSI and more important appear to stabilize the trimeric molecule because the cross-linking analysis of the mixture TN123 and TN23 showed no decrease in TN123 formation after heat denaturation and possible subunit exchange (Fig. 11) .
  • the stability of the tetranectin trimer was corroborated by a cross-linking analysis with DMSI at different temperatures. Fifteen ⁇ l TN123 at 0.3 mg/ml concentration was pre-incubated 10 min. at either 37°C, 50°C, 60°C, or 70°C before addition of 2 ⁇ l DMSI (20 mg/ml) . The reaction was allowed to proceed for 15 min.
  • Wiborg harbouring a human ubiquitin cDNA insert (SEQ ID: 16) was used as template and SEQ ID NO: 17 together with SEQ ID NO: 18 were used for amplification in a Polymerase Chain Reaction (PCR) (Saiki et al . , 1988) of the nucleotide sequence encoding amino acid residue Ilel to Gly76 of human ubiquitin (SEQ ID: 19) .
  • the amplified DNA fragment was after digestion with the restriction endonucleases BamHI and Hindlll ligated into the BamHI and Hindlll sites of pTtripb (Example 1) yielding pTtripb-UB (Fig. 13) using standard procedures.
  • the plasmid pTtripb-UB was grown in medium scale (4 x 1 litre; 2xTY medium, 5 mM MgS0 4 and 100 ⁇ g ampicillin) in E. coli BL21 cells, as described by Studier et al . (1990) . Exponentially growing cultures at 37°C were at OD 600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation.
  • Cells were resuspended in 150 ml of 0.5 M NaCl, 10 mM Tris-HCl pH 8, and 1 mM EDTA pH 8. Phenol 00 ml adjusted to pH 8) was added and the mixture sonicated to extract the total protein. Protein was precipitated from the phenol phase by 2.5 volumes of ethanol and centrifugation. The protein pellet was dissolved in a buffer containing 6 M guanidinium chloride, 50 mM Tris-HCl pH 8 and 0.1 M dithio- erythriol .
  • the H6FXtripb-UB fusion protein was eluted from the Ni 2+ NTA-agarose columns with a buffer containing 0.5 M NaCl, 50 mM Tris-HCl, 25 mM EDTA pH 8 and gel filtrated on a Sephadex G50 column (Pharmacia) into 0.1 M Sodium borate pH 9 buffer for chemical cross-linking analysis with DMSI.
  • the cross-linking analysis experiment was designed both to analyze the oligomeric status of the chimeric fusion protein and the thermal stability of the presumed fusion protein trimer as described in Example 2: Samples of 15 ⁇ l H6FXtripb- UB fusion protein, at approximately 1.0 mg/ml concentration, were pre-incubated 10 min. at either 37°C, 50°C, 60°C, or 70°C before addition of 2 ⁇ l DMSI (20 mg/ml) . The reactions were allowed to proceed for 15 min. before quenching by addition of 5 ⁇ l of 3 M Tris-HCl pH9.1 and the reaction mixtures were allowed to cool to room temperature. SDS-PAGE analysis of reduced samples (Fig.
  • fusion protein H6FXtripb-UB is a trimer in solution (monomer at 17 kDa, dimer at 35 kDa, and trimer at 43 kDa) and (2) that a substantial amount of trimer molecules is present even at 70°C.
  • the appearance of other larger cross-linking pro- ducts is probably due to cross-linking of trimers via the ubiquitin part of the fusion protein.
  • a plasmid clone, pUC19MCH/CEA6 generously provided by Dr. Kevin Pritchard, Cambridge Antibody Technology Ltd., Mel- bourn, UK, harbouring a nucleotide sequence (SEQ ID: 20) encoding the CEA6 antibody in single-chain Fv (scFv) format, followed in sequence by a "myc tag" (which is a general purification/detection handle) , was used as template in Polymerase Chain Reactions (PCR) (Saiki et al .
  • PCR Polymerase Chain Reactions
  • PCR fragment "A” was treated with restrictions enzymes BamHI and Kpnl and the resulting fragment was inserted into Bglll/Kpnl cut pTripb (Example 1) to obtain the vector pTH6FXscFv(CEA6) -tripb (Fig. 15) encoding the H6FXscFv (CEA6) - TRIPB fusion protein (Fig. 16) .
  • PCR fragment "B” was treated with restriction enzymes BamHI and Hindlll and the resulting fragment was inserted into BamHI and Hindlll cut pTripb (Example 1) to obtain the vector pTH6FXtripb-scFv(CEA6) (Fig. 17) encoding the H6FXTRIPB-scFv (CEA6) fusion protein (Fig.18, SEQ ID NO: 33) using standard procedures.
  • H6FXscFv (CEA6) -TRIPB (SEQ ID NO: 32), H6FXTRIPB-scFv (CEA6) (SEQ ID NO: 33) and H6FXscFv(CEA6) -TRIPB-scFv (CEA6) (SEQ ID NO: 34)
  • the plasmids pTH6FXscFv(CEA6) -TRIPB, pTH6FXtripb-scFv (CEA6 ) and pTH6FXscFv(CEA6) -tripb- scFv(CEA6) were grown in small scale (1 litre,- 2xTY medium, 5 mM MgS04 and 100 ⁇ g ampicillin) in E.
  • coli BL21 cells as described by Studier et al . (1990). Exponentially growing cultures at 37°C were at OD 600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation. Cells were resuspended in 50 ml of 0.5 M NaCl, 50 mM Tris-HCl pH 8, and 1 mM EDTA pH 8. Phenol (50 ml adjusted to pH 8) was added to each and the mixtures were sonicated to extract total protein.
  • Washing buffer (6 M guanidine-HCl, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol) was then flowed through the columns until stable baselines were obtained. Virtually pure fusion proteins could then be eluted by applying a pH gradient to each column (1000 ml gradient in 8 M urea and 10 mM 2-mercaptoethanol obtained by linear (per volume) mixing of solutions containing 50 mM sodium di-hydro- genphosphate (pH 5 buffer) and 50 mM di-sodium hydrogenphos - phate (pH 8 buffer) .
  • each column was washed with 300 ml buffer containing 0.5 M NaCl and 50 mM Tris-HCl pH 8 to wash away glutathione.
  • the refolded fraction of each protein was then eluted from the NTA-agarose matrix by addition of 20 mM EDTA to the elution buffer.
  • each pure and correctly refolded fusion protein was recovered in yields of 2-6 mg per litre of culture grown.
  • Each protein may be shown by analytical gel filtration, chemical cross -linking analysis, by in vitro affinity measurements and by in vivo efficacy to form a stable homotrimeric molecular complex:
  • the oligomeric status of the H6FXtripb-scFv- (CEA6) fusion protein was analyzed by chemical cross-linking analysis with DMSI:
  • samples of H6FXtripb-scFv- (CEA6) at 0.34 mg/ml and TN123 at 0.28 mg/ml in 0.1 M Sodium borate were incubated at room temperature with increasing amounts (0 - 40 ⁇ g in 12 ⁇ l in total) of DMSI for 30 min.
  • H6FXtripb-scFV- (CEA6) fusion protein of approximately 38 kDa, is hereby shown to be a trimer in solution.
  • Gly Ser lie Gin Gly Arg 1 5
  • Glu Pro Pro Thr Gin Lys Pro Lys Lys lie Val Asn Ala Lys Lys Asp 1 5 10 15 Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
  • Ala Arg lie Ala Tyr Lys Asn Trp Glu Thr Glu lie Thr Ala Gin Pro

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Abstract

The present invention relates to the design of trimeric polypeptides using polypeptide structural elements derived from the tetranectin protein family, and their use in rational de novo design and production of multi-functional molecules including the application of the multi-functional molecules in protein library technology, such as phage display technology, diagnostic and therapeutic systems, such as human gene therapy and imaging. The trimeric polypeptides being constructed as a monomer polypeptide construct comprising at least one tetranectin trimerising structural element (TTSE) which is covalently linked to at least one heterologous moiety, said TTSE being capable of forming a stable complex with two other TTSEs; or as an oligomer which is comprised of two monomer polypeptide constructs as mentioned above, and which comproses three TTSEs or a multiplum of three TTSEs, or which is comprised of three monomer polypeptide constructs.

Description

TRIMERISING MODULE
The present invention relates to the design of trimeric polypeptides using polypeptide structural elements derived from the tetranectin protein family, and their use in rational de novo design and production of multi-functional molecules includng the application of the multi-functional molecules in protein library technology, such as phage display technology, diagnostic and therapeutic systems, such as human gene therapy and imaging .
BACKGROUND OF THE INVENTION
Tetranectin is a Ca2+ -binding trimeric C-type lectin which is present in blood plasma and from the extracellular matrix of certain tissues. The tetranectin group of proteins comprises tetranectin isolated from man and from mouse and the highly related C-type lectin homologues isolated from the cartilage of cattle (Neame and Boynton, database accession number PATCHX:u22298) and from reef shark (Neame et al . , 1992, Neame et al . , 1996 and database accession number p26258 and PIR2:A37289) .
The mature tetranectin polypeptide chain of 181 amino acid residues is encoded in three exons as shown by molecular cloning and characterisation of the gene (Berglund & Peter- sen, 1992; Wewer & Albrechtsen, 1992) . Exon 3 of the human tetranectin gene encodes a separate functional and structural unit, a single long-form so-called carbohydrate recognition domain (CRD) , with three intra-chain disulphide bridges. The tetranectin CRD is considered to belong to a distinct class of C-type lectins (Day, 1994) clearly related to C-type lectins by sequence homology, conservation of disulphide topology (Fuhlendorff et al , 1987) and by the presence of an almost conserved suit of amino acid residues known to be involved in binding of calcium ions . A published poster (Holtet et al 1996) has proposed tetranectin to be a trimer and that trimerisation is governed by the peptide encoded by exon 1. The peptide encoded by exon 1 was proposed to be "necessary and sufficient to govern trimerisa- tion" whereas the polypeptide encoded by exon 2 was proposed as being "involved in lysine-sensitive binding to plasminogen" .
Tetranectin was first identified as a plasma protein binding to plasminogen by binding to the kringle-4 domain of plasminogen. Recent unpublished results (Graversen et al . , manuscript for PNAS) proves (JL) that the site in tetranectin involved in binding to plasminogen resides entirely in the CRD-domain (encoded by exon 3), (2.) that binding is calcium sensitive, and (3.) that the kringle-4 binding site in tetranectin overlaps the putative carbohydrate binding site of the CRD domain. Hence, there is now surprising definitive evidence that TN exons 1 and 2, i.e. the trimerisation unit in TN does not exihibit any plasminogen-binding affinity. Accordingly, an artificial protein containing a TTSE unit as part of its architecture is not expected to interact with plasminogen or plasmin due to properties inherited from tetranectin.
Tetranectin has also been reported to bind to sulfated polysaccharides like heparin (Clemmensen (1989) Scand J. Clin. Lab. Invest, vol 49:719-725). We have new results showing that the CRD domains of tetranectin are not involved in this protein-polysaccharide interaction. In fact, the site in tetranectin is located in the N-terminal region of exon 1 and may be abolished by removal or mutagenis of N-terminal lysine residues (Graversen et al . , manuscript), processes that do not inhibit trimerisation. TTSEs that include most or all of TN exon 1 therefore confer an affinity for sulfated polysaccharides to any designed protein which encompasses such a TTSE as part of its structure. If desired, however, this affinity can be reduced or abolished by N-terminal truncation or mutagenesis of lysine residues in the part of the TTSE that corresponds to the N-terminal 8-10 amino acid residues of exon 1 (Graversen et al . , unpublished) . With respect to gene therapy which is also withing the scope of the present invention, there is only a limited number of basic strategies for gene therapy which show some promise in preclinical models so far. The two major strategies e.g for the treatment of malignant tumors are cytokine-gene aided tumor vaccination and selective prodrug activation. Whereas the first strategy relies on the strong immunostimulatory effect of a relatively small number of genetically modified cytotoxic T cells or tumor cells, the second one is based on conversion of a nontoxic prodrug into a toxic product by an enzyme-encoding gene where the toxic effect is exerted also on non-transduced dividing tumor cells due to a so-called bystander effect. Alternatively, strategies can be envisaged where the malignant phenotype of a cell is reversed by either inactivating an oncogene or reestablishing an inactivated tumor suppressor gene. In both cases, highly efficient gene transfer to the cells in a tumor is required. Although high efficiencies of gene transfer can be obtained in vi tro and even in vivo under certain circumstances, correction of the malignant phenotype by reversing the major oncogenic change in the tumor cells is unlikely to result in normal cells. Thus, selective induction of tumor cell death by use of the present invention would be preferable, and the development of methods enabling such induction will be of great importance.
A major problem in connection with the gene therapy is the incorporation of foreign material into the genome. Viruses, however, have only been partially successful in overcoming this problem. Hence the initial efforts at gene therapy are still directed towards engineering viruses so that they could be used as vectors to carry therapeutic genes into patients. In the still very immature in vivo method of somatic gene therapy, where a vector could be injected directly into the bloodstream, or more preferably by transmucosal delivery, the present invention may be utilized due to the surprising number of ways the gene therapy may be targeted. For many gene-therapy applications in the future, it is probable that a synthetic hybrid system will be used that incorporates engineered viral component for target-specific binding and core entry, immunosuppressive genes from various viruses and some mechanism that allows site-specific integration, perhaps utilizing AAV sequences or an engineered retroviral integrase protein. In addition, regulatory sequences from the target cell itself will be utilized to" allow physiological control of expression of the inserted genes. All these components would be assembled in vitro in a liposome-like formulation with additional measures taken to reduce immunogenicity such as concealment by PEG
As mentioned, one of the current problems in gene therapy is the efficient delivery of nucleic acids to as many as possible of a specific population of cells in the body, and it is often not possible to find e.g. an appropriate viral vector that will find that particular cell population efficiently and selectively (Review on aspects of gene therapy: Schaper, W & Ito, W.D. Current Opinion in Biotechnology, 1996, vol. 7, 635-640. Nature Biotechnology 1998 vol 16 is an entire volume dedicated to protein- and gene delivery) .
Given the possibility of in vitro generation of a human antibody against virtually any target antigen by phage technology, it follows that TTSEs, where one of the subunits is modified with a membrane integrating or associating entity, may be used as a practicable tool for generating a viral, bacterial or preferentially artificially assembled lipomal vehicle that will allow selective delivery of the contained material by infection or transfection of any cell population to which such a specific antibody may be generated. Moreover vehicles may, with the use of TTSEs, be individualised by selection of patient specific antibodies or by assembling TTSE units conjugated with scFvs selected from an ensemble of antibodies selected by the particular markers of the disease . SUMMARY OF THE INVENTION
It has surprisingly been found by the present inventors that the human tetranectin polypeptide (and derivatives thereof) is capable of forming very stable trimers which have a number of advantageous characteristics and uses. Notably, the tetranectin molecule includes a trimerising structural element which can be used as carrier of other chemical entities, thereby providing a carrier molecule of a hitherto unseen versatility.
Prior published knowledge in the field of providing trimerising polypeptides of choice includes the disclosure in WO 95/31540 by Hoppe and Reid which describes a trimerisation module derived from collectin coiled coil structures and its application in engineering of artificially trimerised pro- teins . Several interesting areas of application are common to that patent publication and to the present disclosure . However, in several ways the properties of the trimerisation modules derived from the tetranectin protein family as disclosed herein are markedly different in fundamental architec- ture and represent surprisingly improved properties in comparison with the collectin trimerisation unit:
(1) Although the spatial structures of both trimerisation modules at a superficial level appear as similar in that both are ternary coiled coil structures of roughly equivalent spatial size the structural basis for adopting this spatial configuration is markedly distinct between the two groups of proteins. In fact, it is so distinct that the common belief prior to the work of Holtet et al . on cross-linking of human tetranectin (Holtet et al . , 1996) was that this family of proteins were tetrameric (hence the name) . Accordingly/ the sequences of the tetranectin family of trimerisation modules does not conform to the declared common motif delineated for the collectin family (WO 95/31540, page 8) . (2) The thermal stability of the tetranectin trimerisation module (as shown in the examples) is such that the trimer can be shown to exist even at about 60°C (Example 4, trimerised tetranectin) or at about 70°C (Example 3, trimerised ubiqui- tin) , whereas a collectin trimer unit falls apart at about 50-55°C (WO 95/31540, Example 1, page 36 therein) .
(3) Whereas it remains uncertain whether the collectin trimerisation domain possibly allows attachment of fusion partners at C-terminal ends of the trimerisation module, and whereas no example has been reported of successful or claimed successful attachment of a foreign protein (except for the GST fusion partner) to the N-terminal region of the collectin trimerisation module, the information disclosed herein demonstrates that the tetranectin trimerisation module is more versatile in that is allows attachment of foreign proteins to either, as well as to both, terminus or termini simultaneously (Examples 1-4) . This has important consequences as the tetranectin trimerisation module may be deployed to construct molecules that are able to interact (each end with a binding valency up to 3) simultaneously with two bulky interaction partners like e.g. cell surfaces.
(4) The virtual absence of subunit exchange between monomers of a trimer that has been trimerised using the tetranectin trimerisation modules disclosed herein is by first principles of thermodynamics correlated with the surprisingly high thermal stability of the complex. It will hence be apparent that the advantages inherent to the "pick-and-mix" applications of the technology, as disclosed herein, may be used to much greater advantage because of the much longer shelf life expected for the heterofunctional products of the present invention.
The polypeptide constructs CIIH6FXTN123 , H6FXTN123, H6FXTN12, and H6FXTN23 which all involve parts of the tetranectin molecule have previously been prepared (cf . e.g. WO 94/18227) but these constructs have all been provided with a view to
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Fig. 3: Construction of the expression plasmids pTH6FXtripa and pTH6FXtripb.
The amplified DNA fragments tripa and tripb harbouring the tetranectin amino acid sequence (SEQ ID NO: 7) from El to T48 and El to K52, respectively, fused in the 5' end to nucleotide sequences encoding a FXa cleavage site IQGR (SEQ ID NO: 4) and the recognition sites for the restriction endonucleases Bglll and Kpnl , were cut with the restriction enzymes Bell and HindiII and ligated into the BamHI and HindiII sites of the expression plasmid pT7H6 (Christensen et al . , 1991) using standard procedures.
