WO2018027316A1 - Oncolytic rhabdovirus expressing il12 - Google Patents

Oncolytic rhabdovirus expressing il12 Download PDF

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WO2018027316A1
WO2018027316A1 PCT/CA2017/050941 CA2017050941W WO2018027316A1 WO 2018027316 A1 WO2018027316 A1 WO 2018027316A1 CA 2017050941 W CA2017050941 W CA 2017050941W WO 2018027316 A1 WO2018027316 A1 WO 2018027316A1
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virus
protein
seq
cells
tumour cell
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Almohanad ALKAYYAL
Rebecca AUER
John Cameron Bell
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Priority to CN202410453987.6A priority Critical patent/CN118436692A/en
Priority to CA3033613A priority patent/CA3033613A1/en
Priority to CN201780059236.4A priority patent/CN110050062A/en
Priority to EP17838259.4A priority patent/EP3497208A4/en
Priority to US16/324,490 priority patent/US11590184B2/en
Priority to JP2019529304A priority patent/JP2019527737A/en
Publication of WO2018027316A1 publication Critical patent/WO2018027316A1/en
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    • A61K38/19Cytokines; Lymphokines; Interferons
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Definitions

  • the present disclosure relates to recombinant oncolytic rhabdoviruses expressing interleukin-12.
  • Oncolytic Viruses are promising anti-cancer therapeutics engineered or selected to infect and multiply in tumour cells while having attenuated replication capacity in normal tissues.
  • One feature important to the efficacy of some OVs is the ability to stimulate an anti-tumour immune response.
  • Vaccination of patients with their own cancer cells has been tried in the past with variable success (1 , 2).
  • BCG Bacillus Colmette- Guerin
  • Cytokines such as IL-12 have also been used to direct an anti-tumour immune response but the short half-life of these cytokines, when administered as proteins, and the dose-limiting toxicities encountered following systemic administration have diminished their potential effectiveness (5). That said, the strong immunological rationale for cytokine based vaccines continues to drive the development of novel experimental approaches in numerous laboratories world-wide. INTRODUCTION
  • a common problem in the use of oncolytic viruses for treatment of cancer is insufficient anti-tumour immune activation using the virus as a single agent.
  • OVs capable of anti-tumour immune activation.
  • Such OVs may be used in an autologous cell vaccine having an improved immune response in the tumour microenvironment.
  • the present disclosure attempts to address or ameliorate one or more shortcomings involved with the oncolytic virus treatment of cancer by providing a Maraba virus whose genome includes a nucleic acid sequence that encodes, or nucleic acid sequences that encode, interleukin-12 (IL12) or a functional portion thereof. Expression of the IL12 protein or functional portion thereof may enhance the immunogenicity of tumour cells infected with the Maraba virus.
  • IL12 interleukin-12
  • Interleukin 12 is also known as natural killer cell stimulatory factor (NKSF) or cytotoxic lymphocyte maturation factor (CLMF).
  • IL-12 is a heterodimeric cytokine containing two disulfide-linked subunits, p35 and p40.
  • the sequences of the human p35 and p40 proteins are shown in SEQ ID NOs: 1 and 2, respectively.
  • the sequences of the murine p35 and p40 proteins are shown in SEQ ID NOs: 3 and 4, respectively.
  • Human and murine IL-12 share 60% and 70% amino acid sequence identity in their p35 and p40 subunits, respectively.
  • the disulfide-linked murine p40 homodimer can bind to IL-12 receptors and can act as an antagonist of IL-12 activities in vitro.
  • the murine p40 monomer may still act as an IL-12 antagonist, though at a reduced activity in comparison to the activity of the homodimer.
  • such monomers and homodimers of p40 would be considered to be functional portions of IL12.
  • the IL12 or functional portion thereof encoded by the Maraba virus may have sequences that substantially correspond to the human p35 and p40 sequences.
  • the IL12 or functional portion thereof encoded by the Maraba virus may have sequences that substantially correspond to the murine p35 and p40 sequences.
  • the IL12 or functional portion thereof encoded by the Maraba virus may have a sequence that is at least 60% identical to the wildtype human IL12, so long as the IL12 or functional portion thereof is able to: stimulate growth of T cells, NK cells, or both; enhance the lytic activity of human NK/lymphokine-activated killer cells; stimulate the production of IFN-gamma by resting human peripheral blood mononuclear cells (PBMCs); or any combination thereof.
  • PBMCs peripheral blood mononuclear cells
  • the IL12 may have a sequence that is a chimera of sequences of IL12 from different origins.
  • the IL12 encoded by the Maraba virus may have a sequence that substantially corresponds to the sequence of the human p35 monomer, and a sequence that substantially corresponds to the sequence of the murine p40 monomer.
  • the resulting heterodimer is a chimera of human and mouse IL12 subunits.
  • murine IL12 expressed by a Maraba virus retains its stimulative properties with human NK cells despite the murine IL12 and human IL12 sharing only 70% and 60% amino acid sequence identity in their p40 and p35 subunits, respectively.
  • expressions such as 'the IL12 sequence' should be understood to refer to the totality of the sequences of the subunits making up the dimeric protein, regardless of what order the subunits are listed in.
  • the rhabdovirus may be a variant of wildtype Maraba virus.
  • the wildtype is a variant of wildtype Maraba virus.
  • Maraba virus genome has a nucleotide sequence that encodes, from the 3' end to the 5' end, an N, a P, an M, a G and an L protein.
  • Maraba virus (SEQ ID Nos: 1 -6 of U.S.
  • a variant of wildtype Maraba virus according to the present disclosure may have a genome that has a nucleotide sequence that encodes the N, P, M, G and L proteins in a different order than 3'-N, P, M, G, L-5'.
  • a variant of Maraba virus may include: a mutation of the G protein at a position corresponding to position 242 of the wildtype sequence such as Q242R; and/or a mutation of the matrix (M) protein at a position corresponding to position 123 of the wildtype sequence such as L123W.
  • a variant of wildtype Maraba virus that includes both the Q242R mutation in the wildtype G protein, and the L123W mutation in the wildtype M protein may be referred to herein as "MG1 ".
  • the oncolytic Maraba MG 1 virus has been genetically modified with mutations in both the G and M proteins that make it hyper virulent in cancer cells with attenuation in normal cells (6).
  • a variant of wildtype Maraba virus may include both a genome having a nucleotide sequence with re-ordered N, P, M, G and L proteins, and one or both of the mutations of the G and M proteins discussed above.
  • the IL12 may be encoded by one or more nucleotide sequences that are positioned: before the nucleotide sequences encoding the N, P, M, G and L proteins; after the nucleotide sequences encoding the N, P, M, G and L proteins; or in between any of the nucleotide sequences encoding the N, P, M, G and L proteins.
  • a nucleotide sequence encoding both the p35 and p40 proteins may be positioned between the nucleotide sequences encoding a mutated G protein and an L protein.
  • a nucleotide sequence encoding p35 may be positioned between the nucleotide sequences encoding an M protein and a mutated G protein, while a nucleotide sequence encoding the p40 protein may be positioned between the nucleotide sequences encoding the mutated G protein and an L protein.
  • the present disclosure provides an infected cell vaccine
  • tumour cells from a patient are infected with an oncolytic rhabdovirus expressing IL12 or functional portion thereof.
  • an infected cell vaccine tumour cells are removed from a patient and infected with the oncolytic rhabdovirus in vitro.
  • the virus infected cells may then be administered to the patient as the Infected Cell Vaccine (ICV).
  • the oncolytic rhabdovirus may be a Maraba virus whose genome includes a nucleic acid sequence that encodes interleukin-12 (IL12) or functional portion thereof, as discussed herein.
  • the ICV may be administered intraperitoneally; intravenously; intranasally, intracranially, subcutaneously, intrathecally, intradermally, intrathoracically or
  • the IL12 or functional portion thereof expressed by the oncolytic rhabdovirus may be the same as the IL12 or functional portion thereof expressed by the Maraba virus discussed above.
  • the present disclosure contemplates any combination of: (i) changing the order of the proteins encoded by a wildtype rhadovirus; and (ii) positioning the nucleotide sequence or sequences encoding IL12 or a functional portion thereof between any of the genes encoding the rhabdovirus proteins.
  • the present disclosure provides a method for treating a cancer by administration of the disclosed Maraba virus, or the disclosed infected cell vaccine.
  • the present disclosure also provides the corresponding use of the disclosed Maraba virus, or the disclosed infected cell vaccine, for treating a cancer.
  • Fig. 1 is a diagram that shows the insertion of the IL12 gene between the
  • G and L genes of MG1 to form a recombinant MG1-IL12 oncolytic rhabdovirus are G and L genes of MG1 to form a recombinant MG1-IL12 oncolytic rhabdovirus.
  • FIG. 2 is an example demonstrating that the recombinant MG1 expressing
  • IL12 is as cytotoxic to B16F10 tumour cells at the indicated MOIs as MG1 alone.
  • FIG. 3 is an example demonstrating that the recombinant MG1 expressing
  • IL12 is as cytotoxic to CT26lacZ tumour cells at the indicated MOIs as MG1 alone.
  • FIG. 4 shows that an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 produce the IL12 cytokine as measured by ELISA.
  • FIG. 5 shows that an exemplary ICV comprising irradiated CT26lacZ tumour cells infected with recombinant MG1-IL12 produce the IL12 cytokine as measured by ELISA.
  • Fig. 6 demonstrates that lung homogenates of tumour naive mice administered an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 have increased levels of the IL12 cytokine as measured by ELISA.
  • Fig. 7 demonstrates that lung homogenates of tumour naive mice administered an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 have increased levels of the IFNv cytokine as measured by ELISA.
  • Fig. 8 shows the total number of CD3 + T cells does not change in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F 10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
  • Fig. 9 shows the total number of NK1.1 + cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
  • Fig. 10 shows the total number of NK1.1 + IFNy+ cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F 10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
  • Fig. 1 1 shows the total number of NK1.1 + granzymeB+ cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
  • Fig. 12 shows results of an ex vivo chromium release cytotoxicity assay of splenocytes isolated from tumour naive mice following treatment with MG1-IL12 ICV, demonstrating increased killing of target YAC1 cells.
  • Fig. 13 shows a decrease in B16F10 lung metastasis following IV administration of MG1-IL12 ICV to mice compared to administration of MG1 ICV without IL12, and to uninfected B16F10 cells.
  • Fig. 14 shows an increase in recruitment of NK (NK1.1 " CD3 ) cells in the peritoneal cavity of mice vaccinated with MG1-IL12 ICV.
  • Fig. 15 shows that the accumulating NK (NK1.1 " CD3 ) cells in the peritoneal cavity of mice vaccinated with MG1-IL12 ICV are activated as measured by CD69 staining.
  • Fig. 16 shows that mice vaccinated with MG1-IL12 ICV exhibit an increase in the percentage of rejection when challenged with RMA-S tumour cells.
  • Fig. 17 shows an increase in survival of mice with peritoneal B16F10 tumours that have been vaccinated with MG1-IL12 ICV.
  • Fig. 18 demonstrates that the increased survival of tumour-bearing mice following vaccination with MG1-IL12 ICV is NK cell dependent as this effect is abrogated by NK cell depletion using an anti-NK1.1 antibody.
  • Fig. 19 shows increased IFNy secretion by splenocytes isolated from naive mice and co-cultured with isolated Dendritic Cells (DCs) that have been stimulated with MG1-IL12 ICV.
  • DCs Dendritic Cells
  • Fig. 20 shows that the increase in IFNy secretion by splenocytes isolated from naive mice and co-cultured with isolated DCs that have been stimulated with MG1- IL12 ICV is primarily due to the NK cell population.
  • Fig. 21 shows the results of a chemotaxis assay demonstrating an increase in migration of isolated naive NK cells into cell free media conditioned with isolated DCs that have been stimulated with MG 1 -IL12 ICV.
  • Fig 22 demonstrates that IP-10 chemokine is released into culture media following co-culture of DCs stimulated with MG1 -IL12 ICV.
  • Fig. 23 demonstrates that neutralization of IP-10 with IP-10 neutralizing antibodies abrogates NK cell chemotaxis induced in conditioned media with DCs stimulated by MG1 -IL12 ICV.
