WO2019222812A1 - Circulatory biomarkers for placental or fetal health - Google Patents
Circulatory biomarkers for placental or fetal health Download PDFInfo
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- WO2019222812A1 WO2019222812A1 PCT/AU2019/050516 AU2019050516W WO2019222812A1 WO 2019222812 A1 WO2019222812 A1 WO 2019222812A1 AU 2019050516 W AU2019050516 W AU 2019050516W WO 2019222812 A1 WO2019222812 A1 WO 2019222812A1
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/689—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to pregnancy or the gonads
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/112—Disease subtyping, staging or classification
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
- G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
- G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
- G01N2333/4701—Details
- G01N2333/471—Pregnancy proteins, e.g. placenta proteins, alpha-feto-protein, pregnancy specific beta glycoprotein
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2800/00—Detection or diagnosis of diseases
- G01N2800/36—Gynecology or obstetrics
- G01N2800/368—Pregnancy complicated by disease or abnormalities of pregnancy, e.g. preeclampsia, preterm labour
Definitions
- the present invention relates generally to a protocol to clinically manage pregnancy in mammals including humans.
- the present invention provides diagnostic targets and reagents to facilitate clinical management of pregnancy thereby enabling improved pre- and post-natal health outcomes for fetuses developing in an environment of placental insufficiency.
- Fetal growth restriction also known as intrauterine growth restriction (IUGR)
- IUGR intrauterine growth restriction
- FGR is a failure of a fetus to reach its genetically pre-determined growth potential. It represents a very serious complication of pregnancy and, as indicated above, is the biggest risk factor for stillbirth - a devastating tragedy that affects 1 : 130 pregnancies in Australia.
- SGA gestational age
- FGR and being SGA at birth are associated outcomes of placental insufficiency.
- FGR is also a major determinant of perinatal morbidity, with low-birthweight infants experiencing poorer neurodevelopmental outcomes (Miller et al. (2016) The Journal of Physiology 594: 807-823). Moreover, FGR is associated with adverse outcomes later in life: school-aged children who were growth restricted have higher rates of impaired cognition, memory, attention and gross motor proficiencies (Miller et al. (2016) supra). Its effects can persist lifelong - adults have a higher prevalence of major chronic diseases such as cardiovascular disease, stroke and diabetes (Barker and Osmond (1986) Lancet /: 1077- 1081; Cooper et al.
- Placental insufficiency arises when the placenta fails to provide adequate oxygen and nutrient exchange to the fetus (Mifsud and Sebire (2014) Fetal diagnosis and therapy 56: 117-128).
- the fetus responds by decreasing its growth and redistributing resources to ensure survival; channelling blood to vital organs such as the brain.
- survival adaptations fail, stillbirth occurs.
- a major barrier to reducing the health burden of FGR is the inability to accurately identify SGA fetuses , where FGR cases are more common.
- Taught herein is an assay to monitor placental health enabling a determination of a level or state of placental insufficiency. This information is critical to the successful clinical management of a pregnancy in order to detect FGR and SGA babies. The ability to reliably detect such conditions including placental insufficiency can enable clinical intervention such as close fetal surveillance and earlier delivery.
- the present invention teaches that the biomarkers, SPINT1 and SYNDECAN1, individually or collectively are markers of the state of placental health. Low levels of either or both are an indicator of placental insufficiency. Elevated levels of either or both biomarkers can also be an indicator of a condition adversely affecting a fetus such as fetal macrosomia.
- an assay to determine the state of placental health in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and/or SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- an assay to determine the state of placental health in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and/or SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- an assay to detect abnormal fetal weight such as in macrosomia in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein an elevation in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of potential macrosomia.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for macrosomia in a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein an elevation over time in SPINT1 and/or SYDNECAN-l compared to a control or a statistically validated level or a change in ratio reflecting elevating placental insufficiency and macrosomia wherein the fetus is monitored or subject to earlier delivery.
- the determination of the concentrations or levels of the biomarkers enables establishment of a diagnostic rule based on the concentrations relative to controls.
- the diagnostic rule is based on the application of a statistical and machine learning algorithm or analytics function or process or other data processing means.
- Such an algorithm or analytics function or process or other data processing means uses relationships between biomarkers and state of placental sufficiency observed in training data (with known placental sufficiency status) to infer relationships which are then used to predict the status of patients with unknown status.
- An algorithm or analytics function or process or other data processing means may be employed which provides an index of probability that a patient has placental insufficiency.
- the algorithm or analytics function or process or other data processing means may perform a multivariate or monovariate analysis function or other statistical operation.
- the present invention provides a diagnostic rule based on the application of a statistical and machine learning algorithm or analytics function or process or other data processing means.
- a statistical and machine learning algorithm or analytics function or process or other data processing means uses the relationships between biomarkers and placental sufficiency or insufficiency status observed in training data (with known placental sufficiency status) to infer relationships which are then used to predict the status of patients with unknown placental sufficiency status.
- Practitioners skilled in the art of data analysis recognize that many different forms of inferring relationships in the training data may be used without materially changing the present invention.
- the present invention further contemplates a panel of biomarkers for the detection of placental insufficiency or state of placental health or dysfunction in a subject, the panel comprising agents which bind specifically to biomarkers, the biomarkers selected from SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker to determine levels of the biomarkers and then optionally subjecting the levels to an algorithm or analytics function or process or other data processing means generated from a first knowledge base of data comprising the levels of the same biomarkers from a subject of known status with respect to the conditions wherein the algorithm or analytics function or process or other data processing means provides an index of probability of the subject having or not having placental insufficiency.
- the biomarkers selected from SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomark
- the assay taught herein includes the determination of levels of SPINT1, SYNDECAN-l, SPINT1 and SYNDECAN-l and/or the determination of levels of SPINT1 and/or SYNDECAN-l with at least one other biomarker.
- Reference to at least one other biomarker includes but is not limited to one or more of placental growth factor (P1GF), soluble fms-like tyrosine kinase- 1 (sFlt) and/or vascular endothelial growth factor (VEGF) amongst other biomarkers and/or physiochemical parameters of placental insufficiency or its effects such as FGR (e.g. data for ultrasound).
- P1GF placental growth factor
- sFlt soluble fms-like tyrosine kinase- 1
- VEGF vascular endothelial growth factor
- the mammalian subject is a human female.
- the present invention extends to veterinary applications.
- circulating SPINT1 and/or SYNDECAN-l is determined in whole blood, plasma or serum.
- Other fluid may also be tested including ascites, lymph fluid or urine.
- the pregnancy clinically managed to maximize the health outcome of the fetus. This includes earlier delivery of the fetus.
- fetal macrosomia is suggested due to elevation in SPINT 1 and/or SYNDECAN-l with or without ultrasound or other physicochemical tests early delivery of the baby may be indicated.
- the assay of the present invention extends to the direct or indirect detection of the biomarker proteins or via RNA encoding the biomarkers and/or circulating RNA markers of placental insufficiency or its effects such as FGR.
- the present invention relates in an embodiment to monitoring for a reduction in levels of the biomarkers as an indicator of placental insufficiency
- the detection of elevated levels of SPINT1 and/or SYNDECAN-l is used as an indicator or predictor of fetal macrosomia and this forms part of the subject invention.
- Figures 1A through P are graphical representations showing circulating SPINT1 and SYNDECAN-l measured in plasma using commercially available ELISAs.
- SPINT1 from Sigma Aldrich and SYNDECAN-l from Thermo Fisher Scientific.
- sFLT-l and P1GF were measured using diagnostic test assays from Roche.
- a case control cohort was selected from patients who provided a blood sample at 36 weeks gestation.
- were significantly reduced in patients that delivered a SGA baby ⁇ 10 ⁇ i centile birthweight relative to the gestational age; A) with an area under the receiver operator curve (AUC) of 0.75 (B).
- 920 controls and 84 cases where the mother subsequently delivered a SGA infant.
- the inventors found that circulating SPINT1 was significantly reduced in women who subsequently delivered a SGA infant (I) with an AUC of 0.74 (J).
- Figures 2A through D are graphical representations showing birthweight centile for each study infant, which was customized accounting for maternal parity, booking weight, height, for infant sex, and for exact gestational age in days. To determine whether there was a relationship between birth weight and circulating SPINT1 levels, two data sets were graphed.
- Figure 2A shows that circulating maternal SPINT1 at 36 weeks gestation is associated with the subsequent birth centile of the infant - this correlation is plotted for each of the 1004 patients in panel B, where there is a statistically significant correlation.