Fig. 4: Predicted amino acid sequence of the fusion proteins H6FXtripa (SEQ ID NO: 28) and H6FXtripb (SEQ ID NO: 29) encoded by the expression plasmids pTH6FXtripa and pTH6FXtripb, respectively.
Fig. 5: Construction of the expression plasmids pTH6FXTN123 and pTCIIH6FXTN123.
The amplified DNA fragment corresponding to the full length, mature tetranectin monomer (SEQ ID NO: 7) from El to V181 fused in the 5' end to nucleotide sequences encoding a FXa cleavage site IEGR (SEQ ID NO: 10) was cut with the restriction enzymes BamHI and Hindlll and ligated into the corresponding sites of the expression plasmids pT7H6 (Christensen et al., 1991) and pTCIIH6 using standard procedures. pTCIIH6 was derived from pT7H6 by substitution of the Ndel - Hindlll fragment of pT7H6 with the Ndel - Hindlll fragment of pLcII (Nagai and Thøgersen, 1987) encoding the first 32 residues of the lambda ell protein MVRANKRNEALRIESALLNKIAMLGTEKTAEG (SEQ ID NO: 11) fused in the 3' end to a nucleotide sequence encoding the H6 sequence GSHHHHHHGS (SEQ ID NO: 12).
Fig. 6: Predicted amino acid sequence of the fusion proteins H6FXTN123 (SEQ ID NO: 25) and CIIH6FXTN123 (SEQ ID NO: 24) encoded by the expression plasmids pTH6FXTN123 and pTCIIH6FXTN123, respectively. Fig. 7: Construction of the expression plasmids pTH6FXTN12, pTH6FXTN23, and pTH6FXTN3.
The amplified DNA fragments corresponding to the tetranectin derivatives TN12 and TN3 from El to V49 and A45 to V181, respectively (SEQ ID NO : 7) fused in the 5' end to nucleotide sequences encoding the FXa cleavage site IEGR (SEQ ID NO: 10) was cut with the restriction enzymes BamHI and Hindlll and ligated into the corresponding sites of the expression plasmids pT7H6 (Christensen et al . , 1991) using standard pro- cedures . The amplified DNA fragment corresponding to the tetranectin derivative TN23 from V17 to V181 (SEQ ID NO: 7) fused in the 5' end to nucleotide sequences encoding the FXa cleavage site IQGR (SEQ ID NO: 4) was cut with the restriction enzymes BamHI and Hindlll and ligated into the corre- sponding sites of the expression plasmids pT7H6 (Christensen et al . , 1991) using standard procedures.
Fig. 8: Predicted amino acid sequence of the fusion proteins H6FXTN12 (SEQ ID NO: 26), H6FXTN23 (SEQ ID NO: 27), and H6FXTN3 (SEQ ID NO: 30) encoded by the expression plasmids pTH6FXTN12, pTH6FXTN12, respectively.
Fig. 9: Gel filtration analysis of TN123, TN23, and TN3 Analytical gel filtration of the recombinant tetranectin derivatives TN123, TN23, and TN3 were performed on a Superose 12 HR 10/30 column (Pharmacia, Sweden) with a total volume of 25 ml in 100 mM NaCl and 50 mM Tris-HCl pH 8 and a flow rate of 0.2 ml/min. Vertical bars at peak maxima identify elution profiles for each of the three proteins .
Fig. 10: Cross-linking analysis of TN123 and CIIH6FXTN123. Samples of TN123, CIIH6FXTN123 and mixtures of both were incubated with DMSI and analyzed by SDS-PAGE (12% gel) .
Before addition of DMSI, protein mixtures were subjected to subunit exchange by incubation at 70°C for varying length of time. Protein marker of 94, 68, 43 and 30 kDa, top to bottom (lane M) . CIIH6FXTN123 fusion protein (lane 1) . TN123 (lane 2) . DMSI treated CIIH6FXTN123 (lanes 3 and 6) . DMSI-treated TN123 (lane 4) . Identical samples of DMSI treated mixtures of CIIH6FXTN123 and TN123 without heat exposure (lanes 5 and 7) and heat treated for 2.5 sec, 15 sec, 2.5 min. and 10 min . , respectively, before treatment with DMSI (lanes 8-11) .
Fig. 11: Cross-linking analysis of the recombinant tetranectin derivatives TN123, TN23, TN3 , and H6FXTN12. The recombinant proteins TN123, TN23,TN3, H6FXTN12 or mix-" tures of TN123 and each of the other were analyzed by SDS- PAGE. Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) . TN123 cross-linked with DMSI (lane 1) . TN123 and H6-rTN12 cross-linked with DMSI without and with heat treatment at 70°C for two min. (lanes 2 and 3) . H6FXTN12 cross-linked with DMSI (lanes 4 and 5) . Mixture of TN123 and H6FXTN12, no cross-linking (lane 6) . Cross-linking of TN123 and TN23 without and with heat treatment at 70 °C for two min. (lanes 7 and 8) . Cross-linking of TN23 (lane 9) . Mixture of TN123 and TN23 without cross-linking (lane 10) . TN123 cross- linked by DMSI (lane 11) . Cross-linking of TN123 and TN3 without and with heat treatment for two min. (lanes 12 and 13) . Cross-linking of TN3 (Lane 14) . Mixture of TN123 and TN3 , no cross-linking (lane 15).
Fig. 12: Cross-linking based analysis of the trimer thermal stability.
In parallel experiments TN123 and the fusion protein H6FXtripb-UB (SEQ ID NO: 31) were cross-linked with DMSI at different temperatures and the samples analyzed by SDS-PAGE. Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) . TN123 without cross-linking (lane 1) . TN123 cross-linked with DMSI for 15 min. at 37°C, 50°C, 60°C, and 70°C (lanes 2 to 5) , respectively. The fusion protein
H6FXtripb-UB (SEQ ID NO: 31) without cross-linking (lane 6) . H6FXtripb-UB cross-linked with DMSI for 15 min. at 37°C, 50°C, 60°C, and 70°C (lanes 7 to 10) , respectively and H6FXtripb-UB incubated at 70°C for 15 min. (lane 11) . Fig. 13: Construction of the expression plasmid pTHδFXtripb- UB.
The amplified DNA fragment comprising the nucleotide sequence (SEQ ID NO: 16) encoding the ubiquitin amino acid sequence (SEQ ID NO: 19) from Q2 to G76 was cut with the restriction enzymes Bell and Hindlll and ligated into the BamHI and Hindlll sites of the expression plasmid pT7H6FXtripb (Example 1) using standard procedures.
Fig. 14: Predicted amino acid sequence of the fusion protein H6FXtripb-UB (SEQ ID NO: 31) encoded by the expression plasmid pTH6FXtripb-UB .
Fig. 15: Construction of the expression plasmid pTH6FXscFV (CEA6) tripb. The DNA fragment, amplified with the primer pair SEQ ID NOs : 21 and 22, comprising the nucleotide sequence SEQ ID NO: 20 encoding the single chain antibody CEA6 , scFV (CEA6) , amino acid sequence from Ql to A261 was cut with the restriction enzymes BamHI and Kpnl and ligated into the Bglll and Kpnl sites of the expression plasmid pT7H6FXtripb (Example 1) using standard procedures.
Fig. 16: Predicted amino acid sequence of the fusion protein H6FXscFV(CEA6) tripb encoded by the expression plasmid pH6FXscFV (CEA6) tripb .
Fig. 17: Construction of the expression plasmid pTH6FXtripbscFX(CEA6) .
The DNA fragment, amplified with the primer pairs having SEQ ID NO: 21 and 23, comprising the nucleotide sequence (SEQ ID NO: 20) encoding the single chain antibody CEA6 , scFV (CEA6) , amino acid sequence from Ql to A261 was cut with the restric- tion enzymes BamHI and Hindlll and ligated into the BamHI and
Hindlll sites of the expression plasmid pT7H6FXtripb (Example 1) using standard procedures. Fig. 18: Predicted amino acid sequence of the fusion protein H6FXtripbscFv(CEA6) encoded by the expression plasmid pH6FXtripbscFv(CEA6) .
Fig. 19: Construction of the expression plasmid pTH6FXscFv(CEA6) tripbscFX (CEA6) .
The DNA fragment, amplified with the primer pair SEQ ID NO: 21 and 23, comprising the nucleotide sequence (SEQ ID NO:" 20) encoding the single chain antibody CEA6 , scFV (CEA6) , amino acid sequence from Ql to A261 was cut with the restriction enzymes BamHI and Hindlll and ligated into the BamHI and Hindlll sites of the expression plasmid pT7H6FXscFv(CEA6) tripb (Example 4) using standard procedures.
Fig. 20: Predicted amino acid sequence of the fusion protein H6FXscFv(CEA6) tripbscFv (CEA6) (SEQ ID NO: 34) encoded by the expression plasmid pH6FXscFv (CEA6) tripbscFv (CEA6) .
Fig. 21: Cross-linking analysis of the H6FXtripbscFv(CEA6) fusion protein (SEQ ID NO: 33) . In parallel experiments the fusion proteins H6FXtripbscFv(CEA6) (SEQ ID NO: 33) and TN123 were cross- linked at room temperature for 30 min. with 0 mg/ml, 0.5 mg/ml, 1.0 mg/ml, 1.5 mg/ml, and 2.0 mg/ml of DMSI, respectively. Lane 1: H6FXtripbscFv(CEA6) without DMSI, H6FXtripbscFv(CEA6) with 0.5 mg/ml DMSI (lane 2), H6FXtripbscFv(CEA6) with 1.0 mg/ml DMSI (lane 3), H6FXtripbscFv(CEA6) with 1.5 mg/ml DMSI (lane 4) and
H6FXtripbscFv(CEA6) with 2.0 mg/ml DMSI (lane 5). Protein marker of 94, 68, 43, 30, 20, and 14.4 kDa, top to bottom (lane M) . Lane 6: TN123 without DMSI, TN123 with 0.5 mg/ml DMSI (lane 7), TN123 with 1.0 mg/ml DMSI (lane 8) TN123 with 1.5 mg/ml DMSI (lane 9) and TN123 with 2.0 mg/ml DMSI (lane 10) .
DETAILED DISCLOSURE OF THE INVENTION ) to t P1 H ι-π o LΠ o ι_π O LΠ
Figure imgf000016_0001
) to to H o Lπ o Lπ o rt rt Hi er p- Φ 3 Φ O
Hi μ- p-
Ω LQ O
3 3 0 Φ
Hi CD P- Ω Ω
3 h-1 cn CD rt cn ft) ti¬ φ ro <i φ 0 3 Hi ft) li¬ ft)
-j 3 o On o
Ω Ω ft) ft) 3 3 Pi cr φ t Ω p, o er cn er cn ft) ti¬ p- ro 3 X Ϊ Ω Φ cr On ft)
3 ft) Q cn
Φ o
Hi
Figure imgf000017_0001
Figure imgf000018_0001
Hi
3
3
Ω er p-
0
3 ø)
TJ P 0
TJ
Φ
Hi rt
Figure imgf000018_0002
Since three TTSEs of naturally occurring human tetranectin forms up a triple alpha helical coiled coil, it is preferred that the stable complex formed by the TTSEs of the invention also forms a triple alpha helical coiled coil.
The "tetranectin family" are polypeptides which share the consensus sequence shown in Fig. 2 or a sequence which are homologous at sequence level with this consensus sequence. Hence, monomer polypeptide constructs of the invention are preferred which comprise a polypeptide sequence which has at least 68% sequence identity with the consensus sequence shown in Fig. 2, but higher sequence identities are preferred, such as at least 75%, at least 81%, at least 87%, and at least 92%.
By the term "heterologous moiety" is herein meant any chemi- cal entity which can be linked covalently to a TTSE and to which the TTSE is not natively covalently bound. Hence, the heterologous moiety can be any covalent partner moiety known in the art for providing desired binding, detection, or effector properties. The heterologous moiety can be a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, an antibody, an antigen binding antibody fragment, or a molecule having antibody characteristics such as e.g. the "diabodies" described in EP-A-0 672 142, or other ligand binding molecules such as avidin or streptavidin, or a lectin; a toxin such as ricin; a detectable label such as a fluorescence labelled molecule, a radioactively labelled molecule, an enzymatically labelled molecule; an in si tu activatable substance, such as a molecule which can be induced by a magnetic field or by radiation to be radioactively or chemically active; an enzyme such as a peroxidase; a radioactive moiety such as a 7-, a- , β~ - , or +-emitting molecule, e.g. a molecule comprising one or more radioactive isotopes selected from 14C, 3H, 32P, 33P, 25S, 38S, 36C1, 22Na, 24Na, 40K, 42K, 43K, and any isotopes conventionally utilized for the purposes of facilitating detection of probes or the purposes of providing localized radiation so as to effect cell death; a cytokine such as an interferon or a leukotriene; PNA; a non-proteinaceous polymer such as a polymeric alkaloid, 11. a polyalcohol, a polysaccharide, a lipid and a polyamine ; a photo cross- linking moiety, i.e. a chemical entity which effects cross- linking upon photo-activation; and a group facilitating conjugation of the monomer polypeptide construct to a target.
The heterologous moiety is preferably covalently linked to the TTSE by via a peptide bond to the N- or C-terminus of the TTSE peptide chain, via a peptide bond to a side chain in the TTSE or via a bond to a cysteine residue, but any way of coupling covalently heterologous material to a polypeptide chain will be useful. The skilled person will know of such possibilities, e.g. by consulting the teachings of WO 95/31540 in this regard which are hereby incorporated by reference .
However, one interesting aspect of the invention relates to a monomer polypeptide construct of the invention comprising two heterologous moieties which are linked via peptide bonds to the N- and C-terminus, respectively. This approach introduces a number of possibilities in terms of e.g. linking larger entities with oligomers of the invention by having specific activities coupled to each end of the monomers (as explained in detail below, the oligomers of the invention may also utilise a version of this principle, where e.g. one N-terminus and one C-terminus of an oligomer are linked via peptide bonds to independent heterologous moieties) .
In general, a complex between two or three monomers are described in the following way: three monomers having one TTSE each forms a trimer designated (1+1+1) , whereas a dimer formed between a monomer with two TTSEs and a monomer .with one TTSE is designated (1+2) . Other (undesired) trimers can of course be formed, e.g. (2+2+1), where two TTSEs are not "in use", but it is preferred that the oligomers of the invention use all of their available TTSEs during complex formation. It should also be noted that the term "monomer polypeptide construct" is meant to designate a single polypeptide chain which may or may not have non-peptide groups coupled covalently to the polypeptide chain, whereas "dimeric polypeptide" or "dimer", "trimeric polypeptide" or "trimer" and "oligomer" (i.e. a dimer or trimer) in the present context are meant to designate non-covalent complexes of monomer polypeptide constructs. I . e . , the traditional definitions of monomers and multimers do not apply in the present specification and claims.
The TTSE as exemplified by exon 2 or exons 1 and 2 of human tetranectin, preferably so modified to allow only hetero- trimerisation between dissimilar (1+1+1) or (1+2) (cf. the below discussion) subunits may be deployed as a general affinity mediator, which can be coupled chemically to each member of a selection of target molecules. After such conjugation with TTSE the target molecules may be homo- or hetero- trimerised as desired for any application. Similar deployment of dimerisation, using as one partner a polypeptide harbour- ing two TTSE sequences in-line, separated by a linker sequence of suitable length and character, may bet yet more advantageous, as in such case absolute control of stoichiometry in complex formation would be possible. Thus, an important embodiment of the invention is a monomer polypeptide construct of the invention comprising 2 TTSEs which are covalently linked by a spacer moiety which allows both of the 2 TTSEs to take part in complex formation with a third TTSE not being part of the monomer polypeptide construct, but equally important is the embodiment of the inven- tion where the monomer polypeptide construct comprises one single TTSE, so as to allow trimerisation between three monomers and hence providing the optimum degree of versatility with respect to the number of functional units which can be easily incorporated into one single complex.
