WO2010000030A1 - Thiazopyrimidinones and uses thereof - Google Patents

Thiazopyrimidinones and uses thereof Download PDF

Info

Publication number
WO2010000030A1
WO2010000030A1 PCT/AU2009/000856 AU2009000856W WO2010000030A1 WO 2010000030 A1 WO2010000030 A1 WO 2010000030A1 AU 2009000856 W AU2009000856 W AU 2009000856W WO 2010000030 A1 WO2010000030 A1 WO 2010000030A1
Authority
WO
WIPO (PCT)
Prior art keywords
alkylene
group
alkyl
independently selected
halo
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/AU2009/000856
Other languages
French (fr)
Inventor
John Joseph Deadman
Eric Dale Jones
Giang Thanh Le
David Ian Rhodes
Neeranat Thienthong
Nicholas Andrew Van De Graff
Lisa Jane Winfield
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Tali Digital Ltd
Original Assignee
Avexa Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from AU2008903405A external-priority patent/AU2008903405A0/en
Application filed by Avexa Ltd filed Critical Avexa Ltd
Priority to CA2729649A priority Critical patent/CA2729649A1/en
Priority to EP09771847.2A priority patent/EP2247601B1/en
Priority to US12/733,994 priority patent/US8426405B2/en
Priority to ES09771847T priority patent/ES2408654T3/en
Priority to PL09771847T priority patent/PL2247601T3/en
Priority to JP2011515026A priority patent/JP5539978B2/en
Publication of WO2010000030A1 publication Critical patent/WO2010000030A1/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/02Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
    • C07D513/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV

Definitions

  • the present invention relates to a class of compounds useful in the treatment of viral infections, particularly HIV infections which show resistance to known HIV inhibitors.
  • HIV human immunodeficiency virus
  • a feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
  • HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell.
  • the contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs.
  • a double stranded proviral DNA copy is produced.
  • the proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins.
  • PIC pre integration complex
  • Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome. These proteins and genome assemble at the cell surface and, depending on cell type, possibly other intracellular membranous compartments.
  • Assembled particles then bud out from the cell and during, or soon after, this process mature into infectious HIV particles through the action of the viral protease.
  • the integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four.
  • the first step involves the assembly of the viral genome into a stable nucleoprotein complex, .
  • secondly processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome.
  • the final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
  • HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects.
  • Certain mutations within the wild-type viral integrase enzyme are known to confer resistance to a number of known integration inhibitors published in the literature.
  • the viral variants containing Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase represent the two of the more common viruses identified that are failing treatment with Isentress (Raltegravir, MK-0518).
  • the triple mutant Q148K/G140A/E138A is also resistant to Raltegravir.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • L 1 -R 1 is 0-2 substituents wherein:
  • each R 1 is independently selected from the group consisting of hydrogen, d-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlJyINR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SO 2 C 1-10 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • R 3 and R 4 are each independently selected from the group consisting of hydrogen, C MO alkyl, Ci -10 NR 5 R 6 , -(CO)(CO)NR 5 R 6 ; or R 3 and R 4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C 1-4 alkyl 5 CO 2 C 1-4 alkyl, NR 5 R 6; C 1 ⁇ aIlCyINR 5 R 6 -;
  • R 5 and R 6 are each independently selected from the group consisting of H and Ci -4 alkyl or R 5 and R 6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N 5 O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C ⁇ aUcyl;
  • R 1 when R 1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from C 1-10 alkyl, -O-C 1-10 alkyl, C 1-1O aHCyINR 3 R 45 -0-C 1-1O aUCyINR 3 R 45 halo, NR 3 R 4 , alkylaryl, -O-alkylaryl, SO 2 NR 3 R 4
  • H 1 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S;
  • L 2 -R 7 is 0-2 substituents wherein:
  • each R 7 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlCyINR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SO 2 C 1-10 alkyl, and C 5 . 10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • X is CR 8 R 8 -
  • each of R 8 and R 8 - is independently selected from the group consisting of H .and CH 3 , preferably H;
  • H 2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N; O and S;
  • L 3 -R 9 is 0-3 substituents wherein:
  • each L 3 is independently absent or is selected from the group consisting of Z,
  • each R 9 is independently selected from the group consisting of hydrogen, C 1-10 alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIkVlNR 3 R 4 , halo, NR 3 R 4 , heterocyclyl, heteroaryl, alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SO 2 C 1 . 10 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
  • the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
  • the present invention provides pharmaceutical composition
  • a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • L 1 -R 1 is 0-2 substituents wherein:
  • each R 1 is independently selected from the group consisting of hydrogen, C M oalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlCyINR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SChCnoalkyl, and C 5 . 10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • R 3 and R 4 are each independently selected from the group consisting of hydrogen, C 1-10 alkyl, C 1-10 NR 5 R 6 , -(CO)(CO)NR 5 R 6 ; or R 3 and R 4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C 1-4 alkyl, CO 2 C 1-4 alkyl, NR 5 R 6; C M alkylNR 5 R 6 ;
  • R 5 and R 6 are each independently selected from the group consisting of H and C 1-4 alkyl or R 5 and R 6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S 5 S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C 1-4 alkyl;
  • R 1 when R 1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from Ci-ioalkyl, -O-C 1-10 alkyl, C 1-10 alkylNR 3 R 4 , -O-C 1-10 alkylNR 3 R 4 , halo, NR 3 R 4 , alkylaryl, -O-alkylaryl, SO 2 NR 3 R 4
  • H 1 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S;
  • L 2 -R 7 is 0-2 substituents wherein:
  • each R 7 is independently selected from the group consisting of hydrogen, C 1-10 alkyl wherein one or more of the carbon atoms of the alkyl chain may ⁇ optionally be replaced with oxygen atoms, Q-ioalkylNRsRi, halo, NR 3 R 4 , alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SO 2 C M0 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • X is CR 8 R 8 '
  • each OfR 8 and Rg' is independently selected from the group consisting of H and CH 3 , preferably H;
  • H 2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing • between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
  • L 3 -R 9 is 0-3 substituents wherein:
  • each L 3 is independently absent or is selected from the group consisting of Z,
  • each R 9 is independently selected from the group consisting of hydrogen, C M oalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlCyINR 3 R 4 , halo, NR 3 R 4 , ⁇ heterocyclyl, heteroaryl, alkylaryl, S(O)N 3 R 4 , SO 2 NR 3 R 4 , SO 2 C 1-10 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
  • L 1 -R 1 is one substituent.
  • L 1 is -CH 2 - and R 1 is N-piperidine, N-piperazine, N, N'-methyl-piperazine, or N-morpholino.
  • H 1 is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, imidazole, triazole, tetrazole, and thiazole. More preferably, H 1 is 2,5-substituted thiazole.
  • H 2 is phenyl
  • NR 3 R 4 where it occurs in L 3 -R 9 is morpholino, a f ⁇ ve-membered cyclic sulphonamide (such as isothiazolidine) or a six membered cyclic sulphonamide.
  • L 1 -R 1 is one substituent wherein L 1 is absent and R 1 is Ci- 10 alkyl, preferably methyl.
  • the compound is selected from the group consisting of:
  • halo or halogen refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo).
  • alkyl and alkylene either used alone or in compound terms such as NH(alkyl) or N(alkyl) 2 , refer respectively to monovalent and divalent straight chain or branched hydrocarbon groups, having 1 to 3, 1 to 6, or 1 to 10 carbon atoms as appropriate.
  • suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-methylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
  • alkenyl refers to a straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to, ethenyl, allyl, propenyl, iso-propenyl, butenyl, pentenyl and hexenyl.
  • cycloalkyl refers to cyclic hydrocarbon groups. Suitable. cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
  • aryl refers to a C 6 -C 10 aromatic hydrocarbon group, for example phenyl or naphthyl.
  • alkylaryl includes, for example, benzyl.
  • heterocycle when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C 3-6 ,wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue.
  • bonds between atoms may be saturated or unsaturated.
  • Suitable heteroatoms include, O, N and S. • Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms.
  • heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, 2,2'-dimethyl-[l,3]-dioxolanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl etc.
  • heteroaryl includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S.
  • Suitable examples of heteroaryl groups include furanyl, thiophenyl, tetrazolyl, 1,2,3-triazolyl, 1 ,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl, thioazolyl, thiodiazolyl etc.
  • the heteroaromatic ring may be fused to a 5- or 6-membered aromatic or heteroaromatic ring to form a bicyclic aromatic ring system eg benzofuran.
  • each alkyl, alkylene, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with one or more of Q-Csalkyl, C3- C 6 cycloalkyl, C 6 aryl, heterocyclyl, heteroaryl, Ci-C 3 alkylOH, alkylaryl, OH 5 OCi-Csalkyl, halo, CN, NO 2 , CO 2 H, CO ⁇ Aalkyl, CONH 2 , CONHCd.Csalkyl), CON(C 1- C 3 alkyl) 2 , trifluoromethyl, NH 2 , NHCd.Csalkyl) or N(C 1- C 3 alkyl) 2 .
  • an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group
  • an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl.
  • Each optional alkyl, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl substituent may also be optionally substituted.