- FIGS. 3A through P are graphical representations showing observational studies to determine whether placental SPINT1 is altered in cases of human SGA. To do this, a cohort of placentas was selected from either control, preeclamptic or SGA pregnancies. SPINT1 mRNA was measured using quantitative RT-PCR and showed that in patients who delivered their baby at ⁇ 34 weeks gestation SPINT1 mRNA was significantly reduced in both the PE and SGA cohort compared to controls (A).
- SRI31215 a commercially available SPINT1 mimetic called SRI31215 (Glixx laboratories) was administered to HTR8 cells and their proliferation monitored using the xCELLigence system. Indeed it was found that 5 or lOuM of SRI31215 enhanced HTR8 proliferation (P). Data expressed as mean +/- SEM - each symbol represents an individual patient or mouse *p ⁇ 0.05,**p ⁇ 0.0l, ***p ⁇ 0.00l ****p ⁇ 0.000l.
- Figures 4A through C are graphical representations showing that circulating SYNDECAN-l increases with birth centile of the infant (A). Maternal SYNDECAN-l is significantly associated with neonatal lean mass (B) and skinfold body fat percentage (C), measured a few days after birth.
- Figures 5A through E are graphical representations showing observational studies to determine whether placental SYNDECAN-l is altered in cases of human SGA.
- a cohort of placentas was selected from either control, preeclamptic or SGA pregnancies (same cohort used to measure SPINT1).
- SYNDECAN-l mRNA was measured using quantitative RT-PCR and showed that in patients who delivered their baby at ⁇ 34 weeks gestation, placental SYNDECAN-l mRNA was significantly increased in both the preeclamptic (PE) and small for gestational age (SGA) cohort compared to controls (A). Protein expression was subsequently measured.
- PE preeclamptic
- SGA small for gestational age
- FIGS 6A through F are diagrammatic representations of functional studies to determine whether placental SYNDECAN-l is altered by hypoxia and whether silencing its expression alters cellular proliferation.
- Panels A, B and C demonstrate that in primary human trophoblast, SYNDECAN-l mRNA (A) is significantly reduced under hypoxia, whilst cellular protein is not different (B).
- Secreted SYNDECAN-l protein is significantly reduced under hypoxia (C).
- D,E In pregnant mice exposed to hypoxia, there is no change in murine SYNDECAN-l within the placenta
- SYDECAN-l is silenced using siRNA in placental cell line HTR8 cells, cellular proliferation is impaired (F).
- Data expressed as mean +/- SEM - each symbol represents an individual patient *p ⁇ 0.05,**p ⁇ 0.0l.
- FIGS 7a through e show plasma SPINT1 at 36 weeks is associated with clinical markers of placental insufficiency.
- Plasma SPINT1 concentrations at 36 weeks’ gestation were correlated with uterine artery (ETA) Doppler flow resistance (a), lean mass of the neonate (b), and placental weight (c).
- ETA uterine artery
- a Doppler flow resistance
- b lean mass of the neonate
- c placental weight
- Plasma SPINT1 concentrations at 36 weeks were correlated with birth centiles (e).
- SPINT1 MoMs were combined for both cohort 1 and cohort 2 and grouped according to the birth centile.
- Graphs D and E depict median+/- interquartile range. Each individual symbol (c-e) represents a patient. ****r ⁇ 0 ⁇ 0001 relative to control (Mann-
- FIGs 8a through d show SPINT1 levels are not associated with umbilical artery resistance, and infant body fat percentage or fat mass.
- a sub-cohort of the entire FLAG cohort had infant body composition assessed after birth using the PEAPOD air displacement plethysmography device.
- SPINT1 concentrations were measured in plasma and serum samples of women who delivered a ⁇ l0th centile baby at ⁇ 34wks and compared to the concentration of SPINT1 from plasma and serum samples of healthy controls (plasma and serum samples were obtained at the same blood draw). The data show that, while SPINT1 was significant reduced in the serum of women with SGA, the degree of change was far less than that observed in plasma. Individual symbols represent an individual patient. ****r ⁇ 0.0001, *p ⁇ 0.05).
- Figures 9a through j show a comparison between the strength of association between SPINT1 or P1GF and clinical markers of placental insufficiency.
- plasma SPINT1 concentrations appeared to have a stronger association with birth weight centile (a vs f), placental weight (b vs g), lean mass (c vs h), and uterine artery resistance (d vs i), compared to than P1GF.
- a vs f birth weight centile
- b vs g placental weight
- lean mass c vs h
- d vs i uterine artery resistance
- Individual symbols represent an individual patient.
- Figures 10A through H show the association between SPINT1 or SYNDECAN-l and various clinical parameters of placental insufficiency in a larger cohort of samples obtained from up to 2040 women. Each symbol represents an individual patient.
- Figure D data expressed as median +/- interquartile range. ****p ⁇ 0.000l.
- FIGS 12A through D validate changes in plasma SPINT1 at 36 weeks and show the association with markers of placental insufficiency in a larger cohort.
- C placental weight
- Graph D depicts median+/- interquartile range.
- Each individual symbol (A-D) represents a patient. ****r ⁇ 0 ⁇ 0001 relative to control.
- SPINT1 A,B
- SYNDECAN-l was also significantly reduced in women carrying a SGA infant in this cohort (C,D) with an AUC of 0.644.
- the present invention relates to an assay to determine circulating levels of one or either or both of the biomarker SPINT1 and/or the biomarker SYNDECAN-l in a pregnant mammalian subject.
- SPINT1 and/or SYNDECAN-l may be assayed separately or together, alone or in combination with one or more other biomarkers and/or one or more physiochemical parameters such as data from an ultrasound.
- biomarkers are proposed to be indicators of placental insufficiency when present at a reduced level.
- When elevated, alone or in combination with one or more biomarkers and one or more physicochemical parameters such as data from an ultrasound it is proposed to indicate fetal weight abnormality, including, but not limited to, fetal macrosomia.
- the term "assay” includes but is not limited to a method, protocol, step or series of steps and/or a process for determining the level or velocity of SPINT1 and/or SYNDECAN- 1.
- the level of SPINT1 and/or SYNDECAN-l may be compared to a standardized control or may be compared to a statistically validated pre-determined level.
- An example of a standardized control is the level in a normal pregnant female subject of the same age and physical characteristics.
- the velocity includes a rate or extent of increase or decrease in the level of either biomarker.
- the level or velocity of SPINT1 and/or SYNDECAN-l may be expressed as a concentration level in an amount of, but not limited to, picogram, nanogram, microgram or milligram per volume of circulating fluid (generally in millilitres although may be expressed in any volume amount).
- the level or velocity of the biomarkers is rationalized in the form of a ratio between each other and/or a ratio between one or other and another biomarker such as placenta growth factor (P1GF) or soluble fms- like tyrosine kinase- 1 (sFlt) or vascular endothelial growth factor (VEGF) amongst other markers.
- P1GF placenta growth factor
- sFlt soluble fms- like tyrosine kinase- 1
- VEGF vascular endothelial growth factor
- the levels or velocities of SPINT1 and/or SYNDECAN-l may also be subject to analysis by but not limited to a multivariate or monovariate algorithm or other analytics function to establish a value which is compared to a control or statistically validated pre determined level.
- the present invention teaches that a reduction in level or velocity of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency in a pregnant female mammalian subject.
- the level of SPINT1 and/or SYNDECAN-l can be monitored throughout pregnancy and/or measured at pre-determined stages including at any time in the first, second or third trimester periods.
- the assay may be performed at any gestational time point or window throughout the gestational time period.
- biomarker The ability to detect placental insufficiency via a biomarker or combination of biomarkers increases sensitivity and specificity to a far greater level than physical measurements, ultrasound, examination and/or birthweights or predicted fetal weights. These are encompassed by the term“physiochemical parameters”.
- an assay to determine the state of placental health in a female mammalian subject comprising determining the circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and/or SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the term "indicative" means a sign or indication or factor to be considered, as opposed to being definitive proof in and of itself, and generally refers to an increased likelihood of the presence of a particular condition. For example, a reduction in the level or concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time generally correlates with an increased likelihood of placental insufficiency. Likewise, an elevation in the level or concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time generally correlates with an increased likelihood of placental sufficiency.