In the embodiments where two TTSEs are present in the same monomer it is preferred that the spacer moiety has a length ) L to to H H
Lπ o Π o Lπ O LΠ
HI TJ cr rr rt H cn 3 ft) HI cr ll- ro Ω cn H ti¬ cr p- Ω rt o Hi ft) TJ rt Ω rt P- _ Hi cn er cr O 3 0 p- 3 p- 0 <! cr P- P- • 0 μ- P- er H-1 cn ft) ft) 3 0 <! 0 er 0 p- 3 to 0 TJ 0 ro rt 3 3 ' ft) Φ 0 Pi LQ 3 (t 3 ro cn 0 i LQ Φ 3 0 PJ Φ 3 0 + p, ft) ti¬
Φ LQ rt 3 ro P- rt φ • Ω 3 ro P- et 3 φ 3 P- <! 3 Ω to 3 Ω er
TJ τ3 P- X Φ i Ω h-1 TJ P- 3 On 3 cn cn Ω 0 rt P. Pi τ Hi Φ 0 + ft) ro
Hi Φ 3 0 ø) Hi rr 3 ø) 0 3 ft) cr Hi P- J ro P- Φ 0 3 P- Φ 0 3 0 3 P> rt Hi 0
0 TJ Ω 3 Hi 3 ft) h-1 cr P- 3 ><- Hi & er TJ On 3 en τ 3 3 TJ H{ P- Hi TJ — - P- Hi
TJ ti¬ O Hi cn 3 ro 3 P ro ro 0 ft) P- LQ 3 rt 3 φ H-1 0 3
Φ p- P NJ P- φ cn Φ rr P- 3 3 cn 0 P Hi 3 P- Ω cn On p- ft) 3 cn ro -— -. 3 o rt
Hi pi TJ 3 0 o ft) ø) 3 rt rt TJ ^ - 0 LQ cn ft) Φ On rt rt 3 X 53 P- er rt φ 0 53 P- Hi 3 P- Hi O < er h-i P- cr 3 P ft) O cn φ P- er 0 ro ro
P- Hi P- (t cn cn 0 Hi P- cn ro ^ Hi ø) ro cr ti¬ ti¬ Hi P- H ^ rt Hi ro Hi et φ 53 ft) H ^ Ω M P Pi P- Hi P- rt 3 3 P- ro er cn Hi Hi H ft) 0 P. ^ rt cn P- rt cr <; ti¬ cr P- LQ Ω 53 Ω ft) rt rt 3 ro Ω et Φ P CO Φ cr HS ro ti¬ 53
P- Ω Φ er Ω ø) 3 3 O P- ft) cn 0 ro cr On ft) Cd Hi 3 P- ns O r
0 -~ 0 cr 0 3 ft) 0) 0 <J \ ø) 3 et rt ro 0 ^ cn Hi Ω 3 Φ LQ l-1 to ft) 3 P- H
Hi 3 ft) 3 μ- en rt 3 P- cn 3 er P- Hi Φ P- ft) ft) Hi 3 1 ro rr 3 3 H cn < ticn ι_ι. 3 rt ro 0 ft) rt rt ft) cn Hi H φ Φ O Ω cn P- 0 Φ HI rt φ 0 φ ns et ti¬ ft) 3 LQ Hj p- Ω p- 3 3 H 3 3 ro P- H ft) 3 TJ tiTJ 0 3 H{ tiCO φ Hi Hi μ- Hi er cn LQ Φ 3 rt P P. H Pi 0 CO Ω rt ft) ro ft) C P cn er Cd rr < ft) σ ^ φ ø) er TJ LQ P- ro 0 O P- cn ft) 0 - Cd rr Ω On Ω ^ P- cn
Hi φ ft) 3 Hi 3 rt 53 li¬ \ O 3 Hi ft) Cd Hl li¬ 3 Hi cn p- ^~* Φ ro 0 cn ft) cn rt Hi φ ft) P- 0 ft) <! 3 Hi 3 Hi ft) rr 53 • 0 0 Hi er Hi Ω 0 Hi 53
3 rt 3 μ- φ 3 3 < P- P- ft) rt Φ P- P- P- cr 3 Hi ^ ft) 3 53 cr φ O - Hi 3 Λ ft) ^ LQ 0 P- cn 0 Hh 0 0 P. 3 Cr 3 ro cn rt H 3 3 Φ rr ft) P-
Ω Hi LQ 3 Hi Hi Pi 3 Hi P- LQ Φ p- 0 3 Hi φ H TJ 0 er ; Ω i rt p- O P- P- φ P. 0 P- ø) Ω P- P- 3 3 3 Pi 3 ro er 3 CO Hi P- er H ro cr
P- 3 H| Ω ft) Hi P- H 3 3 H ft) 0) <! LQ ro rt LQ ^ 3 Φ Cd ro ro ro H
3 Ω P- LQ Φ ø) Hi P- 0 P- rt ro 0 P. - 0 cn rt ft) to TJ rt CO Hi TJ ø)
Hi cn Φ Φ & Hi Hi LQ Hi ft) cn cn P- 3 3 P- TJ 53 3 53 "" ft) P- Pi td 0 Hi HS
3 Φ 0 3 3 Hi CD 0 φ Hi ft) ro 0 3 ø) ft) 3 P- 0 Ω Φ Hi Hi ro P- Hi 0 ro
3 ft) 3 li¬ et rt μ- P 3 Hi rt Ω 3 3 Ω rt TJ Hi tiLQ er Φ Φ 53 P- cn cr 3 0 3 cr c rt cn φ ^ 0 3 ro 3 cn P- P- 0 7 M ro TJ TJ er P- 3 H 3 P- Hi ft) ' Ω ft) φ ft) μ- 3 Ω φ 3 0 3 0 3 ro M 0 Ω 3 ft) φ LQ ft) 3 rt ro 0
3 cn Hi rt Φ rt rt --< P- 3 α Hi > 0 Ω P- cn ro ft) 0 ti¬ rt Hi Hi P- Φ cn 3 < rt ft) Φ Hi cr X * - Φ Φ rr ii- o Ω Φ 3 On er P- Φ Hi ro cn ft) cn 0) cn Hi LQ P- Φ TJ cn 0 Ω ^ 3 ft) ft) P- p- 3 ft) cn N P- Φ <J 3 er Ω
3 3 cn ro ti¬ er 0 TJ 3 3 pi _l. et P Hh Φ rt cn -T o er to f
TJ ^ ro 3 P- P- 3 ro P- en cr r t) CD
P- P- φ P- TJ 0 φ Λ p- P- TJ P- 3 a + Hi 3
3 3 3 er Φ P- rr 3 Pi < ft) Φ Hi ft) LQ 0 3 ro ti¬ Ω TJ *<: φ 0 o 3 H P- rr
P- et <- J rt cn ro φ φ P- Ω 0 0 53 ft) 3 cn ro ft) ft) 3 53 o + cn ->
53 et rt 3 Hj 3 TJ ti¬ ti¬ cr rt ri¬ Ω rt Ω P- cn μ- HI ø) Ω TJ ft) Hi er p- P- P- Φ pcn rt P- TJ 3 D 3 H P- ^ cr ^ 0 Hi Φ 3 TJ ro 0 — 3
P- Hi 0 On HI < ro Hi Hi Hi Φ P- ro en Ω 0 X en 3 P- 0 Hi Φ ft) 0 P- cn 3 - LQ H
Ω ft) Hi φ CO ø) cn 0 Hi 0 0) P cn cr 3 ft) cn Ω o 3 ^ Ω 3 P- Φ P- cr 3 rt Cd P- cr P- Hi 3 ti¬ 3 3 3 cr 3 ft) rt Φ Q P Hi 3
Pi cr 3 Ω 3 Φ 3 cn ro 3 Φ 53 0 TJ Φ 3 3 Hi τ ti¬ 3 to P. X r
3 Φ o 0 ft) ø) ft) cn P- Ω P- 0 Hi h-1 0) 53 ft) P- 0 ro er TJ + 0 CD ø) cn cn H; cn cr ^ er O 3 0 S cn 3 φ 0 cn cr ^ 3 3 TJ ro ft) ft) NJ 3 On
3 rt Φ r HS h-1 ø) •<: 3 LQ > ft) μ* Φ Hi ro ti¬ Φ 0 rt 3 P +
"< ft) X φ ft) Φ cr 3 ι_j. P- 3 Pi . 53 TJ P cr er — P- P- ft) On r to 3 er cr o TJ cn . ro & cn 3 Φ LQ 3 TJ LQ 0 0 φ ro ro Φ - φ Pi Hi P- 3 ^
0 P- 3 3 TJ Ω *< LQ • 0 0 M ft) • 3 3 Hi rt ro rt TJ Ω - On
Hi H Hi 0 0 p. P. cn ft) LQ 3 PJ ro H-" M 0 ft) ft) cn en cn H! P- ro rt
P- H TJ 3 3 Φ Φ tirt 3 ro M ft) Pi 53 X P 3 0 ft) ro TJ 0) cn cr cr rt 0 Pi l_l. rt t ro P- Ω Ω 0 pj φ P- Ω <J Hi P- cr 3 TJ ft) 3 P- ro
*<: ; cn μ- 3 Φ φ 3 0 rr Pi 3 53 ?r cr cn P cr 0 ft) cn ft) On ft) er Pi p.
On φ 3 LQ Ω Ω cn 3 cr ro si) ro rt ft) Φ 3 cn <J Hi φ ro cn LQ ft) rt rt ro O to P- Φ cn 3 ft) P- ' ft) ft) cn On
0 Φ 0 3 Hi φ P- er 3 P L
Hi 3 0 LQ ro
philic (e.g. lys and glu) residues that are largely exterior in the coiled coil structure have been replaced with alanine appear similar to the native protein, suggesting that is indeed possible without interfering very much with stability of the trimeric structure to replace all glu, asp and lys residues by a combination of gin, asn, arg or ala, and thereby generate a sequence that, as an N-terminally blocked synthetic peptide, would be very easy to convert into a chemically stable active-ester component, e.g. an N-hydroxy succinimide ester of an acetylated peptide, that could react with (and thereby couple to) any exposed lysine side chain in a target molecule of interest. Such peptide synthesis, activation and coupling chemistry will be readily designed and applied by a person skilled in the art of peptide chemistry, as will indeed any other conjugation chemistry, like the attachment and use of photo-activatable moieties like e.g. phenyl azides .
In conclusion, it seems that the most important structure in native TTSE is the consensus sequence shown in Fig. 2, and that large variations in the polypeptide chain may be allowed. Hence, one advantageous embodiment of the monomer polypeptide construct of the invention is one where at least one amino acid residue selected from the group consisting of amino acid residue nos . 6, 21, 22, 24, 25, 27, 28, 31, 32, 35, 39, 41, 42, is/are substituted by any non-helix breaking amino acid residue, the amino acid residue numbering referring to amino acid residues in SEQ ID NO: 7. All these residues have been shown not to be directly involved in the intermolecular interactions which stabilises the trimeric complex between three TTSEs of native tetranectin monomers and it is therefore expected that these amino acids may be safely substituted with any amino acid which will not have an adverse effect on helix formation (notably proline, which introduces a rigid bend in a polypeptide chain) .
Another advantageous embodiment of the monomer polypeptide construct of the invention is one which is free from any free amino and/or carboxy groups. This would favour synthesis of a TTSE by means of solid or liquid phase peptide synthesis, since there would be no need of introducing any protective groups during peptide synthesis.
Since the consensus sequence of Fig. 2 is believed important and since this consensus sequence embraces the above-discussed heptad repeat, it is according to the invention preferred that the TTSE comprises a repeated heptad having the formula a-b-c-d-e-f-g (N to C) , wherein residues a and d generally are hydrophobic amino acids. However, since "a" and "d" in the third of the complete heptads of all known members of the tetranectin family are constituted of glutamine, it is most preferred that the TTSE comprises the heptad repeated 3 times and that the last occurrence of the heptad has a glutamine residue corresponding to residues a and d.
Since exon 2 of native members of the tetranectin family seems to contain the necessary elements to effect stable trimerisation, it is preferred that the monomer polypeptide construct is free of substantial parts of tetranectin which is encoded by exon 3 and/or lacks substantial parts of tetranectin which is encoded by exon 1. However, since exon 1 encoded material seems to stabilise the trimeric native tetranectin, it is especially preferred that all or part of exon 1 is part of the monomer polypeptide construct, and it also seems to be rational to include the first three amino acids encoded by exon 3 , since these are known to take part of the formation of the native triple alpha helical coiled coil in human tetranectin.
One particularly interesting embodiment of the invention is the possibility of designing oriented molecular assemblies, where one or more functional entities are located N-termin- ally to the trimerising element and one or more functional entities are located C-terminally to the element. Such types of design may be particularly advantageous where a certain relative ratio is desired among the different functional ) ) to to H H
LΠ o LΠ o LΠ o LΠ
P- Φ er rt cr ti¬ H 3
3 Φ 3 er er 0
3 Hi Φ ro 3 rt CD 53 TJ Hi 0 cr Ω cr Φ Φ rt ro 3
Figure imgf000025_0001
φ rt P- HS Hi φ X CD ro Ω ft) rt rt P. J Pi Cr rt ft) H{ Hi
Hi 3 3 ft) ft) TJ φ cr ro HS P 3 0 0 cn * X Φ Φ Hi φ Ω et Ω Pi
3 P- cr 3 Φ rt P- τ
Ω 3 ft) O 3 P- 3 ro
Φ Ω 3 ti¬ TJ 3 ft) TJ
3 LQ Φ Hi rt
O cr φ ro Hi ti¬ P- P-
Figure imgf000025_0002
Hi ft) X 0) ns H-" P. rt 0 Ω rt P- <- CD
On P- φ 3 3
Φ 0 φ Hi φ cr Ω
3 3 3 Pi Φ p, P- 0 ft) 0 P- P- LQ 3 rt ft) 3 3 Ω cn cr cn c
3 et 0 LQ 0 ft) rt
HS 3 3 et cn Hi ft) 3 Φ *> P- et 3
3 0 Hi o P- 0 ft) Ω ti- On o rt 3 cr rt cn ro cn Ω P- P- en
Hi 3 0 3 •
TJ ft) er 3 0 P-
HS ti3 P- On rt
0 ro 3 3 3
< P- P- H-1
P- ^ rt Ω • Φ 0
On cn O φ
Φ ro 3 • 3 er cr 3 ft) ro Φ P- 0) Pi 3
0 <! rt 3 er CD *<- ft) 53 ft) cn HI ti¬ Φ rt φ rt ft) ro Φ P- 3 TJ Hi
Pi 3 0 Ω er P-
3 3 φ ^ 3
3 rt et cn CD • p- ro p, 53 0 P- Hi
-Q 3 P- P- 0
3 TJ 3 rt P1 Ω
Φ ro Φ er Pi 0 0
Hi p, φ LQ 3
0 ft) cn ti¬ 3 P- li¬
TJ et er ft) Ω ft)
TJ 3 Ω Φ rt ft) P-
0 Hi ft) 3 3
H; ro 3 ro Hi P- er ft ft) 3
3 0 cr cn 3 LQ
H| Φ Φ rt
Figure imgf000025_0003
nity to deploy the trimerisation module as a vehicle to allow the construction of "pick-and-mix" conjugates prepared from previously fabricated collections of homotrimeric molecules. To illustrate the versatility of this design opportunity by way of theoretical example, let us assume that (1) a collection of twenty different antibody constructs (e.g. in the format of single-chain Fv) each of its own characteristic binding specificity, has been selected and then turned into homo-trimeric molecules by fusion to a tetranectin trimerisa- tion module, and let us also assume that a set of twenty different effector molecules (e.g. toxin domains) have similarly been prepared and also conjugated to the tetranectin trimerisation module. A user provided with prefabricated collections of twenty different antibody constructs and twenty different toxin constructs - 40 different reagents in all - has the opportunity then to prepare 400 different toxin-antibody conjugates, simply by mixing a first preferred component from one reagent collection with a second preferred reagent from the other collection and then subject this binary mixture to conditions, i.e. gentle heating or incubation with a suitable level of denaturant, to accomplish subunit exchange among all trimeric molecular species in the mixture. After the subunit exchange step the desired hetero- bifunctional reagent will be present in the mixture as a major component of the mixture and may then be deployed as such to accomplish a given purpose or, alternatively apply a simple purification step to isolate his favoured hetero- functional binary reagent from any remaining mono-functional trimer species by a simple standard protein purification step, easily designed using standard techniques known in the field of protein purification.
A further enhancement of the versatility of the "pick-and- mix" technology may be achieved by including a specific affinity purification tag on each array of trimerisation module - probe/effector/indicator conjugate, fused directly in-line or, alternatively, fused via a cleavable linker (a polypeptide segment containing e.g. a factor Xa or an to to H H
LΠ tπ o Lπ o Lπ rt Ω H rt cn cn
0 O er Hi ft) TJ
3 3 P- rt CD
P en cn 3 P- Ω
P- ti¬ - Φ 0 P- cn ns Hi 3 ft)
3 ø) ft) Ω 3 3 P"
< rt 0 O ^
0 P- Hi Pi
3 0 3 3 3 ro p TJ ft) M 3
O rt ro LQ ti¬ Hi P- P-
0 er li¬ 0 3 ro ft) 3 53 ro
3 3 cr ro ft) P- rt ft) P- p, L rt 3 3 Ω Φ
P- < ro P cr P
0 ro 3
3 3 cr er cr Pi rt 0 Φ ft) Φ
0 p- Pi 3 < p,
0 P- Ω CD P-
3 3 φ <;
Ω ro cr ft
0 p- 3 0 ro rt
3 cn rt 3 ro P-
TJ 3 <!
Ω 0 ^ ro ro 0 Hi cn L
X 3 ft) ro ro cn rt ro o cn rr er h-1 3 Hi c nj ro 0 LQ er 3 53 P- ti¬ ro Ω 3 3 er rt ti¬ o er CD ro -
53 ro 3 ro ro ro P- O rt p, ti¬ ro 3 ro ro ro
3 ns ro P P rt ro Hi 0
P- ro rt si)
On 3 TJ rt 0 3 ro LQ o Hi ro
3 p- n-j P- P Ω rt 3 3 P- rt
P- ro τ3 ro cn P-
Ω ro ro n; ft) 3 ft) Hi TJ P- h-1 ro rt cn rt
P p- ft) JO Hi
H Pi er 53 P-
H cn Φ P- 3
CO 0 0 cr Φ td 3 o P, en ft) • 3 P- L
*"*• cn 0 •
Figure imgf000027_0001
) t to H H
LΠ o π o LΠ O LΠ
Ω 3 3 CD ?r ti¬ 0 Hi TJ er 3 TJ en 3 3 Ω er 3 > P- TJ er cn Ω ft) 3 0 H cr P- rt cn Ω
0 ro 0 0 X 3 er Φ 0 P- ro ft) TJ to 0 P- o 3 P. Φ -^ 0 3 ft) cr o Pi n rt ft)
3 Ω On TJ 0 ro 0) 0 3 rt ft) 3 3 rt ^ Ω o p-1 g 3 P rt Φ 3 Φ p- ns 3 rt 3 3 Φ ro 53 TJ P 3 rt P- rt ti- 0 Φ 3 3 Φ O P- 3 TJ ro ft) o 3 3 3 c ft) h-1 I-1 Ω Ω 3 On Hi P- τ cn cr P- 3 Hi 3 rt 3 P- Ω Φ ro h-1 3 ti¬ rt Φ Ω ft)
P- ro Φ 3 et ro 0 ro 3 ft) Hh ro 3 Ω φ TJ ft ti¬ 3 cn ^ P- φ ns p- ns rt P
3 h-1 ro cr TJ ti¬ * TJ 0 LQ ro h-1 0 Hi P- rt On 0) Φ ns cn P- 3 cn Φ Ω cn cn <!
