WO2010046802A1 - Image-based localization method and system - Google Patents
Image-based localization method and system Download PDFInfo
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- WO2010046802A1 WO2010046802A1 PCT/IB2009/054476 IB2009054476W WO2010046802A1 WO 2010046802 A1 WO2010046802 A1 WO 2010046802A1 IB 2009054476 W IB2009054476 W IB 2009054476W WO 2010046802 A1 WO2010046802 A1 WO 2010046802A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- A61B6/52—Devices using data or image processing specially adapted for radiation diagnosis
- A61B6/5211—Devices using data or image processing specially adapted for radiation diagnosis involving processing of medical diagnostic data
- A61B6/5217—Devices using data or image processing specially adapted for radiation diagnosis involving processing of medical diagnostic data extracting a diagnostic or physiological parameter from medical diagnostic data
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- A61B1/00002—Operational features of endoscopes
- A61B1/00004—Operational features of endoscopes characterised by electronic signal processing
- A61B1/00009—Operational features of endoscopes characterised by electronic signal processing of image signals during a use of endoscope
- A61B1/000094—Operational features of endoscopes characterised by electronic signal processing of image signals during a use of endoscope extracting biological structures
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Definitions
- the present invention relates to an image-based localization of an anatomical region of a body to provide image-based information about the poses of an endoscope within the anatomical region of a body relative to a scan image of the anatomical region of the body.
- Bronchoscopy is an intra-operative procedure typically performed with a standard bronchoscope in which the bronchoscope is placed inside of a patient's bronchial tree to provide visual information of the inner structure.
- EM tracking One known method for spatial localization of the bronchoscope is to use electromagnetic ("EM") tracking.
- EM electromagnetic
- this solution involves additional devices, such as, for example, an external field generator and coils in the bronchoscope.
- accuracy may suffer due to field distortion introduced by the metal of the bronchoscope or other object in vicinity of the surgical field.
- a registration procedure in EM tracking involves setting the relationship between the external coordinate system (e.g., coordinate system of the EM field generator or coordinate system of a dynamic reference base) and the computer tomography (“CT”) image space.
- CT computer tomography
- the registration is performed by point-to-point matching, which causes additional latency.
- patient motion such as breathing can mean errors between the actual and computed location.
- Another known method for spatial localization of the bronchoscope is to register the pre-operative three-dimensional (“3D") dataset with two-dimensional (“2D”) endoscopic images from a bronchoscope.
- 3D three-dimensional
- 2D two-dimensional
- images from a video stream are matched with a 3D model of the bronchial tree and related cross sections of camera fly-through to find the relative position of a video frame in the coordinate system of the patient images.
- the main problem with this 2D/3D registration is complexity, which means it cannot be performed efficiently, in real-time, with sufficient accuracy.
- 2D/3D registration is supported by EM tracking to first obtain a coarse registration that is followed by a fine-tuning of transformation parameters via the 2D/3D registration.
- a known method for image guidance of an endoscopic tool involves a tracking of an endoscope probe with an optical localization system.
- the endoscope In order to localize the endoscope tip in a CT coordinate system or a magnetic resonance imaging (“MRI") coordinate system, the endoscope has to be equipped with a tracked rigid body having infrared (“IR”) reflecting spheres. Registration and calibration has to be performed prior to endoscope insertion to be able to track the endoscope position and associate it to the position on the CT or MRI. The goal is to augment endoscopic video data by overlaying a 'registered' pre-operative imaging data (CT or MRI).
- CT or MRI magnetic resonance imaging
- the present invention is premised on a utilization of a pre-operative plan to generate virtual images of an endoscope within scan image of an anatomical region of a body taken by an external imaging system (e.g., CT, MRI, ultrasound, x-ray and other external imaging systems).
- an external imaging system e.g., CT, MRI, ultrasound, x-ray and other external imaging systems.
- a virtual bronchoscopy in accordance with the present invention is a pre-operative endoscopic procedure using the kinematic properties of a bronchoscope or an imaging cannula (i.e., any type of cannula fitted with an imaging device) to generate a kinematically correct endoscopic path within the subject anatomical region, and optical properties of the bronchoscope or the imaging cannula to visually simulate an execution of the pre-operative plan by the bronchoscope or imaging cannula within a 3D model of lungs obtained from a 3D dataset of the lungs.