  • Fig. 24 illustrates the beneficial effect on survival of mice after initial tumour seeding and following vaccination with MG1 -IL12 ICV versus MG 1 ICV or treatment with either virus MG1 or recombinant virus MG 1 -IL12 alone.
  • Fig. 25 demonstrates that the increased survival following vaccination with
  • MG 1 -IL12 is accompanied by a corresponding decrease in the gross weight of peritoneal organs (including associated tumour burden).
  • Fig. 26 illustrates the beneficial effect on survival of mice with large advanced tumours vaccinated with MG1 -IL12 ICV biweekly for a period of three weeks.
  • Fig. 27 shows MRI scans for one representative mouse vaccinated with
  • Fig. 28 shows the increased activation of human NK cells in PBMCs cultured with SW620 cells infected with MG1 -IL12 ICV.
  • Fig. 29 demonstrates that the stimulatory effects of cell free conditioned media prepared from PBMCs cultured with SW620 cells infected with MG1 -IL12 ICV elicit increased migration in human NK cells.
  • Fig. 30 shows increased IP-10 chemokine production following co-culture of human PBMCs with SW620 cells infected with MG 1 -IL12 ICV.
  • Fig. 31 shows an enhanced ex vivo cytotoxicity of isolated NK cells from human cancer patients that were cultured with SW620 cells infected with MV1 -IL12 ICV at an effector:target ratio of 50: 1 .
  • Fig. 32 shows an enhanced ex vivo cytotoxicity of isolated NK cells from human cancer patients that were cultured with SW620 cells infected with MG1 -IL12 ICV at an effector:target ratio of 30: 1 .
  • Fig. 33 shows an increase in the total number of NK1.1 + IFNv + cells in the spleen of tumour naive mice after systemic IV treatment with MG 1 -IL12 ICV.
  • Fig. 34 shows an increase in the total number of NK1 .1 + GramzymeB + cells in the spleen of tumour naive mice after systemic IV treatment with MG1 -IL12 ICV.
  • Fig. 35 shows results of an ex vivo chromium release cytotoxicity assay using an individual healthy patient PBMCs cultured with K562 cells infected with MG1-IL12.
  • Fig. 36 shows results of an ex vivo chromium release cytotoxicity assay using an individual healthy patient PBMCs cultured with K562 cells infected with MG1- IL12.
  • Fig. 37 shows results of an ex vivo chromium release cytotoxicity assay using an individual cancer patient PBMCs cultured with K562 cells infected with MG1- IL12.
  • Fig. 38 shows results of an ex vivo chromium release cytotoxicity assay using an individual cancer patient PBMCs cultured with K562 cells infected with MG1- IL12.
  • Fig. 39 shows the differential efficacy of using different routes of MG1-IL12
  • Fig. 40 illustrates a proposed model for the mechanism of NK cell recruitment and activation following vaccination with MG1-IL12 ICV.
  • the present disclosure provides: a Maraba virus whose genome includes a transgene sequence that encodes the cytokine IL12; an infected cell vaccine (ICV) where autologous tumour cells from a patient are infected ex vivo with an oncolytic recombinant rhabdovirus expressing IL12; a method to treat a cancer through administration of the Maraba virus or the infected cell vaccine; and use of the Maraba virus or the infected cell vaccine for treating a cancer.
  • ICV infected cell vaccine
  • PC Peritoneal carcinomatosis
  • One aspect of the present disclosure may overcome one or more of these challenges by enhancing the anti tumour immune response of an oncolytic virus.
  • the patients' tumour cells are infected ex vivo with an oncolytic rhabdovirus expressing the cytokine IL12. These infected cells are then re-administered to the patient as an Infected Cell Vaccine (ICV).
  • ICV Infected Cell Vaccine
  • IL12 in situ reduces the half-life and/or toxicity drawbacks associated with high dose administration of IL12.
  • the authors of the present disclosure believe that expression of the IL12 acts to recruit and stimulate NK cells to the tumour site, and reduce the size of the tumour.
  • the activation of NK cells, the adaptive arm of the immune response may confer a long-term memory and thereby reduce the possibility that the tumour will return.
  • SW620 colorectal adenocarcinoma, human HCT15 colorectal adenocarcinoma, human A549 lung carcinoma, murine YAC-1 lymphoma, human K562 leukemic cell lines (all from American Type Tissue Collection) were propagated in Dulbecco's modified Eagle's medium (Hyclone) for the adherent cell lines, or Roswell Park Memorial Institutes Media (Hyclone) for non-adherent cell lines supplemented with 10% fetal calf serum (Cansera, Etobicoke, Ontario, Canada).
  • Rauscher murine leukemia virus-induced T-cell lymphoma (RMA) and RMA-S (MHC-deficient variant of RMA) were obtained from Dr.
  • mice 6- to 8 weeks old were purchased from Charles River Laboratories (Wilmington, MA). Animals were housed in pathogen-free conditions and all experiments were conducted with the approval of the University of Ottawa Animal Care and Veterinary Service.
  • Murine IL12 was PCR amplified from pORF-mlL-12 (IL-12elasti(p35::p40))
  • MG 1 -IL12 virus was rescued as described previously (10). Briefly, A549 were infected with vaccinia virus expressing T7 polymerase and subsequently transfected using Lipofectamine 2000 (Invitrogen, Burlington, ON, Canada) with 2 mg of MG1 -IL-12 DNA plasmid together with pCI-Neo plasmids encoding for Maraba N, P and L (1 , 1 .25, 0.25 mg, respectively). The rescued virus was passaged on SNB19 cells, then plaque purified, amplified and titered on Vera cells.
  • B16lacZ, CT26lacZ, SW620 and HCT15 cell lines were seeded into 96- well plates (2*10 4 cells/well). 24 hours later, cells were infected with MG1 or MG1 -IL12 viruses at Multiplicity of Infection (MOI) of 0.001-10 pfu/cell. Alamar Blue (Sigma-Aldrich, St Louis, MO) was added following 48 hours of incubation to a final concentration of 20 ⁇ g/ml. The absorbance was read at a wavelength of 570 nm after 6-hour incubation.
  • MOI Multiplicity of Infection
  • splenic and lung lymphocyte population analyses organs were harvested from mice and red blood cells lysed using ammonium chloride-potassium lysis (ACK) buffer.
  • the following monoclonal antibodies were used: anti-TCR-b (H57-597), anti-NK1 .1 (PK136), both from eBiosciences.
  • Spleen and lung NK cell IFN- ⁇ and Granzyme B secretion were analysed following a 1 hour GolgiPlug (BD Biosciences) incubation using: anti-CD3 (17A2), anti-NK1 .1 (PK136), anti-IFN- ⁇ (XMG1 .2) and anti- Granzyme B (16G6) all from BD Biosciences.
  • the monoclonal antibodies were used for human NK cell migration and activation are; anti-CD56 (HCD56) from Biolegend, anti- CD3 (UCHT1) and anti-CD69 (FN50) both are from eBiosciences. Fluorescence-activated cell sorting (FACS) acquisitions were conducted on a CyAn-ADP using Summit software (Beckman Coulter, Mississauga, Canada) and data were analyzed with Kaluza software (Beckman Coulter).
  • FACS Fluorescence-activated cell sorting
  • splenocytes were harvested from treated and control mice two days after treatment.
  • ACK buffer treated splenocytes were resuspended and mixed with chromium labelled YAC-1 cells at specified effector-to-target (E:T) ratios.
  • RMA and RMA-S were labeled with 5 and 0.5 mmol/L CFSE, respectively.
  • 1 x10 6 cells containing a 1 : 1 mixture of each cell type was injected i.p. into C57BL/6 mice 24 hrs following ICV treatment.
  • Peritoneal cells were collected the following day (24 hr) by washing the peritoneum with 5 mL of PBS containing 2 mmol/L EDTA. Collected cells were analysed by flow cytometry for the presence of CFSE-labeling.
  • DCs bone marrow-derived dendritic cells
  • FlowCytomix (eBioscience) kits as per manufacturer's instructions.
  • lungs from C57BI/6 mice treated with irrB16, MG 1 ICV or MG 1 -IL12 ICV at 5x10 5 cells/1 OOul/mouse i.v. were resected and homogenized in 1 ml PBS 24-hours after treatment.
  • Murine MCP-1 , SDF-1 and IP-10 chemokines were assayed 18 hours post ICV treatment from the peritoneal fluids of C57BI/6 mice (in vivo) or from tissue culture supernatant using ELISArray kits (SABiosciences) as per manufacturer's instructions.
  • Tissue culture supernatants for assessment of chemokines or chemotaxis assay were generated in DC media.
  • Chemotaxis of NK cells was assessed using a Transwell system as described previously (13). Briefly, 500ul of conditioned media from DC cultures was added to the lower chamber of Transwell plates with 5-um pores (Costar, Corning). 3x10 5 of DX5 + sorted NK cells were added to the upper chamber, and plates were incubated for 3 hours at 37°C. Cells in the lower chambers were harvested, stained with trypan blue and counted. A migration percentage was calculated as (total number NK cells in bottom chamber / total number NK cell input) x 100. To calculate NK cell index: (NK cell migration percentage / NK cell migration percentage from media alone group).
  • Conditioned media were generated in DC media through direct ICV-
  • DC-MG1-IL-12-ICV were isolated by MACS CD1 1 c + selection (Miltenyi).
  • CT26 and B16F10 Peritoneal carcinomatosis in BALB/c and C57BI/6 mice, respectively were treated with 1 x10 4 ICV on day 3 after seeding 5x10 5 tumour cells intraperitonealy.
  • 5x10 5 tumour cells were seeded within the peritoneum and the treatment regimen of six doses of ICV was initiated following Magnetic Resonance (MR) scan confirmation of a tumour with a size of >3 mm.
  • MR Magnetic Resonance
  • MR pulse sequences were used: one localizer and two fast spin echo (FSE) sequences in the coronal and axial planes.
  • the total MR scan time per mouse was approximately 15 minutes.
  • follow-up MR scans were performed one week, six weeks and thirteen weeks post-treatment start using the same MR scan parameters.
  • mice were vaccinated with single dose of 1 * 10 3 irrB16, MG1 ICV or MG1-IL-12-ICV ip The following day, mice were challenged with 3x10 5 B16F10-LacZ cells IV, sacrificed at 4 days after tumour cells injection followed by staining and quantification of lung metastases with X-gal (Bioshop, Burlington, Canada) as described previously (14). The total number of lung surface metastases was determined on all lung lobes using a stereomicroscope (Leica Microsystems, Concord, Canada).
  • a murine IL12 transgene (p70), which is composed of p35 and p40 sub- units, was incorporated into the backbone of the oncolytic Maraba virus variant MG1 to create MG1-IL12 ( Figure 1).
  • This replication competent oncolytic virus was found to infect both murine and human tumour cell lines with an efficiency comparable to parental MG1 and expression of IL12 did not negatively impact viral replication or spreading ( Figures 2 and 3).
  • IL12 was detected in the culture media of B16F10 (22 pg/cell) and CT26 (180 pg/cell) cells infected with MG1-IL12 ( Figures 4 and 5). Together these results demonstrate that MG1-IL-12 can successfully infect murine tumour cells resulting in viral replication and IL-12 secretion, resulting in an MG1-IL12 infected cell vaccine (ICV).
  • MG1-IL12 ICV enhances NK cell-mediated tumour rejection.
  • MG1-IL12 ICV Systemic delivery of MG1-IL12 ICV was sufficient to significantly attenuate the number of detectable lung metastasis in comparison to treatment with MG1 ICV or irradiated cells. These results suggest that MG1-IL12 ICV can stimulate NK cell recruitment and effector function to significantly improve the antitumour efficacy of the infected cell vaccines.
  • MG1-IL12 ICV Enhances NK cell Activation and Improves Survival in a Model of Peritoneal Carcinomatosis.
  • NK cell migration was further increased by media conditioned in the presence of DCs suggesting that DCs provide the stimuli for increased NK cell activation and migration.
  • the authors sought to identify which chemokines commonly secreted by DCs were mediating the observed effects.
  • MCP-1 monocytic chemotactic protein-1
  • SDF-1 stromal cell-derived factor-1 secretion
  • MG1-IL12 ICV was found to induce a significant increase in IP-10 (IFN-inducible Protein- 10) ( Figure 22).
  • IP-10 IFN-inducible Protein- 10
  • MG1-IL12 ICV is effective in treating established peritoneal disease in mice.
  • the route of vaccination plays an import role in MG1 -IL12 ICV conferred efficacy, in that treatment given intraperitoneally has superior efficacy compared to intravenous or subcutaneous injections (Figure 39).
  • MG1 -IL-12 ICV enhances human NK cell cytoxicity and migratory capacity.
  • MG 1-IL12 ICV resulted in a significant increase in the expression of CD69, an established marker of NK cell activation, in the NK cell (CD56 + CD3 ) subset of PBMCs ( Figure 28).
  • IP- 10 chemotactic protein secretion was also significantly increased in the supernatant of PBMCs co-culture with MG1 -IL12 ICV. This supernatant enhanced the migration of NK cells in the ex vivo transwell system suggesting that MG 1 -IL12 ICV vaccine elicits similar responses from NK cells of human and murine origin ( Figures 29 and 30).
  • Peritoneal carcinamatosis is used as an example of a cancer presentation that can be treated using a Maraba virus according to the present disclosure.
  • the authors believe that other tumour types, and tumours in other locations, would also be amenable to treatment with Maraba viruses and ICVs according to the present disclosure.
  • Humoral response to a viral glycan correlates with survival on PROSTVAC-VF. Proc Natl Acad Sci U S A 2014, 1 1 1 (17):E1749-1758.

