WO2000031114A1 - DNA ENCODING PROTEINS THAT INHIBIT Hsp70 FUNCTION - Google Patents
DNA ENCODING PROTEINS THAT INHIBIT Hsp70 FUNCTION Download PDFInfo
- Publication number
- WO2000031114A1 WO2000031114A1 PCT/US1999/027651 US9927651W WO0031114A1 WO 2000031114 A1 WO2000031114 A1 WO 2000031114A1 US 9927651 W US9927651 W US 9927651W WO 0031114 A1 WO0031114 A1 WO 0031114A1
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- WO
- WIPO (PCT)
- Prior art keywords
- hspbp
- seq
- hsp70
- amino acid
- polynucleotide fragment
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
- C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
- C07K14/4702—Regulators; Modulating activity
- C07K14/4703—Inhibitors; Suppressors
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
Definitions
- This invention generally relates to the field of molecular medicine and in particular to a novel set of heat-shock protein- binding proteins, and to polynucleotides encoding them, useful in the regulation of physiological events in which one or more 70 kiloDalton heat-shock proteins (Hsp70) are involved, such as normal development, cellular stress responses, heart disease, and cancer.
- Hsp70 70 kiloDalton heat-shock proteins
- heat shock proteins can be induced by a variety of stress-related stimuli besides heat: anoxia, ethanol and certain heavy metal ions also stimulate increased expression and activity by these proteins. Hence, such proteins commonly are more broadly referred to by those in the art as heat stress or, simply, stress proteins.
- Hsp70 a member of a multigene family whose genes are expressed under a wide variety of environmental conditions and are found in all cells.
- Hsp70 and related proteins (such as Hsp72, Hsc70, and Grp78) contain
- Hsp70 plays 20 a role in DNA replication, transport of proteins across membranes, binding of proteins to the endoplasmic reticulum, and uncoating clathrin coated vesicles. S. Lindquist and E.A. Craig, Annual Revue of Genetics. 22:631-77 (1988). Furthermore, Hsp70 is known to 25 associate with nonsterified fatty acids, palmitic acid, stearic acid, and myristic acid and to be involved in signal transduction pathways in the cytoplasm. Hohfeld, Jorg, et al., Hip, a Novel Cochaperone Involved in the Eukaryotic Hsc70/Hsp40 Reaction Cycle . Cell vol. 83, 30 589-598 (November 17, 1995).
- Hsp70 As a “chaperone, "a protein that stabilizes other proteins against aggregation and that mediates the 35 folding of newly translated polypeptides in the cytosol and organelles.
- Hsp70 Proper functioning of Hsp70 as a protein chaperone is dependent on its bound nucleotide state. Specifically, the ATP form of Hsp70 binds substrate very poorly and therefore must be converted to the ADP form before the misfolded protein can bind. Then, the high affinity of Hsp70 for ATP is utilized to "power" the protein folding and other functions of Hsp70, as much energy is generated by the hydrolysis of bound ATP.
- Hsp70 can associate.
- the DNAJ-like proteins bind protein substrates exhibiting secondary and tertiary structure but have very low affinity for polypeptides in unfolded conformations.
- Hsp70 proteins bind unfolded proteins best.
- Hsp40 stimulates the ATPase of Hsp70 and therefore results in production of the ADP form of Hsp70, which facilitates binding to substrate.
- Another Hsp70 regulator, the Hip co-chaperone protein binds to the ATPase domain of Hsp70, thereby promoting the assembly of chaperone complexes and prolonging the time window during which a Hsp70 protein can interact stably with unfolded polypeptides. Hohfeld, Jorg, et al., Hip, a Novel Cochaperone Involved in the Eukaryotic H ⁇ c70/Hsp40 Reaction Cycle . Cell vol.
- Hsp70 a regulator named Hop modulates the binding of Hsp70 to Hsp90, thereby stimulating Hsp70-mediated refolding of a denatured protein.
- Hop a regulator of Hsp70 is a 16-kDa protein that is a member of the Nm23/nucleoside diphosphate kinase family. This regulator monomerized Hsc70 (a protein closely related to Hsp70) and assisted in releasing Hsc70 from bound substrate.
- cysteine string protein which is a secretory vesicle protein, and auxilin, a clathrin-associated protein, can both activate Hsc70 ATPase activity. Chamberland, L.H. and R.D.
