WO2012061402A2 - System and method for delivery of dna-binding chemotherapy drugs using nanoparticles - Google Patents
System and method for delivery of dna-binding chemotherapy drugs using nanoparticles Download PDFInfo
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- WO2012061402A2 WO2012061402A2 PCT/US2011/058805 US2011058805W WO2012061402A2 WO 2012061402 A2 WO2012061402 A2 WO 2012061402A2 US 2011058805 W US2011058805 W US 2011058805W WO 2012061402 A2 WO2012061402 A2 WO 2012061402A2
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7042—Compounds having saccharide radicals and heterocyclic rings
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/69—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the conjugate being characterised by physical or galenical forms, e.g. emulsion, particle, inclusion complex, stent or kit
- A61K47/6921—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the conjugate being characterised by physical or galenical forms, e.g. emulsion, particle, inclusion complex, stent or kit the form being a particulate, a powder, an adsorbate, a bead or a sphere
- A61K47/6923—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the conjugate being characterised by physical or galenical forms, e.g. emulsion, particle, inclusion complex, stent or kit the form being a particulate, a powder, an adsorbate, a bead or a sphere the form being an inorganic particle, e.g. ceramic particles, silica particles, ferrite or synsorb
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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Definitions
- the present invention relates to the delivery of pharmaceuticals and, more particularly, to the use of DNA-capped gold nanoparticles as a delivery mechanism.
- AuNP Gold nanoparticles
- DNA-capped AuNP has been used as intracellular gene regulation agents for the control of protein expression in cells, and platinum drugs conjugated to AuNP show considerable promise as chemotherotherapeutic agents.
- the NP core itself could be used in treatment strategies and one emerging approach is photothermal therapy, in which the particle is heated to cause damage to the cell.
- anthracycline antibiotic doxorubicin (DOX, or adriamycin) is a clinically approved chemotherapy agent that binds to DNA via sequence specific
- the binding mechanism involves intercalation of the aglycone portion of the drug at a high affinity site, e.g., 5'-CG/CG, with the daunosamine sugar lying in the minor groove, occluding an additional DNA base pair adjacent to the intercalation site.
- a high affinity site e.g., 5'-CG/CG
- the drug inhibits the enzyme topoisomerase II and the action of DNA polymerase causing cell death.
- DOX intercalation stabilizes the double-helix, which has been shown to result in an increase in thermal denaturation (e.g. melting) temperature of duplex
- the present invention comprises a system and method for loading the front line anticancer drug, doxorubicin (DOX) onto DNA-capped gold nanoparticles whose duplex DNA has been designed for specific DOX intercalation. Drug binding was confirmed by monitoring the increase in DNA melting temperature, the shift in the plasmon resonance maximum, and the increase in the NP hydrodynamic radius as a function of [DOX]/[DNA] ratio.
- DOX doxorubicin
- Figure 1 is a schematic showing preparation, drug loading and release of doxorubicin according to the present invention.
- Figure 3 is a series of graphs showing representative UV-vis spectra for lab-
- Figure 1 a system according to the presention invention that uses the sequence specificity of DOX and engineer two DNA-capped AuNPs, one capable of binding multiple copies of DOX with high affinity and a second having reduced binding for drug.
- the particles were prepared by covalently attaching multiple copies of a 5'-thiol- modified 35-mer oligonucleotide to the surface of 15.5 ⁇ 3.1 nm AuNP followed by hybridization of the complementary 19-mer, lb or 2b, to yield lab/2ab-AuNP.
- the lab duplex was designed to include three identical high affinity DOX intercalation sites having the sequence, 5'-TCG.
- Binding sites were separated by a 3-nucleotide spacer, allowing each lab to simultaneously bind three DOX molecules.
- the duplex 2ab was designed to have length and melting characteristics similar to lab, but to lack high affinity DOX intercalation sites.
- a fluorescently tagged lb was employed, lb-CY3. Fluorescence spectroscopy was then utilized to determine the quantity of lb-CY3 hybridized at the la- AuNP. Using this approach an average number of 36 ⁇ 1 lab/AuNP was measured. From this value and the
- the melting of duplex DNA at NP interfaces is known to be influenced by a number of cooperative effects resulting from the confined DNA environment at the nano-interface, namely; increased local DNA concentration and ionic strengths. These effects are known to result in an increase in melting cooperativity, as well as an increase in T m .
- An interesting aspect of the melting profiles shown in Fig. 2a is the low T m feature between 28-35 °C when r > ⁇ 3. This reversible melting feature appears to be the result of increased drug loading on the DNA and/or particle when all high affinity DOX sites on lab are saturated (r-3). This feature strongly correlates with the surface plasmon resonance band, ⁇ , of the AuNP (Fig. 2c), which undergoes a XSPK red shift from 527 to 547 nm at r>3.
- a red shift in X$PR is indicative of a change in the dielectric medium immediately surrounding the AuNP, and/or interactions between AuNP as the result of assembly or clustering.
- Such clustering is likely the result of the increasingly hydrophobic nature of lab- AuNP at high r, which can approach -300 if all DOX present is bound to AuNP.
- DLS hydrodynamic diameter
- CT-DNA calf thymus DNA
- oligonucleotides including la/2a precursors, lb/2b, and lb-CY3 (and excluding CT- DNA) were purchased from Integrated DNA Technologies.