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Abstract

Disclosed herein is an oncolytic recombinant Maraba virus whose genome comprises one or more nucleic acid sequences that, in combination, encode an interleukin-12 (IL12) protein or a functional portion thereof. A method for treating a cancer in a patient using the oncolytic recombinant Maraba virus is also disclosed. The present disclosure also provides a tumour cell infected with an oncolytic rhabdovirus whose genome comprises one or more nucleic acid sequences that, in combination, encode an interleukin-12 (IL12) protein or a functional portion thereof, for use as an infected cell vaccine (ICV) for the treatment of a cancer. A method for treating a cancer in a patient using the infected cell vaccine is also disclosed.

Description

ONCOLYTIC RHABDOVIRUS EXPRESSING IL12
CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of priority of U.S. Provisional Patent
Application No. 62/372,406, filed August 9, 2016, the entire contents of which is hereby incorporated by reference.
FIELD
[0002] The present disclosure relates to recombinant oncolytic rhabdoviruses expressing interleukin-12.
BACKGROUND
[0003] The following paragraphs are not an admission that anything discussed in them is prior art or part of the knowledge of persons skilled in the art.
[0004] Oncolytic Viruses (OVs) are promising anti-cancer therapeutics engineered or selected to infect and multiply in tumour cells while having attenuated replication capacity in normal tissues. One feature important to the efficacy of some OVs is the ability to stimulate an anti-tumour immune response.
[0005] Vaccination of patients with their own cancer cells (autologous cell vaccine) has been tried in the past with variable success (1 , 2). Most have employed mixing the whole cell vaccine with non-specific adjuvants, such as Bacillus Colmette- Guerin (BCG), but difficulties in overcoming immune suppression within the tumour microenvironment have yielded limited results (3). Nonetheless, clinical trials have consistently shown that survival is significantly better in those patients that are able to mount an immune response to the whole cell vaccine, suggesting that when an immune response is generated, prognosis is improved (4).
[0006] Cytokines, such as IL-12 have also been used to direct an anti-tumour immune response but the short half-life of these cytokines, when administered as proteins, and the dose-limiting toxicities encountered following systemic administration have diminished their potential effectiveness (5). That said, the strong immunological rationale for cytokine based vaccines continues to drive the development of novel experimental approaches in numerous laboratories world-wide. INTRODUCTION
[0007] The following introduction is intended to introduce the reader to this specification but not to define any invention. One or more inventions may reside in a combination or sub-combination of the elements or method steps described below or in other parts of this document. The inventors do not waive or disclaim their rights to any invention or inventions disclosed in this specification merely by not describing such other invention or inventions in the claims.
[0008] A common problem in the use of oncolytic viruses for treatment of cancer is insufficient anti-tumour immune activation using the virus as a single agent.
[0009] There is a need in the field for means of treating cancer with OVs capable of anti-tumour immune activation. Such OVs may be used in an autologous cell vaccine having an improved immune response in the tumour microenvironment.
[0010] In one aspect, the present disclosure attempts to address or ameliorate one or more shortcomings involved with the oncolytic virus treatment of cancer by providing a Maraba virus whose genome includes a nucleic acid sequence that encodes, or nucleic acid sequences that encode, interleukin-12 (IL12) or a functional portion thereof. Expression of the IL12 protein or functional portion thereof may enhance the immunogenicity of tumour cells infected with the Maraba virus.
[0011] Interleukin 12 is also known as natural killer cell stimulatory factor (NKSF) or cytotoxic lymphocyte maturation factor (CLMF). IL-12 is a heterodimeric cytokine containing two disulfide-linked subunits, p35 and p40. The sequences of the human p35 and p40 proteins are shown in SEQ ID NOs: 1 and 2, respectively. The sequences of the murine p35 and p40 proteins are shown in SEQ ID NOs: 3 and 4, respectively. Human and murine IL-12 share 60% and 70% amino acid sequence identity in their p35 and p40 subunits, respectively. The disulfide-linked murine p40 homodimer can bind to IL-12 receptors and can act as an antagonist of IL-12 activities in vitro. The murine p40 monomer may still act as an IL-12 antagonist, though at a reduced activity in comparison to the activity of the homodimer. In the context of the present disclosure, such monomers and homodimers of p40 would be considered to be functional portions of IL12.
[0012] The IL12 or functional portion thereof encoded by the Maraba virus may have sequences that substantially correspond to the human p35 and p40 sequences. The IL12 or functional portion thereof encoded by the Maraba virus may have sequences that substantially correspond to the murine p35 and p40 sequences. The IL12 or functional portion thereof encoded by the Maraba virus may have a sequence that is at least 60% identical to the wildtype human IL12, so long as the IL12 or functional portion thereof is able to: stimulate growth of T cells, NK cells, or both; enhance the lytic activity of human NK/lymphokine-activated killer cells; stimulate the production of IFN-gamma by resting human peripheral blood mononuclear cells (PBMCs); or any combination thereof.
[0013] The IL12 may have a sequence that is a chimera of sequences of IL12 from different origins. For example, the IL12 encoded by the Maraba virus may have a sequence that substantially corresponds to the sequence of the human p35 monomer, and a sequence that substantially corresponds to the sequence of the murine p40 monomer. The resulting heterodimer is a chimera of human and mouse IL12 subunits. As illustrated in the examples, murine IL12 expressed by a Maraba virus retains its stimulative properties with human NK cells despite the murine IL12 and human IL12 sharing only 70% and 60% amino acid sequence identity in their p40 and p35 subunits, respectively.
[0014] In the context of the present disclosure, expressions such as 'the IL12 sequence' should be understood to refer to the totality of the sequences of the subunits making up the dimeric protein, regardless of what order the subunits are listed in.
Accordingly, it should be understood that the discussion above about the IL12 encoded by the Maraba virus having a sequence that is at least 60% identical to the wildtype human IL12 compares the combination of sequences of p35 and p40 encoded by the Maraba virus with the combination of sequences of p35 and p40 of the wildtype human IL12.
[0015] The rhabdovirus may be a variant of wildtype Maraba virus. The wildtype
Maraba virus genome has a nucleotide sequence that encodes, from the 3' end to the 5' end, an N, a P, an M, a G and an L protein. Maraba virus (SEQ ID Nos: 1 -6 of U.S.
Patent No. 8,481 ,023, incorporated herein by reference; HQ660076.1) A variant of wildtype Maraba virus according to the present disclosure may have a genome that has a nucleotide sequence that encodes the N, P, M, G and L proteins in a different order than 3'-N, P, M, G, L-5'. A variant of Maraba virus may include: a mutation of the G protein at a position corresponding to position 242 of the wildtype sequence such as Q242R; and/or a mutation of the matrix (M) protein at a position corresponding to position 123 of the wildtype sequence such as L123W. A variant of wildtype Maraba virus that includes both the Q242R mutation in the wildtype G protein, and the L123W mutation in the wildtype M protein, may be referred to herein as "MG1 ". A Maraba virus containing a substitution at amino acid 242 of the G protein and/or at amino acid 123 of the M protein as described at col. 2, lines 24-42 of U.S. Patent No. 9,045,729, the entire contents of which are incorporated herein by reference. The oncolytic Maraba MG 1 virus has been genetically modified with mutations in both the G and M proteins that make it hyper virulent in cancer cells with attenuation in normal cells (6). A variant of wildtype Maraba virus may include both a genome having a nucleotide sequence with re-ordered N, P, M, G and L proteins, and one or both of the mutations of the G and M proteins discussed above.
[0016] The IL12 may be encoded by one or more nucleotide sequences that are positioned: before the nucleotide sequences encoding the N, P, M, G and L proteins; after the nucleotide sequences encoding the N, P, M, G and L proteins; or in between any of the nucleotide sequences encoding the N, P, M, G and L proteins. For example, a nucleotide sequence encoding both the p35 and p40 proteins may be positioned between the nucleotide sequences encoding a mutated G protein and an L protein. In another example, a nucleotide sequence encoding p35 may be positioned between the nucleotide sequences encoding an M protein and a mutated G protein, while a nucleotide sequence encoding the p40 protein may be positioned between the nucleotide sequences encoding the mutated G protein and an L protein.
[0017] For clarity, it should be understood that the present disclosure
contemplates any combination of: (i) changing the order of the proteins encoded by a Maraba virus; (ii) including mutations in the G and/or M proteins, as described above; and (iii) changing the position of the nucleotide sequence or sequences encoding IL12 or a functional portion thereof.
[0018] In another aspect, the present disclosure provides an infected cell vaccine
(ICV) where tumour cells from a patient are infected with an oncolytic rhabdovirus expressing IL12 or functional portion thereof. In an infected cell vaccine, tumour cells are removed from a patient and infected with the oncolytic rhabdovirus in vitro. The virus infected cells may then be administered to the patient as the Infected Cell Vaccine (ICV). The oncolytic rhabdovirus may be a Maraba virus whose genome includes a nucleic acid sequence that encodes interleukin-12 (IL12) or functional portion thereof, as discussed herein. The ICV may be administered intraperitoneally; intravenously; intranasally, intracranially, subcutaneously, intrathecally, intradermally, intrathoracically or
intramuscularly.
[0019] For clarity, it should be understood that the present disclosure
contemplates that the IL12 or functional portion thereof expressed by the oncolytic rhabdovirus may be the same as the IL12 or functional portion thereof expressed by the Maraba virus discussed above.
[0020] For clarity, it should also be understood that the present disclosure contemplates any combination of: (i) changing the order of the proteins encoded by a wildtype rhadovirus; and (ii) positioning the nucleotide sequence or sequences encoding IL12 or a functional portion thereof between any of the genes encoding the rhabdovirus proteins.
[0021] In other aspects, the present disclosure provides a method for treating a cancer by administration of the disclosed Maraba virus, or the disclosed infected cell vaccine. The present disclosure also provides the corresponding use of the disclosed Maraba virus, or the disclosed infected cell vaccine, for treating a cancer.
BRIEF DESCRIPTION OF THE DRAWINGS
[0022] Embodiments of the present disclosure will now be described, by way of example only, with reference to the attached Figures.
[0023] Fig. 1 is a diagram that shows the insertion of the IL12 gene between the
G and L genes of MG1 to form a recombinant MG1-IL12 oncolytic rhabdovirus.
[0024] Fig. 2 is an example demonstrating that the recombinant MG1 expressing
IL12 is as cytotoxic to B16F10 tumour cells at the indicated MOIs as MG1 alone.
[0025] Fig. 3 is an example demonstrating that the recombinant MG1 expressing
IL12 is as cytotoxic to CT26lacZ tumour cells at the indicated MOIs as MG1 alone.
[0026] Fig. 4 shows that an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 produce the IL12 cytokine as measured by ELISA.
