WO2005017202A3 - Method and kit for identifying antibiotic-resistant microorganisms - Google Patents

Method and kit for identifying antibiotic-resistant microorganisms Download PDF

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Publication number
WO2005017202A3
WO2005017202A3 PCT/US2004/014690 US2004014690W WO2005017202A3 WO 2005017202 A3 WO2005017202 A3 WO 2005017202A3 US 2004014690 W US2004014690 W US 2004014690W WO 2005017202 A3 WO2005017202 A3 WO 2005017202A3
Authority
WO
WIPO (PCT)
Prior art keywords
kit
resistant microorganisms
identifying
identifying antibiotic
antibiotic
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2004/014690
Other languages
French (fr)
Other versions
WO2005017202A2 (en
Inventor
James J Hogan
Shannon K Kaplan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Gen Probe Inc
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Priority to AU2004265570A priority Critical patent/AU2004265570B2/en
Priority to JP2006514343A priority patent/JP4662578B2/en
Priority to EP20040775973 priority patent/EP1627082B1/en
Priority to CA2524194A priority patent/CA2524194C/en
Priority to DE200460022042 priority patent/DE602004022042D1/en
Publication of WO2005017202A2 publication Critical patent/WO2005017202A2/en
Publication of WO2005017202A3 publication Critical patent/WO2005017202A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)

Abstract

The invention provides a rapid sample-processing method for preparing hybridization reaction mixtures substantially depleted of RNA, and a method of identifying the methicillin-resistance status and vancomycin-resistance status of an organism.
PCT/US2004/014690 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms Ceased WO2005017202A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
AU2004265570A AU2004265570B2 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms
JP2006514343A JP4662578B2 (en) 2003-05-13 2004-05-11 Methods and kits for identifying antibiotic-resistant microorganisms
EP20040775973 EP1627082B1 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms
CA2524194A CA2524194C (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms
DE200460022042 DE602004022042D1 (en) 2003-05-13 2004-05-11 METHOD AND KIT FOR IDENTIFYING ANTIBIOTIC-ISISMIC MICRO-ORGANISMS

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US46999703P 2003-05-13 2003-05-13
US60/469,997 2003-05-13
US51610003P 2003-10-31 2003-10-31
US60/516,100 2003-10-31

Publications (2)

Publication Number Publication Date
WO2005017202A2 WO2005017202A2 (en) 2005-02-24
WO2005017202A3 true WO2005017202A3 (en) 2005-07-21

Family

ID=34197767

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2004/014690 Ceased WO2005017202A2 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Country Status (7)

Country Link
US (2) US7786289B2 (en)
EP (1) EP1627082B1 (en)
JP (2) JP4662578B2 (en)
AU (1) AU2004265570B2 (en)
CA (2) CA2875478A1 (en)
DE (1) DE602004022042D1 (en)
WO (1) WO2005017202A2 (en)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1674583A1 (en) * 2004-12-23 2006-06-28 Eppendorf Array Technologies SA Method and kit for the detection of a large number of genes related to antibiotic resistance in microorganisms
WO2006111028A1 (en) * 2005-04-21 2006-10-26 Uti Limited Partnership Pcr for mrsa sccmec typing
US20070059714A1 (en) * 2005-09-12 2007-03-15 Birgit Strommenger Detection of presence and antibiotic susceptibility of enterococci
KR100760525B1 (en) * 2006-04-13 2007-10-04 김재만 Unamplified Multiple Quantitative Detection Kit and Detection Method for Pathogenic Microorganisms
CA2651946A1 (en) * 2006-05-12 2007-11-22 Gen-Probe Incorporated Compositions and methods to detect enterococci nucleic acid
EP2183391A4 (en) 2007-07-31 2010-10-27 Quest Diagnostics Invest Inc Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples
CN102007222A (en) * 2007-08-13 2011-04-06 3M创新有限公司 Methods for detecting drug-resistant microbes
WO2010135480A1 (en) * 2009-05-20 2010-11-25 Advandx, Inc. Methods for whole-cell analysis of gram-positive bacteria
JP2011223940A (en) * 2010-04-21 2011-11-10 Asahi Breweries Ltd Pcr test method for eliminating false-negative, and primer used in the same
GB201120118D0 (en) * 2011-11-22 2012-01-04 Iti Scotland Ltd Detecting analytes
WO2013166460A1 (en) 2012-05-04 2013-11-07 The Regents Of The University Of California Antibiotic susceptibility testing using probes for preribosomal rna
KR102535489B1 (en) 2014-06-13 2023-05-22 큐-리네아 에이비 Method for detecting and characterising a microorganism
JP2017527288A (en) * 2014-09-04 2017-09-21 セラノス， インコーポレイテッドＴｈｅｒａｎｏｓ， Ｉｎｃ． Pathogen and antimicrobial resistance test
GB201507026D0 (en) 2015-04-24 2015-06-10 Linea Ab Q Medical sample transportation container
CN108291249A (en) * 2015-11-18 2018-07-17 国立研究开发法人海洋研究开发机构 The quantitative approach of target nucleic acid and kit for this method
GB2554767A (en) 2016-04-21 2018-04-11 Q Linea Ab Detecting and characterising a microorganism
US12344884B2 (en) 2018-06-28 2025-07-01 Gen-Probe Incorporated Sample preparation method and system
US20240158834A1 (en) * 2021-03-15 2024-05-16 Gen-Probe Incorporated Compositions and methods for biological sample processing
KR102714821B1 (en) * 2023-07-27 2024-10-14 드림디엑스 주식회사 Composition for detecting antibiotic-resistant bacteria and detection method using the same