- AuNP gold nanoparticles
- AuNPs were synthesized by standard citrate reduction method ( Figures 3-5). Next, the AuNP were functionalized with ssDNA using methods for high DNA coverage (Figure 5). Briefly, the la and 2a, compounds of Figure 1, were purchased as disulfides, and first reduced using dithiothrietol, to produce la/2a (containing a 5 '-terminal thiol), which were then purified using a Sephadex G-25 column. Next, the AuNP were incubated with la or 2a at 300x molar ratio ([la]/[AuNP]), and then subjected to the salt aging process (SI, 4).
- the [AuNP] was similarly determined based on ⁇ 5 25 - 2 xlO 8 M ⁇ cm "1 .
- DNA loading on each AuNP was estimated based on measurement of DNA uptake, as measured during purification.
- the number of lab molecules per AuNP was later confirmed using fluorescence spectroscopy (4), see below.
- la- or 2a- AuNP was combined with 100 molar excess of the respective partial complement lb, or 2b, forming lab or 2ab dsDNA functionalized AuNP (lab-AuNP, 2ab-AuNP).
- the solution was heated to 60 °C, and allowed to cool to room temperature for 1 h.
- Washing/resuspension was repeated at least three times.
- UV -visible Absorption UV-vis: The UV-vis measurements were collected on a Varian Caryl 00 Bio UV-vis spectrophotometer between 200-900nm. The instrument is equipped with an 8-cell automated holder with high precision Peltier heating controller.
- Dynamic Light Scattering (DLS) Dynamic Light Scattering (DLS) measurements were collected using a Malvern Zetasizer ZS instrument equipped with a 633 nm laser source, and a backscattering detector at 173°.
- the instrument is equipped with a 150W xenon white light excitation source and computer controlled monochromator.
- the detector is a R928P high sensitivity photon counting detector that is calibrated to emission wavelength. All PL emission and excitation spectra were collected using both wavelength correction of source intensity and detector sensitivity.
- TEM measurements were performed on either a FEI T12 Twin TEM operated at 120 kV with a LaB6 filament and Gatan Orius dual-scan CCD camera (Cornell Center for Materials Research), or a JEOL 2000EX instrument operated at 120 kV with a tungsten filament (SUNY-ESF, N.C. Brown Center for Ultrastructure Studies). Particle size was analyzed manually by modeling each qdot as a sphere, with statistical analsysis performed using ImageJ software on populations of at least 100 counts.
- MEM Eagle's minimum essential media
- FBS fetal bovine serum
- DOX -1 ab/2ab-AuNP systems produced similar inhibition in comparison to DOX alone.
- the lab-AuNP control was observed to not produce inhibition at any concentrations explored.
- the internalization of a single DOX lab/2ab-AuNP is perhaps extremely likely to kill a cell when internalized, whereas DOX internalization may result in only a slightly increased likelihood of cell death, and it may take many internalized DOX molecules to kill a cell. Upcoming cytotoxicity experiments will likely clarify the inhibition differences between DOX-lab/2ab-AuNP and DOX alone.
- DNA-capped nanoparticles can be designed to bind multiple copies of an intercalating drug.
- the lab-AuNP is clearly shown to bind DOX at high affinity sites, which indicated by T m and D elevation.
- the particle-bound DOX was shown to be released and transferred under mild conditions to a receptor DNA.
- Preliminary cytotoxicity studies demonstrated similar inhibition of neuroblastoma cells by the DOX-lab/2ab-AuNP systems as by the drugs alone and slightly elevated inhibition at low concentration. Fluorescence-based kinetic drug transfer experiments are in progress, and are intended to determine the rate and extent of drug release. Other upcoming work includes varying conditions of cytotoxicity studies.
- the present invention provides for multiple copies of certain clinically used anticancer drugs to be attached to particle bound DNA to yield a new type of drug delivery device.
- the device is equipped with a vector capable of targeting a cancer cell, it will be possible to direct high copy numbers of drug to tumors.
- the gold nanoparticles with attached DNA can be internalized by the cell, the present invention is capable of delivering a high payload of drug specifically to cancer cells, thereby effectively enhancing the therapeutic window of the antitumor agent.
- An additional attractive feature of the present invention is that since existing clinically used anticancer drugs can be used, FDA approval of the drug which is incorporated into the device, is not required. Implementation of the present invention may require determining the cytotoxicity of the invention toward various cancer cell lines, incorporation of a cellular targeting vector, equipping the device with other DNA binding drugs, and exploring methods of triggering drug release such as degradation of DNA by nucleases and photothermal heating.
- the nanoparticle delivery system of the present invention may be adapted to deliver other drugs by tailoring the DNA encoding to accommodate additional chemotherapy drugs, such as actinomycin D (ActD), epirubicin (EPI), idarubicin (IDA), and bleomycin (BLM).
- additional chemotherapy drugs such as actinomycin D (ActD), epirubicin (EPI), idarubicin (IDA), and bleomycin (BLM).
- the present invention can also incorporate folic acid (FA) and RGB targeting vectors and PEG groups to the dsDNA functionality.
- a list of the ssDNA sequences having binding affinity for these drugs are shown in Table 1 below.
- Transo-Pharm GmbH which has provided samples of DOX, EPI and IDA (see letters). Transo-Pharm became interested in our work from our recent publication (21), and is currently evaluating our preliminary patent.
