WO2009031054A3 - Methods and compositions for isolating nucleic acid sequence variants - Google Patents
Methods and compositions for isolating nucleic acid sequence variants Download PDFInfo
- Publication number
- WO2009031054A3 WO2009031054A3 PCT/IB2008/003320 IB2008003320W WO2009031054A3 WO 2009031054 A3 WO2009031054 A3 WO 2009031054A3 IB 2008003320 W IB2008003320 W IB 2008003320W WO 2009031054 A3 WO2009031054 A3 WO 2009031054A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- nucleic acid
- polymerization
- analyzed
- methods
- iterative
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The invention is drawn to isolating sequence variants of a genetic locus of interest using a modified iterative primer extension method. The nucleic acids analyzed are generally single stranded and have a reference sequence which is used as a basis for performing iterative single nucleotide extension reactions from a hybridized polymerization primer. The iterative polymerization reactions are configured such that polymerization of the strand will continue if the sequence of the nucleic acid being analyzed matches the reference sequence, whereas polymerization will be terminated if the nucleic acid being analyzed does not match the reference sequence. Nucleic acid strands that have mutations can be isolated using a variety of methods and sequenced to determine the precise identity of the mutation/polymorphism. By performing the method on both strands of the nucleic acid being analyzed, virtually all possible mutations can be identified.
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP08829556A EP2171097A2 (en) | 2007-06-29 | 2008-06-27 | Methods and compositions for isolating nucleic acid sequence variants |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US94710907P | 2007-06-29 | 2007-06-29 | |
| US60/947,109 | 2007-06-29 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO2009031054A2 WO2009031054A2 (en) | 2009-03-12 |
| WO2009031054A3 true WO2009031054A3 (en) | 2009-12-17 |
Family
ID=40161018
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/IB2008/003320 Ceased WO2009031054A2 (en) | 2007-06-29 | 2008-06-27 | Methods and compositions for isolating nucleic acid sequence variants |
Country Status (3)
| Country | Link |
|---|---|
| US (2) | US7635566B2 (en) |
| EP (2) | EP2171097A2 (en) |
| WO (1) | WO2009031054A2 (en) |
Families Citing this family (140)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20100130369A1 (en) * | 2007-04-23 | 2010-05-27 | Advanced Liquid Logic, Inc. | Bead-Based Multiplexed Analytical Methods and Instrumentation |
| EP2171097A2 (en) * | 2007-06-29 | 2010-04-07 | Population Genetics Technologies LTD. | Methods and compositions for isolating nucleic acid sequence variants |
| US8455190B2 (en) * | 2007-08-01 | 2013-06-04 | Dana-Farber Cancer Institute, Inc. | Enrichment of a target sequence |
| GB0724904D0 (en) | 2007-12-21 | 2008-01-30 | Nortel Networks Ltd | Improved soft handover for cellular radio systems |
| EP4450642A3 (en) | 2008-01-17 | 2025-01-08 | Sequenom, Inc. | Single molecule nucleic acid sequence analysis processes and compositions |
| US9085798B2 (en) | 2009-04-30 | 2015-07-21 | Prognosys Biosciences, Inc. | Nucleic acid constructs and methods of use |
| WO2010133972A1 (en) | 2009-05-22 | 2010-11-25 | Population Genetics Technologies Ltd | Sorting asymmetrically tagged nucleic acids by selective primer extension |
| US8975019B2 (en) * | 2009-10-19 | 2015-03-10 | University Of Massachusetts | Deducing exon connectivity by RNA-templated DNA ligation/sequencing |
| US20120245041A1 (en) * | 2009-11-04 | 2012-09-27 | Sydney Brenner | Base-by-base mutation screening |
| US9315857B2 (en) | 2009-12-15 | 2016-04-19 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse label-tags |
| US8835358B2 (en) | 2009-12-15 | 2014-09-16 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse labels |
| KR101550489B1 (en) | 2010-03-08 | 2015-09-07 | 다나-파버 캔서 인스티튜트 인크. | Full cold-pcr enrichment with reference blocking sequence |