  • optional substituents also include suitable nitrogen protecting groups (see “Protective Groups in Organic Synthesis” Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
  • salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts.
  • pharmaceutically acceptable derivative may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
  • Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
  • pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, n
  • Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine, and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • pharmaceutically acceptable cations such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine, and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • lower alkyl halide such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides
  • dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • Hydroxyl groups may be esterified with groups including lower alkyl carboxylic acids, such as acetic acid and 2,2-dimethylpropionic acid, or sulfonated with groups including alkyl sulfonic acids, such as methyl sulfonic acid
  • This invention also encompasses pharmaceutical compositions containing prodrugs of compounds of formula I.
  • This invention also encompasses methods of treating or preventing a viral infection in a subject by administering prodrugs of compounds of the formula I.
  • Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
  • Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined to free amino, hydroxy and carboxylic acid groups of compounds of formula I.
  • the amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone.
  • Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain.
  • Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) j oined through a phosphorus- oxygen bond to a free hydroxyl of compounds of formula I.
  • the compounds of formula I may possess asymmetric ⁇ centres and are therefore capable of existing in more than one stereoisomeric form.
  • the invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof.
  • Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
  • the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
  • the viral infection of the second and third aspects is a HIV or SIV infection.
  • the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir.
  • the viral strain comprises HIV integrase enzyme containing the Q148H/G140S double mutation, N155H/E92Q double mutation, the F121 Y/T124K double mutation or the Q148K/G140A/E138A triple mutation.
  • the compound of formula (I) is co-administered with Raltegravir.
  • the compound of formula (I) can be administered simultaneously with Raltegravir, or the compound of formula (I) can be dminsistered before or after the administration of Raltegravir provided they are in the same course of treatment as would be understood by the person skilled in the art.
  • the present invention provides pharmaceutical composition
  • a pharmaceutically acceptable carrier, diluent or excipient comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • compositions of the present invention may contain other therapeutic agents as ⁇ described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
  • the compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • parenterally such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • compositions include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation.
  • the compounds of the invention may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
  • mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated.
  • the method can also be practiced in other species, such as avian species (e.g., chickens).
  • the subjects treated in the above method are mammals, including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species, and preferably a human being, male or female.
  • the term "effective amount” means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
  • treatment does not necessarily mean that the viral infection is completely cured.
  • treatment encompasses any reduction in the viral load and/or inhibition of replication in the subject being treated.
  • composition as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • pharmaceutically acceptable it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
  • administering a should be understood to mean providing a compound of the invention to the individual in need of treatment.
  • compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy.
  • AU methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients.
  • the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation.
  • the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases.
  • composition is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • the pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension.
  • This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above.
  • the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butane diol.
  • the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil may be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid find use in the preparation of injectables.
  • the pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles.
  • the combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects.
  • an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses.
  • the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day.
  • a suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0.5 to 5 or 5 to 50 mg/kg per day.
  • compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0. 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated.
  • the compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
  • the amino compound can be reacted as in scheme 1 with the fumarate derivative or suitable analogues of fumarate where for example the acetyl groups can be replaced by other suitable leaving groups such as tosyl or mesyl.
  • the reaction can be carried out in a suitable solvent such as methanol, DME, DMA, DMSO, chloroform, THF or dioxane.
  • the reaction can be heated or subject to microwave irradiation (see for example B. R. Roberts & C. R. Strauss, Ace. Chem. Res. 2005, 38, 653-661, "Toward Rapid, 'Green' Predictable Microwave-assisted Synthesis").
  • the reaction can be performed in the absence or presence of catalytic amounts of acid or base.
  • R 4-F; 2,4-CI 2 International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
  • R 4-CI:. Chem. Pharm. Bull. 1984, 32 (7), 2536-2543
  • Scheme 22 Derivatization of the aromatic ring: metal mediated couplings with DMF
  • Scheme 23 Derivatization of the aromatic ring: amide formation in ortho position
  • Scheme 24 Derivatization of the aromatic ring: amine in ortho position
  • Scheme 25 Derivatization of thiazole by coupling G
  • Buffer A 100% acetonitrile
  • Buffer B 0.1% aqueous TFA
  • the titled compound was prepared by adapting methods described in Example 8.1-8.2 of PCT/AU2007/001980 using as a starting material 6-Hydroxy-2-methyl-5-oxo-5H- thiazolo[3,2-a] pyrimidine-7-carboxylic acid methyl ester prepared according to example l(a).
  • Monogram Bioscience' PhenoScreen assay allows the evaluation of integrase inhibitors for activity against a variety of HIV variants.
  • the assay uses virus generated from 2 DNA constructs; one containing the HIV LTR, gag and pol regions, as well as a luciferase reporter gene in place of the viral envelope genes, and a second DNA construct containing the amphotrophic murine leukemia virus (A-MLV) envelope gene required to pseudotype virions and render them capable of entry into a target cell.
  • A-MLV amphotrophic murine leukemia virus
  • Viruses generated using these constructs by transfection into a producer cell line such as 293 T are capable of one-round of infection only. Successful integration events are directly proportional to the levels of luciferase expression 48h after infection.
  • the viral variants chosen by Avexa Ltd to screen their in-house integration inhibitors against consist of mutations within the viral integrase enzyme known to confer resistance to a number of known integration inhibitors published in the literature.
  • the viral variants containing the Q148H/G140S double mutation in integrase, and the Nl 55H/E92Q double mutation in integrase represent two of the more common viruses identified to arise in patients that are failing treatment with Isentress (Raltegravir, MK-0518).
  • Avexa's IN-Screen assay relies on reporter gene expression levels 58h following infection.
  • Avexa's assay uses full-length, replication competent HIV generated by transfection of 293T cells, and target cells stably transfected with a construct containing B-galactosidase under the control of a TAT- dependent HIV LTR promoter.
  • virus infection at a multiplicity of infection of 0.1
  • the viral Tat protein is produced from the newly integrated provirus which is then able to trans-activate expression of the B- galactosidase reporter gene.
  • B-galactosidase expression is then measured in the cell population using the commercially available GalactoStar kit (Applied Biosystems) according to the manufacturers instructions.
  • HIV integrase was mutated within a shuttle vector (pGEM) containing the majority of the HIV-I gag and pol sequence using site directed mutagenesis to generate integrase sequences that have been published as conferring resistance to published integrase inhibitors. These include, but are not limited to, mutations such as Q148K.
  • the integrase coding region was then subject to PCR and cloned into a bacterial expression vector. The specific introduction of desired mutation(s) was confirmed by sequence analysis. Proteins were expressed, purified and used in strand transfer assays.
  • Phytochemistry. 2004 Dec;65(24):3255-9. is used. Briefly, 400ng of the enzyme, wild type or drug resistant mutant, is mixed with the compound to be tested and incubated with 3OnM substrate DNA.
  • the substrate DNA is designed to mimic HIV DNA termini that has undergone 3 'end processing, and consists of the annealed U5 LTR sequence oligonucleotides tagged with Digoxigenin (DIG; 5'-
  • Products generated as a result of strand transfer activity are bound to streptavidin plates and detected using anti-DIG-alkaline phosphatase conjugate and p-nitro phenyl phosphate substrate.
  • Both the Phenosense assay and the Enzyme assay give substantially the same activity values for any particular compound and enzyme pair. The activity of one compound in one assay can therefore be directly compared to the activity of a second compound in the other assay.
  • Table 1 Activity of selected examples against wild type and mutant integrases and HIV-s