[0027] Fig. 5 shows that an exemplary ICV comprising irradiated CT26lacZ tumour cells infected with recombinant MG1-IL12 produce the IL12 cytokine as measured by ELISA.
[0028] Fig. 6 demonstrates that lung homogenates of tumour naive mice administered an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 have increased levels of the IL12 cytokine as measured by ELISA.
[0029] Fig. 7 demonstrates that lung homogenates of tumour naive mice administered an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 have increased levels of the IFNv cytokine as measured by ELISA.
[0030] Fig. 8 shows the total number of CD3+ T cells does not change in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F 10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry. [0031] Fig. 9 shows the total number of NK1.1+ cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
[0032] Fig. 10 shows the total number of NK1.1+ IFNy+ cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F 10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
[0033] Fig. 1 1 shows the total number of NK1.1+ granzymeB+ cells increases in lungs of tumour naive mice treated with an exemplary ICV comprising irradiated B16F10 tumour cells infected with recombinant MG1-IL12 as measured by flow cytometry.
[0034] Fig. 12 shows results of an ex vivo chromium release cytotoxicity assay of splenocytes isolated from tumour naive mice following treatment with MG1-IL12 ICV, demonstrating increased killing of target YAC1 cells.
[0035] Fig. 13 shows a decrease in B16F10 lung metastasis following IV administration of MG1-IL12 ICV to mice compared to administration of MG1 ICV without IL12, and to uninfected B16F10 cells.
[0036] Fig. 14 shows an increase in recruitment of NK (NK1.1" CD3 ) cells in the peritoneal cavity of mice vaccinated with MG1-IL12 ICV.
[0037] Fig. 15 shows that the accumulating NK (NK1.1" CD3 ) cells in the peritoneal cavity of mice vaccinated with MG1-IL12 ICV are activated as measured by CD69 staining.
[0038] Fig. 16 shows that mice vaccinated with MG1-IL12 ICV exhibit an increase in the percentage of rejection when challenged with RMA-S tumour cells.
[0039] Fig. 17 shows an increase in survival of mice with peritoneal B16F10 tumours that have been vaccinated with MG1-IL12 ICV.
[0040] Fig. 18 demonstrates that the increased survival of tumour-bearing mice following vaccination with MG1-IL12 ICV is NK cell dependent as this effect is abrogated by NK cell depletion using an anti-NK1.1 antibody.
[0041] Fig. 19 shows increased IFNy secretion by splenocytes isolated from naive mice and co-cultured with isolated Dendritic Cells (DCs) that have been stimulated with MG1-IL12 ICV.
[0042] Fig. 20 shows that the increase in IFNy secretion by splenocytes isolated from naive mice and co-cultured with isolated DCs that have been stimulated with MG1- IL12 ICV is primarily due to the NK cell population. [0043] Fig. 21 shows the results of a chemotaxis assay demonstrating an increase in migration of isolated naive NK cells into cell free media conditioned with isolated DCs that have been stimulated with MG 1 -IL12 ICV.
[0044] Fig 22 demonstrates that IP-10 chemokine is released into culture media following co-culture of DCs stimulated with MG1 -IL12 ICV.
[0045] Fig. 23 demonstrates that neutralization of IP-10 with IP-10 neutralizing antibodies abrogates NK cell chemotaxis induced in conditioned media with DCs stimulated by MG1 -IL12 ICV.
[0046] Fig. 24 illustrates the beneficial effect on survival of mice after initial tumour seeding and following vaccination with MG1 -IL12 ICV versus MG 1 ICV or treatment with either virus MG1 or recombinant virus MG 1 -IL12 alone.
[0047] Fig. 25 demonstrates that the increased survival following vaccination with
MG 1 -IL12 is accompanied by a corresponding decrease in the gross weight of peritoneal organs (including associated tumour burden).
[0048] Fig. 26 illustrates the beneficial effect on survival of mice with large advanced tumours vaccinated with MG1 -IL12 ICV biweekly for a period of three weeks.
[0049] Fig. 27 shows MRI scans for one representative mouse vaccinated with
MG 1 -IL12 ICV demonstrating shrinking tumour burden over time.
[0050] Fig. 28 shows the increased activation of human NK cells in PBMCs cultured with SW620 cells infected with MG1 -IL12 ICV.
[0051] Fig. 29 demonstrates that the stimulatory effects of cell free conditioned media prepared from PBMCs cultured with SW620 cells infected with MG1 -IL12 ICV elicit increased migration in human NK cells.
[0052] Fig. 30 shows increased IP-10 chemokine production following co-culture of human PBMCs with SW620 cells infected with MG 1 -IL12 ICV.
[0053] Fig. 31 shows an enhanced ex vivo cytotoxicity of isolated NK cells from human cancer patients that were cultured with SW620 cells infected with MV1 -IL12 ICV at an effector:target ratio of 50: 1 .
[0054] Fig. 32 shows an enhanced ex vivo cytotoxicity of isolated NK cells from human cancer patients that were cultured with SW620 cells infected with MG1 -IL12 ICV at an effector:target ratio of 30: 1 .
[0055] Fig. 33 shows an increase in the total number of NK1.1 + IFNv+ cells in the spleen of tumour naive mice after systemic IV treatment with MG 1 -IL12 ICV.
[0056] Fig. 34 shows an increase in the total number of NK1 .1 + GramzymeB+ cells in the spleen of tumour naive mice after systemic IV treatment with MG1 -IL12 ICV. [0057] Fig. 35 shows results of an ex vivo chromium release cytotoxicity assay using an individual healthy patient PBMCs cultured with K562 cells infected with MG1-IL12.
[0058] Fig. 36 shows results of an ex vivo chromium release cytotoxicity assay using an individual healthy patient PBMCs cultured with K562 cells infected with MG1- IL12.
[0059] Fig. 37 shows results of an ex vivo chromium release cytotoxicity assay using an individual cancer patient PBMCs cultured with K562 cells infected with MG1- IL12.
[0060] Fig. 38 shows results of an ex vivo chromium release cytotoxicity assay using an individual cancer patient PBMCs cultured with K562 cells infected with MG1- IL12.
[0061] Fig. 39 shows the differential efficacy of using different routes of MG1-IL12
ICV administration in BALB/c mice following tumour seeding.
[0062] Fig. 40 illustrates a proposed model for the mechanism of NK cell recruitment and activation following vaccination with MG1-IL12 ICV.
DETAILED DESCRIPTION
[0063] Generally, the present disclosure provides: a Maraba virus whose genome includes a transgene sequence that encodes the cytokine IL12; an infected cell vaccine (ICV) where autologous tumour cells from a patient are infected ex vivo with an oncolytic recombinant rhabdovirus expressing IL12; a method to treat a cancer through administration of the Maraba virus or the infected cell vaccine; and use of the Maraba virus or the infected cell vaccine for treating a cancer. Without wishing to be bound by theory, the authors of the present disclosure believe that expression of the IL12 may enhance the anti-tumour immune response of the administered oncolytic virus.
[0064] Peritoneal carcinomatosis (PC) is one of the most common and problematic sites of metastases for abdominal malignancies, including gastrointestinal and ovarian cancers (7). It is a common cancer metastases that is associated with a significantly reduced quality of life, median survival rate and poor prognosis that requires new treatment options. PC poses challenges to the use of traditional chemotherapy, which cannot be used for patients who develop complications such as bowel obstruction (8). Another challenge in treating PC is the difficulty in delivering a therapeutic agent. Another obstacle to effective therapy is the toxicity and short half-life of
immunomodulating agents used systemically or delivered directly to the target site. [0065] One aspect of the present disclosure may overcome one or more of these challenges by enhancing the anti tumour immune response of an oncolytic virus. By way of example, in one particular embodiment, the patients' tumour cells are infected ex vivo with an oncolytic rhabdovirus expressing the cytokine IL12. These infected cells are then re-administered to the patient as an Infected Cell Vaccine (ICV). Without wishing to be bound by theory, the authors of the present disclosure believe that the infected tumour cells provide an immunostimulatory environment that is supplemented by the production of IL12. Expression of IL12 in situ reduces the half-life and/or toxicity drawbacks associated with high dose administration of IL12. The authors of the present disclosure believe that expression of the IL12 acts to recruit and stimulate NK cells to the tumour site, and reduce the size of the tumour. The activation of NK cells, the adaptive arm of the immune response, may confer a long-term memory and thereby reduce the possibility that the tumour will return.
[0066] Material and methods:
[0067] Cell lines and mice:
[0068] Murine CT26 colon carcinoma, murine B16F10 F10 melanoma, human
SW620 colorectal adenocarcinoma, human HCT15 colorectal adenocarcinoma, human A549 lung carcinoma, murine YAC-1 lymphoma, human K562 leukemic cell lines (all from American Type Tissue Collection) were propagated in Dulbecco's modified Eagle's medium (Hyclone) for the adherent cell lines, or Roswell Park Memorial Institutes Media (Hyclone) for non-adherent cell lines supplemented with 10% fetal calf serum (Cansera, Etobicoke, Ontario, Canada). Rauscher murine leukemia virus-induced T-cell lymphoma (RMA) and RMA-S (MHC-deficient variant of RMA) were obtained from Dr. A. Veillette (Institut de Recherches Clinique, Montreal, Quebec, Canada). Female Balb/C and C57BL/6 mice 6- to 8 weeks old were purchased from Charles River Laboratories (Wilmington, MA). Animals were housed in pathogen-free conditions and all experiments were conducted with the approval of the University of Ottawa Animal Care and Veterinary Service.
[0069] MG1 -IL12 construction:
[0070] Murine IL12 was PCR amplified from pORF-mlL-12 (IL-12elasti(p35::p40))
(InvivoGen, San Diego, CA, USA) to add Mlul (5') and (3') cloning sites to facilitate cloning into Maraba MG1 (9). The recombinant MG 1 -IL12 virus was rescued as described previously (10). Briefly, A549 were infected with vaccinia virus expressing T7 polymerase and subsequently transfected using Lipofectamine 2000 (Invitrogen, Burlington, ON, Canada) with 2 mg of MG1 -IL-12 DNA plasmid together with pCI-Neo plasmids encoding for Maraba N, P and L (1 , 1 .25, 0.25 mg, respectively). The rescued virus was passaged on SNB19 cells, then plaque purified, amplified and titered on Vera cells.
[0071] Viability assays:
[0072] B16lacZ, CT26lacZ, SW620 and HCT15 cell lines were seeded into 96- well plates (2*104 cells/well). 24 hours later, cells were infected with MG1 or MG1 -IL12 viruses at Multiplicity of Infection (MOI) of 0.001-10 pfu/cell. Alamar Blue (Sigma-Aldrich, St Louis, MO) was added following 48 hours of incubation to a final concentration of 20 μg/ml. The absorbance was read at a wavelength of 570 nm after 6-hour incubation.
[0073] Antibodies and FACS analysis:
[0074] For splenic and lung lymphocyte population analyses, organs were harvested from mice and red blood cells lysed using ammonium chloride-potassium lysis (ACK) buffer. The following monoclonal antibodies were used: anti-TCR-b (H57-597), anti-NK1 .1 (PK136), both from eBiosciences. Spleen and lung NK cell IFN-γ and Granzyme B secretion were analysed following a 1 hour GolgiPlug (BD Biosciences) incubation using: anti-CD3 (17A2), anti-NK1 .1 (PK136), anti-IFN-γ (XMG1 .2) and anti- Granzyme B (16G6) all from BD Biosciences. The monoclonal antibodies were used for human NK cell migration and activation are; anti-CD56 (HCD56) from Biolegend, anti- CD3 (UCHT1) and anti-CD69 (FN50) both are from eBiosciences. Fluorescence-activated cell sorting (FACS) acquisitions were conducted on a CyAn-ADP using Summit software (Beckman Coulter, Mississauga, Canada) and data were analyzed with Kaluza software (Beckman Coulter).
[0075] Ex vivo splenocytes cytotoxicity assay
[0076] The 5 Cr-release assay was performed as previously described (1 1).
Briefly, splenocytes were harvested from treated and control mice two days after treatment. ACK buffer treated splenocytes were resuspended and mixed with chromium labelled YAC-1 cells at specified effector-to-target (E:T) ratios.
[0077] In vivo tumour rejection assay