| KR101866401B1 (en) | 2010-04-05 | 2018-06-11 | 프로그노시스 바이오사이언스, 인코포레이티드 | Spatially encoded biological assays |
| US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
| US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
| EP3333269B1 (en) | 2011-03-31 | 2021-05-05 | Dana-Farber Cancer Institute, Inc. | Methods to enable multiplex cold-pcr |
| US20120258871A1 (en) | 2011-04-08 | 2012-10-11 | Prognosys Biosciences, Inc. | Peptide constructs and assay systems |
| GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
| WO2012158603A2 (en) | 2011-05-13 | 2012-11-22 | Bioo Scientific Corporation | Pooled adapter strategy for reducing bias in small rna characterization |
| US9428799B2 (en) * | 2011-07-25 | 2016-08-30 | Bioinventors & Entrepreneurs Network Llc | Method for determining an allele profile of nucleic acid |
| US8932989B2 (en) | 2011-07-25 | 2015-01-13 | Bioinventors & Entrepreneurs Network, Llc | Sieving of nucleic acid samples |
| US9133567B2 (en) * | 2011-07-25 | 2015-09-15 | Bioinventors & Entrepreneurs Network Llc | Method for determining an attribute profile of biological samples |
| WO2013130512A2 (en) | 2012-02-27 | 2013-09-06 | The University Of North Carolina At Chapel Hill | Methods and uses for molecular tags |
| EP3321378B1 (en) | 2012-02-27 | 2021-11-10 | Becton, Dickinson and Company | Compositions for molecular counting |
| WO2013145757A1 (en) * | 2012-03-29 | 2013-10-03 | 旭化成エレクトロニクス株式会社 | Light receiving device |
| EP3901280B1 (en) | 2012-10-17 | 2025-03-12 | 10x Genomics Sweden AB | Methods and product for optimising localised or spatial detection of gene expression in a tissue sample |
| CA2907050C (en) | 2013-03-15 | 2023-09-26 | Prognosys Biosciences, Inc. | Methods for detecting peptide/mhc/tcr binding |
| CN111500680B (en) | 2013-06-25 | 2024-04-16 | 普罗格诺西斯生物科学公司 | Method and system for detecting the spatial distribution of biological targets in a sample |
| US10913977B2 (en) | 2013-07-24 | 2021-02-09 | Dana-Farber Cancer Institute, Inc. | Methods and compositions to enable enrichment of minor DNA alleles by limiting denaturation time in PCR or simply enable enrichment of minor DNA alleles by limiting the denaturation time in PCR |
| CN105705659B (en) | 2013-08-28 | 2019-11-29 | 贝克顿迪金森公司 | Massively parallel single-cell analysis |
| CN105745528A (en) | 2013-10-07 | 2016-07-06 | 赛卢拉研究公司 | Methods and systems for digitally counting features on arrays |
| US10288608B2 (en) | 2013-11-08 | 2019-05-14 | Prognosys Biosciences, Inc. | Polynucleotide conjugates and methods for analyte detection |
| EP3259371B1 (en) | 2015-02-19 | 2020-09-02 | Becton, Dickinson and Company | High-throughput single-cell analysis combining proteomic and genomic information |
| WO2016138496A1 (en) | 2015-02-27 | 2016-09-01 | Cellular Research, Inc. | Spatially addressable molecular barcoding |
| CN107406888A (en) | 2015-03-30 | 2017-11-28 | 赛卢拉研究公司 | Methods and compositions for combining barcoding |
| EP4321627A3 (en) | 2015-04-10 | 2024-04-17 | 10x Genomics Sweden AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
| EP3286326B1 (en) | 2015-04-23 | 2025-01-22 | Becton, Dickinson and Company | Method for whole transcriptome amplification |
| US11124823B2 (en) | 2015-06-01 | 2021-09-21 | Becton, Dickinson And Company | Methods for RNA quantification |
| WO2017044574A1 (en) | 2015-09-11 | 2017-03-16 | Cellular Research, Inc. | Methods and compositions for nucleic acid library normalization |
| EP3452614B1 (en) | 2016-05-02 | 2023-06-28 | Becton, Dickinson and Company | Accurate molecular barcoding |
| US10301677B2 (en) | 2016-05-25 | 2019-05-28 | Cellular Research, Inc. | Normalization of nucleic acid libraries |
| WO2017205691A1 (en) | 2016-05-26 | 2017-11-30 | Cellular Research, Inc. | Molecular label counting adjustment methods |
| US10640763B2 (en) | 2016-05-31 | 2020-05-05 | Cellular Research, Inc. | Molecular indexing of internal sequences |