Landscapes

  • Organic Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Virology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Communicable Diseases (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Oncology (AREA)
  • Animal Behavior & Ethology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Health & Medical Sciences (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • AIDS & HIV (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Molecular Biology (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Nitrogen And Oxygen Or Sulfur-Condensed Heterocyclic Ring Systems (AREA)

Abstract

The present invention provides a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof. The present invention further provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof. Pharmaceutical compositions comprising a compound of formula (I) are also provided.

Description

THIAZOPYRIMIDINONES AND USES THEREOF
FIELD OF THE INVENTION
The present invention relates to a class of compounds useful in the treatment of viral infections, particularly HIV infections which show resistance to known HIV inhibitors.
BACKGROUND OF THE INVENTION
The retrovirus designated "human immunodeficiency virus" or "HIV" is the etiological agent of a complex disease that progressively destroys the immune system. This disease is known as acquired immune deficiency syndrome or AIDS. As at December 2005 an estimated 40 million people are living with HIV world wide and over 3 million deaths are occurring annually.
A feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell. The contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs. Through a series of steps a double stranded proviral DNA copy is produced. The proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins. Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome. These proteins and genome assemble at the cell surface and, depending on cell type, possibly other intracellular membranous compartments.
Assembled particles then bud out from the cell and during, or soon after, this process mature into infectious HIV particles through the action of the viral protease.
The integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four. The first step involves the assembly of the viral genome into a stable nucleoprotein complex, . secondly, processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome. The final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
Currently HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects.
Certain mutations within the wild-type viral integrase enzyme are known to confer resistance to a number of known integration inhibitors published in the literature. In particular, the viral variants containing Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase represent the two of the more common viruses identified that are failing treatment with Isentress (Raltegravir, MK-0518). The triple mutant Q148K/G140A/E138A is also resistant to Raltegravir. See: Kobayashi et al, Antiviral Research, received 17 April 2008, accepted 17 June 2008; and Vacca et al; Discovery of MK-2048 - subtle changes confer unique resistance properties to a series of tricyclic hydroxypyrrole integrase strand transfer inhibitors; Abstract from the 4th IAS Conference on HIV Pathogenesis Treatment and Prevention; 22-25 July 2007, Sydney, Australia.
The specifications of Australian Provisional Patent Application Nos. 2006907283, 2007902479, 2007903401 and 2007904114 and International Patent Application No PCT/AU2007/001980 which derives priority from these applications describe a broad class of compounds that inhibit HIV integrase activity. The present inventors have now determined that a sub-class of these compounds are surprisingly effective (when compared to other members of the class) against viral variants containing the Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase. SUMMARY OF THE INVENTION
In a first aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000004_0001
L1-R1 is 0-2 substituents wherein:
each L1 is independently absent or is selected from the group consisting of Z, C1-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-Ci-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, NH;
each R1 is independently selected from the group consisting of hydrogen, d-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlJyINR3R4, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SO2C1-10alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, CMOalkyl, Ci-10NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C1-4alkyl5 CO2C1-4alkyl, NR5R6; C1^aIlCyINR5R6-;
R5 and R6 are each independently selected from the group consisting of H and Ci-4alkyl or R5 and R6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N5 O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C^aUcyl;
when R1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from C1-10alkyl, -O-C1-10alkyl, C1-1OaHCyINR3R45 -0-C1-1OaUCyINR3R45 halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
H1 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S;
L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z5 C1-3alkylene5 >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1-3alkylene5 -C1.3alkylene-C(=Z)-5 -C1-3alkylene-CZ2- wherein each Z is independently selected from O5 S, and
NH;
each R7 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SO2C1-10alkyl, and C5.10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8R8-
each of R8 and R8- is independently selected from the group consisting of H .and CH3, preferably H; H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N; O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is selected from the group consisting of Z,
C1-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R9 is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIkVlNR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)N3R4, SO2NR3R4, SO2C1.10alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
In a second aspect, the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
In a third aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
In a fourth aspect, the present invention provides pharmaceutical composition comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient. DETAILED DESCRIPTION OF THE INVENTION
In a first aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000007_0001
L1-R1 is 0-2 substituents wherein:
each L1 is independently absent or is selected from the group consisting of Z, C1-3alkylene, >C=Z, -CZ2-, -C(=Z)Ci.3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O5 S, NH;
each R1 is independently selected from the group consisting of hydrogen, CMoalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SChCnoalkyl, and C5.10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, C1-10alkyl, C1-10NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C1-4alkyl, CO2C1-4alkyl, NR5R6; CMalkylNR5R6;
R5 and R6 are each independently selected from the group consisting of H and C1-4alkyl or R5 and R6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S5 S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C1-4alkyl;
when R1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from Ci-ioalkyl, -O-C1-10alkyl, C1-10alkylNR3R4, -O-C1-10alkylNR3R4, halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
H1 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S;
L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z, C1-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and
NH;
each R7 is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may ■ optionally be replaced with oxygen atoms, Q-ioalkylNRsRi, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SO2CM0alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8R8'
each OfR8 and Rg' is independently selected from the group consisting of H and CH3, preferably H; H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is selected from the group consisting of Z,
Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-d.3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R9 is independently selected from the group consisting of hydrogen, CMoalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)N3R4, SO2NR3R4, SO2C1-10alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
In one embodiment, L1-R1 is one substituent.
Preferably, L1 is -CH2- and R1 is N-piperidine, N-piperazine, N, N'-methyl-piperazine, or N-morpholino.
Preferably, H1 is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, imidazole, triazole, tetrazole, and thiazole. More preferably, H1 is 2,5-substituted thiazole.
Preferably, H2 is phenyl.
In one embodiment, L3-R9 is one substituent and is halo, preferably chloro or fluoro, more preferably fluoro. In another embodiment, L3-R9 is at least 2 substituents wherein the first L3-R9 is halo and in the second L3-R9, L3 is absent or is selected from >C=O and R9 is selected from the group consisting of halo, NR3R4 and SO2NR3R4.
In one embodiment, NR3R4 where it occurs in L3-R9 is morpholino, a fϊve-membered cyclic sulphonamide (such as isothiazolidine) or a six membered cyclic sulphonamide.
In another embodiment, L1-R1 is one substituent wherein L1 is absent and R1 is Ci-10alkyl, preferably methyl. Preferably, the compound is selected from the group consisting of:
Figure imgf000010_0001
Figure imgf000011_0001
Figure imgf000012_0001
Figure imgf000013_0001
Figure imgf000014_0001
Figure imgf000015_0001
Figure imgf000016_0001
Further preferred are compounds of Formula (I) as set out in the examples. As used herein, the term "halo" or "halogen" refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo).
As used herein, the terms "alkyl" and "alkylene" either used alone or in compound terms such as NH(alkyl) or N(alkyl)2, refer respectively to monovalent and divalent straight chain or branched hydrocarbon groups, having 1 to 3, 1 to 6, or 1 to 10 carbon atoms as appropriate. For example, suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-methylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
As used herein, the term "alkenyl" refers to a straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to, ethenyl, allyl, propenyl, iso-propenyl, butenyl, pentenyl and hexenyl.
The term "cycloalkyl" as used herein, refers to cyclic hydrocarbon groups. Suitable. cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
The term "aryl" as used herein, refers to a C6-C10 aromatic hydrocarbon group, for example phenyl or naphthyl.
The term "alkylaryl" includes, for example, benzyl.
The term "heterocycle" when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C3-6,wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue. The bonds between atoms may be saturated or unsaturated. Suitable heteroatoms include, O, N and S. • Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms. Suitable examples of heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, 2,2'-dimethyl-[l,3]-dioxolanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl etc.
The term "heteroaryl" includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S. Suitable examples of heteroaryl groups include furanyl, thiophenyl, tetrazolyl, 1,2,3-triazolyl, 1 ,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl, thioazolyl, thiodiazolyl etc.' The heteroaromatic ring may be fused to a 5- or 6-membered aromatic or heteroaromatic ring to form a bicyclic aromatic ring system eg benzofuran.