Citations (4)

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Publication number Priority date Publication date Assignee Title
FR2736652A1 (en) * 1995-07-13 1997-01-17 Univ Bourgogne DNA encoding malolactic enzyme and/or malate permease enzyme
EP1136566A1 (en) * 2000-03-24 2001-09-26 Facultés Universitaires Notre-Dame de la Paix Method and kit for detection and/or quantification of homologus nucleotide sequences on arrays
US6406892B1 (en) * 2001-05-23 2002-06-18 Bio-Rad Laboratories, Inc. Acetate-free purification of plasmid DNA on hydroxyapatite
WO2003033724A2 (en) * 2001-10-15 2003-04-24 Molecular Staging, Inc. Nucleic acid amplification

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US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
US5283174A (en) * 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
CA2031498A1 (en) * 1989-05-23 1990-11-24 Raymond M. Nietupski Nucleic acid probes for the detection of staphylococcus aureus
US6582908B2 (en) * 1990-12-06 2003-06-24 Affymetrix, Inc. Oligonucleotides
JPH0549477A (en) 1991-08-05 1993-03-02 Wakunaga Pharmaceut Co Ltd Detection of bacteria of the genus staphylococcus
US5437976A (en) * 1991-08-08 1995-08-01 Arizona Board Of Regents, The University Of Arizona Multi-domain DNA ligands bound to a solid matrix for protein and nucleic acid affinity chromatography and processing of solid-phase DNA
FR2699537B1 (en) * 1992-12-18 1995-02-17 Pasteur Institut Protein conferring an inducible type resistance to glycopeptides, especially in gram-positive bacteria. Nucleotide sequences encoding this protein.
US5712095A (en) * 1994-06-16 1998-01-27 Becton Dickinson And Company Rapid and sensitive detection of antibiotic-resistant mycobacteria using oligonucleotide probes specific for ribosomal RNA precursors
US5702895A (en) * 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
JPH11513887A (en) * 1995-10-27 1999-11-30 ランバーグ，エリオット，アール． Methods and compositions for detecting specific nucleotide sequences
CA2276462C (en) * 1996-12-31 2007-06-12 High Throughput Genomics, Inc. Multiplexed molecular analysis system apparatus and method
US6503709B1 (en) * 1997-07-03 2003-01-07 Id Biomedical Corporation Methods for rapidly detecting methicillin resistant staphylococci
EP1017850A2 (en) 1997-09-26 2000-07-12 Universite Catholique De Louvain Genetic sequences, diagnostic and/or quantification methods for the identification of staphylococci strains
DE60028758T2 (en) * 1999-05-03 2007-05-24 Gen-Probe Inc., San Diego POLYNUCLEOTIDE DONSES FOR THE DETECTION AND QUANTIFICATION OF ACTINOMYCETES
US6821770B1 (en) * 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
EP1210365A2 (en) 1999-08-17 2002-06-05 Beth Israel Deaconess Medical Center, Inc. Methods and compositions for restoring antibiotic susceptibility in glycopeptide-resistant enterococcus
EP1246935B1 (en) 1999-09-28 2013-08-14 Geneohm Sciences Canada Inc. Highly conserved genes and their use to generate probes and primers for detection of microorganisms
US7205104B2 (en) * 2000-03-24 2007-04-17 Eppendorf Array Technologies Sa (Eat) Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays
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WO2003087297A2 (en) * 2001-08-08 2003-10-23 North Carolina State University Infectious disease microarray