- an imaging cannula i.e., any type of cannula fitted with an imaging device
- a path planning technique taught by International Application WO 2007/042986 A2 to Trovato et al. published April 17, 2007, and entitled "3D Tool Path Planning, Simulation and Control System” may be used to generate a kinematically correct path for the bronchoscope within the anatomical region of the body as indicated by the 3D dataset of the lungs.
- the present invention is further premised on a utilization of image retrieval techniques to compare the pre-operative virtual image and an endoscopic image of the subject anatomical region taken by an endoscope.
- Image retrieval as known in the art is a method of retrieving an image with a given property from an image database, such as, for example, the image retrieval technique discussed in Datta, R., Joshi, D., Li, J., and Wang, J. Z.. Image retrieval: Ideas, influences, and trends of the newage. ACM Comput. Surv. 40, 2, Article 5 (April 2008).
- An image can be retrieved from a database based on the similarity with a query image.
- Similarity measure between images can be established using geometrical metrics measuring geometrical distances between image features (e.g., image edges) or probabilistic measures using likelihood of image features, such as, for example, the similarity measurements discussed in Selim Aksoy, Robert M. Haralick. Probabilistic vs. Geometric Similarity Measures for Image Retrieval, IEEE Conf. Computer Vision and Pattern Recognition, 2000, pp 357-362, vol. 2.
- One form of the present invention is an image-based localization method having a pre-operative stage involving a generation of a scan image illustrating an anatomical region of a body, and a generation of virtual information derived from the scan image.
- the virtual information includes a prediction of virtual poses of the endoscope relative to an endoscopic path within the scan image in accordance with kinematic and optical properties of the endoscope.
- the scan image and the kinematic properties of the endoscope are used to generate the endoscopic path within the scan image.
- the optical properties of the endoscope are used to generate virtual video frames illustrating a virtual image of the endoscopic path within the scan image.
- poses of the endoscopic path within the scan image are assigned to the virtual video frames, and one or more image features are extracted from the virtual video frames.
- the image-based localization method further has an intra-operative stage involving a generation of an endoscopic image illustrating the anatomical region of the body in accordance with the endoscopic path, and a generation of tracking information derived from the virtual information and the endoscopic image.
- the tracking information includes an estimation of poses of the endoscope relative to the endoscopic path within the endoscopic image corresponding to the prediction of virtual poses of the endoscope relative to the endoscopic path within the scan image.
- one or more endoscopic frame features are extracted from each video frame of the endoscopic image.
- An image matching of the endoscopic frame feature(s) to the virtual frame feature(s) facilitates a correspondence of the assigned poses of the virtual video frames to the endoscopic video frames and therefore the location of the endoscope.
- the term "generating” as used herein is broadly defined to encompass any technique presently or subsequently known in the art for creating, supplying, furnishing, obtaining, producing, forming, developing, evolving, modifying, transforming, altering or otherwise making available information (e.g., data, text, images, voice and video) for computer processing and memory storage/retrieval purposes, particularly image datasets and video frames.
- the phrase "derived from” as used herein is broadly defined to encompass any technique presently or subsequently known in the art for generating a target set of information from a source set of information.
- pre-operative as used herein is broadly defined to describe any activity occurring or related to a period or preparations before an endoscopic application (e.g., path planning for an endoscope) and the term “intra-operative” as used herein is broadly defined to describe as any activity occurring, carried out, or encountered in the course of an endoscopic application (e.g., operating the endoscope in accordance with the planned path).
- endoscopic application include, but are not limited to, a bronchoscopy, a colonscopy, a laparascopy, and a brain endoscopy.
- the pre-operative activities and intra-operative activities will occur during distinctly separate time periods. Nonetheless, the present invention encompasses cases involving an overlap to any degree of pre-operative and intra-operative time periods.
- the imaging is local, and surface images may be obtained optically with fiber optics, lenses, or miniaturized (e.g. CCD based) imaging systems.
- FIG. 1 illustrates a flowchart representative of one embodiment of an image-based localization method of the present invention.