P- 53 Ω Φ P 0 H ro rt P. P- Hi 3 P- ft) P- rt ^ ft) 3 P- 0 P- 3 ft) ø) c
3 0 O ti¬ o P- ft) P- 3 <! 53 P P- 3 0 cn P- 0 cn rt 3 3 LQ φ p- 53 3
LQ 3 3 P- ro er -^ 3 Ω P ro P- P- cn 3 cn 3 cr 3 rt er 0 <! ft) 3 ns 3 er li¬
TJ 3 3 3 Ω Φ φ 3 rt cn 3 ø) ft) Φ ns Φ ns li¬ 0 Ω ^\ p- Ht Ω p- ft)
0 0 ti¬ p- φ ro 0 • cr li¬ Ω ti¬ 0 Hi Φ *< 3 rt ^ ft) P- Hi cn H Ω LQ
3 3 53 ns 3 3 3 3 ft) er ft) er er p- < Φ Ω 53 3 ro < P Φ ft) CO 3 cr Φ c cn Φ cr o rt LQ TJ M H ^ 3 cn φ 3 53 0) rt ro ft) ro ro Φ rt d On o
><- er 3 P- TJ 3 P- h-1 h-1 er er Ω ft) 0 ft) er rr P- 3 ro 3 0 cn 3 p- cn p- ft) 3
0 ti- Ω P- ø) 0 3 P- 0 φ ti¬ ro ro 3 rt 3 rt P- rt h-1 Hi 3 p- 3 3 LQ O 3 P. cn c ft) 53 cn cr Ω rt ro cn 53 er cn Hi Φ P- Ω 53 cr 0 Φ 3 cn p- cr P- 3 LQ φ h-"
3 - ro cr φ Ω Φ cn P- P- 0 ft) 53 P- 0 h-1 3 cn 3 O cn LQ ft) rt Ω Hi Hi Φ On 0 TJ er 3 TJ 3 3 Φ ^ cn cn cn 3 rt Φ 53 3 rt P
P- ns HS 53 0 Φ 3 P- 3 0 ft) ro rt 0 0 0 P ft) ^ ti¬ P- Φ O Φ 53 φ cr
3 CD φ 0 3 cn 3 ft) cn ns Ω rt ro ro 3 53 rt rt 3 ti¬ P- Ω er rt 3 0 en Φ
LQ ft) ti¬ ft) 3 LQ cr Ω (ϊ Ω P- 53 P, 0 0 0 0 Φ er rt <! P- P- ro 3 P- 1- 53 p- rt Ω 0 ns 3 ft) - < Ω Hi er 3 φ < er 3 3 φ er P- P. 3 rt 3 P ft) LQ Ω
CD 0 P- P 0 3 P- LQ ro ro ro φ ft) P 0 ft) P. Hh P- LQ ^ 0 3 O
TJ <! er H ft) si) P. Ω rr 3 3 H| Ω Φ Hi rt 3 cn ø) 0 0 cr 3 Φ
Ω Hi ft) rt 3 P- *<- cn 3 On rt φ P- P- P- Ω TJ 0 ft) 3 Hi 3 3 Φ O p. TJ
0 CD er et 3 P- P- Ω 3 P- 3 Ω rt 0 h-1 Φ P ti¬ h-1 cr 3 ft)
TJ Φ φ P- ft) ft) 3 0 rt er rt LQ ø 0 φ 3 0 0) 3 er cn P- ft) ft) <; cr 3 ns Φ cn P-
^ CD 3 0 P 3 < LQ 3 3 ro cn Λ TJ *< Ω ft) ro 3 rt i-h rt rt Pi ns O cn
Hi rt ti¬ 3 Φ Φ Φ Hi Hi TJ ti¬ 3 er rt 0 P- P- cr p- φ
0 CD h-1 er cn X ø) Hi rt 0 ro ro ≥- 0 cn er P- P- ti¬ P- cn 3 rt ro 0 cn Φ cn TJ ft) Pi
H 3 ^ ns rt P- P- 3 ft) 0 3 ti¬ Φ Hi cn er 0 0 rt 0 3 Hi 3 P- Hi cn
Ω Φ O LQ cr TJ LQ 0 ti¬ ns Φ er φ t) O ti¬ ro rt Φ 3 H Φ cn ft) ft) τ3 3 Hi 3 rt φ er ft) 3 f
3 ≥; 3 ro P- 3 ft) ro Ω O er <! rt Hi r
P- P- Φ Φ ro 3 3 er 3 ro Ω ti¬ Hi rt ti¬ O Ω ns 0 rt 3 cn Ω cr O τ3 O
Φ Φ rt 3 - TJ Ω rt 0 P. TJ et rt er ft) Φ er t 3 0 cn 3 Φ 3 o φ rt Ω Φ er P- cr ti¬ 3 Φ Φ et et Φ 3 Ω Ω P- 3 ns TJ On O rt HS rt Φ TJ cn 0 Hi 3 ro rt Ω p- Hi Hi P- Hi cr Hi 0 0 cn 3 TJ P- P- ti¬ p- 3
Φ rt Hi p, p, TJ cn Ω rt cr Φ 3 P- 0 ft) cr Φ ft) 3 ft) 3 er 3 3 p- cn O L rt cn 0 ft) ft) 0 ft) h-1 0 ns Φ rt ro rr ro • p- 3 3 3 0 rt TJ cn ft) ti¬ P- t LQ Pi Hi 3
HS ro LQ 3 Ω et Ω ro 3 P- p, ro ro 3 er ft) Φ 3 φ o rt er er cn O Φ ft) Φ ft) Φ Φ rt Φ φ Ω rt <! rt cn Hi P- H 3 φ Ω o H| Ω 3 HS P- ro er ti¬ < P
3 Φ Ω P- P- H| rt cn φ ro Hi rt 3 cn cr cn Hi rt rt 0 O ro P- 3 φ cr er Ω O
Φ Ω er t 0 3 P- t Hi 3 ft) Hi P- - Φ Ω P- P 3 3 3 Ω P- TJ P-. o φ O 3 TJ e
Ω rt Φ P- 3 cn cn 0 P- P- P- 3 3 3 0 0 0 3 P- rt TJ ti- rt rt 0 3 ns o rt P- ns 3 • φ 3 H ft) 3 ro Ω P- ti¬ er 3 P 3 Hi cn ft) cr Φ Hi cn
P- 3 •- Φ Λ h-1 LQ Ω rt er ø) 3 3 Φ P- ro h-1 P- cn o er Hi τ ^
3 LQ et 3 σ 3 0 φ 53 et 3 3 ft) cn 0) Φ ft) ns HI 3 3 0 H-J 3 0 ns n$ O en ns Φ 3 φ 0 Ω P- Hi 3 rt P- Ω rt P- Φ Φ er Φ P- 3 3 HS Φ r rt ft) 3 p- ns Φ 3 3 0 3 ft) cn Ω cn er P- 3 cn P. 3 ns HS TJ 3 ft) Ω J
H{ 3 Ω 3 LQ Ω ro P- 3 h-1 ti¬ ft) φ p- 0 Φ TJ cn et t ro 0 er ti¬ et 3 rt er ft) et
P- ^ cr φ ^ et φ X 3 P. 3 rt Hi Ω 0 3 Hi Φ - ft) er 3 er p- Hi et p- cn et p-
3 Hi 0 en ø) Φ Hi Hi er h-1 Φ 0 3 P- Ω PS CD o 3 ro O ft) O p- p-
Φ 3 ø) p- p- 3 rt er Ω P- ro CD 0 -Q 3 0 cn P- er P- <! Ω φ LQ 3 Cr O φ ns 0 cn 3 rt ft) TJ er Φ e 3 Λ 53 3 P 0 ft) φ 3 rt rt P- Φ ti¬ 3 Φ ft) 3 p- 3 ft) cr ns Φ P- to 3 Ω ro P- rt cn ri ■• nj 3 ns P- Ω 3 O < Ω en φ o et ft) φ φ Φ 3 H| P- O P n$ P- P- LQ ft) P- 3 et p- h p- O O ft) Ω P- cn ft) LQ P- P 3 Φ er 0 pTJ 3 rt P- cn 3 Hi 3 r
3 0 Hi cn ro cr 3 en h-j ro P- 0 p- LQ h-1 3 0 rt ft) Φ CD 3 cn Φ Hi
tion module component, as this selection would be energetically favoured. Hence, conjugation of one functional protein component to a suitably selected covalently dimerised tetranectin trimerisation module component and conjugation of a different functional protein component to a single-copy element of the trimerisation sequence would provide for the preferential formation of a 1:1 bifunctional complex and suppression of formation of any other complex.
The monomers of the invention may be prepared by methods generally known in the art, using exclusively or in combination the techniques of recombinant protein production, peptide synthesis (liquid phase or solid phase) , and traditional chemical coupling of heterologous moieties to a peptide chain or to specific residues therein. Hence the invention also relates to a method of preparing the monomer polypeptide construct of the invention, the method comprising
isolating the monomer polypeptide construct from a culture comprising a host cell which carries and expresses a nucleic acid fragment which encodes the monomer polypeptide construct,
synthesizing, by means of chemical peptide synthesis, the monomer polypeptide construct and subsequently isolating the monomer polypeptide construct from the reaction mixture ,
- preparing a TTSE in a culture comprising a host cell which carries and expresses a nucleic acid fragment which encodes the TTSE, subsequently linking covalently at least one heterologous moiety to the TTSE, and thereafter isolating the resulting monomer polypeptide construct, or
- synthesizing, by means of chemical peptide synthesis, a TTSE, subsequently linking covalently at least one heterologous moiety to the TTSE, and thereafter the isolating the resulting monomer polypeptide construct from the reaction mixture,
and optionally subjecting the monomer polypeptide construct to further processing.
The nucleic acid fragment which is mentioned above is also a part of the invention and is defined as a nucleic acid fragment in isolated form which encodes a TTSE as defined herein or which encodes the polypeptide part of a monomer polypeptide construct according to the invention, with the proviso that the nucleic acid fragment is different from one that encodes native members of the tetranectin family, and that the nucleic acid fragment is different from one that encodes any of the fusion proteins CIIH6FXTN123 , H6FXTN123, H6FXTN12, H6FXTN23, the sequences of which are shown in SEQ ID NOs: 24-27.
The above mentioned host cell (which is also a part of the invention) can be prepared by traditional genetic engineering techniques which comprises inserting a nucleic acid fragment (normally a DNA fragment) encoding the polypeptide part of a monomer polypeptide construct of the invention into a suitable expression vector, transforming a suitable host cell with the vector, and culturing the host cell under conditions allowing expression of the polypeptide part of the monomer polypeptide construct. The nucleic acid fragment encoding the polypeptide may be placed under the control of a suitable promoter which may be inducible or a constitutive promoter. Depending on the expression system, the polypeptide may be recovered from the extracellular phase, the periplasm or from the cytoplasm of the host cell .
Suitable vector systems and host cells are well-known .in the art as evidenced by the vast amount of literature and materials available to the skilled person. Since the present invention also relates to the use of the nucleic acid fragments of the invention in the construction of vectors and in host cells, the following provides a general discussion relating to such use and the particular considerations in practising this aspect of the invention.
In general, of course, prokaryotes are preferred for the initial cloning of nucleic sequences of the invention and constructing the vectors useful in the invention. For example, in addition to the particular strains mentioned in the more specific disclosure below, one may mention by way of example, strains such as E. coli K12 strain 294 (ATCC No. 31446) , E. coli B, and E. coli X 1776 (ATCC No. 31537) . These examples are, of course, intended to be illustrative rather than limiting.
Prokaryotes are also preferred for expression, since efficient purification and protein refolding strategies are available. The aforementioned strains, as well as E. coli 3110 (F-, lambda-, prototrophic, ATCC No. 273325), bacilli such as Bacillus subtilis, or other enterobacteriaceae such as Salmonella typhimurium or Serratia marcesans, and various Pseudomonas species may be used.
In general, plasmid vectors containing replicon and control sequences which are derived from species compatible with the host cell are used in connection with these hosts . The vector ordinarily carries a replication site, as well as marking sequences which are capable of providing phenotypic selection in transformed cells. For example, E. coli is typically transformed using pBR322, a plasmid derived from an E. coli species (see, e.g., Bolivar et al . , 1977). The pBR322 plasmid contains genes for ampicillin and tetracycline resistance and thus provides easy means for identifying transformed cells. The pBR plasmid, or other microbial plasmid or phage must also contain, or be modified to contain, promoters which can be used by the microorganism for expression.
Those promoters most commonly used in recombinant DNA construction include the B-lactamase (penicillinase) and lactose promoter systems (Chang et al . , 1978; Itakura et al . , 1977; Goeddel et al . , 1979) and a tryptophan (trp) promoter system (Goeddel et al . , 1979; EPO Appl . Publ . No. 0036776). While these are the most commonly used, other microbial promoters have been discovered and utilized, and details concerning their nucleotide sequences have been published, enabling a skilled worker to ligate them functionally with plasmid vectors (Siebwenlist et al . , 1980). Certain genes from prokaryotes may be expressed efficiently in E. coli from their own promoter sequences, precluding the need for addition of another promoter by artificial means.
In addition to prokaryotes, eukaryotic microbes, such as yeast cultures may also be used. Saccharo yces cerevisiase, or common baker's yeast is the most commonly used among eukaryotic microorganisms, although a number of other strains are commonly available. For expression in Saccharomyces, the plasmid YRp7, for example, is commonly used (Stinchcomb et al., 1979; Kingsman et al . , 1979; Tschemper et al . , 1980). This plasmid already contains the trpl gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan for example ATCC No. 44076 or PEP4-1 (Jones, 1977) . The presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.
Suitable promoting sequences in yeast vectors include the promoters for 3-phosphoglycerate kinase (Hitzman et al . , 1980) or other glycolytic enzymes (Hess et al . , 1968; Holland et al . , 1978), such as enolase, glyceraldehyde-3 -phosphate dehydrogenase, hexokinase, pyruvate decarboxylase, phospho- fructokinase, glucose-6 -phosphate isomerase, 3-phosphoglycerate utase, pyruvate kinase, triosephosphate isomerase, phosphoglucose isomerase, and glucokinase . In constructing suitable expression plasmids, the termination sequences associated with these genes are also ligated into the expres- sion vector 3' of the sequence desired to be expressed to provide polyadenylation of the mRNA and termination.
Other promoters, which have the additional advantage of transcription controlled by growth conditions are the promo- ter region for alcohol dehydrogenase 2, isocytochrome C, acid phosphatase, degradative enzymes associated with nitrogen metabolism, and the aforementioned glyceraldehyde-3 -phosphate dehydrogenase, and enzymes responsible for maltose and galactose utilization. Any plasmid vector containing a yeast- compatible promoter, origin of replication and termination sequences is suitable.
In addition to microorganisms, cultures of cells derived from multicellular organisms may also be used as hosts. In principle, any such cell culture is workable, whether from verte- brate or invertebrate culture. However, interest has been greatest in vertebrate cells, and propagation of vertebrate in culture (tissue culture) has become a routine procedure in recent years (Tissue Culture, 1973) . Examples of such useful host cell lines are VERO and HeLa cells, Chinese hamster ovary (CHO) cell lines, and W138, BHK, COS-7 293 and MDCK cell lines.
Expression vectors for such cells ordinarily include (if necessary) an origin of replication, a promoter located in front of the gene to be expressed, along with any necessary ribosome binding sites, RMA splice sites, polyadenylation site, and transcriptional terminator sequences.
For use in mammalian cells, the control functions on the expression vectors are often provided by viral material . For example, commonly used promoters are derived from polyoma, Adenovirus 2, and most frequently Simian Virus 40 (SV4.0) . The early and late promoters of SV40 virus are particularly useful because both are obtained easily from the virus as a fragment which also contains the SV40 viral origin of replication (Fiers et al . , 1978) . Smaller or larger SV40 fragments may also be used, provided there is included the approximately 250 bp sequence extending from the Hindlll site toward the Bgll site located in the viral origin of replication. Further, it is also possible, and often desirable, to utilize promoter or control sequences normally associated with the desired gene sequence, provided such control sequences are compatible with the host cell systems.
An origin of replication may be provided either by construction of the vector to include an exogenous origin, such as may be derived from SV40 or other viral (e.g., Polyoma, Adeno, VSV, BPV) or may be provided by the host cell chromosomal replication mechanism. If the vector is integrated into the host cell chromosome, the latter is often sufficient .
Upon production of the polypeptide monomer constructs it may be necessary to process the polypeptides further, e.g. by introducing non-proteinaceous functions in the polypeptide, by subjecting the material to suitable refolding conditions (e.g. by using the generally applicable strategies suggested in WO 94/18227) , or by cleaving off undesired peptide moieties of the monomer (e.g. expression enhancing peptide fragments which are undesired in the end product) .
In the light of the above discussion, the methods for recom- binantly producing the monomer polypeptide construct of the invention are also a part of the invention, as are the vectors carrying and/or being capable of replicating the nucleic acids according to the invention in a host cell or a cell-line. According to the invention the expression vector can be e.g. a plasmid, a cosmid, a minichromosome, or a phage. Especially interesting are vectors which are integrated in the host cell/cell line genome after introduction in the host .
Another part of the invention are transformed cells (useful in the above-described methods) carrying and capable of replicating the nucleic acid fragments of the invention; the host cell can be a microorganism such as a bacterium, a yeast, or a protozoan, or a cell derived from a multicellular organism such as a fungus, an insect cell, a plant cell, or a mammalian cell. Especially interesting are cells from the bacterial species Escherichia , Bacillus and Salmonella , and a preferred bacterium is E. coli .
Yet another part of the invention relates to a stable cell line producing the polypeptide part of a monomer polypeptide construct according to the invention, and preferably the cell line carries and expresses a nucleic acid of the invention.
On the basis of the above discussions it will be clear to the skilled person that also the oligomers resulting from the complex formation between the monomer constructs of the invention are important parts of the invention. Hence the invention also pertains to an oligomer which is comprised of two monomer polypeptide constructs according to the invention which comprises at least three TTSEs, or which is comprised of three monomer polypeptide constructs according to the invention which each only contain one single TTSE.
As is explained herein and shown in the examples, the oligomers of the invention are stable at temperatures up to 70 °C and it is therefore especially preferred that the oligomers of the invention are stable at temperatures above physiologi- cal ones, e.g. that the oligomers are stable in the temperature range 50-70°C.