[0078] The in vivo rejection assay was performed as described previously (1 1).
Briefly, RMA and RMA-S were labeled with 5 and 0.5 mmol/L CFSE, respectively. 1 x106 cells containing a 1 : 1 mixture of each cell type was injected i.p. into C57BL/6 mice 24 hrs following ICV treatment. Peritoneal cells were collected the following day (24 hr) by washing the peritoneum with 5 mL of PBS containing 2 mmol/L EDTA. Collected cells were analysed by flow cytometry for the presence of CFSE-labeling. [0079] Virus infection of B16F10 cells and co-culture with bone marrow- derived DCs for chemotaxis and chemokines analysis
[0080] B16F10 cells infected with MG1 or MG1 -IL12 (MOI = 0.1 pfu/cell) were harvested 18 hrs after infection and cultured with bone marrow-derived dendritic cells (DCs) described elsewhere at a 3: 1 ratio in DC medium (1 % FBS) (complete RPMI supplemented with 1X of 2-Mercapoethanol (cat #21985-023, Gibco, life technologies) in 96-wells plates (12). Media was collected after 24 hours and stored at -80°C until further analysis.
[0081] Cytokine and chemokine analyses
[0082] Murine IFNY from DCs co-culture supernatant were detected by
FlowCytomix (eBioscience) kits as per manufacturer's instructions. For lungs IL12 and IFNy expression, lungs from C57BI/6 mice treated with irrB16, MG 1 ICV or MG 1 -IL12 ICV at 5x105 cells/1 OOul/mouse i.v., were resected and homogenized in 1 ml PBS 24-hours after treatment. Murine MCP-1 , SDF-1 and IP-10 chemokines were assayed 18 hours post ICV treatment from the peritoneal fluids of C57BI/6 mice (in vivo) or from tissue culture supernatant using ELISArray kits (SABiosciences) as per manufacturer's instructions.
[0083] Murine transwell chemotaxis assay
[0084] Tissue culture supernatants for assessment of chemokines or chemotaxis assay were generated in DC media. Chemotaxis of NK cells was assessed using a Transwell system as described previously (13). Briefly, 500ul of conditioned media from DC cultures was added to the lower chamber of Transwell plates with 5-um pores (Costar, Corning). 3x105 of DX5+ sorted NK cells were added to the upper chamber, and plates were incubated for 3 hours at 37°C. Cells in the lower chambers were harvested, stained with trypan blue and counted. A migration percentage was calculated as (total number NK cells in bottom chamber / total number NK cell input) x 100. To calculate NK cell index: (NK cell migration percentage / NK cell migration percentage from media alone group).
[0085] Human transwell chemotaxis assay
[0086] Conditioned media were generated in DC media through direct ICV-
PBMCs co-culture at 3: 1 ratio for 18 hours. 1 x106 of PBMCs were added to the upper chamber, and plates were incubated for 3 hours at 37°C. Cells in the lower chambers were harvested, stained with anti-CD56 (HCD56) and anti-CD3 (UCHT1) and quantified by FACS. A migration percentage was calculated as (total number NK cells in bottom chamber / total number NK cell input) x 100. To calculate NK cell index: (NK cell migration percentage / NK cell migration percentage from media alone group).
[0087] DC-MG1-IL-12-ICV/splenocytes co-cultures
[0088] DC-MG1-IL-12-ICV were isolated by MACS CD1 1 c+ selection (Miltenyi
Biotec) and co-cultured with naive splenocytes at 1 :5 ratio in DC medium, at 2x105 splenocytes/well in 96-well plate format. Twenty-four hours later, cell-free supernatant was stored at -80°C for measurement of IFNy. Intracellular IFNy staining on splenocytes by intracellular FACS was also performed as described above.
[0089] Mouse models:
[0090] Therapeutic treatment model.
[0091] CT26 and B16F10 Peritoneal carcinomatosis in BALB/c and C57BI/6 mice, respectively were treated with 1 x104 ICV on day 3 after seeding 5x105 tumour cells intraperitonealy. For the CT26 bulky tumour model, 5x105 tumour cells were seeded within the peritoneum and the treatment regimen of six doses of ICV was initiated following Magnetic Resonance (MR) scan confirmation of a tumour with a size of >3 mm. Animals were sedated with isoflurane gas and MR scanning was performed with a 7 Tesla GE/Agilent MR 901 (GE Healthcare, Chicago, USA). For each mouse, three MR pulse sequences were used: one localizer and two fast spin echo (FSE) sequences in the coronal and axial planes. The parameters for the FSE sequences were: echo train length 8, bandwidth=16 kHz, echo time=42ms, repetition time=1500ms, field of view=35mm, matrix 256x256, slice thickness=1 mm. The total MR scan time per mouse was approximately 15 minutes. Follow-up MR scans were performed one week, six weeks and thirteen weeks post-treatment start using the same MR scan parameters.
[0092] Prophylactic treatment model.
[0093] C57BI/6 mice were vaccinated with single dose of 1 * 103 irrB16, MG1 ICV or MG1-IL-12-ICV ip The following day, mice were challenged with 3x105 B16F10-LacZ cells IV, sacrificed at 4 days after tumour cells injection followed by staining and quantification of lung metastases with X-gal (Bioshop, Burlington, Canada) as described previously (14). The total number of lung surface metastases was determined on all lung lobes using a stereomicroscope (Leica Microsystems, Concord, Canada).
[0094] Statistical analysis
[0095] All statistical analyses were determined using GraphPad Prism 6.0 software. Statistical significance was determined by the Student t test with a cut off P = 0.05. Data are presented as ±SD. [0096] Characterization of an MG1 oncolytic virus encoding murine IL12
(MG1-IL12)
[0097] A murine IL12 transgene (p70), which is composed of p35 and p40 sub- units, was incorporated into the backbone of the oncolytic Maraba virus variant MG1 to create MG1-IL12 (Figure 1). This replication competent oncolytic virus was found to infect both murine and human tumour cell lines with an efficiency comparable to parental MG1 and expression of IL12 did not negatively impact viral replication or spreading (Figures 2 and 3). Furthermore, IL12 was detected in the culture media of B16F10 (22 pg/cell) and CT26 (180 pg/cell) cells infected with MG1-IL12 (Figures 4 and 5). Together these results demonstrate that MG1-IL-12 can successfully infect murine tumour cells resulting in viral replication and IL-12 secretion, resulting in an MG1-IL12 infected cell vaccine (ICV).
[0098] Examples
[0099] MG1-IL12 ICV enhances NK cell-mediated tumour rejection.
[00100] The authors of the present disclosure have previously demonstrated that infecting autologous tumor cells ex vivo with oncolytic viruses can elicit a robust immune response against established, non-permissive, tumors in vivo (15). To determine whether MG1 and MG1-IL12 could similarly induce an immune response when used as an ICV, the authors intravenously (i.v.) injected 5x105 Y-irradiated B16F10 cells either mock infected or infected with MG1 or MG1-IL12. The authors have previously shown that i.v. administration of ICVs is associated with a rapid and dose-dependent accumulation of injected cells which persist in the lung for up to 1 day in tumor free animals (16).
Following ICV delivery, significantly higher levels of IL12 were detected in lung homogenates from mice receiving MGI-IL12 ICV in comparison to animals receiving cells alone or MG1 ICV (Figure 6, t = 24 hr). To determine whether the increased
concentrations of IL12 had any functional effect, the levels of the IL12 responsive cytokine IFNv were measured. In agreement with the increase in IL12, levels of IFNv were also elevated in the lungs of mice treated with MG1-IL12 ICV compared to mice receiving MG1 ICV or irradiated cells (Figure 7). Since IL12 targets both NK and T cells to promote IFNv secretion (17), the authors next sought to determine which cell types were responding to treatment with our MG1-IL12 ICV. Interestingly, vaccination with MG1-IL12 ICV was not found to impact the total number of T cells in the lung, however, a 3-fold increase in the total number of NK cells present in the lung was observed suggesting that MG1-IL12 ICV enhances NK cell recruitment (Figure 8 and 9). In addition, the total number of IFNv and granzyme B positive NK cells was increased approximately 7 and 4- fold respectively following injection of MG1-IL12 ICV indicating an increase in NK cell activation (Figure 10 and 1 1). To further examine the effect, the cytotoxic activity of NK cells against YAC-1 target cells was measured ex vivo and it was observed that splenocytes isolated from MG1-IL-12 ICV treated mice exhibited a significantly higher level of YAC-1 killing (Figure 12). These data supported a role for MG1-IL12 ICV in promoting NK cell recruitment to the site of delivery and a concomitant systemic activation of splenic NK cells (Figures 33 and 34). In order to determine if this effect translated into improved tumour clearance, B16F10 lung metastases were treated with either irradiated cells, MG1-IL12 ICV, or MG1 ICV alone by i.v. delivery (Figure 13). Systemic delivery of MG1-IL12 ICV was sufficient to significantly attenuate the number of detectable lung metastasis in comparison to treatment with MG1 ICV or irradiated cells. These results suggest that MG1-IL12 ICV can stimulate NK cell recruitment and effector function to significantly improve the antitumour efficacy of the infected cell vaccines.
[00101] MG1-IL12 ICV Enhances NK cell Activation and Improves Survival in a Model of Peritoneal Carcinomatosis.
[00102] The initial findings suggest that the improved anti-tumor response elicited by MG1-IL12 ICV in comparison to MG1 ICV are in part due to potent chemotactic properties of IL12 which contribute to the enhanced recruitment of cytotoxic NK cells to the site of delivery (Figures 9,10 and 1 1). Therefore, the authors next sought to assess whether vaccinating mice i.p. with MG1-IL12 ICV could improve clearance of tumors within the peritoneal cavity and promote improved survival. Similar to their previous observations with i.v. vaccination, the authors observed an increased proportion of NK cells (19% vs 49%, p = 0.0073) in the peritoneum 24 hours after i.p. vaccination as compared to MG1 ICV (Figure 14). The infiltrating NK cells also displayed a significant upregulation of the activation marker CD69 indicating that the NK cells accumulating in the peritoneum in MG1-IL12 ICV vaccinated mice were more highly activated (Figure 15) (18, 19). To complement these findings, an in-vivo NK cell cytotoxicity assay was performed by challenging vaccinated mice with the NK-sensitive RMA-S and parental RMA tumour cell lines to investigate whether the activated NK cells that migrated into the peritoneal cavity were tumorcidal. Following vaccination with MG1-IL12 ICV, tumour cell clearance was significantly improved demonstrating that ICV-mediated recruitment and activation of NK cells can effectively promote tumor cell clearance from the peritoneum (Figure 16). In support of this conclusion, the protective effect of vaccinating mice bearing B16F10 peritoneal tumors with MG1-IL12 ICV was completely abrogated upon depletion of NK cells further suggesting that the therapeutic benefit of this treatment strategy is dependent upon NK cell recruitment and activation (Figure 17 and 18). [00103] NK cell activation and migration in response to MG1-IL12 ICV is partly dependent upon the secretion of IP10 from Dendritic cells.
[00104] The data clearly establish for the ability of MG1-IL12 ICV to promote NK cell activation, migration and function, however, it was unclear whether dendritic cells (DCs), a key mediator of NK cell function in vivo were involved in this process. To understand the interaction between NK cells and DC in the presence of MG1-IL12, the authors quantified IFNy production from splenocytes cultured in the presence of bone marrow derived DCs, which were either untreated or cultured with mock, MG1 , or MG1- IL12 infected B16F10 cells. Notably, the authors found that splenocytes cultured with DCs previously exposed to MG1-IL12 ICV resulted in a significant increase in NK cell-specific IFNy secretion suggesting DCs promote NK cell cytokine secretion (Figures 19 and 20). A subsequent step was to investigate the ability of DCs to promote NK cell migration using an in vitro transwell chemotaxis assay. The migration of NK cells across a 5 urn membrane was found to be significantly increased by either MG1 ICV or MG1-IL-12 ICV, however MG1-IL12 ICV resulted in a higher percentage of migrating NK cells (Figure 21). NK cell migration was further increased by media conditioned in the presence of DCs suggesting that DCs provide the stimuli for increased NK cell activation and migration. Next, the authors sought to identify which chemokines commonly secreted by DCs were mediating the observed effects. Despite the inability to detect any effect on MCP-1 (monocytic chemotactic protein-1) and SDF-1 (stromal cell-derived factor-1) secretion, MG1-IL12 ICV was found to induce a significant increase in IP-10 (IFN-inducible Protein- 10) (Figure 22). The neutralization of IP-10 in conditioned media derived from DCs cultured with MG1-IL12 ICV significantly inhibited the migratory capacity of NK cells in vitro confirming its central role (Figure 23).