- the assay determines the state of placental health in a female mammalian subject, the method comprising determining the circulating levels of SPINT1 wherein a reduction in the concentration of SPINT1 relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a female mammalian subject, the method comprising determining the circulating levels of SYNDECAN-l wherein a reduction in the concentration of SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a female mammalian subject, the method comprising determining the circulating levels of SPINT1 and at least one other biomarker wherein a reduction in the concentration of SPINT1 and a change in at least one other biomarker relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and a change in at least one other biomarker is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a female mammalian subject, the method comprising determining the circulating levels of SYNDECAN-l and a change in at least one other biomarker wherein a reduction in the concentration of SYNDECAN-l and at least one other biomarker relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SYNDECAN-l and a change in at least one other biomarker is a measure of placental sufficiency or an improvement in placental sufficiency.
- an assay to determine the state of placental health in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and/or SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- an assay to detect abnormal fetal weight such as in macrosomia in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein an elevation in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of potential macrosomia.
- an assay to detect abnormal fetal weight in a female mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein an elevation in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of potential high fetal weight and a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of potential low fetal weight or small-for-gestational age or fetal growth restriction.
- the present invention extends to any mammalian subject such as a human, non human primate, a farm animal (e.g. a sheep, cow, horse, pig, alpaca, llama), a racing animal (e.g. a horse, camel or greyhound dog) or a domestic animal (e.g. dog or cat).
- a racing equine animal includes a quarter horse, thoroughbred, Arab and a warmblood horse.
- the present invention has application in human and veterinary clinical practice.
- the mammalian subject is a pregnant human female. In another embodiment, the mammalian subject is a pregnant mare. In yet another embodiment, the mammalian subject is a pregnant thoroughbred mare.
- the results of the assay may be used in combination with one or more risk factors associated with the subject to further assist in making a diagnosis.
- risk factors is meant to include any factor that statistically increases the risk of abnormal fetal weight.
- Risk factors related to abnormal fetal weight include but are not limited to maternal age, pregestational body mass index, education, smoking, alcohol consumption, in vitro fertilization, anemia in pregnancy, preeclampsia, diabetes, gestational age, pregnancy weight gain, gender of the newborn, history of fetal macrosomia, history of low fetal weight or small-for-gestational age or fetal growth restriction.
- an assay to determine the state of placental health in a pregnant human female subject comprising determining the circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l and/or SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a pregnant human female subject, the method comprising determining the circulating levels of SPINT1 wherein a reduction in the concentration of SPINT1 relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a pregnant human female subject, the method comprising determining the circulating levels of SYNDECAN-l wherein a reduction in the concentration of SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SYNDECAN-l is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a pregnant human subject, the method comprising determining the circulating levels of SPINT1 and at least one other biomarker wherein a reduction in the concentration of SPINT1 and a change in at least one other biomarker relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SPINT- 1 and a change in at least one other biomarker is a measure of placental sufficiency or an improvement in placental sufficiency.
- the assay determines the state of placental health in a pregnant human subject, the method comprising determining the circulating levels of SYNDECAN- 1 and at least one other biomarker wherein a reduction in the concentration of SYNDECAN- 1 and a change in at least one other biomarker relative to a control or over time or a change in ratio relative to a control or over time is indicative of placental insufficiency and an elevation in SYNDECAN-l and a change in at least one other biomarker is a measure of placental sufficiency or an improvement in placental sufficiency.
- a clinical management protocol for a pregnant human subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for macrosomia in a pregnant human subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein an elevation over time in SPINT1 and/or SYDNECAN-l compared to a control or a statistically validated level or a change in ratio reflecting elevation of levels of SPINT1 and/or SYNDECAN-l is indicative of macrosomia wherein the fetus is monitored and potentially subject to earlier delivery.
- subject includes a patient, pregnant mother and a female of child bearing age.
- the biomarkers are determined within maternal circulatory fluid which includes whole blood, plasma and serum. Other circulatory fluid such as lymph fluid, ascites or urine may also be assayed. The biomarker may be assayed alongside or in combination with physiochemical data obtained such as, by ultrasound.
- the assay may be performed in any number of ways including direct measure of the biomarker or indirectly using a ligand to the biomarker.
- a "ligand” includes an antibody and a receptor for the biomarker.
- the assay is an immunoassay such as an ELISA and uses antibodies to specifically bind to and directly or indirectly detect SPINT1 or SYNDECAN-l.
- the assay may be quantitated.
- the assay may also be genetic such as detecting RNAs encoding the biomarkers and/or other circulating RNA species (or non- RNA nucleic acid species) indicative of placental insufficiency or its associated conditions such as FGR.
- placental insufficiency includes the effects caused directly or indirectly by placental insufficiency such as FGR and SGA babies.
- the assay enables early detection of placental insufficiency.
- the present invention is not limited to just the early detection of placental insufficiency since the assay may be used at any gestational stage of a pregnancy.
- elevated levels of SPINT1 and/or SYNDECAN-l or their ratios indicating an elevation in either or both is proposed to be an indicator of fetal macrosomia.
- uterine blood flow uterine artery Doppler velocity
- circulating biomarkers useful in the detection of placental insufficiency or to assess the level of placental health.
- the biomarkers are SPINT1 (also known as hepatocyte growth factor activator inhibitor-l; HAI-l) and SYNDECAN-l.
- SPINT1 also known as hepatocyte growth factor activator inhibitor-l; HAI-l
- SYNDECAN-l includes a modified or homolog form thereof.
- a modified form includes a derivative, polymorphic variant, truncated form (truncate) and aggregated or multimeric forms or forms having expansion elements (e.g. amino acid expansion elements).
- expansion elements e.g. amino acid expansion elements
- SPINT1 comprises an amino acid sequence of SEQ ID NO: l (GenBank Accession No: AB000095.1), or an amino acid sequence having at least 70% sequence identity thereto:
- Reference to “at least 70% sequence identity” includes 70%, 71%, 72%, 73%, 74%,
- the amino acid sequence of SPINT1 comprises at least 85%, preferably at least 86%, preferably at least 87%, preferably at least 88%, preferably at least 89%, preferably at least 90%, preferably at least 91%, preferably at least 92%, preferably at least 93%, preferably at least 94%, preferably at least 95%, preferably at least 96%, preferably at least 97%, preferably at least 98%, preferably at least 99% or more preferably 100% sequence identity to SEQ ID NO:l, as described herein.
- the amino acid sequence of SYNDECAN-l comprises at least 85%, preferably at least 86%, preferably at least 87%, preferably at least 88%, preferably at least 89%, preferably at least 90%, preferably at least 91%, preferably at least 92%, preferably at least 93%, preferably at least 94%, preferably at least 95%, preferably at least 96%, preferably at least 97%, preferably at least 98%, preferably at least 99% or more preferably 100% sequence identity to SEQ ID NO:2, as described herein.
- identity means that at any particular amino acid residue position in an aligned sequence, the amino acid residue is identical between the aligned sequences.
- similarity indicates that, at any particular position in the aligned sequences, the amino acid residue is of a similar type between the sequences.
- leucine may be substituted for an isoleucine or valine residue. As noted elsewhere herein, this may be referred to as conservative substitution.
- modified or homolog forms of SPINT1 and SYNDECAN-l have an amino acid sequence that differs from SEQ ID NOs:l and 2, respectively, by way of one or more conservative substitution of any of the amino acid residues contained therein.
- sequence identity with respect to a peptide sequence relates to the percentage of amino acid residues in the candidate sequence which are identical with the residues of the corresponding peptide sequence after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percentage homology, and not considering any conservative substitutions as part of the sequence identity. Neither N- or C- terminal extensions, nor insertions shall be construed as reducing sequence identity or homology. Methods and computer programs for performing an alignment of two or more amino acid sequences and determining their sequence identity or homology are well known to persons skilled in the art.
- the percentage of identity or similarity of two amino acid sequences can be readily calculated using algorithms, for example, BLAST, FASTA, or the Smith- Waterman algorithm.
- Techniques for determining an amino acid sequence "similarity" are well known to persons skilled in the art.
- similarity means an exact amino acid to amino acid comparison of two or more peptide sequences or at the appropriate place, where amino acids are identical or possess similar chemical and/or physical properties such as charge or hydrophobicity. A so-termed “percent similarity” then can be determined between the compared peptide sequences.
- identity refers to an exact amino acid to amino acid correspondence of two peptide sequences. Two or more peptide sequences can also be compared by determining their "percent identity”.
- the percent identity of two sequences may be described as the number of exact matches between two aligned sequences divided by the length of the shorter sequence and multiplied by 100.
- An approximate alignment for nucleic acid sequences is provided by the local homology algorithm of Smith and Waterman, Advances in Applied Mathematics 2:482-489 (1981). This algorithm can be extended to use with peptide sequences using the scoring matrix developed by Dayhoff (Atlas of Protein Sequences and Structure, M. O. Dayhoff ed., 5 suppl. 3:353-358, National Biomedical Research Foundation, Washington, D.C., USA), and normalized by Gribskov ( Nucl . Acids Res. l4(6):6745-6763, 1986).