Also a part of the invention is a method for preparing a dimeric oligomer of the invention which comprises
admixing a monomer polypeptide construct which includes two TTSEs (construct 1) with a monomer polypeptide construct which includes only one TTSE (construct 2), effecting the two TTSE's of construct 1 to complex with the TTSE of construct 2 (this can be done by thermal treatment, i . e . heating to a temperature which ensures denaturation followed by subsequent cooling allowing renaturation, or this can be done by dena- turing/renaturing effected by changes in the chemical environment) , and
isolating the resulting dimer and optionally subjecting the dimer to further processing (cf . the above discussion of further processing, but it should also be mentioned that the further processing could include non-covalent coupling of interesting and relevant moieties to the dimeric oligomer) .
Consequently, the method for producing a trimeric oligomer is also a part of the invention and comprises the steps of
admixing three monomer polypeptide constructs of the invention with each other,
effecting complex formation between one TTSE of each monomer polypeptide construct, and
- isolating the resulting trimer and optionally subjecting the trimeric oligomer to further processing.
The considerations applying to complex formation and further processing mentioned above apply to this method also.
In view of the detailed discussion above of the "pick-and- mix" aspect of the invention, the invention also pertains to a kit comprising
a first package comprising at least one container means, each at least one container means containing a monomer polypeptide construct of the invention, a second package comprising at least one container means, each at least one container means in the second package containing a monomer polypeptide construct of the invention, the second package being different from the first package with respect to choice and/or number of monomer polypeptide constructs included therein, and optionally
a third package comprising at least one container means, each at least one container means in the third package, containing a monomer polypeptide construct of the inven- tion, the second package being different from the first and second packages with respect to choice and/or number of monomer polypeptide constructs included therein.
It is preferred that the at least one container means in each package contains mutually distinct monomer polypeptide con- structs, and it is especially preferred that all container means comprised in the kit comprises mutually distinct polypeptide constructs.
A very important aspect of the invention is the possibility of generating a system designed especially for the individual circumstances. The basic idea is that the artificial selection of heterologous moieties and optionally active components, and functional entities result in a unique system as will be further disclosed in the following.
Using the TTSE as a vehicle for assembling monovalent scFv or Fab antibody fragments into oligomeric and multivalent entities offer design advantages also in terms of generating chimaeric artificial antibodies having desirable pharmacokinetic and pharmacodynamic properties. Small derivatives like monomeric scFv fragments or bivalent
"minibodies" are rapidly cleared from the circulatory system, whereas complete Igs stay for very much longer. Conversely, small derivatives like scFv and minbodies exhibit better extravasation properties. It is therefore expected that antibodies of a desired specificity may be optimized for particular diagnostic or therapeutic needs by engineering the pharmacological properties, using the TTSE as a vehicle for controlled oligomerization of e.g. scFv fragments.
One example of such engineering would be the requirements for delivering a high dose of an imaging or toxin-conjugated antibody to a tumour, while ensuring as low a systemic exposure or imaging background as possible . In such case a TTSE conjugated scFv fragment could be designed to exhibit strong multivalent binding to the tumour and rapid clearance of excess conjugate from circulation.
Accordingly, in af further aspect the present invention also relates to the use of a monomer polypeptide construct or to a an oligomer according to the present invention as a vehicle for assembling antibody fragments into oligomeric or multivalent entities for generating chimeric artificial antibodies having preselected pharmacokinetic and/or pharmadynamic properties .
The use of specific delivery systems also play an important role in connection with the present invention in that such systems may by utilized with respect to different use of the present invention both with respect to the a more general therapeutic application and with respect to gene therapy. Exampels of suitable drug delivery and targeting systems are disclosed in Nature 392 supp.(30 april 1998).
Accordingly, efficiency of deliverance may be further increased if the delivery system e.g a liposome is supplied with a molecular unit, an "infector or transfector" ligand, recognized by a internalizing receptor unit specific for the target cells. For example, cells displaying endocytotic receptors like members of the LDL family of receptors may be even more efficiently infected or transfected either by including a TTSE unit in the antibody containing heteorimer or in an independent TTSE unit conjugated to one or more of the domains of the Receptor Associated Protein, RAP, (Ellgaard, L., Holtet, T.L., Nielsen, P.R., Etzerodt, M . , Gliemann, J. & Thøgersen, H.C. Eur J Biochem. 1997, vol 244, 544-551) which is recognized as a ligand to all receptors in this abundant family of endocytosis-mediating receptors.
Accordingly, in a further aspect, the invention is directod to the use of a monomer polypeptide construct or to an oligomer according to the invention for targeted gene therapy involving selective delivery of the material for transfection or infection of the specific population of cells.
The ultimate perspective of such TTSE-mediated gene therapy would be the deployment of a viral vector that would find no other targets in the patient but the cells displaying the artificial receptor complex.
In a still further aspect, the invention is directod to the use of a monomer polypeptide construct or to a an oligomer construct according to the invention wherein the at least one heterologous moity comprises a moiety selected from a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, and wherein the gene therapy involves the delivery of nucleic acids to the desired population of cells by use of a viral vector directed to cells displaying the artificial receptor complex corresponding to the heterologous moity.
In another aspect, the invention is directod to the use of a monomer polypeptide construct or to a an oligomer construct according to the invention wherein at least one TTSE is modifyed with a membrane integrating or associating entity having affinity to the specific population of cells in the body relevant for the gene therapy.
Furthermore, a recent review of the imaging an therapeutic potential of a range of known antibody derivatives has been published by Paul Carter and Margaret Merchant of Genentech Inc. (Current Opinion in Biotechnology, 1997, vol 8, 449-
Figure imgf000040_0001
the non-antibody part of the complex, leaving the antigen- binding module entirely unmodified, and the complex may furthermore be formulated "in the field" as and when needed.
In many receptor-mediated signal transduction pathways signals are triggered by the clustering of receptor molecules on the cell membrane. The TTSEs therefore have important applications in the study and exploitation of receptor signalling, as ligands may be presented as oligomers by conjugation to a TTSE unit.
This also has important application in phage display technologies for discovering new ligands and new receptors as the engineering of a TTSE unit fused inline to a candidate ligand molecule will allow the display of a hetero-trimeric phage coat protein, in which only one of the monomer units is conjugated to the phage coat protein. This may be accomplished by appropriate insertion of amber codons at the site of fusion of phage coat protein to the TTSE-ligand segment of the three-way fusion protein encoded by the recombinant phage. In appropriate E. coli cells the presence of this amber codon will result in translation termination in the majority of read-throughs, and hence most of the fusion protein product secreted to the periplasmic compartment in the phage-infected bacterium will be soluble TTSE-ligand fusion protein, whereas a minority of the fusion protein will also contain a phage protein module. The majority of trimers that will be generated will therefore contain, at most, one monomeric unit that will ensure integration (display) in the mature recombinant phage particle .
A further advantage of the display tecnology discribed above relates to the fact that it is specially useful for selection on the basis of a relatively low affinity because of the entropic benefit contribution obtained by the proximity of the tree binding moities in confined spatial arrangement. Accordingly, the present invention in an important aspect, also relates to protein library technology wherein the TTSE's discribed above are utilized.
The trimerisation of candidated recombinant ligands is especially important as, for many receptors, the intracellular signal is induced by receptor clustering, which is only brought about if the external ligand exhibits multivalent binding to the receptor, so as to bridge two or more receptor molecules.
In one preferred embodiment the monomer polypeptide construe or the oligomer construct according to the invention is for targeted gene therapy involving selective delivery of the material for transfection or infection of the specific population of cells. Tthe at least one heterologous moity may comprise a moiety selected from a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, and wherein the gene therapy involves the delivery of nucleic acids to the desired population of cells by use of a viral vector directed to cells displaying the artificial receptor complex corresponding to the heterologous moity.
As mentioned above, it is an important aspect of the invention that the monomer polypeptide construct and/or the oligomer may be used as a component of a chimaeric product having low antigenicity in humans. As the construe is of human origin it is believed that the antigenicity in humans is low relative to formulations comprising on or more components of non-human origin.
One primary use of a monomer polypeptide construct or a an oligomer according to the invention is for delivering an imaging or toxin-conjugated antibody to a target such as a tumor, or use as a vehicle delivering an substance to a target cell or tissue, as a vehicle for assembling antibody fragments into oligomeric or multivalent entities for generating chimeric artificial antibodies having preselected pharmacokinetic and/or pharmadynamic properties.
The substance in question being one or more selected from the group of heterologous moities as well a pharmaceutical . Also a labelled construct wherein the label is coupled to one or to of the TTSE monomer units is within the scope of the invention.
As explained in detail previously, an important and surprising use of the monomer polypeptide construct or the oligomer according to the pesenent invention is for protein library technology, such as phage display technology. The present invention also relates to any polynucleotid molecule such as a RNA, DNA or PNA as well as any vector encoding one or more TTSE.
A further use according to invention includes preparation and use of a pharmaceutical composition comprising the TTSE construct and optionally a pharmaceutically acceptable excipient. The composition may be administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal, vaginal or conjunctival tissue, the intranasal route, the pulmonary route, the transdermal route, the intramuscular routed, subcutaneous route, intratechal route, inoculation into tissue such as a tumour, or by an implant.
The the monomer polypeptide construct or the oligomer is in a preferred embodiment comprised in a liposome.
It is obvious from the disclosure of the present invention that the treating or preventing of a disease may by a further aspect comprising administering to the subject in need thereof an effective amount of a pharmaceutical composition referred to above. In one aspect of the various possibilities according to the present invention concerning how the human gene therapy is targeted, includes the case wherein at least one TTSE is modified with a membrane integrating or associating entity having affinity to the specific population of cells in the body relevant for the gene therapy.
As used in the conventional pharmaceutic field the present invention includes a method wherein the monomer polypeptide construct or the oligomer is administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal og vaginal tissue, intranasal route, the pulmonary route, the transdermal route, intramuscular, subcutaneous, intratechal, the buccal, inoculation into tissue such as a tumour, or by an implant.
Finally, the present invention is also relating to the field of dianosing as the skilled person would easyly recognice, that the TTSE disclosen in the present inventiion may also refer to a method for diagnosis comprising a construct comprising the monomer polypeptide construct or the oligomer, together with a diagnosing component coupled thereon.
EXAMPLE 1
Design and construction of the pTH6trip E. coli expression vectors for the production of trimerised chimeric fusion proteins .
The plasmid clone pT7H6FXTN123 (Example 2) was used as template for amplification in two Polymerase Chain Reactions (PCR) (Saiki et al . , 1988) with the primer pairs trip-N (SEQ ID NO: 1) and trip-Ca (SEQ ID NO: 2) and trip-N (SEQ ID NO: 1) and trip-Cb (SEQ ID NO: 3) , respectively. The amplified DNA fragments, tripa, comprising nucleotide sequences encoding an IQGR cleavage site for the restriction protease FXa (SEQ ID NO: 4) followed by two sites for the restriction nucleases Bglll and Kpnl, the nucleotide sequence encoding the tetranectin polypeptide sequence for Glu 1 to Lys 52 (SEQ ID NO: 5) followed by recognition sites for the three re- striction endonucleases BamHI, Hindlll, and EcoRI , respectively, and tripb, comprising nucleotide sequences encoding an IQGR cleavage site for the restriction protease FXa (SEQ ID NO: 4) followed by two sites for the restriction nucleases Bglll and Kpnl, the nucleotide sequence encoding the tetra- nectin polypeptide sequence for Glu 1 to Val 49 (SEQ ID NO: 6) followed by recognition sites for the three restriction endonucleases BamHI, Hindlll, and EcoRI, respectively, were subcloned into the plasmid pT7H6 (Christensen et al . , 1991), yielding pTtripa and pTtripb, respectively (Figs. 3 and 4) .
EXAMPLE 2
Tetranectin, localisation of the trimer is ing structural element and stabili ty of the triple alpha helical coiled coil .
The cDNA encoding the reading frame corresponding to the mature tetranectin single chain (SEQ ID NO: 7) was cloned by specific amplification in a Polymerase Chain Reaction (PCR) (Saiki et al . , 1988) of the nucleotide sequences from amino acid residue Glul to Vallδl using 1st strand oligo-dT primed cDNA synthesized from total human placental RNA as template. Primers used in the PCR were SEQ ID NO : 8 and SEQ ID NO: 9. RNA extraction and cDNA synthesis were performed using standard procedures. The amplified reading frame encoding the monomer subunit of tetranectin was at the 5' -end, via the PCR-reaction, linked to nucleotide sequences encoding the amino acid sequence SEQ ID NO: 10 which constitute an IEGR cleavage site for the bovine restriction protease FXa (Nagai, and Thøgersen, 1987) . A glycine residue was, due to the specific design of the 5' -PCR primer (SEQ. ID NO. 8), inserted between the C-terminal arginine residue of the FXa cleavage site (SEQ ID NO. 10) and the tetranectin Glul-resi- due. The amplified DNA fragment was subcloned into the E. coli expression vector pT7H6 (Christensen et al . , 1991) producing the plasmid pT7H6FX-TN123 expressing the tetranectin monomer H6FXTN123 (SEQ ID NO: 25) and into pT7CIIH6, which is a derivative of pT7H6 , where the amino-terminal 32 amino acid residues of the lambda CII protein (SEQ ID NO. 11) are inserted 5' of the six histidine residues (SEQ ID NO. 12) as outlined in Fig. 5, yielding pT7CIIH6FX-TN123 expressing the tetranectin fusion protein CIIH6FXTN123 (SEQ ID NO : 24) . The amino acid sequence of the expressed proteins are shown in Fig. 6 (in SEQ ID NO: 7 is given the amino acid sequence of the mature tetranectin protein) . Furthermore three additional derivatives of tetranectin were constructed (Fig. 8): H6FXTN12 comprising the tetranectin amino acid residues Glul to Val49 (SEQ ID NO: 6) , H6FXTN23 comprising the tetranectin amino acid residues Vail7 to Vallδl (SEQ ID NO: 7) , and H6FXTN3 (SEQ ID NO: 30) comprising the tetranectin amino acid residues Ala45 to Vallδl (SEQ ID NO: 7) . These three tetranectin derivatives were constructed by specific amplification in a PCR using pT7H6FX-TN123 as template and the primer-pairs SEQ ID NO: 8 and SEQ ID NO: 13, SEQ ID NO: 14 and SEQ ID NO: 9, and SEQ ID NO: 15 and SEQ ID NO: 9, respectively. The amplified DNA fragments were subcloned into the E. coli expression vector pT7H6 producing the plasmids pT7H6FX-TN12 , pT7H6FX-TN23, and pT7H6FX-TN3 , respectively (Fig. 7).
To prepare recombinant tetranectin and its derivatives, each of the plasmids pT7H6FX-TN123 , pT7CIIH6FX-TN123 , pT7H6FX-TN12 , pT7H6FX-TN23, and pT7H6FX-TN3 were grown in medium scale (4 x 1 litre; 2xTY medium, 5 mM MgS04 and 100 μg ampicillin) in E. coli BL21 cells, as described by Studier et al . (1990). Exponentially growing cultures at 37°C were at OD600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation.
Cells were resuspended in 150 ml of 0.5 M NaCl, 10 mM
Tris-HCl pH 8, and 1 mM EDTA pH 8. Phenol (100 ml adjusted to pH 8) was added and the mixture sonicated to extract the total protein. Protein was precipitated from the phenol phase by 2.5 volumes of ethanol and centrifugation.
The protein pellet was dissolved in a buffer containing 6M guanidinium chloride, 50 mM Tris-HCl pH 8 and 0.1 M dithio- erythriol . Following gel filtration on Sephadex G-25 (Pharmacia, Sweden) into 8 M Urea, 1 M NaCl , 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol, the crude protein preparation was applied to a Ni2+ activated NTA-agarose column (Ni2+NTA-aga- rose, 75 ml pre-washed with 8 M urea, 1 M NaCl, 50 mM
Tris-HCl pH 8, and 10 mM 2-mercaptoethanol) for purification (Hochuli et al . , 1988) and refolding of the fusion proteins, H6FXTN123, CIIH6FXTN123 , H6FXTN12 , H6FXTN23 , and H6FXTN3.
For this study we chose to prepare our own Ni2+NTA-agarose matrix. A carbodiimide coupling of the N- (5-amino-l-carboxypentyl) iminodiacetic acid metal ligand (synthesis route as described by Dόbeli & Hochuli (EP-A-0 253 303)) to a rigid agarose matrix (Sepharose CL-6B, Pharmacia, Sweden) was performed:
8 g of N- (5-amino-l-carboxypentyl) iminodiacetic acid from the synthesis procedure in 50 ml was adjusted to pH 10 by addition of 29 g of Na2CO3(10 H20) and added to a stirred suspension of activated Sepharose CL-6B in 1 M Na2C03. Reaction was allowed overnight. The Sepharose CL-6B (initially 100 ml suspension) was activated after removal of water by acetone with 7 g of 1, 1' -carbonyldiimidazol under stirring for 15 to 30 min. Upon activation the Sepharose CL-6B was washed with acetone followed by water and 1 M Na2C03.
The NTA-agarose matrix was loaded into a column and "charged" with Ni2+ by slowly passing through 5 column volumes of a 10% NiS04 solution. The amount of Ni2+ on the NTA-agarose matrix, prepared by this procedure, has been determined to 14 μmol per ml matrix. After charging the Ni2+NTA-agarose column was washed with two column volumes of water, one column volume of 1 M Tris-HCl pH 8 and two column volumes of loading buffer before stirred mixing of the Ni2+NTA-agarose matrix with the crude protein extracts in a breaker for 15 to 30 min. All buffers prepared for liquid chromatography were degassed under vacuum prior to addition of reductant and/or use .
The Ni2+NTA-agarose matrix - crude extract mixture was packed in standard glass columns for liquid chromatography (internal diameter: 2.6 cm) to a volume of approximately 40 ml. The columns were washed with 200 ml of 8 M urea, 1 M NaCl, 50 mM Tris-HCl pH 8, and 10 mM 2-mercaptoethanol (Buffer I) and 100 ml 6 M guanidinium chloride, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol (Buffer II) and the adsorbed tetranectin derived fusion proteins H6FXTN123, H6CIIFXTN123 , H6FXTN23, and H6FXTN3 refolded using the cyclic refolding procedure as described (Thøgersen et al . , WO 94/18227).