Unless otherwise stated, each alkyl, alkylene, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with one or more of Q-Csalkyl, C3- C6cycloalkyl, C6aryl, heterocyclyl, heteroaryl, Ci-C3alkylOH, alkylaryl, OH5 OCi-Csalkyl, halo, CN, NO2, CO2H, CO^Aalkyl, CONH2, CONHCd.Csalkyl), CON(C1-C3alkyl)2, trifluoromethyl, NH2, NHCd.Csalkyl) or N(C1-C3alkyl)2. For example, an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group, and an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl. Each optional alkyl, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl substituent may also be optionally substituted.
Examples of optional substituents also include suitable nitrogen protecting groups (see "Protective Groups in Organic Synthesis" Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
The salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts.
The term "pharmaceutically acceptable derivative" may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids. Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine, and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine. General information on types of pharmaceutically acceptable salts and their formation is known to those skilled in the art and is as described in general texts such as "Handbook of Pharmaceutical salts'" P.H.Stahl, C.G.Wermuth, 1st edition, 2002, Wiley-VCH.
Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
Hydroxyl groups may be esterified with groups including lower alkyl carboxylic acids, such as acetic acid and 2,2-dimethylpropionic acid, or sulfonated with groups including alkyl sulfonic acids, such as methyl sulfonic acid
This invention also encompasses pharmaceutical compositions containing prodrugs of compounds of formula I. This invention also encompasses methods of treating or preventing a viral infection in a subject by administering prodrugs of compounds of the formula I. Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined to free amino, hydroxy and carboxylic acid groups of compounds of formula I. The amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain. Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) j oined through a phosphorus- oxygen bond to a free hydroxyl of compounds of formula I.
It will also be recognised that the compounds of formula I may possess asymmetric ■ centres and are therefore capable of existing in more than one stereoisomeric form. The invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof. Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
In a second aspect, the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
In a third aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
Preferably, the viral infection of the second and third aspects is a HIV or SIV infection.
More preferably, the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir. Even more preferably, the viral strain comprises HIV integrase enzyme containing the Q148H/G140S double mutation, N155H/E92Q double mutation, the F121 Y/T124K double mutation or the Q148K/G140A/E138A triple mutation.
In a preferred form of the second and third aspects of the present invention, the compound of formula (I) is co-administered with Raltegravir. The compound of formula (I) can be administered simultaneously with Raltegravir, or the compound of formula (I) can be dminsistered before or after the administration of Raltegravir provided they are in the same course of treatment as would be understood by the person skilled in the art.
In a fourth aspect, the present invention provides pharmaceutical composition comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
The compositions of the present invention may contain other therapeutic agents as described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
The compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
Pharmaceutical formulations include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation. The compounds of the invention, together with a conventional adjuvant, carrier or diluent, may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
In addition to primates, such as humans, a variety of other mammals can be treated , according to the method of the present invention. For instance, mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated. However, the method can also be practiced in other species, such as avian species (e.g., chickens).
The subjects treated in the above method are mammals, including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species, and preferably a human being, male or female.
The term "effective amount" means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
As would be understood by those skilled in the art of treating viral infections, and particularly HIV infections, the term "treatment" does not necessarily mean that the viral infection is completely cured. The term "treatment" encompasses any reduction in the viral load and/or inhibition of replication in the subject being treated. The term "composition" as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts. By "pharmaceutically acceptable" it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
The terms "administration of and or "administering a" compound should be understood to mean providing a compound of the invention to the individual in need of treatment.
The pharmaceutical compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy. AU methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients. In general, the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation. In the pharmaceutical composition the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases. As used herein, the term "composition" is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
The pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension. This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butane diol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid find use in the preparation of injectables. The pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles. The combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects.
When other therapeutic agents are employed in combination with the compounds of the present invention they may be used for example in amounts as noted in the Physician Desk Reference (PDR) or as otherwise determined by one of ordinary skill in the art.
In the treatment or prevention of conditions which require HIV inhibition or HIV integrase enzyme inhibition an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses. Preferably, the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day. A suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0.5 to 5 or 5 to 50 mg/kg per day. For oral administration, the compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0. 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated. • The compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
It will be understood, however, that the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the host undergoing therapy. In order that the nature of the present invention may be more clearly understood preferred forms thereof will now be described by reference to the following non- limiting Examples.
1. ROUTES OF SYNTHESIS
1.1 For Core Formation:
Scheme 1: Preparation of the pyrimidinone bicyclic system
Figure imgf000024_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
The amino compound can be reacted as in scheme 1 with the fumarate derivative or suitable analogues of fumarate where for example the acetyl groups can be replaced by other suitable leaving groups such as tosyl or mesyl. The reaction can be carried out in a suitable solvent such as methanol, DME, DMA, DMSO, chloroform, THF or dioxane. The reaction can be heated or subject to microwave irradiation (see for example B. R. Roberts & C. R. Strauss, Ace. Chem. Res. 2005, 38, 653-661, "Toward Rapid, 'Green' Predictable Microwave-assisted Synthesis"). The reaction can be performed in the absence or presence of catalytic amounts of acid or base. 1.2 GENERIC SCHEMES: Azole formation
1.2.1 For Hl=l,3-oxazole and 1,3-thiazole:
Scheme 2: Preparation of the 1,3-oxazole and 1,3-thiazole via Gabriel or Robinson-Gabriel method
Figure imgf000025_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
Editor R.R. Gupta, Microwave-Assisted Synthesis of Heterocycles, Springer Berlin / Heidelberg. ISSN: 1861-9282 (Print) 1861-9290 (Online), 2006 Scheme 3: Preparation of the imidazole
Figure imgf000026_0001
Editor R.R. Gupta, Microwave- Assisted Synthesis of Heterocycles, Springer Berlin / Heidelberg. ISSN: 1861-9282 (Print) 1861-9290 (Online), 2006
Scheme 4: Preparation of the 1,3-thiazole via Hantzsch method
Figure imgf000026_0002
Wawzonek, 0., In; Heterocyclic Compounds, John Wiley and Sons, New York, 1975.
Tetrahedron Letters, 1994, 35(16), 2473-2476
Bioorg. Med. Chem. Chem. Lett 2003, 13(24), 4467-72. Scheme 5: Alternative preparation of the 1,3-thiazole
Figure imgf000027_0001
Tetrahedron. 2001, 57 (20), 4323-4336.
Org. Lett. 2003, 5(16), 2785-88; Synthesis. 1976, 696-697
Scheme 6: Alternative preparation of the 1,3-thiazole from aldehyde
Figure imgf000027_0002
1.2.2 For Hl=l,3,4-oxadiazole and l,3>4-oxathiazole:
Scheme 7: Preparation of the l,3?4-oxadiazole and 1,3,4-thiadiazole
Figure imgf000028_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
1.2.3 For Hl=l,2,4-oxadiazole
Scheme 8: Preparation of the 1,2,4-oxadiazoIe
Figure imgf000029_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa. Scheme 9: Preparation of the 1,2,4-oxadiazole (reversed roles)
Figure imgf000030_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa. 1.3 GENERIC SCHEMES : Preparation of ketoamines
Scheme 10: Preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
SOCI2
J O O
CNCH2CO2Et 'BuOK
R€ ° .HC,
Figure imgf000030_0002
Tetrahedron, 1994, 50 (21), 6287-6298 and Chem. Pharm. Bull. 1984, 32 (7), 2536- 2543
Examples: R = 3-F.4-C1; 3-CI,4-F
R = 4-F; 2,4-CI2 International Patent Application No. PCT/AU2007/001980 in the name of Avexa. R = 4-CI:. Chem. Pharm. Bull. 1984, 32 (7), 2536-2543
R = 2-NO2: Tetrahedron 1994, 50(21) 6287-6298
Scheme 11: Alternative preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000031_0001
US20040229909; 'Antiviral agent", Shionogi
Scheme 12: Alternative preparation of l-Amino-3~aryl-propan-2-one hyrdrochloride
Figure imgf000031_0002
Journal of Organic Chemistry (2003), 68(7), 2798-2802. (for ketoazide from chloroketone) Scheme 13: Alternative preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000032_0001
Scheme 14: Preparation of o-ester ketoamine
Figure imgf000032_0002
J Org. Chem. 1991, 56(24), 6933-6937 Scheme 15: Preparation of o-aminomethyl ketoamine
Figure imgf000033_0001
J Org. Chem. 1991, 56(24), 6933-6937
1.4 GENERIC SCHEMES: Derivatization
As scheme 15, but derivativisation is in a different position
Scheme 16: Derivatization of thiazole examples: Variation at position 3 (Metal mediated coupling)
Figure imgf000034_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
Scheme 17: Derivatization of thiazole examples: Variation at position 2
Figure imgf000035_0001
Scheme 18: Derivatization of position 2 of thiazole compounds
Figure imgf000036_0001
Scheme 19: Derivatization of the aromatic ring: metal mediated couplings with R2R3NH
