WO2002014555A3 - Single-labeled oligonucleotide probes - Google Patents

Single-labeled oligonucleotide probes Download PDF

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Publication number
WO2002014555A3
WO2002014555A3 PCT/US2001/025231 US0125231W WO0214555A3 WO 2002014555 A3 WO2002014555 A3 WO 2002014555A3 US 0125231 W US0125231 W US 0125231W WO 0214555 A3 WO0214555 A3 WO 0214555A3
Authority
WO
WIPO (PCT)
Prior art keywords
probes
nucleic acid
methods
labeled oligonucleotide
oligonucleotide probes
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2001/025231
Other languages
French (fr)
Other versions
WO2002014555A2 (en
Inventor
Carl T Wittwer
Andrew O Crockett
Brian E Caplin
Wade Stevenson
Lori A Wagner
Jian Chen
Noriko Kusukawa
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Biofire Defense LLC
University of Utah Research Foundation Inc
Original Assignee
University of Utah Research Foundation Inc
Idaho Technology Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by University of Utah Research Foundation Inc, Idaho Technology Inc filed Critical University of Utah Research Foundation Inc
Priority to DE60121342T priority Critical patent/DE60121342T2/en
Priority to JP2002519680A priority patent/JP5213297B2/en
Priority to CA2417986A priority patent/CA2417986C/en
Priority to EP01959722A priority patent/EP1307592B1/en
Publication of WO2002014555A2 publication Critical patent/WO2002014555A2/en
Anticipated expiration legal-status Critical
Publication of WO2002014555A3 publication Critical patent/WO2002014555A3/en
Ceased legal-status Critical Current

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C12Q1/6818—Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Saccharide Compounds (AREA)

Abstract

Probes and methods are provided for detection and analysis of nucleic acid sequences. The probes are single-labeled oligonucleotide probes whose fluorescence emission changes in response to probe-target hybridization and dissociation. The methods are for analyzing one or multiple nucleic acid loci using the probes. This invention further relates to the use of fluorescence changes in single-labeled probes for melting curve analysis, genotyping, and pathogen detection, and to methods for quantification of specific sequences in real-time monitoring of nucleic acid amplification.
PCT/US2001/025231 2000-08-11 2001-08-10 Single-labeled oligonucleotide probes Ceased WO2002014555A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
DE60121342T DE60121342T2 (en) 2000-08-11 2001-08-10 SIMPLY MARKED OLIGONUCLEOTIDE DONES
JP2002519680A JP5213297B2 (en) 2000-08-11 2001-08-10 Single label oligonucleotide probe
CA2417986A CA2417986C (en) 2000-08-11 2001-08-10 Single-labeled oligonucleotide probes
EP01959722A EP1307592B1 (en) 2000-08-11 2001-08-10 Single-labeled oligonucleotide probes

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US22472600P 2000-08-11 2000-08-11
US60/224,726 2000-08-11
US24061000P 2000-10-16 2000-10-16
US60/240,610 2000-10-16

Publications (2)

Publication Number Publication Date
WO2002014555A2 WO2002014555A2 (en) 2002-02-21
WO2002014555A3 true WO2002014555A3 (en) 2003-02-27

Family

ID=26918967

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/025231 Ceased WO2002014555A2 (en) 2000-08-11 2001-08-10 Single-labeled oligonucleotide probes

Country Status (8)

Country Link
US (1) US6635427B2 (en)
EP (1) EP1307592B1 (en)
JP (1) JP5213297B2 (en)
AT (1) ATE332398T1 (en)
CA (1) CA2417986C (en)
DE (1) DE60121342T2 (en)
ES (1) ES2267803T3 (en)
WO (1) WO2002014555A2 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8592184B2 (en) 2008-03-19 2013-11-26 Roche Diagnostics Operations, Inc. Nucleic acid amplification in the presence of modified randomers

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US6635427B2 (en) 2003-10-21
JP5213297B2 (en) 2013-06-19
CA2417986C (en) 2013-11-26
US20030022177A1 (en) 2003-01-30
WO2002014555A2 (en) 2002-02-21
CA2417986A1 (en) 2002-02-21
JP2004506431A (en) 2004-03-04
ATE332398T1 (en) 2006-07-15
DE60121342T2 (en) 2007-06-28
EP1307592A2 (en) 2003-05-07
DE60121342D1 (en) 2006-08-17
ES2267803T3 (en) 2007-03-16
EP1307592B1 (en) 2006-07-05

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