- FIG. 2 illustrates an exemplary bronchoscopy application of the flowchart illustrated in FIG. 1.
- FIG. 3 illustrates a flowchart representative of one embodiment of a pose prediction method of the present invention.
- FIG. 4 illustrates an exemplary endoscopic path generation for a bronchoscope in accordance with the flowchart illustrated in FIG. 3.
- FIG. 5 illustrates an exemplary endoscopic path generation for a nested cannula in accordance with the flowchart illustrated in FIG. 3.
- FIG. 6 illustrates an exemplary coordinate space and 2-D projection of a non- holonomic neighborhood in accordance with the flowchart illustrated in FIG. 3.
- FIG. 7 illustrates an exemplary optical specification data in accordance with the flowchart illustrated in FIG. 3.
- FIG. 9 illustrates a flowchart representative of one embodiment of a pose estimation method of the present invention.
- FIG. 10 illustrates an exemplary tracking of an endoscope in accordance with the flowchart illustrated in FIG. 9.
- FIG. 11 illustrates one embodiment of an image-based localization system of the present invention.
- a flowchart 30 representative of an image-based localization method of the present invention is shown in FIG. 1. Referring to FIG. 1, flowchart 30 is divided into a preoperative stage S31 and an intra-operative stage S32.
- Pre-operative stage S31 encompasses an external imaging system (e.g., CT, MRI, ultrasound, x-ray, etc.) scanning an anatomical region of a body, human or animal, to obtain a scan image 20 of the subject anatomical region.
- an external imaging system e.g., CT, MRI, ultrasound, x-ray, etc.
- a simulated optical viewing by an endoscope of the subject anatomical region is executed in accordance with a pre-operative endoscopic procedure.
- Virtual information detailing poses of the endoscope predicted from the simulated viewing is generated for purposes of estimating poses of the endoscope within an endoscopic image of the anatomical region during intra-operative stage S32 as will be subsequently described herein.
- a CT scanner 50 may be used to scan bronchial tree 40 of a patient resulting in a 3D image 20 of bronchial tree 40.
- a virtual bronchoscopy may be executed thereafter based on a need to perform a bronchoscopy during intra-operative stage S32.
- a planned path technique using scan image 20 and kinematic properties of an endoscope 51 may be executed to generate an endoscopic path 52 for endoscope 51 through bronchial tree 40
- an image processing technique using scan image 20 and optical properties of endoscope 51 may be executed to simulate an optical viewing by endoscope 51 of bronchial tree 40 relative to the 3D space of scan image 20 as the endoscope 51 virtually traverses endoscopic path 52.
- Virtual information 21 detailing predicted virtual locations (x,y,z) and orientations ( ⁇ , ⁇ , ⁇ ) of endoscope 51 within scan image 20 derived from the optical simulation may thereafter be immediately processed and/or stored in a database 53 for purposes of the bronchoscopy.
- intra-operative stage S32 encompasses the endoscope generating an endoscopic image 22 of the subject anatomical region in accordance with an endoscopic procedure.
- virtual information 21 is referenced to correspond the predicted virtual poses of the endoscope within scan image 20 to endoscopic image 22.
- Tracking information 23 detailing the results of the correspondence is generated for purposes of controlling the endoscope to facilitate compliance with the endoscopic procedure and/or of displaying of the estimated poses of the endoscope within endoscopic image 22.
- endoscope 51 generates an endoscopic image 22 of bronchial tree 40 as endoscope 51 is operated to traverse endoscopic path 52.
- virtual information 21 is referenced to correspond the predicted virtual poses of endoscope 51 within scan image 20 of bronchial tree 40 to endoscopic image 22 of bronchial tree 40.
- Tracking information 23 in the form of a tracking pose data 23 a is generated for purposes for providing control data to an endoscope control mechanism (not shown) of endoscope 51 to facilitate compliance with the endoscopic path 52.
- tracking information 23 in the form of tracking pose image 23a is generated for purposes of displaying the estimated poses of endoscope 51 within bronchial tree 40 on a display 54.
- a stage S61 of flowchart 60 encompasses an execution of a 3D surface segmentation of an anatomical region of a body as illustrated in scan image 20, and a generation of 3D surface data 24 representing the 3D surface segmentation.
