WO2009074882A3 - One-step target detection assay using a tagged and blocked target-specific pcr primer and an anti-tag capture complex - Google Patents

One-step target detection assay using a tagged and blocked target-specific pcr primer and an anti-tag capture complex Download PDF

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Publication number
WO2009074882A3
WO2009074882A3 PCT/IB2008/003869 IB2008003869W WO2009074882A3 WO 2009074882 A3 WO2009074882 A3 WO 2009074882A3 IB 2008003869 W IB2008003869 W IB 2008003869W WO 2009074882 A3 WO2009074882 A3 WO 2009074882A3
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WO
WIPO (PCT)
Prior art keywords
nucleic acid
target
sequence
capture complex
primer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/IB2008/003869
Other languages
French (fr)
Other versions
WO2009074882A2 (en
Inventor
Barbara Galvan-Goldman
Agnes Zoldowski
Susan Bortolin
Franck Merante
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Luminex Molecular Diagnostics Inc
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Luminex Molecular Diagnostics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Luminex Molecular Diagnostics Inc filed Critical Luminex Molecular Diagnostics Inc
Priority to EP08860181A priority Critical patent/EP2215245A2/en
Priority to CA2704487A priority patent/CA2704487A1/en
Publication of WO2009074882A2 publication Critical patent/WO2009074882A2/en
Anticipated expiration legal-status Critical
Publication of WO2009074882A3 publication Critical patent/WO2009074882A3/en
Ceased legal-status Critical Current

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The present invention provides nucleic acid amplification, detection, and genotyping techniques. In one embodiment, the present invention provides a method for amplifying and detecting a target nucleic acid sequence by providing a first primer pair comprising: a first primer comprising a target specific sequence, a tag sequence 5' of the target specific sequence, and a blocker between the target specific sequence and the tag sequence, and a second primer comprising a target specific sequence; providing a reporter attached to either the second primer or to a dNTP; providing a capture complex comprising an anti-tag sequence attached to a solid support; combining the first primer pair, the capture complex, the reporter, and a sample comprising a target nucleic acid sequence under conditions suitable for amplification of the target nucleic acid sequence and hybridization of the amplified target nucleic acid sequence to the capture complex; and detecting the amplified target nucleic acid sequence.
PCT/IB2008/003869 2007-11-02 2008-10-31 One-step target detection assay Ceased WO2009074882A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
EP08860181A EP2215245A2 (en) 2007-11-02 2008-10-31 One-step target detection assay
CA2704487A CA2704487A1 (en) 2007-11-02 2008-10-31 One-step target detection assay

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US98498207P 2007-11-02 2007-11-02
US60/984,982 2007-11-02

Publications (2)

Publication Number Publication Date
WO2009074882A2 WO2009074882A2 (en) 2009-06-18
WO2009074882A3 true WO2009074882A3 (en) 2011-04-28

Family

ID=40722051

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IB2008/003869 Ceased WO2009074882A2 (en) 2007-11-02 2008-10-31 One-step target detection assay

Country Status (4)

Country Link
US (1) US20090148849A1 (en)
EP (1) EP2215245A2 (en)
CA (1) CA2704487A1 (en)
WO (1) WO2009074882A2 (en)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE102007029772B4 (en) * 2007-06-22 2011-12-08 Aj Innuscreen Gmbh Method and rapid test for the detection of specific nucleic acid sequences
JP5785942B2 (en) * 2009-06-29 2015-09-30 ルミネックス コーポレーション Chimeric primer with hairpin conformation and use thereof
EP2495334B1 (en) * 2009-10-29 2018-04-18 NGK Insulators, Ltd. Method for detection of target nucleic acid
CN108192952A (en) 2011-09-29 2018-06-22 露美内克丝公司 Hydrolysis probes
WO2013148498A1 (en) 2012-03-27 2013-10-03 Ventana Medical Systems, Inc. Signaling conjugates and methods of use
US20140378327A1 (en) 2013-06-19 2014-12-25 Luminex Corporation Real-time multiplexed hydrolysis probe assay using spectrally identifiable microspheres
EP3715470B1 (en) 2013-08-09 2023-10-11 Luminex Corporation Probes for improved melt discrimination and multiplexing in nucleic acid assays
EP4613872A3 (en) 2014-08-11 2025-11-12 Luminex Corporation Probes for improved melt discrimination and multiplexing in nucleic acid assays
EP3735473A1 (en) * 2018-01-05 2020-11-11 Quotient Suisse SA Self-assembling diagnostic array platform
US20210147830A1 (en) * 2018-06-29 2021-05-20 Thermo Fisher Scientific Geneart Gmbh High throughput assembly of nucleic acid molecules