| US10202641B2 (en) | 2016-05-31 | 2019-02-12 | Cellular Research, Inc. | Error correction in amplification of samples |
| IL265478B2 (en) | 2016-09-26 | 2024-10-01 | Becton Dickinson Co | Measurement of protein expression using reagents with barcoded oligonucleotide sequences |
| CN109906274B (en) | 2016-11-08 | 2023-08-25 | 贝克顿迪金森公司 | Methods for cell marker classification |
| AU2017359048B2 (en) | 2016-11-08 | 2022-07-21 | Becton, Dickinson And Company | Methods for expression profile classification |
| WO2018111835A1 (en) | 2016-12-12 | 2018-06-21 | Dana-Farber Cancer Institute, Inc. | Compositions and methods for molecular barcoding of dna molecules prior to mutation enrichment and/or mutation detection |
| WO2018132610A1 (en) | 2017-01-13 | 2018-07-19 | Cellular Research, Inc. | Hydrophilic coating of fluidic channels |
| US11319583B2 (en) | 2017-02-01 | 2022-05-03 | Becton, Dickinson And Company | Selective amplification using blocking oligonucleotides |
| JP7536450B2 (en) | 2017-06-05 | 2024-08-20 | ベクトン・ディキンソン・アンド・カンパニー | Single cell sample indexing |
| CN111094586A (en) | 2017-07-18 | 2020-05-01 | 加利福尼亚太平洋生物科学股份有限公司 | Methods and compositions for isolating asymmetric nucleic acid complexes |
| US11174511B2 (en) | 2017-07-24 | 2021-11-16 | Dana-Farber Cancer Institute, Inc. | Methods and compositions for selecting and amplifying DNA targets in a single reaction mixture |
| CN111492068B (en) | 2017-12-19 | 2025-03-21 | 贝克顿迪金森公司 | Oligonucleotide-associated particles |
| EP3735281B1 (en) | 2018-01-05 | 2024-11-27 | Path Ex, Inc. | Device for the capture and removal of disease material from fluids |
| CA3097976A1 (en) | 2018-05-03 | 2019-11-07 | Becton, Dickinson And Company | High throughput multiomics sample analysis |
| EP3788170B1 (en) | 2018-05-03 | 2025-01-01 | Becton, Dickinson and Company | Molecular barcoding on opposite transcript ends |
| US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
| EP3861134B1 (en) | 2018-10-01 | 2024-09-04 | Becton, Dickinson and Company | Determining 5' transcript sequences |
| EP3870969A4 (en) * | 2018-10-24 | 2022-07-27 | Path Ex, Inc. | Method for the capture and isolation of disease material from flowing matter |
| EP3877520B1 (en) | 2018-11-08 | 2025-03-19 | Becton, Dickson And Company | Whole transcriptome analysis of single cells using random priming |
| EP3894585A2 (en) | 2018-12-10 | 2021-10-20 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| EP3894552B1 (en) | 2018-12-13 | 2026-01-28 | Becton, Dickinson and Company | Selective extension in single cell whole transcriptome analysis |
| US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| WO2020150356A1 (en) | 2019-01-16 | 2020-07-23 | Becton, Dickinson And Company | Polymerase chain reaction normalization through primer titration |
| EP3914728B1 (en) | 2019-01-23 | 2023-04-05 | Becton, Dickinson and Company | Oligonucleotides associated with antibodies |
| CN113454234B (en) | 2019-02-14 | 2025-03-18 | 贝克顿迪金森公司 | Heterozygote targeted and whole transcriptome amplification |
| US11965208B2 (en) | 2019-04-19 | 2024-04-23 | Becton, Dickinson And Company | Methods of associating phenotypical data and single cell sequencing data |
| EP3976820A1 (en) | 2019-05-30 | 2022-04-06 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
| WO2021016239A1 (en) | 2019-07-22 | 2021-01-28 | Becton, Dickinson And Company | Single cell chromatin immunoprecipitation sequencing assay |
| WO2021091611A1 (en) | 2019-11-08 | 2021-05-14 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
| EP4055160B1 (en) | 2019-11-08 | 2024-04-10 | Becton Dickinson and Company | Using random priming to obtain full-length v(d)j information for immune repertoire sequencing |
| EP4025711A2 (en) | 2019-11-08 | 2022-07-13 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
| EP4752521A3 (en) | 2019-12-23 | 2026-08-12 | 10X Genomics, Inc. | Reversible fixing reagents and methods of use thereof |