- Techniques for a 3D surface segmentation of the subject anatomical region are known by those having ordinary skill in the art. For example, a volume of a bronchial tree can be segmented from a CT scan of the bronchial tree by using a known marching cube surface extraction to obtain an inner surface image of the bronchial tree needed for stages S62 and S63 of flowchart 60 as will be subsequently explained herein.
- Stage S62 of flowchart 60 encompasses an execution of a planned path technique (e.g., a fast marching or A* searching technique) using 3D surface data 24 and specification data 25 representing kinematic properties of the endoscope to generate a kinematically customized path for the endoscope within scan image 20.
- a planned path technique e.g., a fast marching or A* searching technique
- 3D surface data 24 and specification data 25 representing kinematic properties of the endoscope to generate a kinematically customized path for the endoscope within scan image 20.
- endoscopic path data 26 representative of the kinematically customized path is generated for purposes of stage S63 as will be subsequently explained herein and for purposes of conducting the intra-operative procedure via the endoscope during intra-operative stage 32 (FIG. 1).
- a pre-operative path generation method of stage S62 involves a discretized configuration space as known in the art, and endoscopic path data 26 is generated as a function of the coordinates of the configuration space traversed by the applicable neighborhood.
- FIG. 6 illustrates a three-dimensional non-holonomic neighborhood 80 of seven (7) threads 81-87. This encapsulates the relative position and orientation that can be reached from the home position H at the orientation represented by thread 81.
- the pre-operative path generation method of stage S62 preferably involves a continuous use of a discretized configuration space in accordance with the present invention, so that the endoscopic path data 26 is generated as a function of the precise position values of the neighborhood across the discretized configuration space.
- the pre-operative path generation method of stage S62 is preferably employed as the path generator because it provides for an accurate kinematically customized path in an inexact discretized configuration space. Further the method enables a 6 dimensional specification of the path to be computed and stored within a 3D space.
- the configuration space can be based on the 3D obstacle space such as the anisotropic (non-cube voxels) image typically generated by CT. Even though the voxels are discrete and non- cubic, the planner can generate continuous smooth paths, such as a series of connected arcs. This means that far less memory is required and the path can be computed quickly. Choice of discretization will affect the obstacle region, and thus the resulting feasible paths, however.
- a stage S63 of flowchart 60 encompasses a sequential generation of 2D cross-sectional virtual video frames 21a illustrating a virtual image of the endoscopic path within scan image 20 as represented by 3D surface data and endoscopic path data 26 in accordance with the optical properties of the endoscope as represented by optical specification data 27.
- a virtual endoscope is advanced on the endoscopic path and virtual video frames 21 a are sequentially generated at predetermined path points of the endoscopic path as a simulation of video frames of the subject anatomical region that would be taken by a real endoscope advancing the endoscopic path. This simulation is accomplished in view of the optical properties of the physical endoscope. For example, FIG.
- FIG. 7 illustrates several optical properties of an endoscope 90 relevant to the present invention.
- the size of a lens 91 of endoscope 90 establishes a viewing angle 93 of a viewing area 92 having a focal point 94 along a projection direction 95.
- a front clipping plane 96 and a back clipping plane 97 are orthogonal to projection direction 95 to define the visualization area of endoscope 90, which is analogous to the optical depth of field. Additional parameters include the position, angle, intensity and color of the light source (not shown) of endoscope 90 relative to lens 91.
- Optical specification data 27 (FIG. 3) may indicate one or more the optical properties 91-97 for the applicable endoscope as well as any other relevant characteristics.
- the optical properties of the real endoscope are applied to the virtual endoscope.
- knowing where the virtual endoscope is looking within scan image 20 what area of scan image 20 is being focused on by the virtual endoscope, the intensity and color of light emitted by the virtual endoscope and any other pertinent optical properties facilitates a generation of a virtual video frame as a simulation of a video frame taken by a real endoscope at that path point.
- FIG. 8 illustrates four (4) exemplary sequential virtual video frames 100-103 taken from an area 78 of path 75 shown in FIG. 5. Each frame 100-103 was taken at pre-determined path point in the simulation. Individually, virtual video frames 100-103 illustrate a particular 2D cross-section of area 78 simulating an optical viewing of such 2D cross-section of area 78 taken by an endoscope within the subject bronchial tree.