[00105] MG1-IL12 ICV is effective in treating established peritoneal disease in mice.
[00106] Together the findings suggest that the MG1-IL12 ICV can significantly slow the outgrowth of B16F10 tumours within the peritoneal compartment by stimulating the recruitment of activated NK cells. Since peritoneal carcinomatosis is a common presentation for late stage gastrointestinal and gynecological malignancies, the authors of the present disclosure sought to determine whether the MG1-IL12 ICV could provide therapeutic benefit in a clinically relevant model of colon cancer (CT26) with peritoneal disease at time of treatment. To accomplish this BALB/c mice were seeded with CT26 tumour cells (Figure 24). Three days later mice were treated with a single dose of irradiated cells alone, virus alone or the infected cell vaccines. Mice treated with irradiated CT26 cells, MG 1 , MG1 -IL12 and MG 1 ICV all had significantly lower median survival times and increased peritoneal tumour burden in comparison to mice receiving MG1 -IL12 ICV (>90% 26 cured/28 of mice survived have survived > 200 days, Figures 24 and 25). Interestingly, the cured mice developed a long lasting immunity such that when the surviving mice were re-challenged with 5X105 CT26 cells on the flank, 148 days after treatment, they rejected the tumors (5/5 mice). However, this anti-tumor memory immune response was specific to CT26 tumors and all mice developed tumors (5/5 mice) when challenged with syngeneic 4T1 tumor cells on the opposite flank. Surprisingly, the route of vaccination plays an import role in MG1 -IL12 ICV conferred efficacy, in that treatment given intraperitoneally has superior efficacy compared to intravenous or subcutaneous injections (Figure 39).
[00107] Next, the authors sought to measure the effects of treatment in established bulky tumours. Between day 10 and 17 following implantation, tumors were visualized by MRI and mice bearing significant tumour masses (Class 1 > 8 mm and Class 2 > 3 mm) were randomly allocated into a treatment group prior to treatment with 6 doses of irradiated cells, MG1 ICV or MG 1 -IL12 ICV administered over a two week period (Figure 26). Despite the lethal tumour burden, evident by the loss of all animals treated with irradiated cells by day 15, MG1 -IL12 ICV provided complete protection (21/21 survived > 80 days, study ongoing). Strikingly, follow-up MRI scans which confirmed the presence of large tumour masses at the early stages of treatment were dramatically reduced at later time points (Figure 27). Collectively, these results demonstrate that MG1 -IL12 ICV is an effective approach for promoting the clearance of large, established tumours within the peritoneum in a murine model of peritoneal carcinomatosis.
[00108] MG1 -IL-12 ICV enhances human NK cell cytoxicity and migratory capacity.
[00109] Given the fact that murine p40 and p35 subunits of IL-12 share 70% and 60% homology with their human counterparts respectively, they are able to functionally activate human NK and T cells (20). The authors next sought to confirm that the vaccine could elicit a similar effect on human NK cells ex vivo. To accomplish this, irradiated SW620 colon cancer cells were infected with MG1 or MG 1 -IL12 and cultured with peripheral blood mononuclear cells (PBMCs) isolated from a healthy donor as part of a (Perioperative Blood Collection Protocol approved by the Ottawa Health Science Network Research Ethics Board #201 1884). In agreement with previous findings, MG 1-IL12 ICV resulted in a significant increase in the expression of CD69, an established marker of NK cell activation, in the NK cell (CD56+ CD3 ) subset of PBMCs (Figure 28). In addition, IP- 10 chemotactic protein secretion was also significantly increased in the supernatant of PBMCs co-culture with MG1 -IL12 ICV. This supernatant enhanced the migration of NK cells in the ex vivo transwell system suggesting that MG 1 -IL12 ICV vaccine elicits similar responses from NK cells of human and murine origin (Figures 29 and 30). Finally, stimulating PBMCs with MG1 -IL12 ICV resulted in an increased cytotoxic activity towards K562 target tumour cells suggesting that the activation and enhanced migratory capacity of human NK cells cultured in the presence of MG1 -IL12 ICV is associated with increased ability of to eradicate tumour cells (Figures 31 , 32, 35, 36, 37 and 38). Together these results provide support for the hypothesis that autologous infected tumour cell vaccines may provide a much needed therapeutic benefit in the treatment of patients with PC.
[00110] While the above examples demonstrate the efficacy of a particular Maraba virus in mice, the authors believe that Maraba viruses and ICVs according to the present disclosure will also address or ameliorate one or more shortcomings involved with oncolytic virus treatment of cancer in humans.
[00111] Peritoneal carcinamatosis is used as an example of a cancer presentation that can be treated using a Maraba virus according to the present disclosure. The authors believe that other tumour types, and tumours in other locations, would also be amenable to treatment with Maraba viruses and ICVs according to the present disclosure.
[00112] In the preceding description, for purposes of explanation, numerous details are set forth in order to provide a thorough understanding of the examples. However, it will be apparent to one skilled in the art that these specific details are not required.
Accordingly, what has been described is merely illustrative of the application of the described examples and numerous modifications and variations are possible in light of the above teachings.
[00113] Since the above description provides examples, it will be appreciated that modifications and variations can be effected to the particular examples by those of skill in the art. Accordingly, the scope of the claims should not be limited by the particular examples set forth herein, but should be construed in a manner consistent with the specification as a whole. REFERENCES
1. de Gruijl TD, van den Eertwegh AJ, Pinedo HM, Scheper RJ: Whole-cell cancer vaccination: from autologous to allogeneic tumor- and dendritic cell-based vaccines. Cancer Immunol Immunother 2008, 57(10):1569-1577.
2. Chiang CL, Coukos G, Kandalaft LE: Whole Tumor Antigen Vaccines: Where Are We? Vaccines (Basel) 2015, 3(2):344-372.
3. Srivatsan S, Patel JM, Bozeman EN, Imasuen IE, He S, Daniels D, Selvaraj P:
Allogeneic tumor cell vaccines: the promise and limitations in clinical trials. Hum Vaccin Immunother 2014, 10(1):52-63.
4. Campbell CT, Gulley JL, Oyelaran O, Hodge JW, Schlom J, Gildersleeve JC:
Humoral response to a viral glycan correlates with survival on PROSTVAC-VF. Proc Natl Acad Sci U S A 2014, 1 1 1 (17):E1749-1758.
5. Tugues S, Burkhard SH, Ohs I, Vrohlings M, Nussbaum K, Vom Berg J, Kulig P, Becher B: New insights into IL-12-mediated tumor suppression. Cell Death Differ 2015, 22(2):237-246.
6. Brun J, McManus D, Lefebvre C, Hu K, Falls T, Atkins H, Bell JC, McCart JA, Mahoney D, Stojdl DF: Identification of genetically modified Maraba virus as an oncolytic rhabdovirus. Mol Ther 2010, 18(8):1440-1449.
7. Mohamed F, Cecil T, Moran B, Sugarbaker P: A new standard of care for the management of peritoneal surface malignancy. Curr Oncol 201 1 , 18(2):e84-96.
8. Aoyagi T, Terracina KP, Raza A, Takabe K: Current treatment options for colon cancer peritoneal carcinomatosis. World J Gastroenterol 2014, 20(35): 12493- 12500.
9. Labbe A, Nelles M, Walia J, Jia L, Furlonger C, Nonaka T, Medin JA, Paige CJ: IL- 12 immunotherapy of murine leukaemia: comparison of systemic versus gene modified cell therapy. J Cell Mol Med 2009, 13(8B): 1962-1976.
10. Vaillant JC, Nordlinger B, Deuffic S, Arnaud JP, Pelissier E, Favre JP, Jaeck D, Fourtanier G, Grandjean JP, Marre P et al: Adjuvant intraperitoneal 5-fluorouracil in high-risk colon cancer: A multicenter phase III trial. Ann Surg 2000, 231 (4):449-456.
1 1. Mortarini R, Borri A, Tragni G, Bersani I, Vegetti C, Bajetta E, Pilotti S, Cerundolo V, Anichini A: Peripheral burst of tumor-specific cytotoxic T lymphocytes and infiltration of metastatic lesions by memory CD8+ T cells in melanoma patients receiving interleukin 12. Cancer Res 2000, 60(13):3559-3568.
12. Lutz MB, Kukutsch N, Ogilvie AL, Rossner S, Koch F, Romani N, Schuler G: An advanced culture method for generating large quantities of highly pure dendritic cells from mouse bone marrow. J Immunol Methods 1999, 223(1):77- 92.
13. Cheng M, Chen Y, Xiao W, Sun R, Tian Z: NK cell-based immunotherapy for malignant diseases. Cell Mol Immunol 2013, 10(3):230-252.
14. Ardolino M, Azimi CS, lannello A, Trevino TN, Horan L, Zhang L, Deng W, Ring AM, Fischer S, Garcia KC et al: Cytokine therapy reverses NK cell anergy in MHC- deficient tumors. J Clin Invest 2014, 124(1 1):4781-4794.
15. Lemay CG, Rintoul JL, Kus A, Paterson JM, Garcia V, Falls TJ, Ferreira L, Bridle BW, Conrad DP, Tang VA et al: Harnessing oncolytic virus-mediated antitumor immunity in an infected cell vaccine. Mol Ther 2012, 20(9): 1791 -1799.
16. Power AT, Wang J, Falls TJ, Paterson JM, Parato KA, Lichty BD, Stojdl DF, Forsyth PA, Atkins H, Bell JC: Carrier cell-based delivery of an oncolytic virus circumvents antiviral immunity. Mol Ther 2007, 15(1):123-130. Watford WT, Moriguchi M, Morinobu A, O'Shea JJ: The biology of IL-12: coordinating innate and adaptive immune responses. Cytokine Growth Factor Rev 2003, 14(5):361-368.
Hara T, Jung LK, Bjorndahl JM, Fu SM: Human T cell activation. III. Rapid induction of a phosphorylated 28 kD/32 kD disulfide-linked early activation antigen (EA 1 ) by 12-o-tetradecanoyl phorbol-13-acetate, mitogens, and antigens. J Exp Med 1986, 164(6): 1988-2005.
Lanier LL, Buck DW, Rhodes L, Ding A, Evans E, Barney C, Phillips JH: Interleukin 2 activation of natural killer cells rapidly induces the expression and phosphorylation of the Leu-23 activation antigen. J Exp Med 1988, 167(5): 1572- 1585.
Schoenhaut DS, Chua AO, Wolitzky AG, Quinn PM, Dwyer CM, McComas W, Familletti PC, Gately MK, Gubler U: Cloning and expression of murine IL-12. J Immunol 1992, 148(1 1):3433-3440.
Appendix A - Sequences:
SEQ ID NO:1 - Human IL12 p35 subunit
mwppgsasqp ppspaaatgl hpaarpvslq crlsmcpars lllvatlvll dhlslarnlp 61 vatpdpgmfp clhhsqnllr avsnmlqkar qtlefypcts eeidheditk dktstveacl 121 pleltknesc lnsretsfit ngsclasrkt sfmmalclss iyedlkmyqv efktmnakll 181 mdpkrqifld qnmlavidel mqalnfnset vpqkssleep dfyktkiklc illhafrira 241 vtidrvmsyl nas
SEQ ID NO:2 - Human IL12 p40 subunit
mchqqlvisw fslvflaspl vaiwelkkdv yweldwypd apgemvvltc dtpeedgitw 61 tldqssevlg sgktltiqvk efgdagqytc hkggevlshs llllhkkedg iwstdilkdq 121 kepknktflr ceaknysgrf tcwwlttist dltfsvkssr gssdpqgvtc gaatlsaerv 181 rgdnkeyeys vecqedsacp aaeeslpiev mvdavhklky enytssffir diikpdppkn 241 lqlkplknsr qvevsweypd twstphsyfs ltfcvqvqgk skrekkdrvf tdktsatvic 301 rknasisvra qdryysssws ewasvpcs
SEQ ID NO:3 - Mouse IL12 p35 subunit
mvsvptasps asssssqcrs smcqsryllf latlallnhl slarvipvsg parclsqsrn 61 llkttddmvk tareklkhys ctaedidhed itrdqtstlk tclplelhkn esclatrets 121 sttrgsclpp qktslmmtlc lgsiyedlkm yqtefqaina alqnhnhqqi ildkgmlvai 181 delmqslnhn getlrqkppv geadpyrvkm klcillhafs trwtinrvm gylssa
SEQ ID NO:4 - Mouse IL12 p40 subunit
mcpqkltisw faivllvspl mamwelekdv ywevdwtpd apgetvnltc dtpeedditw 61 tsdqrhgvig sgktltitvk efldagqytc hkggetlshs hlllhkkeng iwsteilknf 121 knktflkcea pnysgrftcs wlvqrnmdlk fniksssssp dsravtcgma slsaekvtld 181 qrdyekysvs cqedvtcpta eetlpielal earqqnkyen ystsffirdi ikpdppknlq 241 mkplknsqve vsweypdsws tphsyfslkf fvriqrkkek mketeegcnq kgaflvekts 301 tevqckggnv cvqaqdryyn sscskwacvp crvrs