| CN121022991A (en) | 2019-12-23 | 2025-11-28 | 10X基因组学有限公司 | Spatial analysis using RNA templated ligation |
| EP4081656A1 (en) | 2019-12-23 | 2022-11-02 | 10X Genomics, Inc. | Compositions and methods for using fixed biological samples in partition-based assays |
| CN115244184A (en) | 2020-01-13 | 2022-10-25 | 贝克顿迪金森公司 | Methods and compositions for quantification of protein and RNA |
| US12365942B2 (en) | 2020-01-13 | 2025-07-22 | 10X Genomics, Inc. | Methods of decreasing background on a spatial array |
| CN115279919A (en) | 2020-01-13 | 2022-11-01 | 贝克顿迪金森公司 | Cell capture using DU-containing oligonucleotides |
| US12405264B2 (en) | 2020-01-17 | 2025-09-02 | 10X Genomics, Inc. | Electrophoretic system and method for analyte capture |
| US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
| US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
| US20210230681A1 (en) | 2020-01-24 | 2021-07-29 | 10X Genomics, Inc. | Methods for spatial analysis using proximity ligation |
| WO2021155057A1 (en) | 2020-01-29 | 2021-08-05 | Becton, Dickinson And Company | Barcoded wells for spatial mapping of single cells through sequencing |
| US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
| US12076701B2 (en) | 2020-01-31 | 2024-09-03 | 10X Genomics, Inc. | Capturing oligonucleotides in spatial transcriptomics |
| US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
| US12110541B2 (en) | 2020-02-03 | 2024-10-08 | 10X Genomics, Inc. | Methods for preparing high-resolution spatial arrays |
| US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
| US12129516B2 (en) | 2020-02-07 | 2024-10-29 | 10X Genomics, Inc. | Quantitative and automated permeabilization performance evaluation for spatial transcriptomics |
| US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
| US12281357B1 (en) | 2020-02-14 | 2025-04-22 | 10X Genomics, Inc. | In situ spatial barcoding |
| US12399123B1 (en) | 2020-02-14 | 2025-08-26 | 10X Genomics, Inc. | Spatial targeting of analytes |
| CN116157533A (en) | 2020-02-21 | 2023-05-23 | 10X基因组学有限公司 | Capture Genetic Targets Using Hybridization |
| US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
| US12153043B2 (en) | 2020-02-25 | 2024-11-26 | Becton, Dickinson And Company | Bi-specific probes to enable the use of single-cell samples as single color compensation control |
| US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
| US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
| EP4139485B1 (en) | 2020-04-22 | 2023-09-06 | 10X Genomics, Inc. | Methods for spatial analysis using targeted rna depletion |
| WO2021231779A1 (en) | 2020-05-14 | 2021-11-18 | Becton, Dickinson And Company | Primers for immune repertoire profiling |
| US12416603B2 (en) | 2020-05-19 | 2025-09-16 | 10X Genomics, Inc. | Electrophoresis cassettes and instrumentation |
| EP4153775B1 (en) | 2020-05-22 | 2024-07-24 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
| AU2021275906A1 (en) | 2020-05-22 | 2022-12-22 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
| WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
| US12265079B1 (en) | 2020-06-02 | 2025-04-01 | 10X Genomics, Inc. | Systems and methods for detecting analytes from captured single biological particles |
| CN115803445A (en) | 2020-06-02 | 2023-03-14 | 贝克顿迪金森公司 | Oligonucleotides and beads for 5-prime gene expression assays |
| EP4025692A2 (en) | 2020-06-02 | 2022-07-13 | 10X Genomics, Inc. | Nucleic acid library methods |
| EP4600376A3 (en) | 2020-06-02 | 2025-10-22 | 10X Genomics, Inc. | Spatial transcriptomics for antigen-receptors |
| US12031177B1 (en) | 2020-06-04 | 2024-07-09 | 10X Genomics, Inc. | Methods of enhancing spatial resolution of transcripts |
| EP4421186B1 (en) | 2020-06-08 | 2025-08-13 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
| EP4164796A4 (en) | 2020-06-10 | 2024-03-06 | 10x Genomics, Inc. | LIQUID DISPENSING METHOD |
| EP4446430A3 (en) | 2020-06-10 | 2024-12-18 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