- a stage S64 of flowchart 60 encompasses a pose assignment of each virtual video frame 21a.
- the coordinate space of scan image 20 is used to determine a unique position (x,y,z) and orientation ( ⁇ , ⁇ , ⁇ ) of each virtual video frame 21a within scan image 20 in view of the position and orientation of each path point utilized in the generation of virtual video frames 21a.
- Stage S64 further encompasses an extraction of one or more image features from each virtual video frame 21a.
- the feature extraction includes, but is not limited to, an edge of a bifurcation and its relative position to the view field, an edge shape of a bifurcation, an intensity pattern and spatial distribution of pixel intensity (if optically realistic virtual video frames were generated).
- the edges may be detected using simple known edge operators (e.g., Canny or Laplacian), or using more advanced known algorithms (e.g., a wavelet analysis).
- the bifurcation shape may be analyzed using known shape descriptors and/or shape modeling with principal component analysis. By further example, as shown in FIG. 8, these techniques may be used to extract the edges of frames 100-103 and a growth 104 shown in frames 102 and 103.
- stage S64 is a virtual dataset 21b representing, for each virtual video frame 21a, a unique position (x,y,z) and orientation ( ⁇ , ⁇ , ⁇ ) in the coordinate space of the pre-operative image 20 and extracted image features for feature matching purposes as will be further explained subsequently herein.
- a stage S65 of flowchart 60 encompasses a storage of virtual video frames 21a and virtual pose dataset 21b within a database having the appropriate parameter fields.
- a stage S66 of flowchart 60 encompasses a utilization of virtual video frames 21a to executes of visual fly-through of an endoscope within the subject anatomical region for diagnosis purposes.
- a completion of flowchart 60 results in a parameterized storage of virtual video frames 21a and virtual dataset 21b whereby the database will be used to find matches between virtual video frames 21a and video frames of endoscopic image 22 (FIG. 1) of the subject anatomical region generated and to correspond the unique position (x,y,z) and orientation ( ⁇ , ⁇ , ⁇ ) of each virtual video frame 21a to a matched endoscopic video frame.
- FIG. 9 illustrates a flowchart 110 representative of a pose estimation method of the present invention.
- a stage Si l l of flowchart 110 encompasses an extraction of image features from each 2D cross- sectional video frame 22a of endoscopic image 22 (FIG. 1) obtained from the endoscope of the subject anatomical region.
- the feature extraction includes, but is not limited to, an edge of a bifurcation and its relative position to the view field, an edge shape of a bifurcation, an intensity pattern and spatial distribution of pixel intensity (if optically realistic virtual video frames were generated).
- the edges may be detected using simple known edge operators (e.g., Canny or Laplacian), or using more advanced known algorithms (e.g., a wavelet analysis).
- the bifurcation shape may be analyzed using known shape descriptors and/or shape modeling with principal component analysis.
- Stage Sl 12 of flowchart 110 further encompasses an image matching of the image features extracted from virtual video frames 21 a to the image features extracted from endoscopic video frames 22a.
- a known searching technique for finding two images with the most similar features using defined metrics e.g., shape difference, edge distance etc
- the searching technique may be refined to use real-time information about previous matches of images in order to constrain the database search to a specific area of the anatomical region.
- the database search may be constrained to points and orientations plus or minus 10mm from the last match, preferably first searching along the expected path, and then later within a limited distance and angle from the expected path. Clearly, if there is no match, meaning a match within acceptable criteria, then the location data is not valid, and the system should register an error signal.
- a stage Sl 13 of flowchart 110 further encompasses a correspondence of the position (x,y,z) and orientation ( ⁇ , ⁇ , ⁇ ) of a virtual video frame 21a to an endoscopic video frame 22a matching the image feature(s) of the virtual video frame 21a to thereby estimate the poses of the endoscope within endoscopic image 22.