Claims

WHAT IS CLAIMED IS:
1. A method for treating a cancer in a patient, the method comprising administering to the patient an oncolytic Maraba virus whose genome comprises one or more nucleic acid sequences that, in combination, encode an interleukin-12 (IL12) protein or a functional portion thereof.
2. The method of claim 1 , wherein the Maraba virus comprises a mutation in the G protein at a position corresponding to position 242 of the wildtype G protein, preferably where the amino acid, for example glutamine, has been changed to an arginine.
3. The method of claim 1 or 2, wherein the Maraba virus comprises a mutation in the M protein at a position corresponding to position 123 of the wildtype M protein, preferably where the amino acid, for example leucine, has been changed to a tryptophan.
4. The method of any one of claims 1-3, wherein:
the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype human IL12 sequence, such as 70%, 80%, 90%, 95%, 99% or 100% identical; or the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype murine IL12 sequence, such as 70%, 80%, 90%, 95%, 99%, or 100% identical.
5. The method of any one of claims 1-4, wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO:1 and SEQ ID NO:2, respectively.
6. The method of any one of claims 1-4, wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO:3 and SEQ ID NO:4, respectively.
7. The method of any one of claims 1-4, wherein the IL12 protein comprises a p40 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:1 or SEQ ID NO:3.
8. The method of any one of claims 1-4 and 7, wherein the IL12 protein comprises a p35 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:2 or SEQ ID NO:4.
9. The method of any one of claims 1-8, wherein the functional portion of the IL12 protein is a portion that is capable of: stimulating growth of T cells, NK cells, or both; enhancing the lytic activity of human NK/lymphokine-activated killer cells; stimulating the production of IFN-gamma by resting human PBMC; or any combination thereof.
10. The method of any one of claims 1 -9 wherein the virus is administered intravenously.
1 1. The method of any one of claims 1-9 wherein the virus is administered intraperitonealy
12. The method of any one of claims 1-9 wherein the virus is administered intratumourily.
13. The method of any one of claims 1 -9 wherein the virus is administered intrathecally.
14. The method of any one of claims 1-9 wherein the virus is administered intracranially.
15. The method of any one of claims 1 -9 wherein the virus is administered subcutaneously.
16. The method of any one of claims 1-9 wherein the virus is administered intrathoracically.
17. An oncolytic Maraba virus whose genome comprises one or more nucleic acid sequences that, in combination, encode an interleukin-12 (IL12) protein or a functional portion thereof.
18. The Maraba virus of claim 17, wherein the virus comprises a mutation in the G protein at a position corresponding to position 242 of the wildtype G protein, preferably where the amino acid, for example glutamine, has been changed to an arginine.
19. The Maraba virus of claim 17 or 18, wherein the virus comprises a mutation in the M protein at a position corresponding to position 123 of the wildtype M protein, preferably where the amino acid, for example leucine, has been changed to a tryptophan.
20. The Maraba virus of any one of claims 16-18, wherein:
the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype human IL12 sequence, such as 70%, 80%, 90%, 95%, 99% or 100% identical; or the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype murine IL12 sequence, such as 70%, 80%, 90%, 95%, 99%, or 100% identical.
21. The Maraba virus of any one of claims 17-20, wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO:1 and SEQ ID NO:2, respectively.
22. The Maraba virus of any one of claims 17-20, wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO:3 and SEQ ID NO:4, respectively.
23. The Maraba virus of any one of claims 17-20, wherein the IL12 protein comprises a p40 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:1 or SEQ ID NO:3.
24. The Maraba virus of any one of claims 17-20 and 23, wherein the IL12 protein comprises a p35 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:2 or SEQ ID NO:4.
25. The Maraba virus of any one of claims 17-24, wherein the functional portion of the IL12 protein is a portion that is capable of: stimulating growth of T cells, NK cells, or both; enhancing the lytic activity of human NK/lymphokine-activated killer cells; stimulating the production of IFN-gamma by resting human PBMC; or any combination thereof.
26. A tumour cell infected with an oncolytic rhabdovirus whose genome comprises one or more nucleic acid sequences that, in combination, encode an interleukin-12 (IL12) protein or a functional portion thereof, for use as an infected cell vaccine (ICV) for the treatment of a cancer.
27. The infected tumour cell of claim 26 wherein the rhabdovirus is a vesicular stomatitis virus (VSV), Arajas virus, Cocal virus, Isfahan virus, Maraba virus, Piry virus, Vesicular stomatitis Alagoas virus, BeAn 157575 virus, Boteke virus, Calchaqui virus, Eel virus American, Gray Lodge virus, Jurona virus, Klamath virus, Kwatta virus, La Joya virus, Malpais Spring virus, Mount Elgon bat virus, Perinet virus, Tupaia virus,
Farmington, Bahia Grande virus, Muir Springs virus, Reed Ranch virus, Hart Park virus, Flanders virus, Kamese virus, Mosqueiro virus, Mossuril virus, Barur virus, Fukuoka virus, Kern Canyon virus, Nkolbisson virus, Le Dantec virus, Keuraliba virus, Connecticut virus, New Minto virus, Sawgrass virus, Chaco virus, Sena Madureira virus, Timbo virus, Almpiwar virus, Aruac virus, Bangoran virus, Bimbo virus, Bivens Arm virus, Blue crab virus, Charleville virus, Coastal Plains virus, DakArK 7292 virus, Entamoeba virus, Garba virus, Gossas virus, Humpty Doo virus, Joinjakaka virus, Kannamangalam virus, Kolongo virus, Koolpinyah virus, Kotonkon virus, Landjia virus, Manitoba virus, Marco virus, Nasoule virus, Navarro virus, Ngaingan virus, Oak-Vale virus, Obodhiang virus, Oita virus, Ouango virus, Parry Creek virus, Rio Grande cichlid virus, Sandjimba virus, Sigma virus, Sripur virus, Sweetwater Branch virus, Tibrogargan virus, Xiburema virus, Yata virus, Rhode Island, Adelaide River virus, Berrimah virus, Kimberley virus, or Bovine ephemeral fever virus.
28. The infected tumour cell of claim 27, wherein the rhabdovirus is a Maraba virus, for example a Maraba virus according to any one of claims 17-25.
29. The infected tumour cell of claim 28 wherein the Maraba virus is a variant of wildtype Maraba virus that comprises both a Q242R mutation in the wildtype G protein, and an L123W mutation in the wildtype M protein.
30. The infected tumour cell of any one of claims 26-29 wherein:
the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype human IL12 sequence, such as 70%, 80%, 90%, 95%, 99% or 100% identical; or the IL12 protein has an amino acid sequence that is at least 60% identical to the wildtype murine IL12 sequence, such as 70%, 80%, 90%, 95%, 99%, or 100% identical.
31 . The infected tumour cell of any one of claims 26-30 wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO: 1 and SEQ ID NO:2, respectively.
32. The infected tumour cell of any one of claims 26-30 wherein the IL12 protein comprises p40 and p35 subunits corresponding to SEQ ID NO:3 and SEQ ID NO:4, respectively.
33. The infected tumour cell of any one of claims 26-30 wherein the IL12 protein comprises a p40 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:1 or SEQ ID NO:3.