- ActD 2a 5 '-(HS)-(T)i5-GA GCT TAGA GCT TAGA GCT T- 35 3
- EPI 3a 5 '-(HS)-(Dis-TGT TGG TAT TGG TAT TGG TC-3 ' 35 3
- BLM 5a 5 '-(HS)-(T)is- T TGCC ACT TGCC ACT TGCC A- 3 ' 35 3
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Abstract
System and method for loading the front line anticancer drug, doxorubicin (DOX) onto DNA-capped gold nanoparticles whose duplex DNA has been designed for specific DOX intercalation. Since each AuNP contains about 108 high affinity drug sites, this design allows for a high local DOX concentration on the particle. Drug binding was confirmed by monitoring the increase in DNA melting temperature, the shift in the plasmon resonance maximum, and the increase in the NP hydrodynamic radius as a function of [DOX]/[DNA] ratio. The feasibility of the nanoparticles as a drug delivery system was demonstrated by showing that particle-bound DOX could be transferred to a target DNA.
Description
TITLE
SYSTEM AND METHOD FOR DELIVERY OF DNA-BINDING CHEMOTHERAPY DRUGS USING NANOPARTICLES
Cross-reference to Related Applications
[0001] This application claims priority to U.S. Provisional Patent Application Ser.
No. 61/408,824 filed on November 1, 2010 and entitled "System and Method for Delivery of Doxorubin Using Gold Nanoparticles," the entirety of which is hereby incorporated by reference herein
BACKGROUND OF THE INVENTION
1. FIELD OF THE INVENTION
[0002] The present invention relates to the delivery of pharmaceuticals and, more particularly, to the use of DNA-capped gold nanoparticles as a delivery mechanism.
2. DESCRIPTION OF THE RELATED ART
[0003] Metal compounds and complexes are widely used for treating and detecting disease and they are playing an increasingly important role in the emerging field of nanomedicine. Gold nanoparticles (AuNP) in particular offer a number of attractive features for visualization, detection, and treatment of disease. They exhibit a range of surface chemistries for drug or biomaterial modification and, when internalized by the cell, they appear to have minimally toxic effects. For example, DNA-capped AuNP has been used as intracellular gene regulation agents for the control of protein expression in cells, and platinum drugs conjugated to AuNP show considerable promise as chemotherotherapeutic agents. In addition to drug attachment, the NP core itself could be used in treatment strategies and one emerging approach is photothermal therapy, in which the particle is heated to cause damage to the cell.
[0004] Most clinically used anticancer drugs have relatively narrow therapeutic windows indicating that the distribution of the drug between normal and diseased tissue is small. For example, the anthracycline antibiotic doxorubicin (DOX, or adriamycin) is a clinically approved chemotherapy agent that binds to DNA via sequence specific
intercalation. The binding mechanism involves intercalation of the aglycone portion of the drug at a high affinity site, e.g., 5'-CG/CG, with the daunosamine sugar lying in the minor groove, occluding an additional DNA base pair adjacent to the intercalation site. When bound to DNA, the drug inhibits the enzyme topoisomerase II and the action of DNA polymerase causing cell death. DOX intercalation stabilizes the double-helix, which has been
shown to result in an increase in thermal denaturation (e.g. melting) temperature of duplex
DNA.
[0005]
BRIEF SUMMARY OF THE INVENTION
[0006] It is therefore a principal object and advantage of the present invention to provide a system and method for delivering doxorubicin.
[0007] In accordance with the foregoing objects and advantages, the present invention comprises a system and method for loading the front line anticancer drug, doxorubicin (DOX) onto DNA-capped gold nanoparticles whose duplex DNA has been designed for specific DOX intercalation. Drug binding was confirmed by monitoring the increase in DNA melting temperature, the shift in the plasmon resonance maximum, and the increase in the NP hydrodynamic radius as a function of [DOX]/[DNA] ratio.
BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWING(S)
[0008] The present invention will be more fully understood and appreciated by reading the following Detailed Description in conjunction with the accompanying drawings, in which:
[0009] Figure 1 is a schematic showing preparation, drug loading and release of doxorubicin according to the present invention.
[0010] Figure 2 is a series of graphs showing: (a) thermal denaturation plots obtained at l°C/min for lab-AuNP at increasing [DOX]/[lab] ratio, r = 0 - 12, and the summary of Tm (b), XSPR (c), and Dh (d) change with r, allowing for comparison between lab and 2ab, where melting profiles normalized and off-set for clarity only.
[0011] Figure 3 is a series of graphs showing representative UV-vis spectra for lab-
AuNP (a) and 2ab-AuNP (b) at DOX loadings of r = [DOX]/[l ab/2ab] = 0, 3, 6, 9, 12.
([AuNP]=14nM, 10 mM Phosphate Buffer, lOOmM NaCl, pH= 7.4).
[0012] Figure 4 is a graph of a representative first derivative plot of thermal denaturation of DOX-lab-AuNP at r = 9. Inset: The corresponding thermal denaturation profile. (1 °C/min, 10 mM Phosphate Buffer, lOOmM NaCl, pH= 7.4).