- feature matching achieved in stage Sl 12 enables a coordinate correspondence of the position (x,y,z) and orientation ( ⁇ , ⁇ , ⁇ ) of each virtual video frame 21a within a coordinate system of the scan image 20 (FIG. 1) of subject anatomical region to one of the endoscopic video frames 22a as an estimation of the poses of the endoscope within endoscopic image 22 of the subject anatomical region.
- tracking pose image 23a is a version of scan image 20 (FIG. 1) having an endoscope and endoscopic path overlay derived from the assigned poses of the endoscopic video frames 22a.
- the 'current location' should be nearby, therefore narrowing the set of candidate images 130. For example, there may be many similar looking bronchi. 'Snapshots' along each will create a large set of plausible, but possibly very different locations. Further, for each location even a discretized subset of orientations will generate a multitude of potential views. However, if the assumed path is already known, the set can be reduced to those likely x,y,z locations and likely ⁇ , ⁇ , ⁇ (rx,ry,rz) orientations, with perhaps some variation around the expected states.
- FIG. 11 illustrates an exemplary system 170 for implementing the various methods of the present invention.
- an imaging system external to a patient 140 is used to scan an anatomical region of patent 140 (e.g., a CT scan of bronchial tubes 141) to provide scan image 20 illustrative of the anatomical region.
- a pre- operative virtual subsystem 171 of system 170 implements pre-operative stage S31 (FIG. 1), or more particularly, flowchart 60 (FIG. 3) to display a visual flythrough 21c of the relevant pre-operative endoscopic procedure via a display 160, and to store virtual video frames 21a and virtual dataset 21b into a parameterized database 173.
- an endoscope control mechanism (not shown) of system 180 is operated to control an insertion of the endoscope within the anatomical region in accordance with the planned endoscopic path therein.
- System 180 provides endoscopic image 22 of the anatomical region to an intra-operative tracking subsystem 172 of system 170, which implements intra-operative stage S32 (FIG. 1), or more particularly, flowchart 110 (FIG. 9) to display tracking image 23a to display 160, and/or to provide tracking pose data 23b to system 180 for control feedback purposes.
- Tracking image 22a and tracking pose data 23b are collectively informative of an endoscopic path of the physical endoscope through the anatomical region (e.g., a real-time tracking of a imaging nested cannula 151 through bronchial tree 141).
- tracking pose data 23a will contain an error message signifying the failure.
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Priority Applications (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US13/124,903 US20110282151A1 (en) | 2008-10-20 | 2009-10-12 | Image-based localization method and system |
| CN2009801413723A CN102186404A (en) | 2008-10-20 | 2009-10-12 | Image-based localization method and system |
| EP09748149A EP2348954A1 (en) | 2008-10-20 | 2009-10-12 | Image-based localization method and system |
| RU2011120186/14A RU2011120186A (en) | 2008-10-20 | 2009-10-12 | METHOD AND SYSTEM OF LOCALIZATION BASED ON IMAGES |
| JP2011531612A JP2012505695A (en) | 2008-10-20 | 2009-10-12 | Image-based localization method and system |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US10666908P | 2008-10-20 | 2008-10-20 | |
| US61/106,669 | 2008-10-20 |
Publications (1)
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| WO2010046802A1 true WO2010046802A1 (en) | 2010-04-29 |
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| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/IB2009/054476 Ceased WO2010046802A1 (en) | 2008-10-20 | 2009-10-12 | Image-based localization method and system |
Country Status (6)
| Country | Link |
|---|---|
| US (1) | US20110282151A1 (en) |
| EP (1) | EP2348954A1 (en) |
| JP (1) | JP2012505695A (en) |
| CN (1) | CN102186404A (en) |
| RU (1) | RU2011120186A (en) |
| WO (1) | WO2010046802A1 (en) |
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| EP3058889A1 (en) * | 2011-05-13 | 2016-08-24 | Intuitive Surgical Operations, Inc. | Medical system providing dynamic registration of a model of an anatomical structure for image-guided surgery |
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Also Published As
| Publication number | Publication date |
|---|---|
| JP2012505695A (en) | 2012-03-08 |
| RU2011120186A (en) | 2012-11-27 |
| EP2348954A1 (en) | 2011-08-03 |
| US20110282151A1 (en) | 2011-11-17 |
| CN102186404A (en) | 2011-09-14 |
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