- Suitable programs for calculating the percent identity or similarity between sequences are generally known in the art.
- Optimal alignment of sequences for aligning a comparison window may be conducted by computerized implementations of algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package Release 7.0, Genetics Computer Group, 575 Science Drive Madison, WI, USA) or by inspection and the best alignment (i.e., resulting in the highest percentage homology over the comparison window) generated by any of the various methods selected.
- modified or homolog forms of SPINT1 and SYNDECAN-l include non-human isoforms.
- non-human isoforms include SPINT1 and SYNDECAN-l isoforms native to primates, companion animals such as cats and dogs and the like, working animals such as horses, donkeys and the like, livestock animals such as sheep, cows, goats, pigs and the like, laboratory test animals such as rabbits, mice, rats, guinea pigs, hamsters and the like and captive wild animals such as those in zoos and wildlife parks, deer, dingoes and the like.
- an assay for determining the state of placental sufficiency in a subject comprising determining the concentration of biomarkers in a circulating biological sample from the subject selected from SPINT1 and SYNDECAN-l, wherein an alteration in the levels of the biomarkers relative to a control provides an indication of the state of placental sufficiency.
- a reduction in SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency or a propensity to develop same.
- the present invention contemplates an assay for determining the state of placental sufficiency in a subject, the assay comprising determining the concentration of biomarkers in a circulating biological sample from the subject selected from SPINT1 and SYNDECAN-l; subjecting the levels to an algorithm or analytics function or process or other data processing means generated from a first knowledge base of data comprising the levels of the same biomarkers from a subject or cohort of subjects of known status with respect to placental sufficiency wherein the algorithm or analytics or data processing provides an index of probability of the subject having or not having placental insufficiency or placental sufficiency.
- Reference to the "algorithm” includes an algorithm which performs, but is not limited to, a multivariate or monovariate analysis function.
- the determination of the concentrations or levels of the biomarkers enables establishment of a diagnostic rule based on the concentrations relative to controls.
- the diagnostic rule is based on the application of a statistical and machine learning algorithm.
- Such an algorithm uses relationships between biomarkers and state of placental sufficiency observed in training data (with known placental sufficiency status) to infer relationships which are then used to predict the status of patients with unknown status.
- An algorithm may be employed which provides an index of probability that a patient has placental insufficiency. As indicated above, the algorithm may perform but is not limited to, a multivariate or monovariate analysis function. Alternatively, the data is subject to analytics or analytical functions or processing.
- the present invention provides a diagnostic rule based on the application of a statistical and machine learning algorithm.
- a statistical and machine learning algorithm uses the relationships between biomarkers and placental sufficiency or insufficiency status observed in training data (with known placental sufficiency status) to infer relationships which are then used to predict the status of patients with unknown placental sufficiency status.
- Practitioners skilled in the art of data analysis recognize that many different forms of inferring relationships in the training data may be used without materially changing the present invention.
- Other analytics may also be employed to analyse data and identify associations between biomarkers and/or physiochemical parameters and placental insufficiency or its associated conditions such as FGR.
- the present invention contemplates the use of a knowledge base of training data comprising levels of biomarkers selected from SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker from a subject with known placental sufficiency status to generate an algorithm or analytics function or process or other data processing means which, upon input of a second knowledge base of data comprising levels of the same biomarkers from a patient with an unknown placental sufficiency status, provides an index of probability that predicts the nature of the placenta.
- Other analytics functions may also be used.
- the "subject” is generally a human female. However, the present invention extends to veterinary applications.
- the term "training data” includes knowledge of levels of biomarkers relative to a control.
- a "control” includes a comparison to levels of biomarkers in a subject with adequate placental sufficiency or with known placental insufficiency or may be a statistically determined level based on trials.
- a statistically determined level may be a statistically validated predetermined level or cut-off that has already been validated as being linked or associated with placental sufficiency or with placental insufficiency.
- levels also encompasses ratios of levels of biomarkers and their velocities.
- the "training data” also include the concentration of one or more of SPINT1 and/or SYNDECAN-l. The data may comprise information on an increase or decrease in either or both biomarkers.
- the present invention further contemplates a panel of biomarkers for the detection of placental insufficiency or state of placental health or dysfunction in a subject, the panel comprising agents which bind specifically to biomarkers, the biomarkers selected from SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker to determine levels of the biomarkers and then optionally subjecting the levels to an algorithm or analytics function or process or other data processing means generated from a first knowledge base of data comprising the levels of the same biomarkers from a subject of known status with respect to the conditions wherein the algorithm provides an index of probability of the subject having or not having placental insufficiency.
- the biomarkers selected from SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker to determine levels of the biomarkers and
- the levels or concentrations of the biomarkers provide the input test data referred to herein as a "second knowledge base of data".
- the second knowledge base of data either is considered relative to a control or is fed into an algorithm generated by a "first knowledge base of data" which comprise information of the levels of biomarkers in a subject with a known placental sufficiency or insufficiency.
- the second knowledge base of data is from a subject of unknown status with respect to placental sufficiency or insufficiency.
- the output of the algorithm or analytics function or process or other data processing means is a probability or risk factor, referred to herein as an index of probability, of a subject having a particular level of placental sufficiency or insufficiency.
- the algorithm or analytics function or process or other data processing means may perform a multivariate or monovariate analysis function or other statistical operation.
- the agents which "specifically bind" to the biomarkers generally include an immunointeractive molecule such as an antibody or hybrid, derivative including a recombinant or modified form thereof or an antigen-binding fragment thereof.
- the agents may also be a receptor or other ligand.
- the antibodies or receptors may be specific for the biomarker from a particular species of mammal or may be raised from a different species if they cross react. All these agents assist in determining the level of the biomarkers. Information on the level is input data for the algorithm.
- the present invention further provides a panel of immobilized ligands to SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker.
- the ligands such as antibodies specific to the biomarkers, enable the quantitative or qualitative detection or determination of the level of the biomarkers.
- Reference to "level” includes concentration as weight per volume, activity per volume or units per volume or other convenient representative as well as ratios of levels and velocities.
- sample is generally circulatory maternal fluid such as whole blood, plasma or serum.
- sample is a tissue sample which is being histologically examined or is ascites, lymph fluid or urine.
- the "ligand” or “binding agent” and like terms refer to any compound, composition or molecule capable of specifically or substantially specifically (that is with limited cross -reactivity) binding to an epitope on SPINT1 or SYNDECAN-l .
- the "binding agent” generally has a single specificity. Notwithstanding, binding agents having multiple specificities for both SPINT1 and SYNDECAN-l are also contemplated herein.
- the binding agents are typically antibodies, such as monoclonal antibodies, or derivatives or analogs thereof, but also include, without limitation: Fv fragments; single chain Fv (scFv) fragments; Fab' fragments; F(ab')2 fragments; humanized antibodies and antibody fragments; camelized antibodies and antibody fragments; and multivalent versions of the foregoing.
- Multivalent binding reagents also may be used, as appropriate, including without limitation: monospecific or bispecific antibodies; such as disulfide stabilized Fv fragments, scFv tandems [(scFv) 2 fragments], diabodies, tribodies or tetrabodies, which typically are covalently linked or otherwise stabilized (i.e. leucine zipper or helix stabilized) scFv fragments.
- Binding agents also include aptamers, as are described in the art.
- Antigen-specific binding agents including antibodies and their derivatives and analogs and aptamers
- Polyclonal antibodies can be generated by immunization of an animal.
- Monoclonal antibodies can be prepared according to standard (hybridoma) methodology.
- Antibody derivatives and analogs, including humanized antibodies can be prepared recombinantly by isolating a DNA fragment from DNA encoding a monoclonal antibody and subcloning the appropriate V regions into an appropriate expression vector according to standard methods. Phage display and aptamer technology is described in the literature and permit in vitro clonal amplification of antigen-specific binding reagents with very affinity low cross-reactivity.
- Phage display reagents and systems are available commercially, and include the Recombinant Phage Antibody System (RPAS), commercially available from Amersham Pharmacia Biotech, Inc. of Piscataway, New Jersey and the pSKAN Phagemid Display System, commercially available from MoBiTec, LLC of Marco Island, Florida. Aptamer technology is described for example and without limitation in US Patent Nos. 5,270,163; 5,475,096; 5,840,867 and 6,544,776.
- RPAS Recombinant Phage Antibody System
- ECLIA, ELISA and Luminex LabMAP immunoassays are examples of suitable assays to detect levels of the biomarkers.