[0013] Figure 5 is a graph of the Thermal denaturation plots for 2ab-AuNP at r =
[DOX]/[lab] = 0, 3, 6, 9, 12. r - 0 - 12. Melting profiles have been normalized and off-set for clarity. (1 °C/min, 10 mM Phosphate Buffer, l OOmM NaCl, pH= 7.4).
[0014] Figure 6 is a graph of thermal denaturation control studies for DOX (a, r = 12,
[DOX] = 5.9 μΜ) and DOX-l a-AuNP (b, r = 12; [AuNP] = 13.7 nM. Cooperative melting in the temperature range of ~55-65 °C is not observed for either control.
[0015] Figure 7 is a graph of a representative TEM micrograph (a) and statistical analysis (b) for la-AuNP with diameter of 15.5 ± 3.1 nm («=399).
DETAILED DESCRIPTION OF THE INVENTION
[0016] Referring now to the drawings, wherein like reference numerals refer to like parts throughout, there is seen in Figure 1 a system according to the presention invention that uses the sequence specificity of DOX and engineer two DNA-capped AuNPs, one capable of binding multiple copies of DOX with high affinity and a second having reduced binding for drug. The particles were prepared by covalently attaching multiple copies of a 5'-thiol- modified 35-mer oligonucleotide to the surface of 15.5 ± 3.1 nm AuNP followed by hybridization of the complementary 19-mer, lb or 2b, to yield lab/2ab-AuNP. The lab duplex was designed to include three identical high affinity DOX intercalation sites having the sequence, 5'-TCG. Binding sites were separated by a 3-nucleotide spacer, allowing each lab to simultaneously bind three DOX molecules. The duplex 2ab was designed to have length and melting characteristics similar to lab, but to lack high affinity DOX intercalation sites. In order to quantify the number of lab or 2ab at each AuNP (e.g. dsDNA), a fluorescently tagged lb was employed, lb-CY3. Fluorescence spectroscopy was then utilized to determine the quantity of lb-CY3 hybridized at the la- AuNP. Using this approach an average number of 36 ± 1 lab/AuNP was measured. From this value and the
spectrophotometrically determined concentration of AuNP, the value of, [DOX]/[lab] = r, was determined for the various experiments. Considering that three binding sites exist per lab, one can expect -108 high affinity DOX sites per AuNP.
[0017] The 1 ab-AuNP (with [AuNP] = 13.7 nM) were incubated with DOX, at r = 0 to 12 for 40 min at RT in PBS (10 mM Phosphate buffer, 100 mM NaCl, pH = 7.4), and separated from unbound drug by centrifugation. To probe the uptake of DOX via intercalation to lab- AuNP, we investigated the thermal denaturation of the lab strands by measuring increase in extinction at 260nm using UV-visible spectroscopy (UV-vis). The melting of duplex DNA at NP interfaces is known to be influenced by a number of cooperative effects resulting from the confined DNA environment at the nano-interface, namely; increased local DNA concentration and ionic strengths. These effects are known to result in an increase in melting cooperativity, as well as an increase in Tm.
[0018] Figure 2 shows the observed melting profiles as a function of r. At r = 0, the lab-AuNP exhibits cooperative melting associated with duplex lab with Tm = 56.6 °C.
However, upon addition of drug, the Tm increases from 56.6 to 65.4 °C in the range, r = 0 to ~6 (Fig. la). This is consistent with drug binding to DNA on lab- AuNP thereby increasing
Tm. An interesting aspect of the melting profiles shown in Fig. 2a is the low Tm feature between 28-35 °C when r >~3. This reversible melting feature appears to be the result of increased drug loading on the DNA and/or particle when all high affinity DOX sites on lab are saturated (r-3). This feature strongly correlates with the surface plasmon resonance band, βριι, of the AuNP (Fig. 2c), which undergoes a XSPK red shift from 527 to 547 nm at r>3. A red shift in X$PR is indicative of a change in the dielectric medium immediately surrounding the AuNP, and/or interactions between AuNP as the result of assembly or clustering. Such clustering is likely the result of the increasingly hydrophobic nature of lab- AuNP at high r, which can approach -300 if all DOX present is bound to AuNP.
[0019] Drug binding to lab-AuNP was also probed via dynamic light scattering
(DLS). DLS measures the hydrodynamic diameter, Dh, of the lab- AuNP, which is influenced by both the diameter of AuNP as well as the thickness of the DNA shell. Since drug initially binds at each site on lab by intercalation, we can expect an increase in the length of l ab by ~lnm (3 x 3.6A), which would correlated with a net increase of ~2nm in Dh. Fig. 2d shows a D increase with r of about ~2nm at r~3, and a net increase of ~4nm at r>3. This observation is consistent with drug intercalation at r < ~3 followed by less specific interaction at r>~3.
[0020] In order to better understand the interaction between DOX and lab- AuNP, parallel experiments were carried out with 2ab-AuNP which contains DNA sequences that more weakly bind drug. At r = 0, the Tm value for 2ab-AuNP is 58.0 °C (Fig. 5) and the increase in Tm with r is notably less than with lab- AuNP, Fig. 2b. Interestingly, for 2ab- AuNP there is no change in either SPR (Fig. 2c) or D (Fig. 2d) with r which collectively suggest that DOX binding to this gold bound duplex is weaker than for lab and that the binding mechanism may be non-intercalative in nature.