| US12435363B1 (en) | 2020-06-10 | 2025-10-07 | 10X Genomics, Inc. | Materials and methods for spatial transcriptomics |
| EP4450639B1 (en) | 2020-06-25 | 2025-10-15 | 10X Genomics, Inc. | Spatial analysis of dna methylation |
| US12209280B1 (en) | 2020-07-06 | 2025-01-28 | 10X Genomics, Inc. | Methods of identifying abundance and location of an analyte in a biological sample using second strand synthesis |
| US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
| US11981960B1 (en) | 2020-07-06 | 2024-05-14 | 10X Genomics, Inc. | Spatial analysis utilizing degradable hydrogels |
| US11932901B2 (en) | 2020-07-13 | 2024-03-19 | Becton, Dickinson And Company | Target enrichment using nucleic acid probes for scRNAseq |
| WO2022026909A1 (en) | 2020-07-31 | 2022-02-03 | Becton, Dickinson And Company | Single cell assay for transposase-accessible chromatin |
| US12553898B1 (en) | 2020-08-10 | 2026-02-17 | 10X Genomics, Inc. | Fluorescent hybridization of antibody-oligonucleotide for multiplexing and signal amplification |
| US11981958B1 (en) | 2020-08-20 | 2024-05-14 | 10X Genomics, Inc. | Methods for spatial analysis using DNA capture |
| CN116194590A (en) | 2020-09-18 | 2023-05-30 | 10X基因组学有限公司 | Sample processing equipment and image registration method |
| US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
| US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
| WO2022109343A1 (en) | 2020-11-20 | 2022-05-27 | Becton, Dickinson And Company | Profiling of highly expressed and lowly expressed proteins |
| CN116685850A (en) | 2020-12-15 | 2023-09-01 | 贝克顿迪金森公司 | Single-cell secretome analysis |
| WO2022140028A1 (en) | 2020-12-21 | 2022-06-30 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
| ES2989523T3 (en) | 2021-02-19 | 2024-11-26 | 10X Genomics Inc | Method of using a modular test support device |
| EP4524261B1 (en) | 2021-03-18 | 2026-07-22 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
| EP4305196B1 (en) | 2021-04-14 | 2025-04-02 | 10X Genomics, Inc. | Methods of measuring mislocalization of an analyte |
| EP4320271B1 (en) | 2021-05-06 | 2025-03-19 | 10X Genomics, Inc. | Methods for increasing resolution of spatial analysis |
| ES3030033T3 (en) | 2021-06-03 | 2025-06-26 | 10X Genomics Inc | Methods, compositions, kits, and systems for enhancing analyte capture for spatial analysis |
| US12553805B2 (en) | 2021-08-02 | 2026-02-17 | 10X Genomics, Inc. | Methods of preserving a biological sample |
| WO2023034489A1 (en) | 2021-09-01 | 2023-03-09 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
| EP4419707A1 (en) | 2021-11-10 | 2024-08-28 | 10X Genomics, Inc. | Methods, compositions, and kits for determining the location of an analyte in a biological sample |
| EP4305195A2 (en) | 2021-12-01 | 2024-01-17 | 10X Genomics, Inc. | Methods, compositions, and systems for improved in situ detection of analytes and spatial analysis |
| EP4441711A1 (en) | 2021-12-20 | 2024-10-09 | 10X Genomics, Inc. | Self-test for pathology/histology slide imaging device |
| US12637706B2 (en) | 2022-03-23 | 2026-05-26 | 10X Genomics, Inc. | Methods and compositions related to microsphere surface gelation |
| EP4685239A1 (en) | 2022-11-09 | 2026-01-28 | 10X Genomics, Inc. | Methods, compositions, and kits for determining the location of multiple analytes in a biological sample |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1999009211A1 (en) * | 1997-08-13 | 1999-02-25 | Tepnel Medical Limited | Amplification of nucleic acids |
| EP0969103A2 (en) * | 1993-06-22 | 2000-01-05 | Pharmacia Biotech AB | Parallel primer extension approach to nucleic acid sequence analysis |
| WO2005111244A2 (en) * | 2004-05-10 | 2005-11-24 | Exact Sciences Corporation | Methods for detecting a mutant nucleic acid |
| EP1693469A2 (en) * | 1995-04-07 | 2006-08-23 | Oxford Gene Technology Ip Limited | Detecting DNA sequence variations |