- a first binding reagent/antibody is attached to a surface and a second binding reagent/antibody comprising a detectable group binds to the first antibody.
- detectable-groups include, for example and without limitation: fluorochromes, enzymes, epitopes for binding a second binding reagent (for example, when the second binding reagent/antibody is a mouse antibody, which is detected by a fluorescently-labeled anti-mouse antibody), for example an antigen or a member of a binding pair, such as biotin.
- the surface may be a planar surface, such as in the case of a typical grid-type array (for example, but without limitation, 96-well plates and planar microarrays) or a non-planar surface, as with coated bead array technologies, where each "species" of bead is labeled with, for example, a fluorochrome (such as the Luminex technology described in U. S. Patent Nos. 6,599, 331,6, 592,822 and 6,268, 222), or quantum dot technology (for example, as described in U. S. Patent No. 6,306. 610).
- fluorochrome such as the Luminex technology described in U. S. Patent Nos. 6,599, 331,6, 592,822 and 6,268, 222
- quantum dot technology for example, as described in U. S. Patent No. 6,306. 610.
- Such assays may also be regarded as laboratory information management systems (LIMS).
- LIMS laboratory information management systems
- the Luminex LabMAP system can be utilized.
- the LabMAP system incorporates polystyrene microspheres that are dyed internally with two spectrally distinct fluorochromes. Using precise ratios of these fluorochromes, an array is created consisting of 100 different microsphere sets with specific spectral addresses. Each microsphere set can possess a different reactant on its surface. Because microsphere sets can be distinguished by their spectral addresses, they can be combined, allowing up to 100 different analytes to be measured simultaneously in a single reaction vessel. A third fluorochrome coupled to a reporter molecule quantifies the biomolecular interaction that has occurred at the microsphere surface.
- Microspheres are interrogated individually in a rapidly flowing fluid stream as they pass by two separate lasers in the Luminex analyzer.
- High speed digital signal processing classifies the microsphere based on its spectral address and quantifies the reaction on the surface in a few seconds per sample.
- immunoassay refers to immune assays, typically, but not exclusively sandwich assays, capable of detecting and quantifying a desired biomarker, namely SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker.
- Data generated from an assay to determine circulatory fluid levels of SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker, can be used to determine the likelihood of or progression of the state of placental insufficiency in the subject.
- the input of data comprising the levels of the biomarkers is compared with a control or is put into the algorithm which provides a risk value of the likelihood that the subject has or will develop placental insufficiency.
- circulatory fluid includes any blood fraction, for example serum or plasma, which can be analyzed according to the methods described herein. By measuring blood levels of a particular biomarker, it is meant that any appropriate blood fraction can be tested to determine blood levels and that data can be reported as a value present in that fraction.
- Other fluids contemplated herein include ascites, lymph fluid and urine.
- the present invention further encompasses a composition
- a composition comprising a sample obtained from a pregnant mammalian subject and an antibody that binds specifically to SPINT1 or SYNDECAN-l.
- the composition comprises an antibody that binds specifically to SPINT1 and an antibody that binds specifically to SYNDECAN-l.
- the sample is suitably a circulatory maternal fluid such as whole blood, plasma or serum.
- the sample is a tissue sample which is being histologically examined or is ascites, lymph fluid or urine.
- the antibody or antibodies are suitably labeled with a detectable group or substance.
- methods for diagnosing a state of placental health or dysfunction by determining levels of a specific biomarker and using this level as second knowledge base data in an algorithm generated with first knowledge base data or levels of the same biomarkers in patents with a known placental health.
- methods of detecting placental dysfunction comprising determining the presence and/or velocity of specific identified biomarkers in a subject's sample.
- velocity it is meant the change in the concentration of the biomarker in a patient's sample (the maternal circulatory fluid) over time.
- the subject invention contemplates a method for monitoring the progression of a pregnancy in a patient, comprising:
- step (c) repeating steps (a) and (b) at a later point in time and comparing the result of step (b) with the result of step (c) wherein a difference in the index of probability is indicative of the progression of the placental health.
- an increased index of probability of placental dysfunction developing at the later time point may indicate that the condition is progressing and that the treatment (if applicable) is not being effective.
- a decreased index of probability at the later time point may indicate that placental sufficiency is improving and that the treatment (if application) is effective.
- the treatment may include early or earlier delivery of the baby.
- the terms “early delivery” and “earlier delivery” are used interchangeably herein to refer to delivery of a fetus before a pregnant subject undergoes natural labor and includes a delivery assistance intervention such as induction of labor.
- the earlier or earlier delivery may be pre-term (e.g., before 37 weeks of gestation), term (e.g., 37, 38, 39, 40, 41 or 42 weeks of gestation) or post-term (e.g., after 42 weeks of gestation) and includes vaginal, instrumental (forceps or vacuum birth), or Caesarean delivery.
- the terms“early delivery” and“earlier delivery” refer to a delivery assistance intervention (e.g., induction of labor) at 38, 38.5 or 39 weeks of gestation.
- antibodies may be used in any of a number of immunoassays which rely on the binding interaction between an antigenic determinant of the biomarker and the antibodies.
- assays are radioimmunoassay, enzyme immunoassays (e.g. ECLIA, ELISA), immunofluorescence, immunoprecipitation, latex agglutination, hemagglutination and histochemical tests.
- the antibodies may be used to detect and quantify the level of the biomarker in a sample in order to determine the level of placental sufficiency or insufficiency.
- the antibody or circulatory fluid sample may be immobilized on a carrier or solid support which is capable of immobilizing cells, antibodies etc.
- the carrier or support may be nitrocellulose, or glass, polyacrylamides, gabbros, and magnetite.
- the support material may have any possible configuration including spherical (e.g. bead), cylindrical (e.g. inside surface of a test tube or well, or the external surface of a rod), or flat (e.g. sheet, test strip)
- Indirect methods may also be employed in which the primary antigen- antibody reaction is amplified by the introduction of a second antibody, having specificity for the antibody reactive against biomarker protein.
- the antibody having specificity against biomarker protein is a rabbit IgG antibody
- the second antibody may be goat anti-rabbit gamma-globulin labeled with a detectable substance as described herein.
- the biomarker may be localized by radioautography.
- the results of radioautography may be quantitated by determining the density of particles in the radioautographs by various optical methods, or by counting the grains.
- the methods of the present invention described herein may also be performed using microarrays, such as oligonucleotide arrays, mRNA arrays, cDNA arrays, genomic DNA arrays, or tissue arrays. Any nucleic acid species present in maternal circulatory fluid and which is associated directly or indirectly with placental insufficiency or its associated conditions such as FGR or SGA babies may be assayed.
- the method of the present invention involves the detection of expression of nucleic acid molecules encoding SPINT1, SYNDECAN-l, both SPINT1 and SYNDECAN-l; or one of SPINT1 or SYNDECAN-l and at least one other biomarker and to determine the level of biomarkers based on level of expression.
- another nucleic acid species e.g. RNA species other than mRNA
- RNA species other than mRNA may be assayed which is associated directly or indirectly with placental insufficiency or its associated conditions such as FGR or SGA babies.
- nucleotide probes for use in the detection of mRNA sequences encoding the biomarker or other RNA species in samples.
- Suitable probes include nucleic acid molecules based on nucleic acid sequences encoding at least five sequential amino acids from regions of the biomarker, preferably they comprise 15 to 30 nucleotides.
- a nucleotide probe may be labeled with a detectable substance such as a radioactive label which provides for an adequate signal and has sufficient half-life such as 32 P, 3 H, ⁇ C or the like.
- detectable substances which may be used include antigens that are recognized by a specific labeled antibody, fluorescent compounds, enzymes, antibodies specific for a labeled antigen, and luminescent compounds.
- An appropriate label may be selected having regard to the rate of hybridization and binding of the probe to the nucleotide to be detected and the amount of nucleotide available for hybridization.
- Labeled probes may be hybridized to nucleic acids on solid supports such as nitrocellulose filters or nylon membranes as generally described in Sambrook et al, Molecular Cloning, A Laboratory Manual. ( 2nd ed.), 1989.
- the nucleic acid probes may be used to detect genes, for example, in human cells, that encode the biomarker.
- the nucleotide probes may also be useful in the diagnosis of placental disorders involving SPINT1 and/or SYNDECAN-l, in monitoring the progression of such disorders, or in monitoring a therapeutic treatment. In an embodiment, the probes are used in the diagnosis of, and in monitoring the progression of placental sufficiency or insufficiency.