[0021] If lab-AuNP is to potentially serve as a carrier for delivering high payloads of drug to a tumor site, it is important to show that DOX can be released from the loaded particle to a receptor target DNA. That this is possible was demonstrated by loading a dialysis membrane with DOX-lab-AuNP (r = 1), exposing the membrane to a solution containing a high concentration of calf thymus DNA (CT-DNA) and after 24 h, measuring the concentration of DOX transferred from particle-DNA to the target CT-DNA outside the membrane (see supporting information). Spectrophotometric analysis showed that -28% of the DOX originally bound to lab- AuNP was transferred to CT-DNA, demonstrating that DOX can be released from particle-DNA and captured by a receptor DNA.
[0022] These results show that lab- AuNP binds DOX at high affinity sites (5'-TCG), and once these sites are saturated (r~3) drug continues to weakly bind to other regions of the DNA and/or AuNP, increasing AuNP hydrophobicity. Moreover, the particle-bound drug can be transferred to a receptor DNA, raising the possibility that drug delivered by the particle to a cell could be available for interaction with genomic DNA. Aside from simple diffusion of bound drug away from particle DNA, it may be possible to initiate drug release by photothermal melting, apatmer recognition, and/or degradation of the drug-DNA complex by nucleases. These studies are part of our ongoing work to explore the potential of AuNPs as new delivery vehicles for clinically approved anticancer drugs.
EXAMPLE
Experimental Details
[0023] All materials, unless otherwise specified, were purchased from Sigma Aldrich.
All oligonucleotides, including la/2a precursors, lb/2b, and lb-CY3 (and excluding CT- DNA) were purchased from Integrated DNA Technologies.
Experimental Design
Nanoparticle Synthesis and DNA-functionalization (la/2a-AuNP
[0024] The gold nanoparticles (AuNP) with average diameters of 15.5 ± 3.1 nm
AuNPs were synthesized by standard citrate reduction method (Figures 3-5). Next, the AuNP were functionalized with ssDNA using methods for high DNA coverage (Figure 5). Briefly, the la and 2a, compounds of Figure 1, were purchased as disulfides, and first reduced using dithiothrietol, to produce la/2a (containing a 5 '-terminal thiol), which were then purified using a Sephadex G-25 column. Next, the AuNP were incubated with la or 2a at 300x molar ratio ([la]/[AuNP]), and then subjected to the salt aging process (SI, 4). The [la] and [2a] stock concentrations were determined using UV-visible spectroscopy (UV-vis), based on extinction coefficients, ε26ο = 304,800 and 316,900 M^cm"1, respectively. The [AuNP] was similarly determined based on ε525 - 2 xlO8 M^cm"1.
[0025] The la- AuNP or 2a- AuNP were then purified via centrifugation. The average
DNA loading on each AuNP (~33 ± 2) was estimated based on measurement of DNA uptake, as measured during purification. The number of lab molecules per AuNP was later confirmed using fluorescence spectroscopy (4), see below.
DNA-Hvbridization CI ab/2ab-AuNP)
[0026] In a typical hybridization experiment, la- or 2a- AuNP was combined with 100 molar excess of the respective partial complement lb, or 2b, forming lab or 2ab dsDNA
functionalized AuNP (lab-AuNP, 2ab-AuNP). To promote full hybridization, the solution was heated to 60 °C, and allowed to cool to room temperature for 1 h. The 1 ab- or 2ab-AuNP were then purified of free lb or 2b via centrifugation. All final lab- or 2ab-AuNP was resuspended in PBS (100 mM NaCl, 10 mM Phosphate buffer, pH=7.4).
Washing/resuspension was repeated at least three times.
[0027] Fluorescence spectroscopy using a dye-modified lb ssDNA was used to determine the average loading of lab on AuNP. Briefly, samples of la- AuNP with lb-CY3 (lb modified by covalent attachment of the fluorescent dye, CY3) as described above were used, except that la- AuNP was combined with 9.4 molar excess of lb-CY3. Following hybridization, each solution was centrifuged, removing the lab-Cy3-AuNP, and the supernatant containing excess lb-CY3 was removed and compared to a concentration calibration curve prepared for lb-CY3. Each experiment was performed in triplicate. Using this method (4), an average number of 36 ± 1 lab dsDNA was calculated at each AuNP. Using this value, it was possible to calculate the appropriate number of DOX drugs to add to a known concentration of AuNP, as described next.
Drug Loading and Thermal Denaturation Analysis
[0028] We next utilized the 1 ab- or 2ab-AuNP prepared above, with dsDNA- functionalization, for drug (DOX) loading. For each DOX binding and melting experiment, lab- or 2ab-AuNP were incubated for 40 min with DOX at specific ratios, r =
[DOX]/[lab/2ab]. In this study, we explored r = 0 - 12, based on the number of lab per AuNP, as well as the number of binding sites at each lab. Next, each DOX- lab- AuNP was analyzed via thermal denaturation melting experiments using temperature controlled UV-vis at Abs = 260 nm and a heating rate of 1 °C/min from 25 °C to 80 °C. Each melting temperature was taken as the maximum of a peak-fitted first derivative plot of its
corresponding melting curve (using PeakFit® Peak Separation and Analysis Software, V.4.12). The [DOX] was calculated for DOX stock solutions based on ε480 = 1 1 ,500 M"'cm" '(Fig 6).