Figure imgf000036_0002
Scheme 20: Derivatization of the aromatic ring: metal mediated couplings with R2XH
0 2
Figure imgf000037_0001
Scheme 21: Derivatization of the aromatic ring: metal mediated couplings with CO2
Figure imgf000037_0002
Scheme 22: Derivatization of the aromatic ring: metal mediated couplings with DMF
Figure imgf000038_0001
Scheme 23: Derivatization of the aromatic ring: amide formation in ortho position
Figure imgf000038_0002
Scheme 24: Derivatization of the aromatic ring: amine in ortho position
Figure imgf000039_0001
Scheme 25: Derivatization of thiazole by coupling G
Figure imgf000039_0002
2. SYNTHETIC EXAMPLES
HPLC conditions
All HPLC measurements were performed on a Varian Pro Star System.
Column:
Waters Symmetry® Cl 8 Column (Part No WAT045905) at 25° C, flow rate 1 mL/min, spectra measured at 254 nM
Buffers:
Buffer A: 100% acetonitrile, Buffer B: 0.1% aqueous TFA
Gradient: (linear gradient curve 6)
5 miπ 10 min 10min
10%A:90%B 10%A:90%B *- 100%A:0%B * 100%A:0%B
Example 1: Preparation of 6-benzyloxy-2-methyl~5-oxo-5H-thiazolo[3,2- a]pyrimidine-7-carboxylic acid
Figure imgf000040_0001
The titled compound was prepared by adapting methods described in Example 8.1-8.2 of PCT/AU2007/001980 using as a starting material 6-Hydroxy-2-methyl-5-oxo-5H- thiazolo[3,2-a] pyrimidine-7-carboxylic acid methyl ester prepared according to example l(a).
1H NMR (300 MHz, DMSO-rf6) 2.43 (d, J= 1.5 Hz5 3H)5 5.09 (s, 2H)5 7.31-7.45 (m,- 5H), 7.93 (q, J= 1.5 Hz5 IH)5 13.73 (s, IH)
MS (ESI") m/z 315 (M-I) Example l(a): Preparation of 6-Hydroxy-2-methyl-5-oxo-5H-thiazolo[3,2-a] pyrimidine-7-carboxylic acid methyl ester
Figure imgf000041_0001
2-Amino-5-methylthiazole (11.7 g, 103 mmol), DAF (29.5 g, 114 mmol) and p-TosOH (3.1 g, 16 mmol) were combined and heated at 120°C for 4 hours. After cooled down to room temperature, EA (20 ml) was added and sonicated for 2 minutes. The solids were collected by filtration, washed by cold methanol and dried in vacuo to afford the thiazole core (10 g, yield 40 %).
1H NMR (300 MHz, DMSO-d6) δ 2.41 (d, J= 1.5 Hz, 3H), 3.84 (s, 3H), 7.81 (q, J= 1.4 Hz, IH), 10.14-10.29 (brs, IH).
MS (ESI+) m/z 263 (M+23)
Example 2: Preparation of 6-benzyloxy-2-methyl-5-oxo-5H-thiazolo[3,2- a]pyrimidine-7-carboxyIic acid [3-(4-fluoro-phenyl)-2-oxo-propyl]-amide
Figure imgf000041_0002
To a solution of the product of example 1 (2.4mmol) in THF (10 ml) was added compound l-amino-3-(4-fluoro-phenyl)-propan-2-one hydrochloride (1.0 g, 4.9mmol), EDCI.HC1 (560mg, 2.9mmol), HOBt (400mg, 2.9mmol) and TEA (Ig, 9.9mmol) • successively at room temperature. The mixture was stirred overnight, after which saturated sodium bicarbonate was added and then extracted with ethyl acetate. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography to give the desired product. 1H NMR (300 MHz, DMSO-rf6) 2.45 (d, J= 1.5 Hz5 3H)5 3.84 (s, 2H)5 4.19 (d5 J= 5.9 Hz5 2H)5 5.09 (s, 2H)5 7.14 (t, J= 9.0 Hz5 2H), 7.22 (dd, J= 5.6, 8.8 Hz5 2H)5 7.28-7.38 (m, 3H), 7.48 (dd, J= 2.I5 7.6 Hz5 2H)5 7.93 (q, J= 1.5 Hz5 IH)5 8.74 (t, J= 5.7 Hz, IH)
MS (ESI+) m/z 464 (M-I)
Example 3: Preparation of 6-benzyIoxy-7-[5-(4-fIuoro-benzyl)-thiazol-2-yl]-2- methyl-thiazolo [3,2-a] pyrimidin-5-one
Figure imgf000042_0001
The product from example 1 (0.23 mmol) and Lawensson's reagent (120 mg, 0.3 mmol) were mixed with toluene (10 mL) and refluxed for 12 h. The reaction mixture was concentrated in vacuo and flash chromatography afforded the desired thiazole product.
1H NMR (300 MHz5 DMSO-d6) 2.44 (d, J= 1.5 Hz5 3H), 4.25 (s, 2H)5 5.18 (s, 2H)5 7.17 (t, J= 8.9 Hz, 2H), 7.30-7.40 (m, 5H), 7.46 -7.52 (m, 2H)5 7.87 (s, IH)5 7.89 (q, J= 1.6 Hz5 IH).
MS (ESI+) m/z 486 (M+23)
Example 4: Preparation of 7-[5-(4-Fluoro-benzyl)-thiazoI-2-yl]-6-hydroxy-2- methyI-thiazolo[3,2-a]pyrimidin-5-one
Figure imgf000043_0001
To a solution of the product of example 3 (0.135mmol) in CH2Cl2 (4 ml) was added FeCl3 (66 mg, 0.402 mmol) at room temperature. The mixture was stirred at room temperature for 2 hours, after which CH2Cl2 was evaporated under reduced pressure and ethyl acetate (30 ml) was added. Then the mixture was washed by IN HCl (10 ml), H2O (10ml) and brine (10 ml) successively, dried over Na2SO4 and concentrated into about 1 ml. The resulting solids were collected by filtration and washed with cold ethyl acetate (2-3ml) to give the desired product
1H NMR (300 MHz, DMSO-d6) 2.40 (d, J= 1.5 Hz, 3H), 4.29 (s, 2H), 7.17 (t, J= 8.8 Hz, 2H), 7.38 (dd, J= 5.6, 8.6 Hz, 2H), 7.81 (q, J= 1.4 Hz, IH), 7.91 (s, IH), 11.34 (s, IH)
MS (ESI+) m/z 396 (M+23)
HPLC 94.2 %
Example 5: Preparation of 6-benzyIoxy-2-methyl-5-oxo-5H-thiazoIo[3,2- ba]pyrimidine-7-carboxylic acid [3-(4-chloro-phenyl)-2-oxo-propyl]-amide
Figure imgf000044_0001
Adapted from example 2 using the product of example 1 and l-amino-3-(4-chloro- phenyl)-propan-2-one hydrochloride.
1H NMR (300 MHz, DMSO-d6) 2.45 (d, J= 1.5 Hz, 3H), 3.86 (s, 2H), 4.19 (d, J= 5.7 Hz3 2H), 5.09 (s, 2H), 7.22 (d, J= 8.5 Hz, 2H), 7.29-7.41 (m, 5H)5 7.48 (dd, J= 2.2, 7.5 Hz, 2H), 7.93 (q, J= 1.5 Hz, IH), 8.75 (t, J= 5.7 Hz, IH)
MS (EST) m/z 480 (M-I)
Example 6 : Preparation of 6-benzyloxy-7- [5-(4-chloro-benzyl)-thiazol-2-yl] -2- methyl-thiazolo [3 ,2-a] py rimidin-5-one
Figure imgf000044_0002
Adapted from example 3 using the product of example 5
1H NMR (300 MHz, DMSO-d6) 2.44 (d, J= 1.5 Hz, 3H), 4.26 (s, 2H), 5.18 (s, 2H), 7.30-7.36 (m, 5H), 7.41 (d, J= 8.8 Hz, 2H), 7.45-7.53 (m, 2H), 7.87-7.92 (m, 2H)
MS (ESI+) m/z 502 (M+23) Example 7: Preparation of 7-[5-(4-chloro~benzyI)-thiazol-2-yl]-6-hydroxy-2- methyl-thiazolo[3,2-a]pyrimidin-5-one
Figure imgf000045_0001
Adapted from example 4 using the product of example 6.
1H NMR (300 MHz, DMSO-d6) 2.40 (d, J= 1.5 Hz5 3H)5 4.30 (s, 2H)5 7.33-7.44 (m, 4H)5 7.82 (q, J= 1.5 Hz5 IH), 7.92 (t, J= 0.8 Hz, IH), 11.33 (s, IH)
MS (ESI+) m/z 390 (M+l)
HPLC 93.3 %
Example 8: Preparation of 6-benzyIoxy-2-methyl-5-oxo-5H-thiazolo[3,2- a]pyrimidine-7-carboxylic acid [3-(3,4-dichloro-phenyl)-2-oxo-propyI] -amide
Figure imgf000045_0002
Adapted from example 2 using the product of example 1 and l-amino-3-(3,4-dichloro- phenyl)-propan-2-one hydrochloride.
1H NMR (300 MHz5 DMSO-d6) 2.45 (d, J= 1.4 Hz5 3H), 3.89 (s, 2H)5 4.20 (d, J= 5.6 Hz5 2H)5 5.09 (s, 2H), 7.18 (dd, J= 2.1, 8.1Hz, IH), 7.28-7.38 (m, 3H)5 7.44-7.52 (m, 3H), 7.57 (d, J= 8.3 Hz, IH), 7.93 (q, J= 1.5 Hz, IH), 8.77 (t, J= 5.6 Hz, IH).
MS (ESI") m/z 514 (M-I) Example 9: Preparation of 6-benzyloxy-7-[5-(3,4-dichIoro-benzyl)-thiazol-2-yI]-2- methyl-thiazolo [3,2-a] py rimidin-5-one
Figure imgf000046_0001
Adapted from example 3 using the product of example 8
1H NMR (300 MHz, DMSO-d6) 2.44 (d, J= 1.5 Hz, 3H), 4.28 (s, 2H), 5.18 (s, 2H), 7.27-7.37 (m, 4H), 7.45-7.51 (m, 2H), 7.59-7.63 (m, 2H), 7.89 (q, J= 1.4 Hz, IH), 7.90 (t, J= 0.8 Hz, IH).
MS (ESI+) m/z 536 (M+23)
Example 10: Preparation of 7-[5-(3,4-dichloro-benzyl)-thiazol-2-yI]-6-hydroxy-2- methyl-thiazolo [3,2-a] pyrimidin-5-one
Figure imgf000046_0002
Adapted from example 4 using the product of example 9
1H NMR (300 MHz, DMS(W5) 2.41 (d, J= 1.5 Hz, 3H), 4.33 (s, 2H), 7.35 (dd, J= 1.9, 8.2 Hz, IH), 7.61 (d, J= 8.2 Hz, IH), 7.66 (d, J= 1.9 Hz, IH), 7.82 (q, J= 1.4 Hz, IH), 7.95 (s, IH), 11.32 (s, IH)
MS (ESI+) m/z 424 (M+l)
HPLC 95.1 % Example 11: Preparation of 6-benzyloxy-7-[5-(4-chloro-3-fluoro-benzyl)-thiazoI-2- yl]-2-methyl-thiazoIo[3,2-a]pyrimidm-5-one
Figure imgf000047_0001
Adapted from example 2 using the product of example 1 and example 18.
1H NMR (300 MHz, DMSO-d6) 2.45 (d, J= 1.5 Hz, 3H), 3.89 (s, 2H), 4.20 (d, J= 5.8 Hz, 2H), 5.09 (s, 2H), 7.06 (dd, J= 1.3, 8.3 Hz, IH), 7.25 (dd, J= 1.9, 10.5 Hz, IH), 7.29-7.39 (m, 3H), 7.44-7.56 (m, 3H), 7.93 (q, J= 1.6 Hz, IH), 8.78 (t, J= 5.6 Hz, IH).
MS (ESI") m/z 498 (M-I)
Example 12: Preparation of 6-benzyloxy-2-methyl-5-oxo-5H-thiazoIo[3,2- a]pyrimidine-7-carboxylic acid [3-(4-chloro-3-fluoro-phenyl)-2-oxo-propyI] -amide
Figure imgf000047_0002
Adapted from example 3 using the product of example 11
1H NMR (300 MHz, DMSO-d6) 2.44 (d, J= 1.3 Hz, 3H), 4.29 (s, 2H), 5.19 (s, 2H), 7.18 (dd, J= 1.6, 8.4 Hz, IH), 7.30-7.36 (m, 3H)5 7.40 (dd, J= 1.8, 10.4 Hz, IH), 7.45- 7.51 (m, 2H), 7.56 (t, J= 8.1 Hz, IH), 7.87-7.92 (m, 2H)
MS (ESI+) m/z 520 (M+23) Example 13: Preparation of 7-[5-(4-chloro-3-fluoro-benzyl)-thiazol-2-yl]-6- hydroxy-2-methyl-thiazolo[3,2-a]pyrimidin-5-one
Figure imgf000048_0001
Adapted from example 4 using the product of example 12
1H NMR (300 MHz, DMSO-d6) 2.41 (d, J= 1.5 Hz, 3H), 4.33 (s, 2H), 7.22 (dd, J= 1.9, 8.0 Hz, IH), 7.44 (dd, J= 2.0 , 10.6 Hz, IH), 7.57 (t, J= 8.1 Hz, IH), 7.82 (q, J= 1.5 Hz, IH), 7.95 (s, IH), 11.33 (s, lH).
MS (ESI+) m/z 430 (M+23)
HPLC 94.6 %
Example 14: Preparation of (4-chIoro-3-fluoro-phenyl)-acetonitrile
Figure imgf000048_0002
To a boiling solution of 4-chloro-3-flurorobenzyl bromide (1Og, 44.8mmol) in absolute ethanol (40 ml) was added a solution of potassium cyanide (2.9g, 44.8mmol) in water (6ml). The mixture was refluxed for 1.5 hours, then most of the ethanol was distilled off under reduced pressure and the cooled residue poured into water. The solution was extracted three times with ether. The combined organic layers were washed with brine, dried and concentrated into dryness to give the titled product (7.8g, 93% yield) 1H NMR (300 MHz, DMSO-d6) 4.09 (s, 2H), 7.25 (ddd, J= 0.8, 2.0, 8.2 Hz, IH), 7.43 (dd, J= 2.0, 10.0 Hz, IH), 7.64 (t, J =8.2 Hz, IH).
MS (ESI") m/z 168 (M-I)
Example 15: Preparation of (4-chloro-3-fluoro-phenyl)-acetic acid
Figure imgf000049_0001
A mixture of the product of example 14 (7.8g, 0.046 mol), water (7.5 ml), concentrated sulfuric acid (7.5ml) and acetic acid (7.5ml) was heated at reflux for 2 hours . After being cooled to room temperature, the mixture was poured into ice- water. The resulting solids were collected by filtration and washed by diethyl ether to give the titled product (6.8g, 79%)
1H NMR (300 MHz, DMSO-d6) 3.64 (s, 2H), 7.14 (ddd, J= 0.6, 2.1, 8.2 Hz, IH), 7.34 (dd, J= 2.1, 10.6 Hz, IH), 7.52 (t, J=8.1 Hz, IH).
MS (ESI") m/z 187 (M-I)
Example 16: Preparation of (4-chloro-3-fluoro-phenyl)-acetyl chloride
Figure imgf000049_0002
A mixture of the product of example 15 (4.9g, 26mmol) with thionyl chloride (50 ml) was refluxed for 3 hours. Then thionyl chloride was removed under reduced pressure. The residue was redistilled under reduced pressure to give crude titled acyl chloride, which was used directly in the next step reaction. (3.2g, 60%yield) Example 17: Preparation of 5-(4-chloro-3-fluoro-benzyl)-oxazole-4-carboxylic acid ethyl ester OEt
Figure imgf000050_0001
To a solution of potassium tert-butoxide (3.5g, 31.25mmol) in THF (50 ml) was added ethyl isocyanoacetate (3.5g, 31.25mmol) dropwise at 50C. After stirring for 45 minutes, the product of example 16 (3.2g, 15.5mmol) was added dropwise. Then the mixture was stirred overnight at room temperature. The reaction mixture was filtered and the filtrate was concentrated. The residue was purified by column chromatography (PE/EA=5/1) to give the titled compound (2.5g, 67.7yield)
1H NMR (300 MHz, DMSO-d6) 1.29 (t, J= 7.1 Hz, 3H), 4.30 (q, J= 7.1 Hz, 2H), 4.41 (s, 2H)5 7.11 (ddd, J= 0.6, 2.1, 8.3 Hz, IH), 7.34 (dd, J= 2.0, 10.4 Hz, IH), 7.54 (t, J= 8.1 Hz, IH), 8.40 (s, IH).