- the probe may be used in hybridization techniques to detect expression of genes that encode biomarker proteins.
- the technique generally involves contacting and incubating nucleic acids (e.g. mRNA or other RNA species) obtained from a sample from a patient or other cellular source with a probe under conditions favorable for the specific annealing of the probes to complementary sequences in the nucleic acids. After incubation, the non- annealed nucleic acids are removed, and the presence of nucleic acids that have hybridized to the probe if any are detected.
- nucleic acids e.g. mRNA or other RNA species
- the detection of mRNA may involve converting the mRNA to cDNA and/or the amplification of specific nucleotide sequences using an amplification method such as polymerase chain reaction (PCR), followed by the analysis of the amplified molecules using techniques known to those skilled in the art. Suitable primers can be routinely designed by one of skill in the art.
- PCR polymerase chain reaction
- Hybridization and amplification techniques described herein may be used to assay qualitative and quantitative aspects of expression of genes encoding the biomarker.
- RNA may be isolated from a cell type or tissue known to express a gene encoding the biomarker or otherwise associated with placental insufficiency, and tested utilizing the hybridization (e.g. standard Northern analyses) or PCR techniques referred to herein.
- the techniques may be used to detect differences in transcript size which may be due to normal or abnormal alternative splicing.
- the techniques may be used to detect quantitative differences between levels of full length and/or alternatively splice transcripts detected in normal individuals relative to those individuals exhibiting symptoms of placental insufficiency involving a biomarker protein or gene.
- the present invention provides a method of detecting the state of placental health in a subject comprising:
- kits comprising the necessary reagents to perform any of the methods of the invention.
- the kits may include at least one specific nucleic acid or antibody described herein, which may be conveniently used, e.g. in clinical settings, to screen and diagnose patients and to screen and identify those individuals exhibiting a predisposition to developing placental dysfunction.
- the kits may also include nucleic acid primers for amplifying nucleic, acids encoding the biomarker in the polymerase chain reaction.
- the kits can also include nucleotides, enzymes and buffers useful in the method of the invention as well as electrophoretic markers such as a 200 bp ladder.
- the kit also includes detailed instructions for carrying out the methods of the present invention.
- the present invention further provides an algorithm-based screening assay to screen circulatory fluid samples from patients.
- input data are collected based on levels of a biomarker (or levels of expression of genes encoding a biomarker) and subjected to an algorithm to assess the statistical significance of any elevation or reduction in levels which information is then output data.
- Computer software and hardware for assessing input data are encompassed by the present invention.
- the assay of the present invention permits integration into existing or newly developed pathology architecture or platform systems.
- the present invention contemplates a method of allowing a user to determine the status of a subject with respect to a level of placental sufficiency or insufficiency, the method including:
- the method generally further includes:
- the base station can include first and second processing systems, in which case the method can include:
- the method may also include:
- the method also includes at least one of:
- the second processing system may be coupled to a database adapted to store predetermined data and/or the algorithm, the method may include:
- references to an "algorithm” or “algorithmic functions” as outlined above includes the performance of, but not limited to, a multivariate or monovariate analysis function. Other analytic functions may also or alternatively be performed. A range of different architectures and platforms may be implemented in addition to those described above. It will be appreciated that any form of architecture suitable for implementing the present invention may be used. One technique is the use of distributed architectures. This can increase the efficiency of the system by reducing data bandwidth costs and requirements, as well as ensuring that if one base station becomes congested or a fault occurs, other end stations could take over. This also allows load sharing or the like to ensure access to the system is available at all times.
- the term “data” means the levels or concentrations or velocities of a biomarker. This may be assayed alone or in combination with physical, chemical or physiochemical parameters such as data obtained from ultrasound or other physical testing procedures.
- the "communications network” includes the internet. When a server is used, it is generally a client server or more particularly a simple object application protocol (SOAP).
- SOAP simple object application protocol
- the present assay can be incorporated into present diagnostic architecture as an additional test during pregnancy or a stand-alone test.
- the assay may be associated with ultrasound or physical measurements.
- the data can be used in a clinical management protocol for a pregnancy. This may include a decision to deliver a baby earlier than otherwise planned.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 wherein a reduction over time in SPINT1 compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINTlis indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SYNDECAN-l wherein a reduction over time in SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and at least one other biomarker wherein a reduction over time in SPINT1 and change in at least one other biomarker compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and at least one other biomarker is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SYNDECAN-l and at least one other biomarker wherein a reduction over time in SYNDECAN-l and change in at least one other biomarker compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SYNDECAN-l and at least one other biomarker is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for macrosomia in a pregnant mammalian subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein an elevation over time in SPINT1 and/or SYDNECAN-l compared to a control or a statistically validated level or a change in ratio reflecting elevating placental insufficiency and macrosomia wherein the fetus is monitored or subject to earlier delivery.
- the mammalian subject is a pregnant human female subject.
- the sample tested is circulatory maternal fluid.
- a clinical management protocol for a pregnant human female subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human female subject comprising determining the levels of circulating SPINT1 wherein a reduction over time in SPINT1 compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINTlis indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human female subject comprising determining the levels of circulating SYNDECAN-l wherein a reduction over time in SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human female subject comprising determining the levels of circulating SPINT1 and at least one other biomarker wherein a reduction over time in SPINT1 and at least one other biomarker compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and at least one other biomarker is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein a reduction over time in SPINT1 and/or SYNDECAN-l compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SPINT1 and/or SYNDECAN-l is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for macrosomia in a pregnant human subject comprising determining the levels of circulating SPINT1 and/or SYNDECAN-l wherein an elevation over time in SPINT1 and/or SYDNECAN-l compared to a control or a statistically validated level or a change in ratio reflecting elevating placental insufficiency and macrosomia wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human female subject comprising determining the levels of circulating SYNDECAN-l and at least one other biomarker wherein a reduction over time in SYNDECAN-l and at least one other biomarker compared to a control or a statistically validated level or a change in ratio reflecting a lowering of levels of SYNDECAN-l and at least one other biomarker is indicative of placental insufficiency and wherein the fetus is monitored or subject to earlier delivery.
- the present invention encompasses an assay for determining the state of fetal macrosomia in a subject, the assay comprising determining the concentration of biomarkers in a circulating biological sample from the subject selected from SPINT1 and SYNDECAN-l; subjecting the levels to an algorithm or analytics function or process or other data processing means generated from a first knowledge base of data comprising the levels of the same biomarkers from a subject or cohort of subjects of known status with respect to fetal macrosomia wherein the algorithm or analytics or data processing provides an index of probability of the subject having or not having a baby with fetal macrosomia.
- the levels of SPINT1 and/or SYNDECAN-l are indicators of fetal health whether due to the level of placental sufficiency or insufficiency or as markers of fetal macrosomia.
- a circulating SPINT1 MoM (measured from about 35-37 weeks gestation) of ⁇ 0.63 represents a high risk (tier 1); of 0.63 to 1.1 represents a normal risk (tier 2); of 1.1 to 1.6 represents lower risk (tier 3); and of >1.6 represents a lowest risk (tier 4) of delivery of a neonate with low birthweight.
- the highest tier (tier 1) was associated with a 14.1%, 19.7%, 28.2% and 46.5% risk of women delivering neonates with birthweights ⁇ 3 rd , ⁇ 5 ⁇ , ⁇ 10 ⁇ and ⁇ 20 ⁇ centiles, respectively.
- the lowest tier (tier 4) was associated with 0.0 to 6.6% risk of birthing neonates at these fetal weight centiles.
- the pregnant female subject is determined to be at high risk of delivery of a low birthweight neonate if the subject has a circulating level SPINT1 of less than about 0.63 (MoM).
- the pregnant female subject is determined to be at low risk of delivery of a low birthweight neonate if the subject has a circulating level SPINT1 of greater than about 1.1 (MoM).
- a clinical management protocol for a pregnant female subject comprising determining the levels of circulating SPENT 1 wherein a circulating SPENT 1 concentration of less than about 0.63 MoM at from about 35 to about 37 weeks’ gestation is indicative of an elevated risk of delivering a low birthweight infant and wherein the fetus is monitored or subject to earlier delivery.
- a clinical management protocol for a pregnant human subject comprising determining the levels of circulating SPINT1 wherein a circulating SPINT1 concentration of less than about 0.63 MoMs at about 36 weeks’ gestation is indicative of an elevated risk of delivering a low birthweight infant and wherein the fetus is monitored or subject to earlier delivery.
- levels of SPINT1 and SYNDECAN-l are already significantly lower at about 27 to 29 weeks gestation in women who subsequently delivered an SGA baby, as compared to women who do not subsequently delivered an SGA baby.