Family Cites Families (66)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4883750A (en) | 1984-12-13 | 1989-11-28 | Applied Biosystems, Inc. | Detection of specific sequences in nucleic acids |
| US4683202A (en) | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US4965188A (en) | 1986-08-22 | 1990-10-23 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme |
| US4818680A (en) * | 1985-12-18 | 1989-04-04 | Mary Collins | Method and kit involving displacement and rehybridization of labeled polynucleotide |
| US4800159A (en) | 1986-02-07 | 1989-01-24 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences |
| US5168038A (en) | 1988-06-17 | 1992-12-01 | The Board Of Trustees Of The Leland Stanford Junior University | In situ transcription in cells and tissues |
| CA2020958C (en) | 1989-07-11 | 2005-01-11 | Daniel L. Kacian | Nucleic acid sequence amplification methods |
| US5210015A (en) | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| JP3080178B2 (en) | 1991-02-18 | 2000-08-21 | 東洋紡績株式会社 | Method for amplifying nucleic acid sequence and reagent kit therefor |
| US5426180A (en) | 1991-03-27 | 1995-06-20 | Research Corporation Technologies, Inc. | Methods of making single-stranded circular oligonucleotides |
| EP1382386A3 (en) * | 1992-02-19 | 2004-12-01 | The Public Health Research Institute Of The City Of New York, Inc. | Novel oligonucleotide arrays and their use for sorting, isolating, sequencing, and manipulating nucleic acids |
| US5593826A (en) | 1993-03-22 | 1997-01-14 | Perkin-Elmer Corporation, Applied Biosystems, Inc. | Enzymatic ligation of 3'amino-substituted oligonucleotides |
| ES2204913T3 (en) | 1993-04-12 | 2004-05-01 | Northwestern University | METHOD FOR TRAINING OF OLIGONUCLEOTIDES. |
| US5925517A (en) | 1993-11-12 | 1999-07-20 | The Public Health Research Institute Of The City Of New York, Inc. | Detectably labeled dual conformation oligonucleotide probes, assays and kits |
| US5523204A (en) * | 1993-12-10 | 1996-06-04 | Becton Dickinson And Company | Detection of nucleic acids in cells by strand displacement amplification |
| SE9400522D0 (en) | 1994-02-16 | 1994-02-16 | Ulf Landegren | Method and reagent for detecting specific nucleotide sequences |
| US6013445A (en) * | 1996-06-06 | 2000-01-11 | Lynx Therapeutics, Inc. | Massively parallel signature sequencing by ligation of encoded adaptors |
| US6654505B2 (en) * | 1994-10-13 | 2003-11-25 | Lynx Therapeutics, Inc. | System and apparatus for sequential processing of analytes |
| US5604097A (en) * | 1994-10-13 | 1997-02-18 | Spectragen, Inc. | Methods for sorting polynucleotides using oligonucleotide tags |
| US5695934A (en) * | 1994-10-13 | 1997-12-09 | Lynx Therapeutics, Inc. | Massively parallel sequencing of sorted polynucleotides |
| US5846719A (en) * | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
| US5744367A (en) | 1994-11-10 | 1998-04-28 | Igen International, Inc. | Magnetic particle based electrochemiluminescent detection apparatus and method |
| EP0832287B1 (en) * | 1995-06-07 | 2007-10-10 | Solexa, Inc | Oligonucleotide tags for sorting and identification |
| ATE496288T1 (en) | 1995-10-11 | 2011-02-15 | Luminex Corp | SIMULTANEOUS MULTIPLE ANALYSIS OF CLINICAL SAMPLES |
| US5962228A (en) * | 1995-11-17 | 1999-10-05 | Lynx Therapeutics, Inc. | DNA extension and analysis with rolling primers |
| US5780231A (en) * | 1995-11-17 | 1998-07-14 | Lynx Therapeutics, Inc. | DNA extension and analysis with rolling primers |
| US5763175A (en) * | 1995-11-17 | 1998-06-09 | Lynx Therapeutics, Inc. | Simultaneous sequencing of tagged polynucleotides |
| US5854033A (en) | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
| DK0862656T3 (en) * | 1995-11-21 | 2001-04-09 | Univ Yale | Unimolecular segment amplification and detection |
| DE69739357D1 (en) | 1996-06-04 | 2009-05-28 | Univ Utah Res Found | MONITORING HYBRIDIZATION DURING PCR |
| US6228589B1 (en) * | 1996-10-11 | 2001-05-08 | Lynx Therapeutics, Inc. | Measurement of gene expression profiles in toxicity determination |