34. The infected tumour cell of any one of claims 26-30 wherein the IL12 protein comprises a p35 subunit whose amino acid sequence is at least 60% identical to SEQ ID NO:2 or SEQ ID NO:4.
35. The infected tumour cell of any one of claims 26-34, wherein the functional portion of the IL12 protein is a portion that is capable of: stimulating growth of T cells, NK cells, or both; enhancing the lytic activity of human NK/lymphokine-activated killer cells;
stimulating the production of IFN-gamma by resting human PBMC; or any combination thereof.
36. A method for treating a cancer in a patient, the method comprising administering to the patient the infected tumour cell of any one of claims 26-35, wherein the tumor cell infected by the oncolytic virus is from the patient.
37. The method of claim 36, further comprising infecting a tumour cell from the patient with the oncolytic rhabdovirus whose genome comprises a nucleic acid sequence that encodes an interleukin-12 (IL12) protein or a functional portion thereof to generate the infected tumour cell.
38. The method of claim 36 or 37 wherein the infected tumour cell is administered intravenously.
39. The method of claim 36 or 37 wherein the infected tumour cell is administered intraperitonealy.
40. The method of claim 36 or 37 wherein the infected tumour cell is administered intratumourily.
41. The method of claim 36 or 37 wherein the infected tumour cell is administered intrathecally.
42. The method of claim 36 or 37 wherein the infected tumour cell is administered intracranially.
43. The method of claim 36 or 37 wherein the infected tumour cell is administered subcutaneously.
44. The method of claim 36 or 37 wherein the infected tumour cell is administered intrathoracically.
45. Use of the oncolytic Maraba virus according to any one of claims 17-25, or the infected tumour cell of any one of claims 26-35, for treating a cancer in a patient.
46. The oncolytic Maraba virus according to any one of claims 17-25, or the infected tumour cell of any one of claims 26-35, for treating a cancer in a patient.
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Cited By (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2019174610A1 (en) * 2018-03-14 2019-09-19 蔡立刚 Oncolytic virus and synthetic dna sequence, and application thereof
US10604574B2 (en) 2016-06-30 2020-03-31 Oncorus, Inc. Oncolytic viral delivery of therapeutic polypeptides
US11452750B2 (en) 2016-01-27 2022-09-27 Oncorus, Inc. Oncolytic viral vectors and uses thereof
US11612625B2 (en) 2017-07-26 2023-03-28 Oncorus, Inc. Oncolytic viral vectors and uses thereof
US11865081B2 (en) 2017-12-29 2024-01-09 Virogin Biotech Canada Ltd. Oncolytic viral delivery of therapeutic polypeptides
US12042534B2 (en) 2017-05-12 2024-07-23 Icahn School Of Medicine At Mount Sinai Newcastle disease viruses and uses thereof
US12391957B2 (en) 2018-08-17 2025-08-19 Icahn School Of Medicine At Mount Sinai Recombinant Newcastle disease viruses and uses thereof for the prevention of RSV disease or human metapneumovirus disease
WO2025208054A1 (en) * 2024-03-28 2025-10-02 Regeneron Pharmaceuticals, Inc. Recombinant rhabdovirus encoding interleukin-12 (il-12)
US12577585B2 (en) 2020-01-10 2026-03-17 Carogen Corporation Compositions and methods of use of oncolytic virus like vesicles

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
MX2022002547A (en) * 2019-09-02 2022-05-18 Univ Arizona State A NEW ONCOLYTIC VIRUS PLATFORM TO TREAT CANCER WITH MYXOMA VIRUS.
CN114901677A (en) * 2019-11-04 2022-08-12 艾诺奥医药品有限公司 Combination therapy for treating brain cancer
WO2021237352A1 (en) * 2020-05-26 2021-12-02 University Health Network Combination cytokines for methods and compositions for treating cancer
IL310808A (en) 2021-08-13 2024-04-01 Inovio Pharmaceuticals Inc Combined therapy for the treatment of brain cancer

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2005537802A (en) * 2002-09-09 2005-12-15 ユニバーシティ・オブ・テネシー・リサーチ・ファウンデーション Rhabdovirus recombinant mutant and method of use thereof
CA2663034C (en) * 2006-09-15 2016-05-03 Ottawa Health Research Institute Oncolytic rhabdovirus
CA2836117C (en) * 2009-12-10 2017-08-15 Ottawa Hospital Research Institute Oncolytic rhabdovirus

Non-Patent Citations (7)

* Cited by examiner, † Cited by third party
Title
ALKAYYAL, A. ET AL.: "Oncolytic Rhabdo Virus MG 1- IL 12 Enhances Anti-tumour Immunity", OTTAWA HOSPITAL RESEARCH INSTITUTE 2013 RESEARCH DAY, 14 November 2013 (2013-11-14), pages 1 - 94, XP055590214, Retrieved from the Internet <URL:http://www.ohri.ca/newsroom/photos/uploads/researchdaybooklet2013.pdf> [retrieved on 20171023] *
ALKAYYAL, A.A. ET AL.: "NK- cell recruitment is necessary for eradication of peritoneal carcinomatosis with an IL 12-expressing Maraba virus cellular vaccine", CANCER IMMUNOLOGY RESEARCH, vol. 5, no. 3, 3 February 2017 (2017-02-03), pages 211 - 221, XP055463382, ISSN: 2326-6066 *
LEMAY, C.G. ET AL.: "Harnessing oncolytic virus-mediated antitumor immunity in an infected cell vaccine", MOLECULAR THERAPY, vol. 20, no. 9, 3 July 2012 (2012-07-03), pages 1791 - 1799, XP055203283, ISSN: 1525-0016, Retrieved from the Internet <URL:doi:10.1038/mt.2012.128> *
LICHTY, B.D. ET AL.: "Going viral with cancer immunotherapy", NATURE REVIEWS CANCER, vol. 14, 3 July 2014 (2014-07-03), pages 559 - 567, XP055463372, ISSN: 1474-1768 *
See also references of EP3497208A4 *
SHIN, E.J. ET AL.: "Interleukin-12 expression enhances vesicular stomatitis virus oncolytic therapy in murine squamous cell carcinoma", LARYNGOSCOPE, vol. 117, no. 2, February 2007 (2007-02-01), pages 210 - 214, XP002588783, ISSN: 1531-4995, Retrieved from the Internet <URL:doi:10.1097/01.MLG.0000246194.66295.D8> *
ZHANG, J. ET AL.: "Maraba MG 1 virus enhances natural killer cell function via conventional dendritic cells to reduce postoperative metastatic disease", MOLECULAR THERAPY, vol. 22, no. 7, July 2014 (2014-07-01), pages 1320 - 1332, XP055463366, ISSN: 1525-0016 *

Cited By (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11452750B2 (en) 2016-01-27 2022-09-27 Oncorus, Inc. Oncolytic viral vectors and uses thereof
US10604574B2 (en) 2016-06-30 2020-03-31 Oncorus, Inc. Oncolytic viral delivery of therapeutic polypeptides
US11078280B2 (en) 2016-06-30 2021-08-03 Oncorus, Inc. Oncolytic viral delivery of therapeutic polypeptides
US12042534B2 (en) 2017-05-12 2024-07-23 Icahn School Of Medicine At Mount Sinai Newcastle disease viruses and uses thereof
US12208126B2 (en) 2017-07-26 2025-01-28 Virogin Biotech Canada Ltd. Oncolytic viral vectors and uses thereof
US11612625B2 (en) 2017-07-26 2023-03-28 Oncorus, Inc. Oncolytic viral vectors and uses thereof
US11865081B2 (en) 2017-12-29 2024-01-09 Virogin Biotech Canada Ltd. Oncolytic viral delivery of therapeutic polypeptides
CN111094324B (en) * 2018-03-14 2023-10-10 武汉博威德生物技术有限公司 An oncolytic virus, synthetic DNA sequence and application thereof
CN111094324A (en) * 2018-03-14 2020-05-01 武汉博威德生物技术有限公司 Oncolytic virus, synthetic DNA sequence and application thereof
WO2019174610A1 (en) * 2018-03-14 2019-09-19 蔡立刚 Oncolytic virus and synthetic dna sequence, and application thereof
US12391957B2 (en) 2018-08-17 2025-08-19 Icahn School Of Medicine At Mount Sinai Recombinant Newcastle disease viruses and uses thereof for the prevention of RSV disease or human metapneumovirus disease
US12577585B2 (en) 2020-01-10 2026-03-17 Carogen Corporation Compositions and methods of use of oncolytic virus like vesicles
WO2025208054A1 (en) * 2024-03-28 2025-10-02 Regeneron Pharmaceuticals, Inc. Recombinant rhabdovirus encoding interleukin-12 (il-12)

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