WO2005030983A3 - Amplification of polynucleotides by rolling circle amplification - Google Patents
Amplification of polynucleotides by rolling circle amplification Download PDFInfo
- Publication number
- WO2005030983A3 WO2005030983A3 PCT/US2004/031652 US2004031652W WO2005030983A3 WO 2005030983 A3 WO2005030983 A3 WO 2005030983A3 US 2004031652 W US2004031652 W US 2004031652W WO 2005030983 A3 WO2005030983 A3 WO 2005030983A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- nucleic acid
- amplification
- acid molecule
- rolling circle
- polynucleotides
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1096—Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Microbiology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Biomedical Technology (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Priority Applications (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CA002540087A CA2540087A1 (en) | 2003-09-26 | 2004-09-27 | Amplification of polynucleotides by rolling circle amplification |
| EP04785129A EP1664328A2 (en) | 2003-09-26 | 2004-09-27 | Amplification of polynucleotides by rolling circle amplification |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US50621803P | 2003-09-26 | 2003-09-26 | |
| US60/506,218 | 2003-09-26 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO2005030983A2 WO2005030983A2 (en) | 2005-04-07 |
| WO2005030983A3 true WO2005030983A3 (en) | 2009-04-16 |
Family
ID=34393125
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US2004/031652 Ceased WO2005030983A2 (en) | 2003-09-26 | 2004-09-27 | Amplification of polynucleotides by rolling circle amplification |
Country Status (5)
| Country | Link |
|---|---|
| US (4) | US20050069939A1 (en) |
| EP (1) | EP1664328A2 (en) |
| CN (1) | CN101415838A (en) |
| CA (1) | CA2540087A1 (en) |
| WO (1) | WO2005030983A2 (en) |
Families Citing this family (91)
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| US9487823B2 (en) * | 2002-12-20 | 2016-11-08 | Qiagen Gmbh | Nucleic acid amplification |
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| WO2006108423A2 (en) * | 2005-04-12 | 2006-10-19 | In Situ Rcp A/S Under Founding | Methods for production of oligonucleotides |
| US7989166B2 (en) * | 2005-04-12 | 2011-08-02 | In Situ Rcp A/S | Circle probes and their use in the identification of biomolecules |
| US7182495B2 (en) * | 2005-05-03 | 2007-02-27 | The Boeing Company | Light mixing and homogenizing apparatus and method |
| EP1762627A1 (en) | 2005-09-09 | 2007-03-14 | Qiagen GmbH | Method for the activation of a nucleic acid for performing a polymerase reaction |
| DE102006020885A1 (en) * | 2006-05-05 | 2007-11-08 | Qiagen Gmbh | Inserting a tag sequence into a nucleic acid comprises using an anchor oligonucleotide comprising a hybridizing anchor sequence and a nonhybridizing tag-template sequence |
| JP2008029333A (en) * | 2006-07-03 | 2008-02-14 | Fujifilm Corp | Primers used in new gene amplification methods |
| US7501254B2 (en) | 2006-07-20 | 2009-03-10 | Ghc Technologies, Inc. | Methods and compositions for amplification and capture of nucleic acid sequences |
| US7414793B2 (en) | 2006-07-21 | 2008-08-19 | The Boeing Company | White light splitting and homogenizing systems and methods |
| US7386214B1 (en) | 2007-02-01 | 2008-06-10 | The Boeing Company | Homogenizing optical beam combiner |
| US7603017B2 (en) * | 2007-02-01 | 2009-10-13 | The Boeing Company | Multi-color curved multi-light generating apparatus |