| US5888737A (en) * | 1997-04-15 | 1999-03-30 | Lynx Therapeutics, Inc. | Adaptor-based sequence analysis |
| JP4294740B2 (en) * | 1997-05-23 | 2009-07-15 | ソレクサ・インコーポレイテッド | System and apparatus for serial processing of analytes |
| US6969488B2 (en) * | 1998-05-22 | 2005-11-29 | Solexa, Inc. | System and apparatus for sequential processing of analytes |
| AU739963B2 (en) * | 1997-06-27 | 2001-10-25 | Lynx Therapeutics, Inc. | Method of mapping restriction sites in polynucleotides |
| US6124120A (en) * | 1997-10-08 | 2000-09-26 | Yale University | Multiple displacement amplification |
| US6265163B1 (en) * | 1998-01-09 | 2001-07-24 | Lynx Therapeutics, Inc. | Solid phase selection of differentially expressed genes |
| EP1051517A2 (en) * | 1998-01-27 | 2000-11-15 | Clinical Micro Sensors, Inc. | Amplification of nucleic acids with electronic detection |
| WO2000004193A1 (en) * | 1998-07-20 | 2000-01-27 | Yale University | Method for detecting nucleic acids using target-mediated ligation of bipartite primers |
| US20010055763A1 (en) * | 1998-12-24 | 2001-12-27 | Sharat Singh | Individually addressable solid surfaces for multiplexed operations |
| US6261782B1 (en) * | 1999-04-06 | 2001-07-17 | Yale University | Fixed address analysis of sequence tags |
| CA2374596A1 (en) | 1999-05-20 | 2000-11-30 | Illumina, Inc. | Method and apparatus for retaining and presenting at least one microsphere array to solutions and/or to optical imaging systems |
| US6544732B1 (en) | 1999-05-20 | 2003-04-08 | Illumina, Inc. | Encoding and decoding of array sensors utilizing nanocrystals |
| US6692918B2 (en) * | 1999-09-13 | 2004-02-17 | Nugen Technologies, Inc. | Methods and compositions for linear isothermal amplification of polynucleotide sequences |
| US7390632B2 (en) * | 1999-09-30 | 2008-06-24 | Tumor Biology Investment Group, Inc. | Soluble ErbB3 receptor isoforms |
| AU2001285155A1 (en) * | 2000-08-21 | 2002-03-04 | Lynx Therapeutics, Inc. | Polymorphic dna fragments and uses thereof |
| US6897023B2 (en) * | 2000-09-27 | 2005-05-24 | The Molecular Sciences Institute, Inc. | Method for determining relative abundance of nucleic acid sequences |
| US20030049616A1 (en) * | 2001-01-08 | 2003-03-13 | Sydney Brenner | Enzymatic synthesis of oligonucleotide tags |
| GB0114854D0 (en) * | 2001-06-18 | 2001-08-08 | Medical Res Council | Selective gene amplification |
| US6893822B2 (en) * | 2001-07-19 | 2005-05-17 | Nanogen Recognomics Gmbh | Enzymatic modification of a nucleic acid-synthetic binding unit conjugate |
| US20040091857A1 (en) * | 2001-07-20 | 2004-05-13 | Nallur Girish N. | Gene expression profiling |
| US7371580B2 (en) * | 2001-08-24 | 2008-05-13 | Agilent Technologies, Inc. | Use of unstructured nucleic acids in assaying nucleic acid molecules |
| AU2003234255A1 (en) * | 2002-04-26 | 2003-11-10 | Lynx Therapeutics, Inc. | Constant length signatures for parallel sequencing of polynucleotides |
| JP2006500959A (en) | 2002-09-30 | 2006-01-12 | パラレル バイオサイエンス， インコーポレイテッド | Polynucleotide synthesis and labeling by dynamic sampling binding |
| DE602004026033D1 (en) * | 2003-01-29 | 2010-04-29 | 454 Corp | SECONDARY SEQUENCING |
| WO2005026686A2 (en) * | 2003-09-09 | 2005-03-24 | Compass Genetics, Llc | Multiplexed analytical platform |
| GB0324456D0 (en) * | 2003-10-20 | 2003-11-19 | Isis Innovation | Parallel DNA sequencing methods |
| EP1687406B1 (en) * | 2003-11-10 | 2010-01-27 | Geneohm Sciences, Inc. | Nucleic acid detection method having increased sensitivity |
| US7531306B2 (en) * | 2003-11-12 | 2009-05-12 | Geneohm Sciences, Inc. | Nucleic acid hybridization methods |
| JP2007521833A (en) * | 2004-02-12 | 2007-08-09 | コンパス ジェネティクス エルエルシー | Genetic analysis by sequence-specific classification |
| WO2006086209A2 (en) * | 2005-02-10 | 2006-08-17 | Compass Genetics, Llc | Genetic analysis by sequence-specific sorting |
| WO2008070352A2 (en) * | 2006-10-27 | 2008-06-12 | Complete Genomics, Inc. | Efficient arrays of amplified polynucleotides |