- Hsp70-mediated refolding inhibit Hsp70-mediated refolding.
- the RAP/HAP46 proteins which inhibit binding of misfolded proteins to Hsp70, and BAG-1 , which causes the release of ADP from Hsp70, both down-regulate Hsp70 activity.
- Zeiner, M. et al. Mammalian protein RAP46 : an interaction partner and modulator of 70 dDa heat ⁇ hock protein ⁇ .
- EMBO J. 16:18, pp. 5483-5490 (1997); Takayama, S. et al., BAG-1 modulate ⁇ the chaperone activity of Hsp70/H ⁇ c70.
- EMBO J. 16:16, pp. 4887-4896 (1997).
- HspBP-1 and HspBP-2 human heat-shock protein binding protein
- a second object of the invention is to provide the deduced polypeptide sequences according to the cloned polynucleotide sequences encoding novel human heat-shock protein-binding proteins.
- Another object of the invention is to provide rat, mouse, and zebrafish gene homologues of novel human heat-shock protein-binding proteins.
- Still another object of the invention is to provide a means of inhibiting the activity of Hsp70 and related proteins using novel heat-shock protein-binding proteins,
- Yet another object of the invention is to provide a means of inhibition of the apoptotic activity of Hsp70 and related proteins using novel heat-shock protein-binding proteins.
- the invention features substantially purified human heat-shock protein- binding proteins (HspBP), designated HspBP-1 and HspBP-2, having the amino acid sequence shown in SEQ ID NO:l and in SEQ NO: 2, respectively. Furthermore, the invention features isolated and substantially purified polynucleotides that encode HspBP-1 or HspBP-2 having the nucleotide sequence shown in SEQ ID NO: 3 and SEQ ID NO: 4, respectively.
- HspBP human heat-shock protein- binding proteins
- the invention features nucleic acid sequences encoding polypeptides, oligonucleotides, peptide nucleic acids, fragments, portions or antisense molecules thereof, and expression vectors and host cells comprising polynucleotides that encode human HspBP and its mouse (HspBPM; SEQ ID NO: 5), rat (HspBPR; SEQ ID NO: 6), and zebrafish (HspBPF; SEQ ID NO: 7) homologues.
- the invention features pharmaceutical compositions comprising substantially purified HspBP.
- Fig. 1 is a schematic view of Hsp70 showing its three functional domains.
- Fig. 2A and 2B shows the amino acid sequence alignments among human HspBP-1 (SEQ ID NO:l) and HspBP-2 (SEQ ID NO: 2) and the homologous mouse (HspBPM; SEQ ID NO: 8),rat (HspBPR; SEQ ID NO:9), and zebrafish (HspBPF; SEQ ID NO: 10) heat-shock protein binding proteins.
- Amino acid sequence identity among species is highlighted in black. Small stars (*) below residues indicate conservation of any amino acid among all species, while large stars ( ) above residues indicate conservation of the amino acid cysteine (C) among all species. When four of the five amino acids for a particular position are identical, a period ( .
- a residue or a colon ( : ) below a residue indicate the degree to which chemical properties, such as size and charge, are shared between the identical and non-identical residues, with a period indicating partial chemical relatedness and a colon indicating high chemical relatedness.
- the dashes (-) indicate that a protein lacks an amino acid at that particular position of the alignment.
- the invention is based on the discovery of novel polynucleotides encoding two isoforms of human HspBP, and the use of these polynucleotides and proteins in discovering and isolating the homologous polynucleotides and proteins of several different species, including mouse, rat, and zebrafish.
- the polynucleotides and proteins of the invention are useful for research on pathways in which active Hsp70 and related proteins participate, such as apoptosis, development, and signal transduction.
- the invention is useful in the research and in the treatment of maladies involving active Hsp70, such as various types of cancer and heart disease.
- hypoxic stress is a signal that increases the amount of Hsp70 in cardiac tissue, whereupon Hsp70 helps cells survive by binding to partially denatured proteins and assisting in the refolding of these proteins into more stable native structures.
- Such assistance would be extremely important in proving protection to the heart during periods of hypoxia such as during an infarct or during surgery when blood flow to the heart may be temporarily halted.