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FR2736652A1 (en) * 1995-07-13 1997-01-17 Univ Bourgogne DNA encoding malolactic enzyme and/or malate permease enzyme
EP1136566A1 (en) * 2000-03-24 2001-09-26 Facultés Universitaires Notre-Dame de la Paix Method and kit for detection and/or quantification of homologus nucleotide sequences on arrays
US6406892B1 (en) * 2001-05-23 2002-06-18 Bio-Rad Laboratories, Inc. Acetate-free purification of plasmid DNA on hydroxyapatite
WO2003033724A2 (en) * 2001-10-15 2003-04-24 Molecular Staging, Inc. Nucleic acid amplification

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
ANTHONY R M ET AL: "Direct detection of Staphylococcus aureus mRNA using a flow through microarray", JOURNAL OF MICROBIOLOGICAL METHODS, ELSEVIER, AMSTERDAM,, NL, vol. 60, no. 1, January 2005 (2005-01-01), pages 47 - 54, XP004658669, ISSN: 0167-7012 *
HAMELS S ET AL: "CONSENSUS PCR AND MICROARRAY FOR DIAGNOSIS OF THE GENUS STAPHYLOCOCCUS, SPECIES, AND METHICILLIN RESISTANCE", BIOTECHNIQUES, EATON PUBLISHING, NATICK, US, vol. 31, no. 6, December 2001 (2001-12-01), pages 1364 - 1366,1368, XP001153876, ISSN: 0736-6205 *
ITO T ET AL: "Structural comparison of three types of staphylococcal cassette chromosome mec integrated in the chromosome in methicillin-resistant Staphylococcus aureus", ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON, DC, US, vol. 45, no. 5, May 2001 (2001-05-01), pages 1323 - 1336, XP002238384, ISSN: 0066-4804 *
PATEL R ET AL: "DNA SEQUENCE VARIATION WITHIN VANA, VANB, VANC-1, AND VANC-2/3 GENES OF CLINICAL ENTEROCOCCUS ISOLATES", ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON, DC, US, vol. 42, no. 1, January 1998 (1998-01-01), pages 202 - 205, XP000984072, ISSN: 0066-4804 *
SHI S-R ET AL: "DNA EXTRACTION FROM ARCHIVAL FORMALIN-FIXED, PARAFFIN-EMBEDDED TISSUE SECTIONS BASED ON THE ANTIGEN RETRIEVAL PRINCIPLE: HEATING UNDER THE INFLUENCE OF PH", JOURNAL OF HISTOCHEMISTRY AND CYTOCHEMISTRY, HISTOCHEMICAL SOCIETY, NEW YORK, NY, US, vol. 50, no. 8, August 2002 (2002-08-01), pages 1005 - 1011, XP009010320, ISSN: 0022-1554 *
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Also Published As

Publication number Publication date
WO2005017202A2 (en) 2005-02-24
JP2011062210A (en) 2011-03-31
US7786289B2 (en) 2010-08-31
JP5276648B2 (en) 2013-08-28
CA2524194A1 (en) 2005-02-24
US20040229268A1 (en) 2004-11-18
US20100216155A1 (en) 2010-08-26
EP1627082B1 (en) 2009-07-15
EP1627082A2 (en) 2006-02-22
JP4662578B2 (en) 2011-03-30
AU2004265570A1 (en) 2005-02-24
CA2875478A1 (en) 2005-02-24
CA2524194C (en) 2015-07-21
JP2006525809A (en) 2006-11-16
DE602004022042D1 (en) 2009-08-27
AU2004265570B2 (en) 2009-01-08
US9109261B2 (en) 2015-08-18

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