MS (ESI+) m/z 306 (M+23)
Example 18: Preparation of l-amino-3-(4-chloro-3-fluoro-phenyl)-propan-2-one hydrochloride
Figure imgf000050_0002
A mixture of the product of example 17 (2.5g, 10.53mmol) with hydrochloride acid (6 mol/1, 30 ml) was refluxed for about 3hours and then cooled to room temperature. The solids were collected by filtration, washed with EA and dried to give the titled product (1.7g, 81%)
1H NMR (300 MHz, DMSO-d6) 3.96 (s, 2H), 4.03 (s, 2H), 7.10 (dd, J= 1.9, 8.2 Hz, IH), 7.29 (d, J= 1.9, 10.4 Hz, IH), 7.56 (t, J= 8.1 Hz, IH), 8.15-8.42 (brs, 3H). MS (ESf) m/z 202 (M+l)
Example 19: Preparation of 5-fluoro-2,N,N-trimethyI-benzenesuIfonamide
Figure imgf000051_0001
A mixture of 5-fluoro-2-methylbenzene sulfonyl chloride (2.1 niL, 14.3 mmol) in THF (18 mL) and 2 M dimethylamine in methnol (18 mL), was stirred at room temperature for 0.5h. The resulting mixture was concentrated under reduced pressure to give a crude product as a mixture of white solid and colourless oil. The crude product was purified by column (30% EtOAc in Hexane) to give the titled compound as a colourless oil (3.09 g, 99% yield).
Example 20: Preparation of 2-bromomethyl-5-fluoro-N,N-dimethyl- benzenesulfonamide
Figure imgf000051_0002
To a solution of the product of example 19 (3 g, 13.8 mmol) in DCE (40 mL), was added n-bromosuccinamide (2.8g, 15.19 mmol) and stirred at 8O0C for 5 min before AIBN (300mg, O.Olόmmol) was added and heated at 80°C for 5 h (95% conversion). The reaction mixture was concentrated under reduced pressure to give a crude product as a yellow solid. The crude product was purified by column (10-20% ethylacetate in hexane) to give the titled product. (50% yield)
MS (ESI+) m/z 296, 298 Br [M+H1] Example 21: Preparation of 2-cyanomethyl-5-fluoro-N,N-dimethyI- benzenesulfonamide
Figure imgf000052_0001
A mixture of the product of example 20 (~90% pure, 729mg, 2.46 mmol) in a mixture of DMF:H2O (3mL:2mL) and sodium cyanide (362mg, 7.4 mmol) was stirred at room temperature overnight. The resulting mixture was quenched with saturated NaHCO3 (12 mL) and extracted with ethylacetate (3x30 mL). The extracts were combined and washed with saturated NaCl (2x30 mL) and water (2x30 mL). The organic layer was separated, dried over anhydrous MgSO4 and concentrated under reduced pressure to give the titled product as a colourless oil (503mg, 85% yield).
1HNMR CDCl3, 300 MHz : δ 2.86 (s, 6H, -N(CH3)2), 4.19 (s, 2H, -CH2C≡N), 7.35 (m, IH, ArH), 7.69 (m, 2H, ArH).
MS (ESI+) m/z 243 [M+H+], 265 [M+Na+]
Example 22: Preparation of (2-dimethylsulfamoyl-4-fluoro-phenyl)-acetic acid
Figure imgf000052_0002
A solution of the product of example 33 (300mg, 1.24mmol) in 4M HCl in dioxane (14 mL) was heated at 40°C for 2h. The reaction mixture was concentrated under reduced pressure to give the title compound as a yellow oil and was used without further purification.
MS (ESI+) m/z 261 [M+] Example 23: Preparation of l-chloro-3-(4-fluoro-phenyI)-propan-2-one
Figure imgf000053_0001
1. To a chilled (00C) solution of 4-fluoro-phenylacetyl chloride (14.07 mmol, 2.43g) in diethylether (15mL), was added a cold solution of freshly distilled diazomethane in diethylether (16 mmol) and stirred at O0C for 15 min and then at room temperature for 15 min. The resulting mixture of diazoketone was used in the next step without further purification (confirmed by mass spec).
2. One third of the above diazoketone solution (in diethyl ether) was cooled to -3O0C and 4M HCl in dioxane (3 mL) was added and stirred at -3O0C for 0.5h and then at room temperature for 0.5h. The reaction mixture was quenched with water (20 mL) and extracted with ethyl acetate (30 mL). The organic layer was separated and dried over anhydrous MgSO4 and concentrated under reduced pressure to give a crude product as slightly yellow oil. The crude product was purified by column chromatography (15-20 % EtOAc in hexane) to give the titled compound with R/= 0.016 (200mg, 19% yield)
1H NMR: CDCl3, 300 MHz : δ 3.88 (s, 2H, -CH2Cl), 4.11 (s, 2H, -CH2(C=O)), 7.04 (t, J= 8.7 Hz, 2H5 ArH), 7.20 (t, dd= 4.8, 8.8 Hz, 2H, ArH).
Example 24: Preparation of 2-[3-(4-fluoro-phenyl)-2-oxo-propyl]-isoindole-l,3- dione
Figure imgf000053_0002
To a solution of the product of example 23 (85 mg, 0.45mmol) in DMF (1 mL), under a nitrogen atmosphere, was added potassium salt of phthalamide (96mg, 0.52 mmol). The resulting mixture was stirred at room temperature for Ih. The reaction mixture was quenched with a mixture of ice-water and filtered. The slightly pink solid was washed with water to give the titled compound as a white product (79 mg, 62% yield). 1H NMR CDCl3, 300 MHz : δ 3.82 (s, 2H, -CH2N-), 4.51 (s, 2H, -CH2(C=O)), 7.04 (m, 2H, ArHF), 7.23 (m, 2H, ArHF), 7.74 (m, 2H5 ArH), 7.86 (m, 2H, ArH).
MS (ESI+) m/z 298 [M+H+]
3. BIOLOGICAL EXAMPLES
Activity of selected examples against wild type and mutant integrases and HIV-s
PhenoScreen assay
Monogram Bioscience' PhenoScreen assay allows the evaluation of integrase inhibitors for activity against a variety of HIV variants. The assay uses virus generated from 2 DNA constructs; one containing the HIV LTR, gag and pol regions, as well as a luciferase reporter gene in place of the viral envelope genes, and a second DNA construct containing the amphotrophic murine leukemia virus (A-MLV) envelope gene required to pseudotype virions and render them capable of entry into a target cell. Viruses generated using these constructs by transfection into a producer cell line such as 293 T are capable of one-round of infection only. Successful integration events are directly proportional to the levels of luciferase expression 48h after infection.
The viral variants chosen by Avexa Ltd to screen their in-house integration inhibitors against consist of mutations within the viral integrase enzyme known to confer resistance to a number of known integration inhibitors published in the literature. In particular, the viral variants containing the Q148H/G140S double mutation in integrase, and the Nl 55H/E92Q double mutation in integrase, represent two of the more common viruses identified to arise in patients that are failing treatment with Isentress (Raltegravir, MK-0518).
In-house IN-Screen Assay
Similar to the PhenoScreen assay, Avexa's IN-Screen assay relies on reporter gene expression levels 58h following infection. However, in contrast to the PhenoScreen assay developed at Monogram Biosciences, Avexa's assay uses full-length, replication competent HIV generated by transfection of 293T cells, and target cells stably transfected with a construct containing B-galactosidase under the control of a TAT- dependent HIV LTR promoter. Upon virus infection (at a multiplicity of infection of 0.1) and successful integration, the viral Tat protein is produced from the newly integrated provirus which is then able to trans-activate expression of the B- galactosidase reporter gene. B-galactosidase expression is then measured in the cell population using the commercially available GalactoStar kit (Applied Biosystems) according to the manufacturers instructions.
Mutant enzymes:
HIV integrase was mutated within a shuttle vector (pGEM) containing the majority of the HIV-I gag and pol sequence using site directed mutagenesis to generate integrase sequences that have been published as conferring resistance to published integrase inhibitors. These include, but are not limited to, mutations such as Q148K. The integrase coding region was then subject to PCR and cloned into a bacterial expression vector. The specific introduction of desired mutation(s) was confirmed by sequence analysis. Proteins were expressed, purified and used in strand transfer assays.
Strand transfer assay (enzyme assay):
A strand transfer assay procedure similar to that published (Ovenden et al.
Phytochemistry. 2004 Dec;65(24):3255-9.) is used. Briefly, 400ng of the enzyme, wild type or drug resistant mutant, is mixed with the compound to be tested and incubated with 3OnM substrate DNA. The substrate DNA is designed to mimic HIV DNA termini that has undergone 3 'end processing, and consists of the annealed U5 LTR sequence oligonucleotides tagged with Digoxigenin (DIG; 5'-
ACTGCTAGAGATTTTCCACACTGACTAAAAGGGTC-DIG-S') or biotin (5'-Bio-
GACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA-3') so that each substrate has either a DIG or Bio tag on opposite strands. Reactions are carried out for lhr at 37°C.
Products generated as a result of strand transfer activity are bound to streptavidin plates and detected using anti-DIG-alkaline phosphatase conjugate and p-nitro phenyl phosphate substrate. Both the Phenosense assay and the Enzyme assay give substantially the same activity values for any particular compound and enzyme pair. The activity of one compound in one assay can therefore be directly compared to the activity of a second compound in the other assay.
Table 1: Activity of selected examples against wild type and mutant integrases and HIV-s
Figure imgf000056_0001
Figure imgf000057_0001
Comparative Example la
Figure imgf000057_0002
Comparative Example 2b
+++
Comparative Example 3c
+++
Comparative Example 4d
Figure imgf000057_0003
++
Comparative Example 5e
Figure imgf000058_0001
indicates value between 0.001 μM and lμM
++ indicates value between lμM and lOμM
+ indicates value greater than lOμM
a Example 17.4 of International Patent Application No. PCT/AU2007/001980
b Example 17.3 of International Patent Application No. PCT/AU2007/001980
c Example 17.7.6 of International Patent Application No. PCT/AU2007/001980
d Example 17.7.2 of International Patent Application No. PCT/AU2007/001980
e Example 17.7.1 of International Patent Application No. PCT/AU2007/001980
f Example 17.5 of International Patent Application No. PCT/AU2007/001980
g Example 17.6 of International Patent Application No. PCT/AU2007/001980
The results above indicate that the compounds of the present invention have superior activity profiles against mutant HIV integrases than analogues in International Patent Application No. PCT/AU2007/001980 in the name of AvexaXtd which are not of the present invention. Throughout this specification the word "comprise", or variations such as "comprises" or "comprising", will be understood to imply the inclusion of a stated element, integer or step, or group of elements, integers or steps, but not the exclusion of any other element, integer or step, or group of elements, integers or steps.
AU publications mentioned in this specification are herein incorporated by reference. Any discussion of documents, acts, materials, devices, articles or the like which has . been included in the present specification is solely for the purpose of providing a context for the present invention. It is not to be taken as an admission that any or all of these matters form part of the prior art base or were common general knowledge in the field relevant to the present invention as it existed in Australia or elsewhere before the priority date of each claim of this application.
It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the specific embodiments without departing from the spirit or scope of the invention as broadly described. The present embodiments are, therefore, to be considered in all respects as illustrative and not restrictive.