- Hsp70-inhibiting proteins such as the HspBP
- Hsp72 a member of the Hsp70 family, has been shown to inhibit a signal transduction pathway leading to programmed cell death by preventing stress-induced activation of Jun N-terminal kinase, JNK. Gabai, V.L. et al . H ⁇ p70 Prevents Activation of Stre ⁇ Kina ⁇ e . JBC 272:29, pp. 18033-18037 (July 18, 1997).
- Hsp70 is known to block the apoptotic process by blocking the activation of the caspase protease cascade.
- HspBP may play a role in promoting apoptosis by halting the inhibitory action of Hsp72 on JNK. By promoting apoptosis, HspBP may be useful in the killing of, for example, cancer cells.
- the invention encompasses polypeptides comprising the amino acid sequences of SEQ ID NO:l (HspBP-1; GenBank
- HspBP-1 is 359 amino acids long, while HspBP-2 is 362 amino acids in length.
- the invention also encompasses polynucleotides which encode HspBP.
- any nucleic acid sequence which encodes an amino acid sequence of a HspBP can be used to produce recombinant molecules which express HspBp.
- the invention comprises the polynucleotide sequences encoding HspBP-1 (SEQ ID NO: 3) and HspBP-2 (SEQ ID NO:4).
- the invention further encompasses HspBP variants.
- a preferred variant is one having at least 90% amino acid sequence similarity to the HspBP amino acid sequences identified by SEQ ID NO:l and SEQ ID NO: 2. Most preferably, however, is a HspBP variant having at least 95% amino acid sequence similarity to SEQ ID NO:l or SEQ ID NO: 2.
- HspBP-l The deduced amino acid sequences of the HspBP of humans (HspBP-l; SEQ ID N0:1 and HspBP-2; SEQ ID NO:2), mice (HspBPM; SEQ ID NO: 8), rats (HspBPR; SEQ ID NO: 9), and zebrafish (HspBPF; SEQ ID NO: 10) are shown in Fig. 2A and 2B in alignment using the CLUSTALW computer program (www.mbshortcuts.com/cgi-bin/mbsalign/alignform.cgi) . As indicated by the black shading in Fig. 2A and 2B, the amino acid sequences of HspBP for all species tested are highly conserved.
- nucleotide sequences which encode HspBP and their variants are preferably capable of hybridizing to the nucleotide sequence of the naturally occurring transcription sequences under appropriately selected conditions of stringency, it can be advantageous to produce nucleotide sequences encoding HspBP or their derivatives possessing a substantially different codon usage.
- codons may be selected to increase the rate at which expression of the peptide occurs in a particular prokaryotic or eukaryotic expression host in accordance with the frequency with which particular codons are utilized by the host.
- RNA transcripts having more desirable properties such as a greater stability or half-life, than transcripts produced from the naturally occurring sequence.
- a DNA sequence, or portions thereof, encoding HspBP and their derivatives may be produced entirely by synthetic chemistry. Subsequently, the synthetic nucleotide sequence may be inserted into any of the many available DNA vectors and cell systems using reagents that are commonly available. Moreover, synthetic chemistry may be used to introduce mutations into a sequence encoding HspBP or any portion thereof .
- polynucleotide sequences that are capable of hybridizing to the nucleotide sequences of SEQ ID NO: 3 or SEQ ID NO: 4 under various conditions of stringency.
- Hybridization conditions are based on the melting temperature (Tm) of the nucleic acid binding complex or probe, as taught in Berger and Ki mel (1987, Guide to Molecular Cloning Techniques , Methods in Enzymology, v.152, Academic Press, San Diego, CA) .
- Natural, modified, or recombinant nucleic acid sequences may be ligated to a heterologous sequence to encode a fusion protein.
- One may, for example, screen a peptide library for inhibitors of HspBP activity by encoding a chimeric HspBP that can be detected by a commercially available antibody.
- a fusion protein may be engineered to contain a cleavage site located between the HspBP encoding sequence and the heterologous protein sequence, so that HspBP may be cleaved and purified away from the heterologous moiety.
- Methods well known in the art can be used to construct expression vectors containing sequences encoding HspBP and appropriate transcriptional and translational control elements. Methods may include in vitro recombinant DNA techniques, synthetic techniques, and in vivo genetic recombination in a variety of expression vector/host systems, such as bacteria transformed with recombinant bacteriophage or plasmids or insect cell systems infected with viral expression vectors such as the baculovirus. These methods are described in standard laboratory references, such as Sambrook, J. et al . Molecular Cloning, A Laboratory Manual , Cold Spring Harbor Press, Plainview, N.Y. (1989).