| US7443591B1 (en) * | 2007-02-01 | 2008-10-28 | The Boeing Company | Homogenizing optical beam combiner |
| US20080194416A1 (en) * | 2007-02-08 | 2008-08-14 | Sigma Aldrich | Detection of mature small rna molecules |
| WO2008112683A2 (en) * | 2007-03-13 | 2008-09-18 | President And Fellows Of Harvard College | Gene synthesis by circular assembly amplification |
| US9689031B2 (en) | 2007-07-14 | 2017-06-27 | Ionian Technologies, Inc. | Nicking and extension amplification reaction for the exponential amplification of nucleic acids |
| US20090061424A1 (en) * | 2007-08-30 | 2009-03-05 | Sigma-Aldrich Company | Universal ligation array for analyzing gene expression or genomic variations |
| KR101414713B1 (en) * | 2007-10-11 | 2014-07-03 | 삼성전자주식회사 | Methods for amplifying a target nucleic acid by rolling circle amplification in the presence of ligase and endonuclease |
| US8298768B2 (en) | 2007-11-29 | 2012-10-30 | Complete Genomics, Inc. | Efficient shotgun sequencing methods |
| US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
| EP3269824A1 (en) * | 2008-03-28 | 2018-01-17 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
| WO2010139767A1 (en) | 2009-06-04 | 2010-12-09 | Qiagen Gmbh | Amplification of complex nucleic acids |
| WO2011067133A2 (en) | 2009-12-04 | 2011-06-09 | Qiagen Gmbh | Selective enrichment of non-methylated nucleic acids |
| JP2012080871A (en) * | 2009-12-14 | 2012-04-26 | National Agriculture & Food Research Organization | Method for directly detecting rna |
| US8574832B2 (en) * | 2010-02-03 | 2013-11-05 | Massachusetts Institute Of Technology | Methods for preparing sequencing libraries |
| EP2418286A1 (en) * | 2010-08-10 | 2012-02-15 | QIAGEN GmbH | Improved method for isothermal amplification of nucleic acids |
| US10752944B2 (en) | 2011-09-06 | 2020-08-25 | Gen-Probe Incorporated | Circularized templates for sequencing |
| EP2753712B1 (en) | 2011-09-06 | 2017-03-22 | Gen-Probe Incorporated | Closed nucleic acid structures |
| US9352312B2 (en) | 2011-09-23 | 2016-05-31 | Alere Switzerland Gmbh | System and apparatus for reactions |
| CN102533771B (en) * | 2011-11-22 | 2015-05-20 | 华侨大学 | Anti-tumor angiogenesis aptamer molecule and preparation method thereof |
| US20130157259A1 (en) * | 2011-12-15 | 2013-06-20 | Samsung Electronics Co., Ltd. | Method of amplifying dna from rna in sample and use thereof |
| US9404147B2 (en) | 2011-12-19 | 2016-08-02 | Gen-Probe Incorporated | Closed nucleic acid structures |
| CN102559664A (en) * | 2012-02-22 | 2012-07-11 | 长春理工大学 | Method for cloning cDNA full length of bacterial gene |
| CN102586450B (en) * | 2012-03-06 | 2014-07-09 | 中国科学院上海微系统与信息技术研究所 | Rolling circle amplification-based colorimetric assay method for target nucleic acids or proteins |
| GB2539836B (en) | 2012-08-13 | 2017-03-29 | Univ California | Methods for detecting target nucleic acids in sample lysate droplets |
| CN103014148B (en) * | 2012-10-29 | 2014-03-12 | 中国科学院成都生物研究所 | Isothermal detection method of RNA (Ribonucleic Acid) |
| EP2920320B1 (en) * | 2012-11-14 | 2016-12-28 | Olink Bioscience AB | Rca reporter probes and their use in detecting nucleic acid molecules |
| EP2920324B1 (en) * | 2012-11-14 | 2017-12-27 | Olink Bioscience AB | Localised rca-based amplification method |
| WO2014160059A1 (en) * | 2013-03-13 | 2014-10-02 | Gen9, Inc. | Compositions and methods for synthesis of high fidelity oligonucleotides |