Citations (3)

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Publication number Priority date Publication date Assignee Title
US5525494A (en) * 1989-09-06 1996-06-11 Zeneca Limited Amplification processes
WO2005047533A1 (en) * 2003-11-17 2005-05-26 Tm Bioscience Corporation Method of detecting mutations associated with thrombosis
WO2006002525A1 (en) * 2004-06-30 2006-01-12 Tm Bioscience Pgx, Inc. Method of detecting mutations in the gene encoding cytochrome p450-2c9

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US4851331A (en) * 1986-05-16 1989-07-25 Allied Corporation Method and kit for polynucleotide assay including primer-dependant DNA polymerase
US4942124A (en) * 1987-08-11 1990-07-17 President And Fellows Of Harvard College Multiplex sequencing
IE61148B1 (en) * 1988-03-10 1994-10-05 Ici Plc Method of detecting nucleotide sequences
US5639611A (en) * 1988-12-12 1997-06-17 City Of Hope Allele specific polymerase chain reaction
US5137806A (en) * 1989-12-11 1992-08-11 Board Of Regents, The University Of Texas System Methods and compositions for the detection of sequences in selected DNA molecules
AU3728093A (en) * 1992-02-19 1993-09-13 Public Health Research Institute Of The City Of New York, Inc., The Novel oligonucleotide arrays and their use for sorting, isolating, sequencing, and manipulating nucleic acids
US5604097A (en) * 1994-10-13 1997-02-18 Spectragen, Inc. Methods for sorting polynucleotides using oligonucleotide tags
US6287778B1 (en) * 1999-10-19 2001-09-11 Affymetrix, Inc. Allele detection using primer extension with sequence-coded identity tags
US20050106564A1 (en) * 2000-06-02 2005-05-19 Hechinger Mark K. One-step, no-wash multiplex bead-based flow cytometric assay
US7226737B2 (en) * 2001-01-25 2007-06-05 Luminex Molecular Diagnostics, Inc. Polynucleotides for use as tags and tag complements, manufacture and use thereof
JP4422963B2 (en) * 2001-01-25 2010-03-03 ルミネックス モレキュラー ダイアグノスティックス， インク． Non-cross-hybridized polynucleotide families, products for use as labels and labeled complements, and methods of use thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5525494A (en) * 1989-09-06 1996-06-11 Zeneca Limited Amplification processes
WO2005047533A1 (en) * 2003-11-17 2005-05-26 Tm Bioscience Corporation Method of detecting mutations associated with thrombosis
WO2006002525A1 (en) * 2004-06-30 2006-01-12 Tm Bioscience Pgx, Inc. Method of detecting mutations in the gene encoding cytochrome p450-2c9

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
HUBER M ET AL.: "Accessing Single Nucleotide Polymorphisms in Genomic DNA by Direct Multiplex Polymerasc Chain Reaction Amplification on Oligonucleotide Microarrays", ANALYTICAL BIOCHEMISTRY, vol. 303, 2002, pages 25 - 33 *
LETANT SE ET AL.: "``Multiplered Reverse Transcriptase PCR Assay for Identification of Viral Respiratory Pathogens at the Point of Care", J CLINICAL MICROBIOLOGY., vol. 45, no. 11, 2007, pages 3498 - 3505 *
MAHONY J ET AL.: "Development of a Respiratory Virus Panel Test for Detection of Twenty Human Respiratory Viruses by Use of Multiplex PCR and a Fluid Microbead-Based Assay", J CLINICAL MICROBIOLOGY., vol. 45, no. 9, 2007, pages 2965 - 2970 *

Also Published As

Publication number Publication date
WO2009074882A2 (en) 2009-06-18
EP2215245A2 (en) 2010-08-11
US20090148849A1 (en) 2009-06-11
CA2704487A1 (en) 2009-06-18

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