- Altered nucleic acids encoding HspBP which may be used in accordance with the invention include deletions, insertions or substitutions of different nucleotides resulting in a polynucleotide that encodes the same or a functionally equivalent HspBP.
- the protein may also show deletions, insertions or substitutions of amino acid residues which produce a silent change and result in functionally equivalent HspBP. Deliberate amino acid substitutions may be made on the basis of similarity in polarity, charge, solubility, hydrophobicity , hydrophilicity, and/or the amphipathic nature of the residues as long as the biological activity of HspBP is retained.
- an "allele” or “allelic sequence” is an alternative form of the nucleic acid sequence encoding HspBP. Alleles result from a mutation, i.e. a change in the nucleic acid sequence, and generally produce altered mRNAs or polypeptides whose structure or function may or may not be altered. Any given gene may have none, one or many allelic forms. Common mutational changes which give rise to natural deletions, additions or substitutions of amino acids. Each of these types of changes may occur alone, or in combination with the others, one or more times in a given sequence .
- HspBP may be used therapeutically. Examples include, but are not limited to, administering HspBP through the introduction of an expression vector into a subject for in vivo therapy, administering a vector expressing antisense of a polynucleotide encoding HspBP, or administering HspBP as part of a pharmaceutical composition.
- appropriate agents for use in combination with HspBP for therapy may include any conventional pharmaceutical carrier such as saline or buffered saline (intravenous dosing) and dextrose or water (oral dosing) . Further details on techniques for formulation and administration may be found in the latest edition of Remington' s Pharmaceutical Science ⁇ (Maack Publishing Co., Easton, PA).
- a human heart cDNA library (Clontech, Palo Alto, CA) containing 3X10 6 independent clones was screened.
- This library was made in the pGADIO cloning vector that had cDNAs fused to the activation domain of the GAL4 transcription activator. Methods for screening of the library were according to the manual provided by Clontech. Clones that lacked the DNA-binding domain/target plasmid but retained the activation domain/library plasmid were isolated using cycloheximide selection (Matchmaker Supplement Kit, Clontech). The candidate Leu+, Trp- clones were then mated to Y187 (MAT ) yeast strains carrying different test plasmids. Diploids from the mating were selected (Trp+, Leu+, and His+) and screened for the ability to produce ⁇ -galactosidase.
- the cDNA inserts obtained for these ⁇ -galactosidase positive clones can then be sequenced and further characterized by standard molecular biological methods.
- well-known methods for DNA sequencing may be used which employ such enzymes as the Klenow fragment of DNA polymerase I, Sequenase (TM) (U.S. Biochemical Corp., Cleveland OH), Taq polymerase (Perkin Elmer, Norwalk, CN) , or combinations of recombinant polymerases and proofreading exonucleases such as the ELONGASE Amplification System marketed by Gibco BRL (Gaithersburg, MD) .
- the process is automated with machines such as the Hamilton Micro Lab 2200 (Hamilton, Reno NV) , Peltier Thermal Cycler (PTC200; MJ Research, Watertown Mass.) and the ABI 377 DNA sequencers (Perkin Elmer).
- machines such as the Hamilton Micro Lab 2200 (Hamilton, Reno NV) , Peltier Thermal Cycler (PTC200; MJ Research, Watertown Mass.) and the ABI 377 DNA sequencers (Perkin Elmer).