The fusion protein H6FXTN12 was refolded by removing the guanidinium chloride and 2-mercaptoethanol of buffer II in a gradient over 5 column volumes into 50 mM Tris-HCl pH 8 and 0.5 M NaCl. After completion of the refolding procedures the tetranectin derived fusion proteins were eluted from the
Ni2+NTA-agarose columns with a buffer containing 0.5 M NaCl, 50 mM Tris-HCl, 25 mM EDTA pH 8. The tetranectin fusion proteins H6FXTN123, H6FXTN23, and H6FXTN3 were cleaved with FXa at 4°C overnight in a molar ratio of 1:300. After FXa cleavage the protein samples were concentrated 10 fold by ultrafiltration on YM10 membranes (Amicon) . After ten times dilution of the protein sample with 2 mM CaCl2 , the recombinant tetranectin derivatives TN123, TN23, and TN3 were isolated by ion-exchange chromatography on Q-Sepharose (Pharma- cia, Sweden) in a linear gradient over 10 column volumes from 10 mM Tris-HCl pH 8 , 2 M CaCl2 to 10 mM Tris-HCl pH 8 , 2 mM CaCl2, and 0.5 M NaCl. After elution from the Ni2+NTA-agarose columns the fusion proteins H6CIIFXTN123 and H6FXTN12 were likewise concentrated 10 fold by ultrafiltration on YM10 membranes and gelfiltrated into buffer containing 25 mM Tris- HCl pH 8, 25 mM NaCl, and 2 mM CaCl2, before purification of correctly folded monomer by ion-exchange chromatography on Q-Sepharose as described.
Recombinant full length tetranectin (TN123) produced by these procedures have been analyzed with respect to binding to plasminogen kringle 4 and immobilised fucoidan, expression of antigenic sites, and localization of disulphide bridges. In all criteria tested the produced TN123 behaved identically to isolated naturally human tetranectin (data not shown) . Furthermore TN123 and TN3 have been crystallized (Kastrup et al . , 1996) and the structure has also been determined, all of which bear evidence that a single unique and biologically active folded product had indeed been produced.
Analytical gelf il tration analysis of rTN proteins .
Analytical gelfiltration of the recombinant tetranectin derivatives TN123 , TN3 , and TN23 (Fig. 9) were performed on a Superose 12 HR 10/30 column (Pharmacia, Sweden) with a total volume of 25 ml in 100 mM NaCl and 50 mM Tris-HCl pH 8 and a flow rate of 0.2 ml/min. The Kav value is defined by, Kav= (Ve-Vo) / (Vc-Vo) .
The gelfiltration analysis of TN123 and TN23 show that both proteins are exclusively found as trimers in solution (Kav values of 0.27 and 0.29, respectively), whereas TN3 appeared monomeric (Kav:0.41).
Chemical cross -linking of tetranectin and deriva tives
The recombinant tetranectin derivatives TN123, TN3 , and TN23, together with the fusion proteins CIIH6FXTN123 and H6FXTN12 or mixtures of these derivatives at 1 mg/ml concentrations in cross-linking buffer (0.1 M Sodium borate, pH 9.1) were incubated with dimethylsuberimidate (DMSI, Sigma) . 10 μl aliquots of protein solution were incubated with 1 μl ali- quots of DMSI stock solution (20 mg/ml in cross -linking buffer) for 30 minutes at 25°C before addition of 2 μl quenching ) ) to to H P1
LΠ o LΠ O LΠ o LΠ
Figure imgf000050_0001
with trimerisation of TN123 during subunit exchange. Dimeric TN23 molecules found at low abundance in the sample probably reflects contaminating misfolded disulphide bridged dimers . The fusion protein H6FXTN12 formed homo-trimers upon cross- linking and generated hetero-trimers with TN123 after subunit exchange. Because of the difference in size of full length tetranectin (TN123) and H6FXTN12 the possible nine protein bands resulting from chemical cross-linking are: The four trimers [(TN123)3, (TN123) 2 (H6FXTN12) , (TN123 ) (H6FXTN12) 2 , and (H6FXTN12)3] at approx. 95 kDa , 50 kDa, 37 kDa, and 20 kDa, respectively; the three dimers [(TN123)2, (TN123) (H6FXTN12) , and (H6FXTN12)2] at approx. 45 kDa, 30 kDa, and 15 kDa, respectively; and the two monomers TN123 at 23 kDa and H6FXTN12 at 9 kDa.
Taken together, the gel filtration and the cross-linking analysis of the tetranectin derivatives show that tetranectin, like the collectin group of C-type lectins, is a trimeric molecule and that amino acid residues directly shown to be involved in trimerisation of the tetranectin monomer are located in exon 2 of the protein (Vall7 - Val49) . Furthermore subunit exchange between the trimeric molecules could only be observed after heat denaturation. Amino acid residues Glul to Aspl6 of tetranectin are critical to chemical cross-linking with DMSI and more important appear to stabilize the trimeric molecule because the cross-linking analysis of the mixture TN123 and TN23 showed no decrease in TN123 formation after heat denaturation and possible subunit exchange (Fig. 11) . The stability of the tetranectin trimer was corroborated by a cross-linking analysis with DMSI at different temperatures. Fifteen μl TN123 at 0.3 mg/ml concentration was pre-incubated 10 min. at either 37°C, 50°C, 60°C, or 70°C before addition of 2 μl DMSI (20 mg/ml) . The reaction was allowed to proceed for 15 min. before reaction was quenched with 5 μl of 3M Tris-HCl pH 9.1 and the reaction mixtures allowed to cool to room temperature. SDS-PAGE analysis of reduced samples (Fig. 12) showed, that trimers are readily detectable even at 60°C, although a competing pattern of cross-linking specimens increases at increasing temperatures. The appearance of other cross-linking specimens is probably due to the unfolding of the CRD. The stability of the tetranectin trimerising structural element is further analyzed using a designed chimeric protein in Example 3.
EXAMPLE 3
Design and construction of the recombinant chimeric protein TRIPB -UB - the tetranectin trimerising structural element and ubiqui tin .
A plasmid clone, pLCMHF/UB, generously provided by Dr. O.
Wiborg harbouring a human ubiquitin cDNA insert (SEQ ID: 16) was used as template and SEQ ID NO: 17 together with SEQ ID NO: 18 were used for amplification in a Polymerase Chain Reaction (PCR) (Saiki et al . , 1988) of the nucleotide sequence encoding amino acid residue Ilel to Gly76 of human ubiquitin (SEQ ID: 19) . The amplified DNA fragment was after digestion with the restriction endonucleases BamHI and Hindlll ligated into the BamHI and Hindlll sites of pTtripb (Example 1) yielding pTtripb-UB (Fig. 13) using standard procedures.
To prepare the chimeric fusion protein H6FXtripb-UB (Fig. 14, SEQ ID NO: 31) the plasmid pTtripb-UB was grown in medium scale (4 x 1 litre; 2xTY medium, 5 mM MgS04 and 100 μg ampicillin) in E. coli BL21 cells, as described by Studier et al . (1990) . Exponentially growing cultures at 37°C were at OD600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation. Cells were resuspended in 150 ml of 0.5 M NaCl, 10 mM Tris-HCl pH 8, and 1 mM EDTA pH 8. Phenol 00 ml adjusted to pH 8) was added and the mixture sonicated to extract the total protein. Protein was precipitated from the phenol phase by 2.5 volumes of ethanol and centrifugation. The protein pellet was dissolved in a buffer containing 6 M guanidinium chloride, 50 mM Tris-HCl pH 8 and 0.1 M dithio- erythriol . Following gel filtration on Sephadex G-25 (Pharmacia, Sweden) into 8 M Urea, 1 M NaCl, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol, the crude protein preparation was applied to a Ni2+ activated NTA-agarose column for purification (Hochuli et al . , 1988) and refolding of the fusion protein H6FXtripb-UB .
Synthesis and charging of the Ni2+ activated NTA-agarose matrix is described in Example 2. All buffers for liquid chromatography were degassed prior to use . The fusion protein H6FXtripb-UB was refolded by removing the urea and 2-mercaptoethanol from buffer II in a gradient over 5 column volumes into 50 mM Tris-HCl pH 8 and 0.5 M NaCl. After completion of the refolding procedure the H6FXtripb-UB fusion protein was eluted from the Ni2+NTA-agarose columns with a buffer containing 0.5 M NaCl, 50 mM Tris-HCl, 25 mM EDTA pH 8 and gel filtrated on a Sephadex G50 column (Pharmacia) into 0.1 M Sodium borate pH 9 buffer for chemical cross-linking analysis with DMSI.
The cross-linking analysis experiment was designed both to analyze the oligomeric status of the chimeric fusion protein and the thermal stability of the presumed fusion protein trimer as described in Example 2: Samples of 15 μl H6FXtripb- UB fusion protein, at approximately 1.0 mg/ml concentration, were pre-incubated 10 min. at either 37°C, 50°C, 60°C, or 70°C before addition of 2 μl DMSI (20 mg/ml) . The reactions were allowed to proceed for 15 min. before quenching by addition of 5 μl of 3 M Tris-HCl pH9.1 and the reaction mixtures were allowed to cool to room temperature. SDS-PAGE analysis of reduced samples (Fig. 12) showed, (1) that the fusion protein H6FXtripb-UB is a trimer in solution (monomer at 17 kDa, dimer at 35 kDa, and trimer at 43 kDa) and (2) that a substantial amount of trimer molecules is present even at 70°C. The appearance of other larger cross-linking pro- ducts is probably due to cross-linking of trimers via the ubiquitin part of the fusion protein. EXAMPLE 4
Design and construction of trimerised and hexamerized CEA6 scFv antibodies scFv (CEA6) -TRIPB, TRIPB- scFv (CEA6) and scFv (CEA6) -TRIPB- scFv (CEA6) .
A plasmid clone, pUC19MCH/CEA6 , generously provided by Dr. Kevin Pritchard, Cambridge Antibody Technology Ltd., Mel- bourn, UK, harbouring a nucleotide sequence (SEQ ID: 20) encoding the CEA6 antibody in single-chain Fv (scFv) format, followed in sequence by a "myc tag" (which is a general purification/detection handle) , was used as template in Polymerase Chain Reactions (PCR) (Saiki et al . , 1988) in which the nucleotide sequence encoding the scFv + myc tag was amplified using the primer pairs (SEQ ID: 21 and SEQ ID: 22) and (SEQ ID: 21 and SEQ ID: 23) to generate PCR fragments "A" and "B".
PCR fragment "A" was treated with restrictions enzymes BamHI and Kpnl and the resulting fragment was inserted into Bglll/Kpnl cut pTripb (Example 1) to obtain the vector pTH6FXscFv(CEA6) -tripb (Fig. 15) encoding the H6FXscFv (CEA6) - TRIPB fusion protein (Fig. 16) . PCR fragment "B" was treated with restriction enzymes BamHI and Hindlll and the resulting fragment was inserted into BamHI and Hindlll cut pTripb (Example 1) to obtain the vector pTH6FXtripb-scFv(CEA6) (Fig. 17) encoding the H6FXTRIPB-scFv (CEA6) fusion protein (Fig.18, SEQ ID NO: 33) using standard procedures.
To generate the expression vector pTH6FXscFv (CEA6) -tripbscFv (CEA6) (Fig. 19) encoding the H6FXscFv(CEA6) -TRIPB- scFv(CEA6) fusion protein (Fig. 20, SEQ ID NO: 34) the insert in the vector pTH6FXtripb-scFv (CEA6) was excised using re- striction enzymes BamHI and Hindlll and inserted into the vector pTH6FXscFv(CEA6) -tripb, which had been treated with restriction enzymes BamHI and Hindlll. To prepare the chimeric fusion proteins H6FXscFv (CEA6) -TRIPB (SEQ ID NO: 32), H6FXTRIPB-scFv (CEA6) (SEQ ID NO: 33) and H6FXscFv(CEA6) -TRIPB-scFv (CEA6) (SEQ ID NO: 34) the plasmids pTH6FXscFv(CEA6) -TRIPB, pTH6FXtripb-scFv (CEA6 ) and pTH6FXscFv(CEA6) -tripb- scFv(CEA6) were grown in small scale (1 litre,- 2xTY medium, 5 mM MgS04 and 100 μg ampicillin) in E. coli BL21 cells, as described by Studier et al . (1990). Exponentially growing cultures at 37°C were at OD600 0.8 infected with bacteriophage lambda CE6 at a multiplicity of approximately 5. Cultures were grown at 37°C for another three hours and the cells harvested by centrifugation. Cells were resuspended in 50 ml of 0.5 M NaCl, 50 mM Tris-HCl pH 8, and 1 mM EDTA pH 8. Phenol (50 ml adjusted to pH 8) was added to each and the mixtures were sonicated to extract total protein. After clarification by centrifugation (25 minutes at 10.000 g) crude protein fractions were precipitated from the phenol phases by addition of 2.5 volumes of ethanol and centrifugation. Protein pellets were dissolved in a buffer (15-25 ml) containing 6 M guanidinium chloride, 50 mM Tris-HCl pH 8 and 0.1 M dithioerythriol. Following gel filtration on Sephadex G-25 (Pharmacia, Sweden) into 8 M Urea, 1 M NaCl, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol, the crude protein preparations were applied to Ni2+ activated NTA-agarose columns (75 ml column volume) for purification (Hochuli et al . , 1988). Washing buffer (6 M guanidine-HCl, 50 mM Tris-HCl pH 8 and 10 mM 2-mercaptoethanol) was then flowed through the columns until stable baselines were obtained. Virtually pure fusion proteins could then be eluted by applying a pH gradient to each column (1000 ml gradient in 8 M urea and 10 mM 2-mercaptoethanol obtained by linear (per volume) mixing of solutions containing 50 mM sodium di-hydro- genphosphate (pH 5 buffer) and 50 mM di-sodium hydrogenphos - phate (pH 8 buffer) .
In preparation for in vitro refolding by the method of Thø- gersen et al . (WO 94/18227) 20 mg of each purified fusion protein were mixed in suspensions in refolding "buffer B" (described below) with aliquots of suspensions of Ni2+ acti- vated NTA-agarose matrix sufficient to generate columns of about 75 ml packed bed volume. Each fusion protein was then subjected to the iterative refolding procedure as described for plasminogen kringle 4 in the Thøgersen et al . patent application (WO 94/18227) , except that refolding of the scFv containing fusion proteins was carried out at 10°C using a buffer containing 0.5 M NaCl, 50 mM Tris-HCl pH 8 , 2 mM glutathione and 0.2 mM oxidized glutathione as "buffer A" and a buffer containing 8 M urea, 1 M NaCl, 50 mM Tris-HCl pH 8 and 2 mM glutathione as "buffer B" .
After completion of the refolding procedure each column was washed with 300 ml buffer containing 0.5 M NaCl and 50 mM Tris-HCl pH 8 to wash away glutathione. The refolded fraction of each protein was then eluted from the NTA-agarose matrix by addition of 20 mM EDTA to the elution buffer. After addition of solid urea to achieve a final concentration of about 8 M to each protein sample and dilution or dialysis to reduce NaCl concentrations to below 5 mM, final purification of each correctly folded fusion protein product was then accomplished by ion exchange chromatography (S-Sepharose, Pharmacia, 1,6 (i.d.) by 90 centimeter column in a buffer containing 8 M urea, 5 mM Tris-HCl (from 1 M stock solution at pH 8) and 25 mM sodium acetate (from 1 M stock solution at pH 5) , eluted at 2 ml/min) . After dialysis against aqueous buffers (e.g. phosphate buffered saline) each pure and correctly refolded fusion protein was recovered in yields of 2-6 mg per litre of culture grown. Each protein may be shown by analytical gel filtration, chemical cross -linking analysis, by in vitro affinity measurements and by in vivo efficacy to form a stable homotrimeric molecular complex: The oligomeric status of the H6FXtripb-scFv- (CEA6) fusion protein was analyzed by chemical cross-linking analysis with DMSI: In parallel experiments, samples of H6FXtripb-scFv- (CEA6) at 0.34 mg/ml and TN123 at 0.28 mg/ml in 0.1 M Sodium borate were incubated at room temperature with increasing amounts (0 - 40 μg in 12 μl in total) of DMSI for 30 min. Reactions were quenched by addition of 5 μl 3M Tris-HCl pH 9 and the samples analyzed by SDS-PAGE under reducing conditions (Fig. 21). Like tetranectin, the H6FXtripb-scFV- (CEA6) fusion protein, of approximately 38 kDa, is hereby shown to be a trimer in solution.