| US10450595B2 (en) | 2013-03-15 | 2019-10-22 | Theranos Ip Company, Llc | Nucleic acid amplification |
| CA2903874C (en) | 2013-03-15 | 2024-02-20 | Theranos, Inc. | Nucleic acid amplification |
| AU2014233145A1 (en) | 2013-03-15 | 2015-09-17 | Theranos Ip Company, Llc | Nucleic acid amplification |
| JP2016521120A (en) | 2013-03-15 | 2016-07-21 | セラノス, インコーポレイテッド | Nucleic acid amplification |
| US9765375B2 (en) * | 2013-06-28 | 2017-09-19 | General Electric Company | Methods for developing binding-elements and uses thereof |
| WO2015035260A1 (en) | 2013-09-06 | 2015-03-12 | Theranos, Inc. | Systems and methods for detecting infectious diseases |
| CN103865922A (en) * | 2014-03-25 | 2014-06-18 | 中国海洋大学 | Preparation method for RNA |
| WO2015200717A2 (en) | 2014-06-27 | 2015-12-30 | The Regents Of The University Of California | Pcr-activated sorting (pas) |
| JP6773651B2 (en) * | 2014-10-14 | 2020-10-21 | アボット・ラボラトリーズAbbott Laboratories | Sequence conversion and signal amplification DNA having a poly DNA spacer sequence and detection methods using them |
| WO2016065056A1 (en) | 2014-10-22 | 2016-04-28 | The Regents Of The University Of California | High definition microdroplet printer |
| WO2016090344A1 (en) * | 2014-12-05 | 2016-06-09 | Cofactor Genomics, Inc. | Amplification of nucleic acids |
| AU2016215304B2 (en) * | 2015-02-04 | 2022-01-27 | The Regents Of The University Of California | Sequencing of nucleic acids via barcoding in discrete entities |
| EP3298170B1 (en) * | 2015-05-21 | 2021-12-29 | Cofactor Genomics, Inc. | Methods for generating circular dna from circular rna |
| US9898579B2 (en) | 2015-06-16 | 2018-02-20 | Microsoft Technology Licensing, Llc | Relational DNA operations |
| CN105986030A (en) * | 2016-02-03 | 2016-10-05 | 广州市基准医疗有限责任公司 | Methylated DNA detection method |
| EP3420110B1 (en) | 2016-02-26 | 2021-09-22 | The Board of Trustees of the Leland Stanford Junior University | Multiplexed single molecule rna visualization with a two-probe proximity ligation system |
| CN107488656B (en) | 2016-06-13 | 2020-07-17 | 陆欣华 | Nucleic acid isothermal self-amplification method |
| WO2018015365A1 (en) * | 2016-07-18 | 2018-01-25 | Roche Sequencing Solutions, Inc. | Asymmetric templates and asymmetric method of nucleic acid sequencing |
| WO2018027048A1 (en) * | 2016-08-05 | 2018-02-08 | Bio-Rad Laboratories, Inc. | Second strand direct |
| US11142791B2 (en) | 2016-08-10 | 2021-10-12 | The Regents Of The University Of California | Combined multiple-displacement amplification and PCR in an emulsion microdroplet |
| GB201614023D0 (en) | 2016-08-16 | 2016-09-28 | Olink Bioscience Ab | Double-stranded circle probes |
| CN110462053A (en) | 2016-12-21 | 2019-11-15 | 加利福尼亚大学董事会 | Single-cell genome sequencing using hydrogel-based droplets |
| CN111742056B (en) * | 2017-06-23 | 2023-09-01 | 荣研化学株式会社 | Nucleic acid detection method, primer for nucleic acid detection, and kit for nucleic acid detection |
| US10350307B2 (en) * | 2017-09-18 | 2019-07-16 | General Electric Company | In vivo RNA or protein expression using double-stranded concatemeric DNA including phosphorothioated nucleotides |
| CN109593783B (en) * | 2017-09-30 | 2024-05-24 | 中国科学院动物研究所 | A method for producing circular nucleic acid molecules in vitro |
| CA3078158A1 (en) * | 2017-10-06 | 2019-04-11 | Cartana Ab | Rna templated ligation |
| US10501739B2 (en) | 2017-10-18 | 2019-12-10 | Mission Bio, Inc. | Method, systems and apparatus for single cell analysis |