| AU2008254986A1 (en) * | 2007-05-14 | 2008-11-27 | Insight Genetics, Inc. | Methods of screening nucleic acids for single nucleotide variations |
| EP2171097A2 (en) * | 2007-06-29 | 2010-04-07 | Population Genetics Technologies LTD. | Methods and compositions for isolating nucleic acid sequence variants |
| US8034568B2 (en) * | 2008-02-12 | 2011-10-11 | Nugen Technologies, Inc. | Isothermal nucleic acid amplification methods and compositions |
-
2008
- 2008-06-27 EP EP08829556A patent/EP2171097A2/en not_active Withdrawn
- 2008-06-27 US US12/163,571 patent/US7635566B2/en active Active
- 2008-06-27 WO PCT/IB2008/003320 patent/WO2009031054A2/en not_active Ceased
- 2008-06-27 EP EP11164766A patent/EP2395113A1/en not_active Withdrawn
-
2009
- 2009-11-09 US US12/615,051 patent/US8241850B2/en active Active
Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0969103A2 (en) * | 1993-06-22 | 2000-01-05 | Pharmacia Biotech AB | Parallel primer extension approach to nucleic acid sequence analysis |
| EP1693469A2 (en) * | 1995-04-07 | 2006-08-23 | Oxford Gene Technology Ip Limited | Detecting DNA sequence variations |
| WO1999009211A1 (en) * | 1997-08-13 | 1999-02-25 | Tepnel Medical Limited | Amplification of nucleic acids |
| WO2005111244A2 (en) * | 2004-05-10 | 2005-11-24 | Exact Sciences Corporation | Methods for detecting a mutant nucleic acid |
Also Published As
| Publication number | Publication date |
|---|---|
| US8241850B2 (en) | 2012-08-14 |
| US20100136557A1 (en) | 2010-06-03 |
| US7635566B2 (en) | 2009-12-22 |
| WO2009031054A2 (en) | 2009-03-12 |
| US20090004665A1 (en) | 2009-01-01 |
| EP2395113A1 (en) | 2011-12-14 |
| EP2171097A2 (en) | 2010-04-07 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| Deininger | Alu elements: know the SINEs | |
| EP3006571B1 (en) | Hla gene multiplex dna typing method and kit | |
| Gholami et al. | A tailed PCR procedure for cost‐effective, two‐order multiplex sequencing of candidate genes in polyploid plants | |
| Kramerov et al. | SINEs | |
| EP2663655B1 (en) | Paired end random sequence based genotyping | |
| US10683533B2 (en) | Capture reactions | |
| WO2012003374A3 (en) | Targeted sequencing library preparation by genomic dna circularization | |
| US20150284789A1 (en) | Method for targeted sequencing | |
| EP3450569B1 (en) | Dna amplification method | |
| AU2017261606A1 (en) | Method and kit for DNA typing of HLA gene | |
| US9850481B2 (en) | Method for genome complexity reduction and polymorphism detection | |
| WO2008058282A3 (en) | Methods and compositions for large-scale analysis of nucleic acids using dna deletions | |
| WO2010011506A3 (en) | Risk factors and a therapeutic target for neurodegenerative disorders | |
| WO2009105680A3 (en) | Genetic polymorphisms associated with stroke, methods of detection and uses thereof | |
| WO2008052101A3 (en) | Multiplex automated genome engineering | |
| JP2016539624A5 (en) | ||
| WO2015200701A3 (en) | Software haplotying of hla loci | |
| WO2008147930A3 (en) | Methods and kits for linking polymorphic sequences to expanded repeat mutations | |
| WO2009116863A3 (en) | Expression-linked gene discovery | |
| WO2008103900A3 (en) | Selection and enrichment of proteins using in vitro compartmentalization | |
| WO2014118377A3 (en) | Primer technology | |
| EP3108005A1 (en) | High-resolution hla typing | |
| US20230220466A1 (en) | Immune cell sequencing methods | |
| JP2014516569A5 (en) | ||
| WO2010034690A3 (en) | Method for lowering the dependency towards sequence variation of a nucleic acid target in a diagnostic hybridization assay |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| 121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 08829556 Country of ref document: EP Kind code of ref document: A2 |
|
| NENP | Non-entry into the national phase |
Ref country code: DE |
|
| WWE | Wipo information: entry into national phase |
Ref document number: 2008829556 Country of ref document: EP |