- the assays, methods and protocols disclosed herein may be performed using levels of SPINT1 and /or SYNDECAN-l measure in a sample obtained from the pregnant mammalian subject at about 27 to about 36 weeks gestation.
- about 27 to about 36 weeks includes about 27 weeks, preferably about 28 weeks, preferably about 29 weeks, preferably about 30 weeks, preferably about 31 weeks, preferably about 32 weeks, preferably about 33 weeks, preferably about 34 weeks, preferably about 35 weeks, or about 36 weeks gestation.
- a clinical management protocol for a pregnant mammalian subject comprises determining the levels of circulating SPINT1 in a sample obtained from the subject at a time point from about 27 weeks to about 36 weeks gestation, preferably from about 27 weeks to about 29 weeks gestation, or more preferably from about 28 weeks gestation.
- the protocol further comprises monitoring or subjecting the fetus of the subject identified as having placental insufficiency, and/or at risk of low birthweight, to earlier delivery.
- the subject is monitored using the assays, methods or protocols of the present invention to determine the presence or absence of placental insufficiency or its associated conditions such as FGR or SGA, or macrosomia, to provide an indicator as to whether an earlier delivery of the fetus may be required.
- the monitoring is often conducted by serial testing.
- the pregnant subject is monitored as needed (e.g., on an as-needed basis) using the methods described herein.
- the pregnant subject can be monitored weekly, monthly, or at any pre-specified intervals.
- the pregnant subject is monitored at least once every 24 hours.
- the pregnant subject is monitored at least once every 1 day to 30 days.
- the pregnant subject is monitored at least once every at least 1 day. In some instances the pregnant subject is monitored at least once every at most 30 days. In some instances the pregnant subject is monitored at least (optionally on average) once every 1 day to 5 days, 1 day to 10 days, 1 day to 15 days, 1 day to 20 days, 1 day to 25 days, 1 day to 30 days, 5 days to 10 days, 5 days to 15 days, 5 days to 20 days, 5 days to 25 days, 5 days to 30 days, 10 days to 15 days, 10 days to 20 days, 10 days to 25 days, 10 days to 30 days, 15 days to 20 days, 15 days to 25 days, 15 days to 30 days, 20 days to 25 days, 20 days to 30 days, or 25 days to 30 days.
- the pregnant subject is monitored at least once every 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 28, 29, 30 or 31 days. In some instances, the pregnant subject is monitored at least once every 1, 2, or 3 months. In some instances, the pregnant subject is monitored via the methods described herein no more frequently than one week, 10 days, two weeks, three weeks, or one month. In other words, the predictive value of the some of the methods described herein can be of clinical use for at least one week, at least 10 days, at least two week, at least three weeks, or at least one month.
- a pregnant subject is monitored periodically (as described for example above) using the assays, methods or protocols of the present invention from about 35-37 weeks gestation, and the fetus is subjected to early delivery between about 38 weeks of gestation and about 39 weeks of gestation, on the basis that the results of the assays, methods or protocols indicate placental insufficiency or fetal growth restriction or macrosomia. It is believed that such an intervention could decrease the likelihood of stillbirths (the risk of stillbirth increases significantly post 38 weeks gestation), fetal or maternal injury in pregnancies where there is suspected macrosomia (where the pregnancy is not induced at term gestation and left to continue until spontaneous labour occurs (Boulvain et al.
- the present inventors have surprisingly found that the circulating level of SPINT1 and/or SYNDECAN-l in pregnant female subjects is indicative of the risk of low birthw eight, noting that pregnant female subjects with a low level of SPINT1 and/or SYNDECAN-l from as early as about 27-29 weeks gestation are at significant risk of giving birth to a low birthweight (small for gestational age) neonate.
- a birthweight calculator that is, to an apparatus or method of predicting the birthweight of a neonate by correlating the circulating level of SPINT1 and/or SYNDECAN-l in a pregnant female subject to predetermined circulating levels of SPINT1 and/or SYNDECAN-l of a female subject for which the birthweight of the neonate is known.
- the present disclosure extends to a method of predicting the birthweight of a neonate, the method comprising (i) determining a circulating level of SPINT1 and/or SYNDECAN-l in a sample from a pregnant female subject; (ii) providing a predetermined correlation between circulating levels of SPINT1 and/or SYNDECAN-l of a plurality of pregnant female subjects of the same species and neonatal birthweight; and (iii) predicting the birthweight of the neonate from the circulating level of SPINT1 and/or SYNDECAN-l as determined in step (i) based on the predetermined correlation of step (ii).
- the present disclosure also extends to an apparatus for predicting the birthweight of a neonate, the apparatus comprising (i) a receiver operative to receive biomarker information, wherein said biomarker information is a circulating level of SPINT1 and/or SYNDECAN-l in a sample from a pregnant female subject; and (ii) a birthweight determiner operative to employ said biomarker information to provide an output that represents a prediction of the birthweight of the neonate; wherein said predicted birthweight is based on a predetermined correlation between circulating levels of SPINT1 and/or SYNDECAN-l of a plurality of pregnant female subjects of the same species and neonatal birthweight.
- the predetermined correlation between (a) circulating levels of SPINT1 and/or SYNDECAN-l of a plurality of pregnant female subjects of the same species and (b) neonatal birthweight is defined by a regression coefficient (R 2 ) of from about 0.020 and 0.060. In an embodiment, the predetermined correlation is defined by a regression coefficient of from about 0.026 to about 0.52. In an embodiment, the predetermined correlation is defined by a regression coefficient of about 0.52
- the present disclosure extends to an assay to determine the placental weight and / or the placental surface area in a pregnant female mammalian subject, the method comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of lower placental weight and lower placental surface area.
- a clinical management protocol for a pregnant mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of lower placental weight and lower placental surface area and wherein the fetus is monitored or subject to earlier delivery.
- the present disclosure also extends to an assay to determine the lean mass of a neonate, the method comprising determining the circulating levels of SPINT1 and/or SYNDECAN-l in a pregnant female mammalian subject, wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of the neonate having a lower lean mass.
- a clinical management protocol for a pregnant mammalian subject comprising determining the maternal circulating levels of SPINT1 and/or SYNDECAN-l wherein a reduction in the concentration of SPINT1 and/or SYNDECAN-l relative to a control or over time or a change in ratio relative to a control or over time is indicative of the neonate having a lower lean mass and wherein the fetus is monitored or subject to earlier delivery and / or the subject is exposed to a treatment to enhance the lean mass of the neonate.
- FLAG Fetal Longitudinal Assessment of Growth
- SPINT1 is a protease inhibitor that regulates cell surface and extracellular serine proteases involved in tissue remodelling (Tanaka et al. (2005) Mol Cell Biol 25: 5687-5698). SPINT1 was originally identified as an inhibitor of hepatocyte growth factor activator. It is also known as HAI-l. Its importance in placental development is highlighted by the fact that SPINT1 knockout mice have severe growth restriction and embryonic lethality, due to failed placental development and function (Tanaka et al. (2005) supra). SPINT1 knockout mice have impaired formation of the labyrinth layer - a layer critically important in maternal/fetal exchange.
- SPINT1 and SYNDECAN-l are new markers of placental insufficiency.
- SPINT1 performs better than Placental Growth Factor (P1GF) as a marker of FGR.
- P1GF Placental Growth Factor
- Figures 1A through P are graphical representations showing circulating SPINT1 and SYNDECAN-l measured in plasma using commercially available ELISAs.
- SPINT1 from Sigma Aldrich and SYNDECAN-l from Thermo Fisher Scientific.
- sFLT-l and P1GF were measured using diagnostic test assays from Roche.
- a case control cohort was selected from patients who provided a blood sample at 36 weeks gestation.
- FIGS. 3 A through P are graphical representations showing observational studies to determine whether placental SPINT1 is altered in cases of human SGA. To do this, a cohort of placentas was selected from either control, preeclamptic or SGA pregnancies. SPINT1 mRNA was measured using quantitative RT-PCR and showed that in patients who delivered their baby at ⁇ 34 weeks gestation SPINT1 mRNA was significantly reduced in both the preeclampsia and SGA cohort, compared to controls. No change in SPINT1 mRNA expression was detected in placentas collected from patients who delivered at >34 weeks gestation.
- SPINT1 protein expression was assessed using Western blot and commercially available antibodies. In samples collected at both ⁇ 34 weeks gestation and >34 weeks gestation, SPINT1 protein was significantly reduced in the placentas from women delivering a SGA baby. Data expressed as mean +/- SEM - each symbol represents an individual patient or mouse *r ⁇ 0.05,**r ⁇ 0.01, ***p ⁇ 0.00l ****p ⁇ 0.000l.