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SEQUENCE LISTING
(1) GENERAL INFORMATION
(i) APPLICANT
(A) NAME: Thøgersen, Hans Christian
(B) STREET: Ristrupvej 41
(C) CITY: Mundelstrup
(D) STATE OR PROVINCE:
(E) COUNTRY: Denmark
(F) POSTAL CODE: 8381
(ii) TITLE OF THE INVENTION: Trimerising module
(iii) NUMBER OF SEQUENCES: 34
(iv) COMPUTER-READABLE FORM:
(A) MEDIUM TYPE: Diskette
(B) COMPUTER: IBM Compatible
(C) OPERATING SYSTEM: DOS
(D) SOFTWARE: FastSEQ for Windows Version 2.0
(v) CURRENT APPLICATION DATA: (A) APPLICATION NUMBER:
(2) INFORMATION FOR SEQ ID NO : 1 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 47 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS : single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 1 : CCTGATCAAT CCAGGGAAGA TCTCCTGGTA CCGAGCCACC AACCCAG 47
(2) INFORMATION FOR SEQ ID NO : 2 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 33 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 2 : CCAAGCTTAT TAGGATCCCG TCTGCAGGGC CTG . 33
(2) INFORMATION FOR SEQ ID NO : 3 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 40 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single (D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 3 : GCGAAGCTTA TTAGGATCCC TTCAGGGAGA CCGTCTGCAG 40
(2) INFORMATION FOR SEQ ID NO : 4 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 6 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 4 :
Gly Ser lie Gin Gly Arg 1 5
(2) INFORMATION FOR SEQ ID NO : 5 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 52 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 5 :
Glu Pro Pro Thr Gin Lys Pro Lys Lys lie Val Asn Ala Lys Lys Asp
1 5 10 15
Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
20 25 30
Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr
35 40 45
Val Ser Leu Lys 50
(2) INFORMATION FOR SEQ ID NO: 6:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 49 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 6 :
Glu Pro Pro Thr Gin Lys Pro Lys Lys lie Val Asn Ala Lys Lys Asp 1 5 10 15 Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
20 25 30
Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr
35 40 45
Val
(2) INFORMATION FOR SEQ ID NO: 7:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 181 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 7 :
Glu Pro Pro Thr Gin Lys Pro Lys Lys lie Val Asn Ala Lys Lys Asp
1 5 10 15
Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
20 25 30
Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr
35 40 45
Val Cys Leu Lys Gly Thr Lys Val His Met Lys Cys Phe Leu Ala Phe
50 55 60
Thr Gin Thr Lys Thr Phe His Glu Ala Ser Glu Asp Cys lie Ser Arg 65 70 75 80
Gly Gly Thr Leu Ser Thr Pro Gin Thr Gly Ser Glu Asn Asp Ala Leu
85 90 95
Tyr Glu Tyr Leu Arg Gin Ser Val Gly Asn Glu Ala Glu lie Trp Leu
100 105 110
Gly Leu Asn Asp Met Ala Ala Glu Gly Thr Trp Val Asp Met Thr Gly
115 120 125
Ala Arg lie Ala Tyr Lys Asn Trp Glu Thr Glu lie Thr Ala Gin Pro
130 135 140
Asp Gly Gly Lys Thr Glu Asn Cys Ala Val Leu Ser Gly Ala Ala Asn 145 150 155 160
Gly Lys Trp Phe Asp Lys Arg Cys Arg Asp Gin Leu Pro Tyr lie Cys
165 170 175
Gin Phe Gly He Val 180
(2) INFORMATION FOR SEQ ID NO : 8 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 39 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 8 : CCTGGATCCA TCGAGGGTAG GGGCGAGCCA CCAACCCAG 39
(2) INFORMATION FOR SEQ ID NO : 9 : (i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 25 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 9 : CCGAAGCTTA CACGATCCCG AACTG 25
(2) INFORMATION FOR SEQ ID NO: 10:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 6 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 10:
Gly Ser He Glu Gly Arg 1 5
(2) INFORMATION FOR SEQ ID NO: 11:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 32 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 11:
Met Val Arg Ala Asn Lys Arg Asn Glu Ala Leu Arg He Glu Ser Ala
1 5 10 15
Leu Leu Asn Lys He Ala Met Leu Gly Thr Glu Lys Thr Ala Glu Gly 20 25 30
(2) INFORMATION FOR SEQ ID NO : 12 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 10 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 12 :
Gly Ser His His His His His His Gly Ser 1 5 10 (2) INFORMATION FOR SEQ ID NO : 13 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 25 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 13 : CCGAAGCTTA GACCGTCTGC AGGGC 25
(2) INFORMATION FOR SEQ ID NO : 14 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 39 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 14: GGCGGATCCA TCCAGGGTAG GGTTGTGAAC ACAAAGATG 39
(2) INFORMATION FOR SEQ ID NO: 15:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 36 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 15: CCTGGATCCA TCGAGGGTAG GGCCCTGCAG ACGGTC 36
(2) INFORMATION FOR SEQ ID NO: 16:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 227 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 16:
ATGCAGATCT TTGTGAAGAC CCTCACTGGC AAAACCATCA CCCTTGAGGT CGAGCCCAGT . 60
GACACCATTG AGAATGTCAA AGCCAAAATT CAAGACAAGG AGGGTATCCC ACCTGACCGC 120
AGCGTCTGAT ATTTGCCGGC AAACAGCTGG AAGATGGACG TACTTTGTCT GACTACAATA 180
TTCAAAAGGA GTCTACTCTT CATCTTGTGT TGAGACTTCG TGGTGGT 227
(2) INFORMATION FOR SEQ ID NO: 17:
(i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 27 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 17: TGCTGATCAC AGATCTTTGT GAAGACC 27
(2) INFORMATION FOR SEQ ID NO: 18:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 39 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 18: CGCAAGCTTG CATGCTTAGG ATCCACCACG AAGTCTCAA 39
(2) INFORMATION FOR SEQ ID NO: 19:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 76 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 19:
Met Gin He Phe Val Lys Thr Leu Thr Gly Lys Thr He Thr Leu Glu
1 5 10 15
Val Glu Pro Ser Asp Thr He Glu Asn Val Lys Ala Lys He Gin Asp
20 25 30
Lys Glu Gly He Pro Pro Asp Gin Gin Arg Leu He Phe Ala Gly Lys
35 40 45
Gin Leu Glu Asp Gly Arg Thr Leu Ser Asp Tyr Asn He Gin Lys Glu
50 55 60
Ser Thr Leu His Leu Val Leu Arg Leu Arg Gly Gly 65 70 75
(2) INFORMATION FOR SEQ ID NO: 20:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 786 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:20: CAGGTTCAGC TGCAGCAGTC AGGGGCTGAG GTGAAGAAGC CTGGGTCCTC GGTGAAGGTC 60 TCCTGCAAGG CTTCTGGAGG CACCTTCAGC AACTCTCCTA TCAACTGGCT GCGACAGGCC 120
CCCGGACAAG GGCTTGAGTG GATGGGAAGT ATCATCCCTT CCTTTGGTAC AGCAAACTAC 180
GCTCAGAAGT TCCAGGGCAG ACTCACGATT ACCGCGGACG AATCCACGAG CACAGCCTAC 240
ATGGAGCTGA GCAGCCTGAG ATCTGAGGAC ACGGCCGTGT ATTACTGTGC GGGGCGGAGC 300
CACAACTACG AACTCTACTA TTACTACATG GACGTCTGGG GCCAGGGGAC AATGGTCACC 360
GTCTCGAGTG GTGGAGGCGG TTCAGGCGGA GGTGGCAGCG GCGGTGGCGG ATCGGACATC 420
CAGATGACCC AGTCTCCTTC CACCCTGTCT GCATCTATTG GAGACAGAGT CACCATCACC 480
TGCCGGGCCA GTGAGGGTAT TTATCACTGG TTGGCCTGGT ATCAGCAGAA GCCAGGGAAA 540
GCCCCTAAAC TCCTGATCTA TAAGGCCTCT AGTTTAGCCA GTGGGGCCCC ATCAAGGTTC 600
AGCGGCAGTG GATCTGGGAC AGATTTCACT CTCACCATCA GCAGCCTGCA GCCTGATGAT 660
TTTGCAACTT ATTACTGCCA ACAATATAGT AATTATCCGC TCACTTTCGG CGGAGGGACC 720
AAGCTGGAGA TCAAACGTGC GGCCGCAGAA CAAAAACTCA TCTCAGAAGA GGATCTGAAT 780
GGGGCC 786
(2) INFORMATION FOR SEQ ID NO: 21:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 25 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:21: GGTGGATCCC AGGTTCAGCT GCAGC 25
(2) INFORMATION FOR SEQ ID NO: 22:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 25 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 22: GCCGGTACCG GCCCCATTCA GATCC 25
(2) INFORMATION FOR SEQ ID NO: 23:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 26 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 23: TCCAAGCTTA GGCCCCATTC AGATCC 26
(2) INFORMATION FOR SEQ ID NO: 24:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 228 amino acids
(B) TYPE: amino acid (C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:24:
Met Val Arg Ala Asn Lys Arg Asn Glu Ala Leu Arg He Glu Ser Ala
1 5 10 15
Leu Leu Asn Lys He Ala Met Leu Gly Thr Glu Lys Thr Ala Glu Gly
20 25 30
Gly Ser His His His His His His Gly Ser He Glu Gly Arg Gly Glu
35 40 45
Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala Lys Lys Asp Val
50 55 60
Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr Leu 65 70 75 80
Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr Val
85 90 95
Cys Leu Lys Gly Thr Lys Val His Met Lys Cys Phe Leu Ala Phe Thr
100 105 110
Gin Thr Lys Thr Phe His Glu Ala Ser Glu Asp Cys He Ser Arg Gly
115 120 125
Gly Thr Leu Ser Thr Pro Gin Thr Gly Ser Glu Asn Asp Ala Leu Tyr
130 135 140
Glu Tyr Leu Arg Gin Ser Val Gly Asn Glu Ala Glu He Trp Leu Gly 145 150 155 160
Leu Asn Asp Met Ala Ala Glu Gly Thr Trp Val Asp Met Thr Gly Ala
165 170 175
Arg He Ala Tyr Lys Asn Trp Glu Thr Glu He Thr Ala Gin Pro Asp
180 185 190
Gly Gly Lys Thr Glu Asn Cys Ala Val Leu Ser Gly Ala Ala Asn Gly
195 200 205
Lys Trp Phe Asp Lys Arg Cys Arg Asp Gin Leu Pro Tyr He Cys Gin
210 215 220
Phe Gly He Val 225
(2) INFORMATION FOR SEQ ID NO: 25:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 197 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 25:
Met Gly Ser His His His His His His Gly Ser He Glu Gly Arg Gly
1 5 10 15
Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala Lys Lys Asp
20 25 30
Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
35 40 45
Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr 50 55 60 Val Cys Leu Lys Gly Thr Lys Val His Met Lys Cys Phe Leu Ala Phe 65 70 75 80
Thr Gin Thr Lys Thr Phe His Glu Ala Ser Glu Asp Cys He Ser Arg
85 90 95
Gly Gly Thr Leu Ser Thr Pro Gin Thr Gly Ser Glu Asn Asp Ala Leu
100 105 110
Tyr Glu Tyr Leu Arg Gin Ser Val Gly Asn Glu Ala Glu He Trp Leu
115 120 125
Gly Leu Asn Asp Met Ala Ala Glu Gly Thr Trp Val Asp Met Thr Gly
130 135 140
Ala Arg He Ala Tyr Lys Asn Trp Glu Thr Glu He Thr Ala Gin Pro 145 150 155 160
Asp Gly Gly Lys Thr Glu Asn Cys Ala Val Leu Ser Gly Ala Ala Asn
165 170 175
Gly Lys Trp Phe Asp Lys Arg Cys Arg Asp Gin Leu Pro Tyr He Cys
180 185 190
Gin Phe Gly He Val 195
(2) INFORMATION FOR SEQ ID NO: 26:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 65 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:26:
Met Gly Ser His His His His His His Gly Ser He Glu Gly Arg Gly
1 5 10 15
Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala Lys Lys Asp
20 25 30
Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr
35 40 45
Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr
50 55 60
Val 65
(2) INFORMATION FOR SEQ ID NO: 27:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 180 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 27:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Val
1 5 10 15
Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg Leu Asp Thr Leu 20 25 30 Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala Leu Gin Thr Val
35 40 45
Cys Leu Lys Gly Thr Lys Val His Met Lys Cys Phe Leu Ala Phe Thr
50 55 60
Gin Thr Lys Thr Phe His Glu Ala Ser Glu Asp Cys He Ser Arg Gly 65 70 75 80
Gly Thr Leu Ser Thr Pro Gin Thr Gly Ser Glu Asn Asp Ala Leu Tyr
85 90 95
Glu Tyr Leu Arg Gin Ser Val Gly Asn Glu Ala Glu He Trp Leu Gly
100 105 110
Leu Asn Asp Met Ala Ala Glu Gly Thr Trp Val Asp Met Thr Gly Ala
115 120 125
Arg He Ala Tyr Lys Asn Trp Glu Thr Glu He Thr Ala Gin Pro Asp
130 135 140
Gly Gly Lys Thr Glu Asn Cys Ala Val Leu Ser Gly Ala Ala Asn Gly 145 150 155 160
Lys Trp Phe Asp Lys Arg Cys Arg Asp Gin Leu Pro Tyr He Cys Gin
165 170 175
Phe Gly He Val 180
(2) INFORMATION FOR SEQ ID NO: 28:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 73 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 28:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser
1 5 10 15
Pro Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala
20 25 30
Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg
35 40 45
Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala
50 55 60
Leu Gin Thr Val Ser Leu Lys Gly Ser 65 70
(2) INFORMATION FOR SEQ ID NO: 29:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 69 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 29:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser 1 5 10 15 Pro Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala
20 25 30
Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg
35 40 45
Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala
50 55 60
Leu Gin Thr Gly Ser 65
(2) INFORMATION FOR SEQ ID NO: 30:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 152 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 30:
Met Gly Ser His His His His His His Gly Ser He Glu Gly Arg Ala
1 5 10 15
Leu Gin Thr Val Cys Leu Lys Gly Thr Lys Val His Met Lys Cys Phe
20 25 30
Leu Ala Phe Thr Gin Thr Lys Thr Phe His Glu Ala Ser Glu Asp Cys
35 40 45
He Ser Arg Gly Gly Thr Leu Ser Thr Pro Gin Thr Gly Ser Glu Asn
50 55 60
Asp Ala Leu Tyr Glu Tyr Leu Arg Gin Ser Val Gly Asn Glu Ala Glu 65 70 75 80
He Trp Leu Gly Leu Asn Asp Met Ala Ala Glu Gly Thr Trp Val Asp
85 90 95
Met Thr Gly Ala Arg He Ala Tyr Lys Asn Trp Glu Thr Glu He Thr
100 105 110
Ala Gin Pro Asp Gly Gly Lys Thr Glu Asn Cys Ala Val Leu Ser Gly
115 120 125
Ala Ala Asn Gly Lys Trp Phe Asp Lys Arg Cys Arg Asp Gin Leu Pro
130 135 140
Tyr He Cys Gin Phe Gly He Val 145 150
(2) INFORMATION FOR SEQ ID NO: 31:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 145 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 31:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser
1 5 10 15
Pro Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala 20 25 30 Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg
35 40 45
Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala
50 55 60
Leu Gin Thr Gly Ser Gin He Phe Val Lys Thr Leu Thr Gly Lys Thr 65 70 75 80
He Thr Leu Glu Val Glu Pro Ser Asp Thr He Glu Asn Val Lys Ala
85 90 95
Lys He Gin Asp Lys Glu Gly He Pro Pro Asp Gin Gin Arg Leu He
100 105 110
Phe Ala Gly Lys Gin Leu Glu Asp Gly Arg Thr Leu Ser Asp Tyr Asn
115 120 125
He Gin Lys Glu Ser Thr Leu His Leu Val Leu Arg Leu Arg Gly Gly
130 135 140
Ser 145
(2) INFORMATION FOR SEQ ID NO: 32:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 330 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 32:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser
1 5 10 15
Gin Val Gin Leu Gin Gin Ser Gly Ala Glu Val Lys Lys Pro Gly Ser
20 25 30
Ser Val Lys Val Ser Cys Lys Ala Ser Gly Gly Thr Phe Ser Asn Ser
35 40 45
Pro He Asn Trp Leu Arg Gin Ala Pro Gly Gin Gly Leu Glu Trp Met
50 55 60
Gly Ser He He Pro Ser Phe Gly Thr Ala Asn Tyr Ala Gin Lys Phe 65 70 75 80
Gin Gly Arg Leu Thr He Thr Ala Asp Glu Ser Thr Ser Thr Ala Tyr
85 90 95
Met Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys
100 105 110
Ala Gly Arg Ser His Asn Tyr Glu Leu Tyr Tyr Tyr Tyr Met Asp Val
115 120 125
Trp Gly Gin Gly Thr Met Val Thr Val Ser Ser Gly Gly Gly Gly Ser
130 135 140
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp He Gin Met Thr Gin 145 150 155 160
Ser Pro Ser Thr Leu Ser Ala Ser He Gly Asp Arg Val Thr He Thr
165 170 175
Cys Arg Ala Ser Glu Gly He Tyr His Trp Leu Ala Trp Tyr Gin Gin
180 185 190
Lys Pro Gly Lys Ala Pro Lys Leu Leu He Tyr Lys Ala Ser Ser Leu
195 200 205
Ala Ser Gly Ala Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 210 215 220 Phe Thr Leu Thr He Ser Ser Leu Gin Pro Asp Asp Phe Ala Thr Tyr 225 230 235 240
Tyr Cys Gin Gin Tyr Ser Asn Tyr Pro Leu Thr Phe Gly Gly Gly Thr
245 250 255
Lys Leu Glu He Lys Arg Ala Ala Ala Glu Gin Lys Leu He Ser Glu
260 265 270
Glu Asp Leu Asn Gly Ala Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys
275 280 285
Lys He Val Asn Ala Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu
290 295 300
Glu Leu Lys Ser Arg Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu 305 310 315 320
Lys Glu Gin Gin Ala Leu Gin Thr Gly Ser 325 330
(2) INFORMATION FOR SEQ ID NO: 33:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 331 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 33:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser
1 5 10 15
Pro Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys Lys He Val Asn Ala
20 25 30
Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu Glu Leu Lys Ser Arg
35 40 45
Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu Lys Glu Gin Gin Ala
50 55 60
Leu Gin Thr Gly Ser Gin Val Gin Leu Gin Gin Ser Gly Ala Glu Val 65 70 75 80
Lys Lys Pro Gly Ser Ser Val Lys Val Ser Cys Lys Ala Ser Gly Gly
85 90 95
Thr Phe Ser Asn Ser Pro He Asn Trp Leu Arg Gin Ala Pro Gly Gin
100 105 110
Gly Leu Glu Trp Met Gly Ser He He Pro Ser Phe Gly Thr Ala Asn
115 120 125
Tyr Ala Gin Lys Phe Gin Gly Arg Leu Thr He Thr Ala Asp Glu Ser
130 135 140
Thr Ser Thr Ala Tyr Met Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr 145 150 155 160
Ala Val Tyr Tyr Cys Ala Gly Arg Ser His Asn Tyr Glu Leu Tyr Tyr
165 170 175
Tyr Tyr Met Asp Val Trp Gly Gin Gly Thr Met Val Thr Val Ser Ser
180 185 190
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp
195 200 205
He Gin Met Thr Gin Ser Pro Ser Thr Leu Ser Ala Ser He Gly Asp
210 215 220
Arg Val Thr He Thr Cys Arg Ala Ser Glu Gly He Tyr His Trp Leu 225 230 235 240 Ala Trp Tyr Gin Gin Lys Pro Gly Lys Ala Pro Lys Leu Leu He Tyr
245 250 255
Lys Ala Ser Ser Leu Ala Ser Gly Ala Pro Ser Arg Phe Ser Gly Ser
260 265 270
Gly Ser Gly Thr Asp Phe Thr Leu Thr He Ser Ser Leu Gin Pro Asp
275 280 285
Asp Phe Ala Thr Tyr Tyr Cys Gin Gin Tyr Ser Asn Tyr Pro Leu Thr
290 295 300
Phe Gly Gly Gly Thr Lys Leu Glu He Lys Arg Ala Ala Ala Glu Gin 305 310 315 320
Lys Leu He Ser Glu Glu Asp Leu Asn Gly Ala 325 330
(2) INFORMATION FOR SEQ ID NO: 34:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 592 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: None
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 34:
Met Gly Ser His His His His His His Gly Ser He Gin Gly Arg Ser
1 5 10 15
Gin Val Gin Leu Gin Gin Ser Gly Ala Glu Val Lys Lys Pro Gly Ser
20 25 30
Ser Val Lys Val Ser Cys Lys Ala Ser Gly Gly Thr Phe Ser Asn Ser
35 40 45
Pro He Asn Trp Leu Arg Gin Ala Pro Gly Gin Gly Leu Glu Trp Met
50 55 60
Gly Ser He He Pro Ser Phe Gly Thr Ala Asn Tyr Ala Gin Lys Phe 65 70 75 80