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- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
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- General Health & Medical Sciences (AREA)
- Gastroenterology & Hepatology (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- Zoology (AREA)
- Genetics & Genomics (AREA)
- Medicinal Chemistry (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Toxicology (AREA)
- Peptides Or Proteins (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
Abstract
Description
Claims
Priority Applications (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| AU17420/00A AU1742000A (en) | 1998-11-20 | 1999-11-19 | Dna encoding proteins that inhibit hsp70 function |
| EP19990960551 EP1135405A4 (en) | 1998-11-20 | 1999-11-19 | DNA ENCODING PROTEINS THAT INHIBIT Hsp70 FUNCTION |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US10935198P | 1998-11-20 | 1998-11-20 | |
| US60/109,351 | 1998-11-20 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO2000031114A1 true WO2000031114A1 (en) | 2000-06-02 |
Family
ID=22327203
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US1999/027651 Ceased WO2000031114A1 (en) | 1998-11-20 | 1999-11-19 | DNA ENCODING PROTEINS THAT INHIBIT Hsp70 FUNCTION |
Country Status (4)
| Country | Link |
|---|---|
| US (3) | US6410713B1 (en) |
| EP (1) | EP1135405A4 (en) |
| AU (1) | AU1742000A (en) |
| WO (1) | WO2000031114A1 (en) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2001081545A3 (en) * | 1999-11-19 | 2002-03-21 | Vincent Guerriero | Regulation of gene expression by hspbp1 |
Families Citing this family (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| GB0227346D0 (en) | 2002-11-22 | 2002-12-31 | Chiron Spa | 741 |
| US20060051396A1 (en) * | 2004-06-16 | 2006-03-09 | Affinergy, Inc. | Biofunctional coatings |
| CN101827564A (en) * | 2007-09-04 | 2010-09-08 | 阿费内基有限公司 | Methods and compositions for delivery of growth factor to fibrous connective tissue |
| BR102012033804A2 (en) * | 2012-12-28 | 2014-08-26 | Ubea | HSP70 ALLOY COMPOUND, ANTI-TUMOR PHARMACEUTICAL COMPOSITION, ITS PRODUCTION PROCESSES, TREATMENT METHOD AND USES |
Family Cites Families (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1997024140A1 (en) * | 1996-01-02 | 1997-07-10 | The Board Of Trustees Of Leland Stanford Junior University | Interaction of hla proteins with members of the hsp70 family of proteins |
| US5955312A (en) | 1997-02-24 | 1999-09-21 | Incyte Pharmaceuticals, Inc. | DNA encoding a novel microtubule-associated protein |
-
1999
- 1999-11-19 EP EP19990960551 patent/EP1135405A4/en not_active Withdrawn
- 1999-11-19 AU AU17420/00A patent/AU1742000A/en not_active Abandoned
- 1999-11-19 WO PCT/US1999/027651 patent/WO2000031114A1/en not_active Ceased
- 1999-11-19 US US09/444,336 patent/US6410713B1/en not_active Expired - Fee Related
-
2002
- 2002-03-07 US US10/093,045 patent/US6903202B2/en not_active Expired - Fee Related
- 2002-03-07 US US10/093,246 patent/US6908985B2/en not_active Expired - Fee Related
Non-Patent Citations (6)
| Title |
|---|
| "Cloning Systems", STRATAGENE,, 1994, pages 42 - 43, XP002922487 * |
| "Overview of Molecular Biology Products", PHAMACIA BIOTECH.,, 1996, pages 107, 110-117, 139, 163-165,, XP002922486 * |
| FIX J.A.: "Oral Controlled Release Technology for Peptides: Status and Future Prospects", PHARMACEUTICAL RESEARCH, vol. 13, no. 12, 1996, pages 1760 - 1764, XP002922488 * |
| HILLIER ET AL.: "Generation and Analysis of 280.000 Human Expressed Sequence Tags", GENOME RESEARCH,, September 1996 (1996-09-01), pages 807 - 827, XP002922485 * |
| See also references of EP1135405A4 * |
| TAKAKURA ET AL.: "Macromolecular Carrier Systems for Targeted Drug Delivery: Pharmacokinetic Considerations on Biodistribution", PHARMACEUTICAL RESEARCH, vol. 13, no. 6, 1996, pages 820 - 831, XP002922489 * |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2001081545A3 (en) * | 1999-11-19 | 2002-03-21 | Vincent Guerriero | Regulation of gene expression by hspbp1 |
Also Published As
| Publication number | Publication date |
|---|---|
| US20030023071A1 (en) | 2003-01-30 |
| US6908985B2 (en) | 2005-06-21 |
| AU1742000A (en) | 2000-06-13 |
| US6903202B2 (en) | 2005-06-07 |
| US20020151708A1 (en) | 2002-10-17 |
| EP1135405A1 (en) | 2001-09-26 |
| US6410713B1 (en) | 2002-06-25 |
| EP1135405A4 (en) | 2002-10-29 |
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