Drug Release
[0029] The monitor the release of DOX bound to the 1 ab- AuNP, we employed a transfer dialysis experiment. Briefly, a concentrated solution ([AuNP] = 197.3 nM) of DOX- lab-AuNP (r = 1) was placed inside a dialysis membrane (Spectra/Por Biotech regenerated cellulose dialysis membrane, MWCO = 15kD), and the loaded membrane was placed in a 8.53 x 10"4 M solution of calf thymus DNA (CT-DNA) in PBS (10 mM phosphate buffer, 100
mM NaCl, pH = 7.4) and stirred for 24 h. After this time, a UV-vis spectral analysis of the solution containing CT-DNA showed the characteristic spectrum of DOX bound to DNA. Using, ε505 = 6,930 IVf'cm"1, (Fig 6), the [DOX] in the solution containing CT-DNA was calculated and the percentage of particle-bound drug transferred to the CT-DNA outside the membrane was determined to be 27.5%. Two controls, which only deviated from the experimental conditions by the contents of the dialysis membrane, were carried out. A control containing only lab-AuNP in the dialysis membrane verified that no AuNP passed through the membrane, and a second control containing only DOX in the dialysis membrane verified that DOX passes through the membrane and binds CT-DNA to produce the spectrum noted in the drug transfer experiment.
Instrumentation
[0030] UV -visible Absorption (UV-vis): The UV-vis measurements were collected on a Varian Caryl 00 Bio UV-vis spectrophotometer between 200-900nm. The instrument is equipped with an 8-cell automated holder with high precision Peltier heating controller.
[0031] Dynamic Light Scattering (DLS): Dynamic Light Scattering (DLS) measurements were collected using a Malvern Zetasizer ZS instrument equipped with a 633 nm laser source, and a backscattering detector at 173°.
Fluorescence Spectroscopy
[0032] The PL emission and excitation measurements were collected on a Fluoromax-
4 photon counting spectrofluorometer (Horiba Jobin Yvon). The instrument is equipped with a 150W xenon white light excitation source and computer controlled monochromator. The detector is a R928P high sensitivity photon counting detector that is calibrated to emission wavelength. All PL emission and excitation spectra were collected using both wavelength correction of source intensity and detector sensitivity.
[0033] Transmission Electron Microscopy (TEM): TEM measurements were performed on either a FEI T12 Twin TEM operated at 120 kV with a LaB6 filament and Gatan Orius dual-scan CCD camera (Cornell Center for Materials Research), or a JEOL 2000EX instrument operated at 120 kV with a tungsten filament (SUNY-ESF, N.C. Brown Center for Ultrastructure Studies). Particle size was analyzed manually by modeling each qdot as a sphere, with statistical analsysis performed using ImageJ software on populations of at least 100 counts.
Table 1. Thermal melting temperature, Tm, surface plasmon resonance wavelength maximum, and dynamic light scattering diameter, Dh, of lab/2ab-AuNP with
[DOX]/[lab/2ab] = /- = 0-12.
R lab-AuNP 2ab-AuNP
rm (°c) rm (°c) π,αχ (nm) Dh (nm) Tm (°C) ληιβχ (ran) Dh (nm)
0.0 56.6 527 30.9 58.0 525 27.5
1 .5 58.9 527 32.1
3.0* 28 59.9 527 32.9 60.7 525 27.0
4.5 28 62.1 528 34.1
6.0 29 63.8 537 34.5 61.9 525 26.9
7.5 30 64.9 542 34.7
9.0 33 63.9 542 34.4 62.2 525 27.0
10.5 30 64.7 545 34.2
12 35 65.4 547 34.6 62.9 525 27.1
*r = 3.0 values for lab-AulN P are averages of triplicate samples (Tm = 28±2
°C, and Tm = 59.9±0.8 °C).
[0034] If lab-AuNP is to potentially serve as a carrier for delivering high payloads of drug to a tumor site, it is important that DOX can be released from the loaded particle to a receptor target DNA. In addition to DNA melting, we also investigated DOX release to receptor DNA in solution using a dialysis membrane loaded with DOX-lab-AuNP (at rj = 1), and exposed to a solution containing a high concentration of duplex calf thymus DNA (CT- DNA). The dialysis membrane itself serves only to separate the AuNP from DOX for UV-vis analysis. The DOX release, and uptake by CT-DNA was then measured by UV-vis (20) in which we measured the release of DOX from the l ab- AuNP. In this test, -28% of DOX was released after only 24 h, demonstrating a significant drug release in a timely manner to a receptor DNA.
[0035] Cytotoxicity experiments were performed using neuroblastoma (SK-N-SH) cells under standard conditions in an incubator, using Eagle's minimum essential media (MEM) containing 10% fetal bovine serum (FBS), 100 μg/mL streptomycin, and 100 IU/mL penicillin. Solutions containing free DOX and 1 ab-AuNP loaded with DOX at a saturated loading ratio (3 DOX/l ab), were prepared at [DOX] = 0.1, 1 , 5, and 10 μΜ, for 24 h exposure, 1 h recovery, in media. Cells were plated in a 96-well microplate, and, following incubation, media was removed, and media containing specified concentrations of drug were added. Following exposure time, media containing drug was removed, and cells were washed with fresh media. Following recovery time, cell viability was determined using the
CCK-8 assay. To evaluate the degree of cytotoxicity attributable to the DNA-AuNP in the absence of drug, a control experiment was performed using lab-AuNP at an effective [DOX] = 0.05, 0.5, 2.5, and 5 μΜ, for a 48 h exposure, and 1 h recovery time.