Claims

1. A compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000060_0001
L1-R1 is 0-2 substituents wherein:
each L1 is independently absent or is selected from the group consisting of Z, Ci.3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, NH;
each R1 is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIl)CyINR3R4, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SO2C1.10alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, C1-10alkyl, C1-10NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C1-4alkyl, CO2C1-4alkyl, NR5R6; C1-4alkylNR5R6;
R5 and R6 are each independently selected from the group consisting of H and C1-4alkyl or R5 and R6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C1-4alkyl;
when R1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from Ci-ioalkyl, -O-CMoalkyl, CnOaIkY-NR3R4, -0-C1-1OaIkYlNR3R4, halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
H1 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z, C1-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and
NH;
each R7 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Ci-1OaIkYlNR3R4, halo, NR3R4, alkylaryl, S(O)N3R4, SO2NR3R4, SChCi-ioalkyl, and Cs.iocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8R8-
each ofR8 and R8- is independently selected from the group consisting of H and CH3, preferably H; H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is group consisting of Z, C^alkylene, >C=Z,
-CZ2-, -C(=Z)C1-3alkylene, -CZ2-C1.3alkylene, -C1-3alkylene-C(=Z)-5 -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R9 is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1.10alkylNR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)N3R4, SO2NR3R4,
Figure imgf000062_0001
and C5-iocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
2. A compound according to claim 1 wherein L1 is -CH2- and R1 is N-piperidine, N-piperazine, N, N'-methyl-piperazine, or N-morpholino.
3. A compound according to claim 1 or claim 2 wherein H1 is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, imidazole, triazole, tetrazole, and thiazole.
4. A compound according to any one of claims 1 to 3 wherein H1 is 2,5-substituted thiazole.
5. A compound according to any one of claims 1 to 4 wherein H2 is phenyl.
6. A compound according to any one of claims 1 to 6 wherein L3-R9 is at least 2 substituents wherein the first L3-R9 is halo and in the second L3-R9> L3 is absent or is selected from >G=O and R9 is selected from the group consisting of halo, NR3R4 and SO2NR3R4.
7. A compound according to any one of claims 1 to 6 wherein NR3R4, where it occurs in L3-R9, is morpholino, a five-membered cyclic sulphonamide (such as isothiazolidine) or a six membered cyclic sulphonamide.
8. A compound according to any one of claims 1 to 5 wherein L3-R9 is one substituent and is halo.
9. A compound according to claim 1 selected from the group consisting of:
Figure imgf000063_0001
Figure imgf000064_0001
Figure imgf000065_0001
Figure imgf000066_0001
Figure imgf000067_0001
5-Fluoro-2- {2-[6-hydroxy-2-(4- methyl-piperazin- 1 -ylmethyl)-5-oxo-
5H-thiazolo[3,2-a]pyrimidin-7-yl]- thiazol-5-ylmethyl}-N,N-dimethyl- benzenesulfonamide
7-{5-[2-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-4-fluoro-benzyl]- thiazol-2-yl}-6-hydroxy-2-(4-methyl- piperazin- 1 -ylmethyl)-thiazolo [3,2- a]pyrimidin-5-one
7-{5-[4-Fluoro-2-(5-methyl-l,l- dioxo- 1 lambda* 6 * -
[ 1 ,2,5]thiadiazolidin-2-yl)-benzyl] - thiazol-2-yl}-6-hydroxy-2-(4-methyl- piperazin- 1 -ylmethyl)-thiazolo [3,2- a]pyrimidin-5 -one
N-(5-Fluoro-2-{2-[6-hydroxy-2-(4- methyl-piperazin- 1 -ylmethyl)-5-oxo-
5H-thiazolo[3,2-a]pyrimidin-7-yl]- thiazol-5-ylmethyl}-phenyl)-N,N',N'- trimethyl-oxalamide
Figure imgf000068_0001
Figure imgf000069_0001
10. A method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound according to any one of claims 1 to 9 or a pharmaceutically acceptable derivative, salt or prodrug thereof.
11. The use of a compound according to any one of claims 1 to 9 or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
12. The method according to claim 10 or the use according to claim 11 wherein the viral infection is a HIV or SIV infection.
13. The method or use according to claim 12 wherein the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir.
14. The method or use according to claim 12 or claim 13 wherein the viral strain comprises HIV integrase enzyme containing the Q148H/G140S double mutation,
N 155H/E92Q double mutation, the F 121 Y/T 124K double mutation or the Q148K/G140A/E138A triple mutation.
15. A pharmaceutical composition comprising a compound according to any one of claims 1 to 10 and a pharmaceutically acceptable carrier, diluent or excipient.
PCT/AU2009/000856 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof Ceased WO2010000030A1 (en)

Priority Applications (6)

Application Number Priority Date Filing Date Title
CA2729649A CA2729649A1 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof
EP09771847.2A EP2247601B1 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof
US12/733,994 US8426405B2 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof
ES09771847T ES2408654T3 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and their use
PL09771847T PL2247601T3 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof
JP2011515026A JP5539978B2 (en) 2008-07-02 2009-07-02 Thiazopyrimidinone and uses thereof

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
AU2008903405 2008-07-02
AU2008903405A AU2008903405A0 (en) 2008-07-02 Thiazopyrimidinones and uses thereof
US16193109P 2009-03-20 2009-03-20
US61/161,931 2009-03-20

Publications (1)

Publication Number Publication Date
WO2010000030A1 true WO2010000030A1 (en) 2010-01-07

Family

ID=41465415

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/AU2009/000856 Ceased WO2010000030A1 (en) 2008-07-02 2009-07-02 Thiazopyrimidinones and uses thereof

Country Status (7)

Country Link
US (1) US8426405B2 (en)
EP (1) EP2247601B1 (en)
JP (1) JP5539978B2 (en)
CA (1) CA2729649A1 (en)
ES (1) ES2408654T3 (en)
PL (1) PL2247601T3 (en)
WO (1) WO2010000030A1 (en)