Gin Gly Arg Leu Thr He Thr Ala Asp Glu Ser Thr Ser Thr Ala Tyr
85 90 95
Met Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys
100 105 110
Ala Gly Arg Ser His Asn Tyr Glu Leu Tyr Tyr Tyr Tyr Met Asp Val
115 120 125
Trp Gly Gin Gly Thr Met Val Thr Val Ser Ser Gly Gly Gly Gly Ser
130 135 140
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp He Gin Met Thr Gin 145 150 155 160
Ser Pro Ser Thr Leu Ser Ala Ser He Gly Asp Arg Val Thr He Thr
165 170 175
Cys Arg Ala Ser Glu Gly He Tyr His Trp Leu Ala Trp Tyr Gin Gin
180 185 190
Lys Pro Gly Lys Ala Pro Lys Leu Leu He Tyr Lys Ala Ser Ser Leu
195 200 205
Ala Ser Gly Ala Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp
210 215 220
Phe Thr Leu Thr He Ser Ser Leu Gin Pro Asp Asp Phe Ala Thr Tyr 225 230 235 240
Tyr Cys Gin Gin Tyr Ser Asn Tyr Pro Leu Thr Phe Gly Gly Gly Thr 245 250 255 Lys Leu Glu He Lys Arg Ala Ala Ala Glu Gin Lys Leu He Ser Glu
260 265 270
Glu Asp Leu Asn Gly Ala Gly Thr Glu Pro Pro Thr Gin Lys Pro Lys
275 280 285
Lys He Val Asn Ala Lys Lys Asp Val Val Asn Thr Lys Met Phe Glu
290 295 300
Glu Leu Lys Ser Arg Leu Asp Thr Leu Ala Gin Glu Val Ala Leu Leu 305 310 315 320
Lys Glu Gin Gin Ala Leu Gin Thr Gly Ser Gin Val Gin Leu Gin Gin
325 330 335
Ser Gly Ala Glu Val Lys Lys Pro Gly Ser Ser Val Lys Val Ser Cys
340 345 350
Lys Ala Ser Gly Gly Thr Phe Ser Asn Ser Pro He Asn Trp Leu Arg
355 360 365
Gin Ala Pro Gly Gin Gly Leu Glu Trp Met Gly Ser He He Pro Ser
370 375 380
Phe Gly Thr Ala Asn Tyr Ala Gin Lys Phe Gin Gly Arg Leu Thr He 385 390 395 400
Thr Ala Asp Glu Ser Thr Ser Thr Ala Tyr Met Glu Leu Ser Ser Leu
405 410 415
Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys Ala Gly Arg Ser His Asn
420 425 430
Tyr Glu Leu Tyr Tyr Tyr Tyr Met Asp Val Trp Gly Gin Gly Thr Met
435 440 445
Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly
450 455 460
Gly Gly Gly Ser Asp He Gin Met Thr Gin Ser Pro Ser Thr Leu Ser 465 470 475 480
Ala Ser He Gly Asp Arg Val Thr He Thr Cys Arg Ala Ser Glu Gly
485 490 495
He Tyr His Trp Leu Ala Trp Tyr Gin Gin Lys Pro Gly Lys Ala Pro
500 505 510
Lys Leu Leu He Tyr Lys Ala Ser Ser Leu Ala Ser Gly Ala Pro Ser
515 520 525
Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr He Ser
530 535 540
Ser Leu Gin Pro Asp Asp Phe Ala Thr Tyr Tyr Cys Gin Gin Tyr Ser 545 550 555 560
Asn Tyr Pro Leu Thr Phe Gly Gly Gly Thr Lys Leu Glu He Lys Arg
565 570 575
Ala Ala Ala Glu Gin Lys Leu He Ser Glu Glu Asp Leu Asn Gly Ala 580 585 590

Claims

1. A monomer polypeptide construct comprising at least one tetranectin trimerising structural element (TTSE) which is covalently linked to at least one heterologous moiety, said TTSE being capable of forming a stable complex with two other TTSEs, with the proviso that the heterologous moiety is different from any of the fusion proteins CIIH6FXTN123 , H6FXTN123, H6FXTN12, H6FXTN23, the sequences of which are shown in SEQ ID NOs : 24-27.
2. A monomer polypeptide construct comprising at least one tetranectin trimerising structural element (TTSE) which is covalently linked to at least one heterologous moiety, said TTSE being capable of forming a stable complex with two other TTSEs, said at least one heterologous moiety being one which does not exclusively facilitate expression and/or purification of the monomer polypeptide construct .
3. A monomer polypeptide construct according to claim 1 or 2 , wherein the stable complex includes a triple alpha helical coiled coil.
4. A monomer polypeptide construct according to any of the preceding claims, wherein the heterologous moiety is selected from the group consisting of a ligand binding structure; a toxin,- a detectable label; an in si tu activatable substance; an enzyme; a radioactive moiety; a cytokine; a non-protein- aceous polymer such as a polymeric alkaloid, a polyalcohol, a polysaccharide, a lipid and a polyamine; a photo cross-linking agent; and a group facilitating conjugation of the monomer polypeptide construct to a target.
5. A monomer polypeptide construct according to any αf the preceding claims, which comprises 2 TTSEs which are covalently linked by a spacer moiety which allows both of the 2 TTSEs to take part in complex formation with a third TTSE not being part of the monomer polypeptide construct.
6. A monomer polypeptide construct according to claim 5, wherein the spacer moiety has a length and a conformation which favours complex formation involving both of the two TTSEs which are covalently linked by the spacer moiety.
7. A monomer polypeptide construct according to claim 5 or 6 , wherein the spacer moiety is a polypeptide fragment.
8. A monomer polypeptide construct according to any of claims 1-4, which comprises one single TTSE.
9. A monomer polypeptide construct according to any of the preceding claims, wherein the TTSE is derived from human tetranectin, murine tetranectin, C-type lectin of bovine cartilage, or C-type lectin of shark cartilage.
10. A monomer polypeptide construct according to claim 9, wherein the TTSE comprises a polypeptide sequence which has at least 68% sequence identity with the consensus sequence shown in Fig . 2.
11. A monomer polypeptide construct according to claim 10, wherein the sequence identity with the consensus sequence is at least 75%, such as at least 81%, at least 87%, or at least 92%.
12. A monomer polypeptide construct according to any of claims 9-11, wherein at least one amino acid residue selected from the group consisting of amino acid residue nos . 6, 21, 22, 24, 25, 27, 28, 31, 32, 35, 39, 41, 42, is/are substitu- ted by any non-helix breaking amino acid residue, the amino acid residue numbering referring to amino acid residues in SEQ ID NO: 7.
13. A monomer polypeptide construct according to any of the preceding claims, wherein the at least one TTSE comprises a repeated heptad having the formula a-b-c-d-e-f-g (N to C) , wherein a majority of the amino acids residues a and d are hydrophobic amino acids .
14. A monomer polypeptide construct according to claim 13 , wherein heptad is repeated 3 times and wherein the last occurrence of the heptad has a glutamine residue corresponding to residues a and d.
15. A monomer polypeptide construct according to any of the preceding claims, wherein the at least one heterologous moiety is covalently linked to the TTSE via a peptide bond to the N- or C-terminus of the TTSE peptide chain, via a peptide bond to a side chain in the TTSE, via a bond to a cysteine residue, or when more than one heterologous moity, combinations of these locations .
16. A monomer polypeptide construct according to any of the preceding claims which lacks any free amino and/or carboxy groups .
17. A monomer polypeptide construct according to any of the preceding claims which lacks a substantial part of the N- terminal region of tetranectin which is encoded by exon 1.
18. A monomer polypeptide construct according to any of the preceding claims comprising two heterologous moieties which are linked via peptide bonds to the N- and C-terminus, respectively.
19. A monomer polypeptide construct according to any of the preceding claims which is constructed so as to disfavour formation of complexes between identical TTSEs.
20. An oligomer which is comprised of two monomer polypeptide constructs according to any of claims 1-19, and which comprises at three TTSE's or a multiplum of three TTSE's, or which is comprised of three monomer polypeptide constructs according to any of claims 1-4 or 8-19.
21. An oligomer according to claim 20 which is stable in the temperature range 50-70°C.
22. An oligomer according to claim 20 or 21, which comprises at least one heterologous moiety which is positioned N-termi- nally to a TTSE and at least one heterologous moiety which is positioned C-terminally to a TTSE.
23. An oligomer according to claim 22, wherein the at least one heterologous moiety which is positioned N-terminally to a TTSE and the at least one heterologous moiety which is posi- tioned C-terminally to a TTSE are part of the same monomeric polypeptide construct .
24. An oligomer according to claim 22, wherein the at least one heterologous moiety which is positioned N-terminally to a TTSE and the at least one heterologous moiety which is posi- tioned C-terminally to a TTSE are part of two separate monomeric polypeptide constructs .
25. An oligomer according to any of claims 20-24, wherein each monomer polypeptide construct is designed so as to disfavour formation of trimers including two monomer polypep- tide constructs having identical TTSEs.
26. A method of preparing a monomer polypeptide construct according to any of claims 1-19, the method comprising
isolating the monomer polypeptide construct from a culture comprising a host cell which carries and expresses a nucleic acid fragment which encodes the monomer polypeptide construct, or
synthesizing, by means of chemical peptide synthesis, the monomer polypeptide construct and subsequently isolating the monomer polypeptide construct from the reaction mixture, or preparing a TTSE in a culture comprising a host cell which carries and expresses a nucleic acid fragment which encodes the TTSE, subsequently linking covalently at least one heterologous moiety to the TTSE, and thereafter isolating the resulting monomer polypeptide construct, or
synthesizing, by means of chemical peptide synthesis, a TTSE, subsequently linking covalently at least one heterologous moiety to the TTSE, and thereafter the isolating the resulting monomer polypeptide construct from the reaction mixture,
and optionally subjecting the monomer polypeptide construct to further processing.
27. A method for preparing a dimeric oligomer according to claim 20 which comprises
- admixing a monomer polypeptide construct according to any of claims 1-19 which includes two TTSEs (construct 1) with a monomer polypeptide construct according to any of claims 1-4 or 8-19 which includes only one TTSE (construct 2) ,
- effecting the two TTSE's of construct 1 to complex with the TTSE of construct 2, and
isolating the resulting dimer and optionally subjecting the dimer to further processing.
28. A method for preparing a trimeric oligomer according to claim 20 which comprises
admixing three monomer polypeptide constructs according to any of claims 1-19 with each other,
effecting complex formation between one TTSE of each monomer polypeptide construct, and isolating the resulting trimer and optionally subjecting the trimeric oligomer to further processing.
29. A kit comprising
a first package comprising at least one container means, each at least one container means containing a monomer polypeptide construct according to any of claims 1-19,
a second package comprising at least one container means, each at least one container means in the second package containing a monomer polypeptide construct according to any of claims 1-19, the second package being different from the first package with respect to choice and/or number of monomer polypeptide constructs included therein, and optionally
a third package comprising at least one container means, each at least one container means in the third package containing a monomer polypeptide construct according to any of claims 1-19, the second package being different from the first and second packages with respect to choice and/or number of monomer polypeptide constructs included therein.
30. A kit according to claim 29, wherein the at least one container means in each package contains mutually distinct monomer polypeptide constructs.
31. A kit according to claim 29 or 30, wherein all container means comprised in the kit comprises mutually distinct polypeptide constructs .
32. A nucleic acid fragment in isolated form which encodes a TTSE as defined in any of claims 1-19 or which encodes the polypeptide part of a monomer polypeptide construct according to any of claims 1-19, with the proviso that the nucleic acid fragment is different from one that encodes native members of the tetranectin family, and that the nucleic acid fragment is different from one that encodes any of the fusion proteins CIIH6FXTN123, H6FXTN123, H6FXTN12, H6FXTN23, the sequences of which are shown in SEQ ID NOs : 24-27.
33. A replicable vector which comprises a nucleic acid fragment according to claim 32.
34. A transformed host cell, which comprises a nucleic acid fragment according to claim 32 or a replicable vector according to claim 32.
35. Use of a monomer polypeptide construct according to any of claims 1-19 or to a an oligomer construct according to any of claims 20-25 for targeted gene therapy involving selective delivery of the material for transfection or infection of the specific population of cells.
36. The use according to claim 35 wherein the at least one heterologous moity comprises a moiety selected from a ligand binding structure such as a receptor molecule or the ligand binding part of a receptor molecule, and wherein the gene therapy involves the delivery of nucleic acids to the desired population of cells by use of a viral vector directed to cells displaying the artificial receptor complex corresponding to the heterologous moity.
37. The use of a monomer polypeptide construct according to any of claims 1-19 or to a an oligomer according to any of claims 20-25 as a component of a chimaeric product having low antigenicity in humans relative to formulations comprising on or more components of non-human origin.
38. The use of a monomer polypeptide construct according to any of claims 1-19 or to a an oligomer according to any of claims 20-25 as a vehicle for assembling antibody fragments into oligomeric or multivalent entities for generating chimeric artificial antibodies having preselected pharmacokinetic and/or pharmadynamic properties.
39. The use of a monomer polypeptide construct according to any of claims 1-19 or to a an oligomer according to any of claims 20-25 for delivering an imaging or toxin-conjugated antibody to a tumor.
40. The use of a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25 as a vehicle delivering an substance to a target cell or tissue.
41. The use of a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25 for a labelled construct wherein the label is coupled to one or to of the TTSE monomer units.
42. The use of a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25 for protein library technology, such as phage display technology.
43. The use according to claim 42 comprising a poly nucleotide molecule encoding one or more TTSE.
44. The use according to claim 43 comprising a vector encoding one or more TTSE .
45. The use of a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25 for the preparation of a pharmacutical composition.
46. The use according to any to claim 45, wherein the pharmaceutical composition further comprises a pharmaceutically acceptable excipient .
47. The use according to claim 45 or 46 wherein the pharmaceutical composition is administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal, vaginal or conjunctival tissue, the intranasal route, the pulmonary route, the transdermal route, the intramuscular routed, subcutaneous route, intratechal route, inoculation into tissue such as a tumour, or by an implant.
48. The use according to any of claims 35 to 47 wherein the monomer polypeptide construct according to any of claims 1-19 or the oligomer according to any of claims 20-25 is comprised in a liposome
49. A method for treating or preventing of a disease comprising administering to the subject in need thereof an effective amount of a pharmceutical composition as defined in any of claims 45 and 46.
50. A method for treating or preventing a disease comprising administering to the subject in need thereof an effective amount of a relevant pharmceutical coupled to a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25.
51. A method for targeted gene therapy comprising use of a monomer polypeptide construct according to any of claims 1-19 or to a oligomer according to any of claims 20-25.
52. A method of human gene therapy comprising use of a monomer polypeptide construct according to any of claims 1-19 or to an oligomer according to any of claims 20-25 wherein at least one TTSE is modifyed with a membrane integrating or associating entity having affinity to the specific population of cells in the body relevant for the gene therapy.
53. A method according to any of claims 49 to 52 wherein the monomer polypeptide construct according to any of claims 1-19 or the oligomer according to any of claims 20-25 is administered by a route selected from the group consisting of the intraveneous route, the intraarterial route, the transmembraneus route of the buccal, anal og vaginal tissue, intranasal route, the pulmonary route, the transdermal route, intramuscular, subcutaneous, intratechal, the buccal, inoculation into tissue such as a tumour, or by an implant.
54. A method for prevention and/or treating a disease, comprising administering to a mammal in need thereof a prophylactically or therapeutically effective amount of a construct comprising the monomer polypeptide construct according to any of claims 1-19 or the oligomer according to any of claims 20-25.
55. A method for diagnosis comprising a construct comprising the monomer polypeptide construct according to any of claims 1-19 or the oligomer according to any of claims 20-25 together with a diagnosing component coupled thereon.
PCT/DK1998/000245 1997-06-11 1998-06-11 Trimerising module Ceased WO1998056906A1 (en)

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DE69827507T DE69827507T2 (en) 1997-06-11 1998-06-11 TRIMERIZING MODULE
AT98929225T ATE282092T1 (en) 1997-06-11 1998-06-11 TRIMERIZING MODULE
AU79065/98A AU736707B2 (en) 1997-06-11 1998-06-11 Trimerising module
US11/452,434 US7642044B2 (en) 1997-06-11 2006-06-14 Trimerising module
US12/405,021 US8318679B2 (en) 1997-06-11 2009-03-16 Trimerising module
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