[0036] In these preliminary cytotoxicity experiments, the DOX -1 ab/2ab-AuNP systems produced similar inhibition in comparison to DOX alone. The lab-AuNP control was observed to not produce inhibition at any concentrations explored. Interestingly, the DOX- lab-AuNP was noted to produce a greater percent inhibition at the lowest two [DOX] = 0.1 and 1 μΜ, in comparison to DOX alone, demonstrating the potential of the DOX-lab-AuNP systems to effectively kill cells at low concentration. The internalization of a single DOX lab/2ab-AuNP is perhaps extremely likely to kill a cell when internalized, whereas DOX internalization may result in only a slightly increased likelihood of cell death, and it may take many internalized DOX molecules to kill a cell. Upcoming cytotoxicity experiments will likely clarify the inhibition differences between DOX-lab/2ab-AuNP and DOX alone.
[0037] Collectively, these results demonstrate that DNA-capped nanoparticles can be designed to bind multiple copies of an intercalating drug. The lab-AuNP is clearly shown to bind DOX at high affinity sites, which indicated by Tm and D elevation. The particle-bound DOX was shown to be released and transferred under mild conditions to a receptor DNA. Preliminary cytotoxicity studies demonstrated similar inhibition of neuroblastoma cells by the DOX-lab/2ab-AuNP systems as by the drugs alone and slightly elevated inhibition at low concentration. Fluorescence-based kinetic drug transfer experiments are in progress, and are intended to determine the rate and extent of drug release. Other upcoming work includes varying conditions of cytotoxicity studies.
[0038] Most clinically used anticancer drugs have relatively narrow therapeutic windows indicating that the distribution of the drug between normal and diseased tissue is small. The present invention provides for multiple copies of certain clinically used anticancer drugs to be attached to particle bound DNA to yield a new type of drug delivery device. When the device is equipped with a vector capable of targeting a cancer cell, it will be possible to direct high copy numbers of drug to tumors. As the gold nanoparticles with attached DNA can be internalized by the cell, the present invention is capable of delivering a high payload of drug specifically to cancer cells, thereby effectively enhancing the therapeutic window of the antitumor agent. An additional attractive feature of the present invention is that since existing clinically used anticancer drugs can be used, FDA approval of the drug which is incorporated into the device, is not required. Implementation of the present invention may require determining the cytotoxicity of the invention toward various cancer
cell lines, incorporation of a cellular targeting vector, equipping the device with other DNA binding drugs, and exploring methods of triggering drug release such as degradation of DNA by nucleases and photothermal heating.
[0039] The nanoparticle delivery system of the present invention may be adapted to deliver other drugs by tailoring the DNA encoding to accommodate additional chemotherapy drugs, such as actinomycin D (ActD), epirubicin (EPI), idarubicin (IDA), and bleomycin (BLM). The present invention can also incorporate folic acid (FA) and RGB targeting vectors and PEG groups to the dsDNA functionality. A list of the ssDNA sequences having binding affinity for these drugs are shown in Table 1 below. We recently began a collaboration with the drug company Transo-Pharm GmbH, which has provided samples of DOX, EPI and IDA (see letters). Transo-Pharm became interested in our work from our recent publication (21), and is currently evaluating our preliminary patent.
Table 1: DNA sequences required for Drug Intercalation:
Drug DNA Encoding (Bold = Drug Binding Site) bases #
Sites
DOX la= 5 '-(HS)-(T)i5-TGT TCG TAT TCG TAT TCG TC-3 ' 35 3 lb= 3 '-CA AGC ATA AGC ATAAGCAG-5 ' 19
ActD 2a= 5 '-(HS)-(T)i5-GA GCT TAGA GCT TAGA GCT T- 35 3
3 ' 20
2b=J '-CT CGA ATCT CGA ATCT CGA A-
5 '
EPI 3a= 5 '-(HS)-(Dis-TGT TGG TAT TGG TAT TGG TC-3 ' 35 3
3b= '- CA ACC ATA ACC ATA ACC AG-5 ' 19
IDA 4a= 5 *-(HS)-(T)15-GTT TCA GTT TCA GTT TCA GT-5 ' 35 3
4b=3 '-CAA AGT CAAAGTCAA AGT CA- J ' 20
BLM 5a= 5 '-(HS)-(T)is- T TGCC ACT TGCC ACT TGCC A- 3 ' 35 3
5b= 3 -AACGG TGAACGG TGA ACGG T-5 ' 20
[0040] It should be recognized by those of skill in the art that the oligonucleotides having binding sites for other DNA binding drugs as identified above could be substituted for the doxorubicin specific binding sites to bind those other drugs to the gold nanoparticles of the present invention.
Claims
1. A drag delivery molecule, comprising:
a gold nanoparticle;
a first nucleic acid molecule covalently linked to said gold nanoparticle and having at least one binding site having a high affinity for a drug; and
a second, complementary nucleic acid molecule hybridized to said first nucleic acid molecule to form a double stranded nucleic acid molecule.
2. The molecule of claim 1 , wherein said drug is doxorubicin molecule.
3. The molecule of claim 1, wherein said first nucleic acid molecule has at least three binding sites having a high affinity for doxorubicin.