Cited By (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8206929B2 (en) 2009-01-07 2012-06-26 Roche Molecular Systems, Inc. Nucleic acid amplification with allele-specific suppression of sequence variants
EP2675924A4 (en) * 2011-02-17 2015-05-20 Us Government PCR REAL-TIME PCR MUTATION TESTS TO DETECT HIV-1 RESISTANCE TO ANTIVIRAL DRUGS
US9476103B2 (en) 2004-06-07 2016-10-25 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Real-time PCR point mutation assays for detecting HIV-1 resistance to antiviral drugs
US10065950B2 (en) 2010-02-26 2018-09-04 Japan Tobacco Inc. Substituted thiazoles as HIV integrase inhibitors
US11084832B2 (en) 2019-03-22 2021-08-10 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and their pharmaceutical use
US11613546B2 (en) 2021-01-19 2023-03-28 Gilead Sciences, Inc. Substituted pyridotriazine compounds and uses thereof
US11697652B2 (en) 2020-02-24 2023-07-11 Gilead Sciences, Inc. Tetracyclic compounds and uses thereof
US11725010B2 (en) 2019-12-02 2023-08-15 Storm Therapeutics Limited Polyheterocyclic compounds as METTL3 inhibitors
US12024528B2 (en) 2022-04-06 2024-07-02 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and uses thereof
US12421235B2 (en) 2020-09-30 2025-09-23 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and uses thereof

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003035077A1 (en) * 2001-10-26 2003-05-01 Istituto Di Ricerche Di Biologia Molecolare P. Angeletti Spa N-substituted hydroxypyrimidinone carboxamide inhibitors of hiv integrase
US20040229909A1 (en) 2001-08-10 2004-11-18 Ryuichi Kiyama Antiviral agent
WO2008077188A1 (en) * 2006-12-22 2008-07-03 Avexa Limited Bicyclic pyrimidinones and uses thereof

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU551718B2 (en) * 1981-07-15 1986-05-08 Farmitalia Carlo Erba S.P.A. Substituted thiazolo(3,2-alpha)pyrimidines
ZA824797B (en) * 1981-07-15 1983-04-27 Erba Farmitalia Substituted thiazolo(3,2-a)pyrimidines and process for their preparation
TW200526635A (en) * 2003-12-22 2005-08-16 Shionogi & Co Hydroxypyrimidinone derivative having HIV integrase inhibitory activity
CN102143962B (en) * 2008-07-02 2015-03-11 爱维艾珂瑟有限公司 Compounds having antiviral properties
EP2291377B1 (en) * 2008-07-02 2015-02-18 Avexa Limited Imidazopyrimidinones and uses thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040229909A1 (en) 2001-08-10 2004-11-18 Ryuichi Kiyama Antiviral agent
WO2003035077A1 (en) * 2001-10-26 2003-05-01 Istituto Di Ricerche Di Biologia Molecolare P. Angeletti Spa N-substituted hydroxypyrimidinone carboxamide inhibitors of hiv integrase
WO2008077188A1 (en) * 2006-12-22 2008-07-03 Avexa Limited Bicyclic pyrimidinones and uses thereof

Non-Patent Citations (16)

* Cited by examiner, † Cited by third party
Title
"Reinvestigation of a modified Hantzsch Thiazole synthesis", TETRAHEDRON LETTERS, vol. 35, no. 16, 18 April 1994 (1994-04-18), pages 2473 - 2476
B. R. ROBERTS; C. R. STRAUSS: "Toward Rapid "Green", Predictable Microwave-Assisted Synthesis", ACC. CHEM. RES., vol. 38, 2005, pages 653 - 661
BIOORG. MED. CHEM. CHEM. LETT., vol. 13, no. 24, 2003, pages 4467 - 72
CHEM. PHARM. BULL., vol. 32, no. 7, 1984, pages 2536 - 2543
GREENE T., WUTS P.: "Protective Groups in Organic Synthesis", 1999, THIRD EDITION, WILEY INTERSCIENCE
J. ORG. CHEM., vol. 56, no. 24, 1991, pages 6933 - 6937
JOURNAL OF ORGANIC CHEMISTRY, vol. 68, no. 7, 2003, pages 2798 - 2802
ORG. LETT., vol. 5, no. 16, 2003, pages 2785 - 88
OVENDEN ET AL., PHYTOCHEMISTRY, vol. 65, no. 24, December 2004 (2004-12-01), pages 3255 - 9
P.H.STAHL, C.G.WERMUTH: "Handbook of Pharmaceutical salts", 2002, WILEY-VCH
R.R. GUPTA: "Microwave-Assisted Synthesis of Heterocycles", 2006, SPRINGER, BERLIN / HEIDELBERG, ISSN: 1861-9282
See also references of EP2247601A4
SYNTHESIS, 1976, pages 696 - 697
TETRAHEDRON, vol. 50, no. 21, 1994, pages 6287 - 6298
TETRAHEDRON, vol. 57, no. 20, 2001, pages 4323 - 4336
WAWZONEK, O.,: "Heterocyclic Compounds", 1975, JOHN WILEY AND SONS, NEW YORK

Cited By (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9476103B2 (en) 2004-06-07 2016-10-25 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Real-time PCR point mutation assays for detecting HIV-1 resistance to antiviral drugs
US10519518B2 (en) 2004-06-07 2019-12-31 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Real-time PCR point mutation assays for detecting HIV-1 resistance to antiviral drugs
US8206929B2 (en) 2009-01-07 2012-06-26 Roche Molecular Systems, Inc. Nucleic acid amplification with allele-specific suppression of sequence variants
US10065950B2 (en) 2010-02-26 2018-09-04 Japan Tobacco Inc. Substituted thiazoles as HIV integrase inhibitors
EP2675924A4 (en) * 2011-02-17 2015-05-20 Us Government PCR REAL-TIME PCR MUTATION TESTS TO DETECT HIV-1 RESISTANCE TO ANTIVIRAL DRUGS
US9879317B2 (en) 2011-02-17 2018-01-30 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services, Centers For Disease Control And Prevention Real-time PCR point mutation assays for detecting HIV-1 resistance to antiviral drugs
US10793902B2 (en) 2011-02-17 2020-10-06 The Government Of The United States Of America, As Represented By The Secretary, Department Of Health And Human Services, Centers For Disease Control And Prevention Real-time PCR point mutation assays for detecting HIV-1 resistance to antiviral drugs
US11084832B2 (en) 2019-03-22 2021-08-10 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and their pharmaceutical use
US11548902B1 (en) 2019-03-22 2023-01-10 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and their pharmaceutical use
US12227520B2 (en) 2019-03-22 2025-02-18 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and their pharmaceutical use
US12195458B2 (en) 2019-12-02 2025-01-14 Storm Therapeutics Limited Polyheterocyclic compounds as METTL3 inhibitors
US11725010B2 (en) 2019-12-02 2023-08-15 Storm Therapeutics Limited Polyheterocyclic compounds as METTL3 inhibitors
US11697652B2 (en) 2020-02-24 2023-07-11 Gilead Sciences, Inc. Tetracyclic compounds and uses thereof
US12122776B2 (en) 2020-02-24 2024-10-22 Gilead Sciences, Inc. Tetracyclic compounds and uses thereof
US12421235B2 (en) 2020-09-30 2025-09-23 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and uses thereof
US12187734B2 (en) 2021-01-19 2025-01-07 Gilead Sciences, Inc. Substituted pyridotriazine compounds and uses thereof
US11897892B2 (en) 2021-01-19 2024-02-13 Gilead Sciences, Inc. Substituted pyridotriazine compounds and uses thereof
US11613546B2 (en) 2021-01-19 2023-03-28 Gilead Sciences, Inc. Substituted pyridotriazine compounds and uses thereof
US12024528B2 (en) 2022-04-06 2024-07-02 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and uses thereof
US12054496B2 (en) 2022-04-06 2024-08-06 Gilead Sciences, Inc. Bridged tricyclic carbamoylpyridone compounds and uses thereof

Also Published As

Publication number Publication date
CA2729649A1 (en) 2010-01-07
JP5539978B2 (en) 2014-07-02
EP2247601A4 (en) 2011-01-19
US20110281861A1 (en) 2011-11-17
ES2408654T3 (en) 2013-06-21
US8426405B2 (en) 2013-04-23
EP2247601B1 (en) 2013-04-10
EP2247601A1 (en) 2010-11-10
JP2011526246A (en) 2011-10-06
PL2247601T3 (en) 2013-09-30

Similar Documents

Publication Publication Date Title
EP2247601B1 (en) Thiazopyrimidinones and uses thereof
US8563562B2 (en) Compounds having antiviral properties
US8431581B2 (en) Imidazopyrimidines and uses thereof
EP2114903B1 (en) Bicyclic pyrimidinones and uses thereof
WO2007124544A1 (en) Integrase inhibitors - 1
WO2012006680A1 (en) 7, 9-nitrogen radical-4-oxo-4h-pyrido[l,2-a]pyrimidine-2-carboxylic acid benzylamide anti-virals
HK1160645A (en) Compounds having antiviral properties
HK1131615B (en) Bicyclic pyrimidinones and uses thereof

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 09771847

Country of ref document: EP

Kind code of ref document: A1

WWE Wipo information: entry into national phase

Ref document number: 2009771847

Country of ref document: EP

WWE Wipo information: entry into national phase

Ref document number: 12733994

Country of ref document: US

ENP Entry into the national phase

Ref document number: 2729649

Country of ref document: CA

ENP Entry into the national phase

Ref document number: 2011515026

Country of ref document: JP

Kind code of ref document: A

NENP Non-entry into the national phase

Ref country code: DE