| AU2018371063C1 (en) * | 2017-11-21 | 2025-04-17 | 4basebio Sl | Methods and kits for amplification of double stranded DNA |
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| US12359253B2 (en) | 2018-04-09 | 2025-07-15 | The Board Of Trustees Of The Leland Stanford Junior University | Method of in situ gene sequencing |
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| CN111876472B (en) * | 2020-06-17 | 2023-12-01 | 江门市灿明生物科技有限公司 | Method for detecting trace nucleic acid in multiple mixed nucleic acids |
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| WO2022261874A1 (en) * | 2021-06-16 | 2022-12-22 | 深圳华大生命科学研究院 | Method for obtaining double-stranded sequence by single-stranded rolling circle amplification |
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Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4555486A (en) * | 1980-12-08 | 1985-11-26 | Cetus Corporation | Method for using an amino-terminus DNA sequence to synthesize a specific double-stranded DNA |
| US6465219B1 (en) * | 2000-08-07 | 2002-10-15 | Genemed Biotechnologies, Inc. | Polynucleotide pools enriched in either high-abundance or low-abundance sequences |
| US6498023B1 (en) * | 1999-12-02 | 2002-12-24 | Molecular Staging, Inc. | Generation of single-strand circular DNA from linear self-annealing segments |
Family Cites Families (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5854033A (en) * | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
| CA2342838A1 (en) * | 1998-09-15 | 2000-03-23 | Yale University | Molecular cloning using rolling circle amplification |
| US6235502B1 (en) * | 1998-09-18 | 2001-05-22 | Molecular Staging Inc. | Methods for selectively isolating DNA using rolling circle amplification |
| US20040171047A1 (en) * | 2002-05-22 | 2004-09-02 | Dahl Gary A. | Target-dependent transcription |
-
2004
- 2004-09-27 EP EP04785129A patent/EP1664328A2/en not_active Withdrawn
- 2004-09-27 CN CNA2004800276961A patent/CN101415838A/en active Pending
- 2004-09-27 US US10/952,076 patent/US20050069939A1/en not_active Abandoned
- 2004-09-27 US US10/952,026 patent/US20050069938A1/en not_active Abandoned
- 2004-09-27 US US10/952,020 patent/US20050074804A1/en not_active Abandoned
- 2004-09-27 WO PCT/US2004/031652 patent/WO2005030983A2/en not_active Ceased
- 2004-09-27 US US10/952,046 patent/US20050112639A1/en not_active Abandoned
- 2004-09-27 CA CA002540087A patent/CA2540087A1/en not_active Abandoned
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4555486A (en) * | 1980-12-08 | 1985-11-26 | Cetus Corporation | Method for using an amino-terminus DNA sequence to synthesize a specific double-stranded DNA |
| US6498023B1 (en) * | 1999-12-02 | 2002-12-24 | Molecular Staging, Inc. | Generation of single-strand circular DNA from linear self-annealing segments |
| US6465219B1 (en) * | 2000-08-07 | 2002-10-15 | Genemed Biotechnologies, Inc. | Polynucleotide pools enriched in either high-abundance or low-abundance sequences |
Also Published As
| Publication number | Publication date |
|---|---|
| US20050069938A1 (en) | 2005-03-31 |
| WO2005030983A2 (en) | 2005-04-07 |
| US20050074804A1 (en) | 2005-04-07 |
| US20050112639A1 (en) | 2005-05-26 |
| US20050069939A1 (en) | 2005-03-31 |
| CA2540087A1 (en) | 2005-04-07 |
| EP1664328A2 (en) | 2006-06-07 |
| CN101415838A (en) | 2009-04-22 |
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