4. The molecule of claim 3, further comprising a plurality of doxorubicin molecules bound to said plurality of binding sites.
5. The molecule of claim 3, wherein said first nucleic acid molecule is longer than said second, complementary nucleic acid molecule.
6. The molecule of claim 1, wherein said gold nanoparticle has a diameter of about 15.5 nanometers.
7. A method of forming a drug delivery molecule, comprising the steps of:
covalently linking a first nucleic acid molecule including a binding site having a high affinity for a drug to a gold nanoparticle; and
hybridizing a second, complementary nucleic acid molecule to said first nucleic acid molecule to form a double-stranded nucleic acid molecule.
8. The method of claim 7, wherein said drug is doxorubicin.
9. The molecule of claim 7, wherein the step of covalently linking a first nucleic acid molecule to a gold nanoparticle further comprises covalently linking a plurality of said first nucleic acid molecules to said gold nanoparticle.
10. The molecule of claim 9, wherein the step of hybridizing a second, complementary nucleic acid molecule to said first nucleic acid molecule to form a double- stranded nucleic acid molecule further comprises hybridizing a plurality of said second, complementary nucleic acid molecules to said plurality of said first nucleic acid molecules to form a plurality of said binding sites.
1 1. The molecule of claim 10, further comprising a plurality of doxorubicin molecules bound to said plurality of binding sites.
12. The molecule of claim 10, wherein each of said plurality of first nucleic acid molecules is longer than each of said second nucleic acid molecules.
13. The molecule of claim 1 , wherein said gold nanoparticle has a diameter of about 15.5 nanometers.
14. A method of delivering a drug to a patient, comprising the steps of:
providing at least one gold nanoparticle covalently linked to a plurality of first nucleic acid molecules, each of which is hybridized with a plurality of second,
complementary nucleic acid molecules to form a plurality of double-stranded nucleic acid molecule each having a binding site with a high affinity for a drug molecule; and
binding a plurality of said drugs molecules to said binding sites to form a drug loaded nanoparticle.
15. The method of claim 14, further comprising the step of administering the drug loaded nanoparticle to a patient.
16. The method of claim 14, wherein said drug is doxorubicin.
17. The method of claim 14, wherein said gold nanoparticle has a diameter of about 15.5 nanometers.
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| CA2816121A CA2816121C (en) | 2010-11-01 | 2011-11-01 | System and method for delivery of dna-binding chemotherapy drugs using nanoparticles |
| EP11838686.1A EP2635262B1 (en) | 2010-11-01 | 2011-11-01 | System and method for delivery of dna-binding chemotherapy drugs using nanoparticles |
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| WO2014153394A1 (en) * | 2013-03-21 | 2014-09-25 | Genisphere, Llc | Cellular delivery of dna intercalating agents |
| WO2024239165A1 (en) * | 2023-05-19 | 2024-11-28 | 浙江大学 | Orthogonal reaction controlled phase-separated aggregate, method for preparing same, and use |
| US12338435B2 (en) | 2016-02-19 | 2025-06-24 | Code Biotherapeutics, Inc. | Nucleic acid carriers and therapeutic methods of use |
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| KR101337684B1 (en) * | 2011-10-17 | 2013-12-30 | 성균관대학교산학협력단 | Multi-functional nucleic acid-based anticancer agent for targeted delivery and therapy, preparation method thereof, and anticancer composition comprising the same |
| WO2015038914A1 (en) * | 2013-09-12 | 2015-03-19 | The Board Of Regents Of The University Of Texas System | 3d printing with nucleic acid adhesives |
| KR101537474B1 (en) * | 2014-04-18 | 2015-07-16 | 성균관대학교산학협력단 | Self-illuminative nanocomplexes, preparation method thereof and anticancer composition comprising thereof |
| CA2993823C (en) | 2015-07-28 | 2024-01-02 | Board Of Regents, The University Of Texas System | Implant compositions for the unidirectional delivery of therapeutic compounds to the brain |
| WO2018218004A1 (en) | 2017-05-24 | 2018-11-29 | The Board Of Regents Of The University Of Texas System | Linkers for antibody drug conjugates |
| CN111228485A (en) * | 2019-08-08 | 2020-06-05 | 广州市第一人民医院(广州消化疾病中心、广州医科大学附属市一人民医院、华南理工大学附属第二医院) | Preparation method of nucleic acid nano-drug carrier for near-infrared regulation of drug release |
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Cited By (5)
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| WO2014153394A1 (en) * | 2013-03-21 | 2014-09-25 | Genisphere, Llc | Cellular delivery of dna intercalating agents |
| US20160051693A1 (en) * | 2013-03-21 | 2016-02-25 | Genisphere, Llc | Cellular Delivery of DNA Intercalating Agents |
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| WO2024239165A1 (en) * | 2023-05-19 | 2024-11-28 | 浙江大学 | Orthogonal reaction controlled phase-separated aggregate, method for preparing same, and use |
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| WO2012061402A3 (en) | 2012-07-05 |
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| EP2635262A4 (en) | 2016-05-25 |
| US8632789B2 (en) | 2014-01-21 |
| CA2816121C (en) | 2017-06-13 |
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| CA2816121A1 (en) | 2012-05-10 |
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