WO2008046922A3 - Methodology for anaysis of sequence variations within the hcv ns5b genomic region - Google Patents

Methodology for anaysis of sequence variations within the hcv ns5b genomic region Download PDF

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Publication number
WO2008046922A3
WO2008046922A3 PCT/EP2007/061241 EP2007061241W WO2008046922A3 WO 2008046922 A3 WO2008046922 A3 WO 2008046922A3 EP 2007061241 W EP2007061241 W EP 2007061241W WO 2008046922 A3 WO2008046922 A3 WO 2008046922A3
Authority
WO
WIPO (PCT)
Prior art keywords
sequence variations
anaysis
methodology
hcv ns5b
genomic region
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/EP2007/061241
Other languages
French (fr)
Other versions
WO2008046922A2 (en
Inventor
Erwin Sablon
Evelien Libbrecht
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fujirebio Europe NV SA
Original Assignee
Innogenetics NV SA
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Innogenetics NV SA filed Critical Innogenetics NV SA
Priority to US12/311,932 priority Critical patent/US20090325145A1/en
Priority to EP07821605A priority patent/EP2121990A2/en
Publication of WO2008046922A2 publication Critical patent/WO2008046922A2/en
Publication of WO2008046922A3 publication Critical patent/WO2008046922A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C12Q1/706—Specific hybridization probes for hepatitis
    • C12Q1/707—Specific hybridization probes for hepatitis non-A, non-B Hepatitis, excluding hepatitis D
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Communicable Diseases (AREA)
  • Immunology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Virology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The current invention relates to a standardized method for amplification of an HCV NS5B nucleic acid fragment of any one of HCV genotypes 1 to 6 as a tool for analysis of sequence variations that may be correlated with HCV drug resistance.
PCT/EP2007/061241 2006-10-20 2007-10-19 Methodology for anaysis of sequence variations within the hcv ns5b genomic region Ceased WO2008046922A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
US12/311,932 US20090325145A1 (en) 2006-10-20 2007-10-19 Methodology for analysis of sequence variations within the hcv ns5b genomic region
EP07821605A EP2121990A2 (en) 2006-10-20 2007-10-19 Methodology for anaysis of sequence variations within the hcv ns5b genomic region

Applications Claiming Priority (20)

Application Number Priority Date Filing Date Title
US85301506P 2006-10-20 2006-10-20
US85298206P 2006-10-20 2006-10-20
US85298306P 2006-10-20 2006-10-20
US85298406P 2006-10-20 2006-10-20
US85301606P 2006-10-20 2006-10-20
EP06122670 2006-10-20
EP06122675 2006-10-20
US60/852,984 2006-10-20
EP06122668 2006-10-20
US60/853,015 2006-10-20
EP06122678 2006-10-20
US60/853,016 2006-10-20
EP06122678.3 2006-10-20
EP06122673 2006-10-20
US60/852,983 2006-10-20
EP06122668.4 2006-10-20
EP06122675.9 2006-10-20
EP06122670.0 2006-10-20
US60/852,982 2006-10-20
EP06122673.4 2006-10-20

Publications (2)

Publication Number Publication Date
WO2008046922A2 WO2008046922A2 (en) 2008-04-24
WO2008046922A3 true WO2008046922A3 (en) 2008-06-12

Family

ID=38863097

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2007/061241 Ceased WO2008046922A2 (en) 2006-10-20 2007-10-19 Methodology for anaysis of sequence variations within the hcv ns5b genomic region

Country Status (2)

Country Link
EP (1) EP2121990A2 (en)
WO (1) WO2008046922A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2342363B1 (en) * 2008-10-06 2015-06-10 Janssen Diagnostics BVBA Method for determining drug resistance mutations in any of the non-structural protein regions ns3 to ns5b of hepatitis c virus (hcv) for genotypes 1 to 6
CN113151595B (en) * 2021-03-31 2024-02-06 广州金域医学检验中心有限公司 Amplification primer for detecting HCV6 type drug-resistant mutant gene, detection method and application

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994025601A2 (en) * 1993-04-27 1994-11-10 N.V. Innogenetics S.A. New sequences of hepatitis c virus genotypes and their use as therapeutic and diagnostic agents

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994025601A2 (en) * 1993-04-27 1994-11-10 N.V. Innogenetics S.A. New sequences of hepatitis c virus genotypes and their use as therapeutic and diagnostic agents

Non-Patent Citations (8)

* Cited by examiner, † Cited by third party
Title
CHAYAMA KAZUAKI ET AL: "Genotypic subtyping of hepatitis C virus", JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, vol. 8, no. 2, 1993, pages 150 - 156, XP009080652, ISSN: 0815-9319 *
CHAYAMA KAZUAKI: "Genotyping hepatitis C virus by type-specific primers for PCR based on NS5 region", 1998, METHODS IN MOLECULAR MEDICINE, HUMANA PRESS, TOTOWA, NJ, US, PAGE(S) 165-173, ISSN: 1543-1894, XP009094859 *
DATABASE EMBL [online] 15 December 2005 (2005-12-15), "Sequence 84 from Patent EP1602736.", XP002426573, retrieved from EBI accession no. EMBL:CS227621 Database accession no. CS227621 *
MAY WANG Q ET AL: "Expression and purification of untagged full-length HCV NS5B RNA-dependent RNA polymerase", PROTEIN EXPRESSION AND PURIFICATION, ACADEMIC PRESS, SAN DIEGO, CA, US, vol. 35, no. 2, June 2004 (2004-06-01), pages 304 - 312, XP004506567, ISSN: 1046-5928 *
OHNO T ET AL: "NEW HEPATITIS C VIRUS (HCV) GENOTYPING SYSTEM THAT ALLOWS FOR IDENTIFICATION OF HCV GENOTYPES 1A, 1B, 2A, 2B, 3A, 3B, 4, 5A, AND 6A", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 35, no. 1, 1997, pages 201 - 207, XP000911892, ISSN: 0095-1137 *
SANDRES-SAUNE K ET AL: "Determining hepatitis C genotype by analyzing the sequence of the NS5b region.", JOURNAL OF VIROLOGICAL METHODS, vol. 109, no. 2, May 2003 (2003-05-01), pages 187 - 193, XP002425272, ISSN: 0166-0934 *
SIMMONDS PETER ET AL: "Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes", HEPATOLOGY, vol. 42, no. 4, October 2005 (2005-10-01), pages 962 - 973, XP002423614, ISSN: 0270-9139 *
TOMEI LICIA ET AL: "HCV antiviral resistance: the impact of in vitro studies on the development of antiviral agents targeting the viral NS5B polymerase.", ANTIVIRAL CHEMISTRY & CHEMOTHERAPY 2005, vol. 16, no. 4, 2005, pages 225 - 245, XP009080813, ISSN: 0956-3202 *

Also Published As

Publication number Publication date
WO2008046922A2 (en) 2008-04-24
EP2121990A2 (en) 2009-11-25

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