- hypoxia a parameter indicative of placental insufficiency.
- Primary human trophoblast ie placental cells isolated from placentas that were freshly delivered was exposed to either 1% (hypoxia) or 8% (normoxia) oxygen (0 2 ).
- the next step was to assess whether exposure of primary placental cells (cytotrophoblast cells isolated from term human placentas) to low oxygen conditions (1% v/v oxygen for hypoxia vs 8% v/v oxygen for normoxia) would alter SPINT1 mRNA and protein expression and protein secretion.
- mRNA expression was initially assessed by qRT- PCR and we found exposure of primary placental cells to hypoxia resulted in significantly reduced SPINT1 mRNA expression (3E), with a similar finding observed for cellular protein measured by Western blot (3F).
- SPINT1 was assessed in a mouse model of FGR induced by maternal hypoxia.
- pregnant mice are exposed to hypoxia (10% inspired 0 2 ) or normoxia (21% inspired 0 2 ) [Higgins et al. (2016) The Journal of physiology 594: 1341-1356] from El4-l9 before being culled on E19.5 (note, term in mice is approximately day 20).
- Exposure of pregnant dams to hypoxia significantly compromises labyrinth zone formation (equivalent to the placental interface in human placenta), reducing the surface area and density of fetal capillaries and compromising substrate exchange and blood flow to the growing feto placental unit.
- placentas in which SPINT1 mRNA was measured had hypoxia-induced growth restricted fetuses but there was no change in placental weight (3H,I). It was subsequently shown that indeed placental SPINT1 mRNA expression was significantly reduced in the placentas of mice that were exposed to hypoxia (3J). Placental SPINT1 protein expression was then measured. Again we confirmed this hypoxia reduced fetal weight but not placental weight (3K,L). In this set of animal studies we confirmed that placental SPINT1 protein was also significantly reduced under hypoxia (3M). Thus, strong evidence is obtained to indicate that SPINT1 is reduced in the placentas of SGA babies and that the reduction in SPINT1 may be associated with placental hypoxia.
- SRI31215 Glixx laboratories
- SPINT1 is critical to normal placental function
- the aims of this Example are: to characterize the expression of matriptase in FGR placentas and assess the effect of reduced placental SPINT1 on matriptase activity in isolated trophoblast cells; to assess the effect of reduced placental SPINT1 on normal human placental cell function, including syncytialization, invasion and proliferation; and to characterize the precise timing of SPINT1 dependency for normal placental development using a conditional placental SPINT1 knockout mouse model.
- mRNA, protein expression and localization of matriptase in FGR placentas are characterized.
- the effect of silencing SPINT1 is assessed on matriptase activity in human placental cells.
- SPINT1 is silenced in isolated primary trophoblast using siRNA, and matriptase activity measured using commercially available assays to determine if activity is increased as seen in mouse placentas. Both term trophoblast and first trimester trophoblast are assessed.
- a second model of reduced SPINT1 is induced by placental hypoxia.
- SPINT1 knockdown using siRNA
- HTR8 and first trimester trophoblast migration, invasion and proliferation using xCELLigence The effect of SPINT1 knockdown (using siRNA) on HTR8 and first trimester trophoblast migration, invasion and proliferation using xCELLigence.
- Syncytialization is initially assessed in isolated term trophoblast. These cells spontaneously syncytialize in culture (Kaitu'u-Lino et al. (2014) supra).
- SPINT1 is silenced using siRNA and measure the effect on syncytialization over time by measuring markers of this process including human chorionic gonadotrophin (via ELISA) and loss of E-cadherin (PCR, Western blot and immunofluorescence). Also determined is whether reduced placental SPINT1 increases apoptosis (Caspases 3 and 9, BCL2 and Bax expression, via Western blot).
- a fluorescently tagged doxycycline-responsive transactivator protein that has high sensitivity to doxycycline (Fan et al. (2012) supra; Moutier et al. (2003) Transgenic research 12: 369-373) is used.
- the labyrinth zone develops from approximately E8.5-9, when the villi begin to extend and branch (Anson- Cartwright et al. (2000) Nat Genet 25: 311-314).
- Given the lack of labyrinth zone in SPINT1 knockout mice (Tanaka et al.
- Pregnant dams are culled 4 days after introduction of doxycycline or vehicle control to assess: 1) placental and circulating SPINT1 mRNA (PCR) and protein expression (Western blot) to confirm knockdown; 2) fluorescent localisation to confirm trophoblast transfection; 3) placental size and morphology; and 4) litter size, fetal growth (including fetal weight, crown-mmp length, limb, and liver and brain weight to assess symmetry of growth restriction and brain sparing effect). Placental parameters are measured, including markers of labyrinth development (e- cadherin and b-catenin) and assess trophoblast density, maternal blood spaces and fetal blood vessels.
- SPINT1 as a potential diagnostic marker for placental insufficiency
- SPINT1 is a new marker of FGR. Improving the detection of FGR in all stages of pregnancy is the crucial first step to improving perinatal outcomes, yet reliable screening strategies are currently lacking. As outlined earlier, SPINT1 holds great potential as a clinically useful diagnostic biomarker, being significantly reduced as early as 12 weeks preceding delivery of a SGA infant at term in the FLAG cohort. Although P1GF is one of the most widely studied markers of placental insufficiency, data from FLAG suggest it does not perform as well as SPINT1.
- Figures 5A through E are a graphical representations showing observational studies to determine whether placental SYNDECAN-l is altered in cases of human SGA.
- a cohort of placentas was selected from either control, preeclamptic (PE) or SGA pregnancies (same cohort used to measure SPINT1).
- PE preeclamptic
- SGA pregnancies standard cohort used to measure SPINT1.
- SYNDECAN-l mRNA was measured using quantitative RT-PCR and showed that in patients who delivered their baby at ⁇ 34 weeks gestation placental SYNDECAN-l mRNA was significantly increased in both the PE and SGA cohort compared to controls. Protein expression was subsequently measured.
- the commercial antibody used for Western blot produced 3 different bands, possibly corresponding to different isoforms of SYNDECAN-l.
- Figures 6 A through F are diagrammatic representations demonstrating the effect of placental hypoxia on syndecan mRNA and protein expression using the same samples assayed for SPINT1 in Figure 3.
- qRT- PCR indicated that hypoxia induced a significant reduction in SYNDECAN1 mRNA expression (A).
- Western blot demonstrated no significant change in total protein expression (B)
- SPINT1 is a diagnostic marker for placental insufficiency
- the cohort was divided approximately in half to discover, and then subsequently validate, biomarkers, including SPNT1. Samples from the first 997 consecutively recruited participants constituted cohort 1 (Table 2) and those from the second 999 consecutively recmited participants constituted cohort 2 (Table 3).
- Table 2 Maternal characteristics and pregnancy outcomes for Cohort 1. Data presented as mean (standard deviation) if normally distributed data, as median [25 th - 75 th percentile] if not normally distributed data, and as number (%) if categorical. Small-for-gestational age defined as birthweight ⁇ l0th centile:
- Table 3 Maternal characteristics and pregnancy outcomes for Cohort 2. Data presented as mean (standard deviation) if normally distributed data, as median [25 th - 75 th percentile] if not normally distributed data, and as number (%) if categorical. Small-for-gestational age defined as birthweight ⁇ l0th centile:
- FLAG B Some nulliparous participants were also involved in the ultrasound-based arm of the FLAG study, referred to herein as FLAG B.
- FLAG B 347 women underwent a 36 (35 +0 -37 +0 ) week ultrasound assessment where transabdominal colour and pulsed- wave Doppler were used to measure the mean maternal uterine artery pulsatility index (PI) and the umbilical artery PI. Measurements were taken during periods of fetal apnoea and inactivity with the angle of insonation close to zero. The umbilical artery PI was measured in a free loop of umbilical cord away from cord insertion sites.
- PI mean maternal uterine artery pulsatility index
- the probe was placed in each of the iliac fossae, and the waveform recorded within lcm of the uterine artery crossing the external iliac artery2.
- PI values were measured in triplicate and the mean calculated. Average uterine artery PI values were obtained for both the right and left vessels, and these averaged to provide the overall mean PI.
- the gestation- dependent centile (if normally distributed), or the multiples of the median (MoM) were determined. Treating clinicians were blinded to the uterine artery PI results.
- SYNDECAN-1 and SPINT1 are validated as diagnostic markers of placental
- the data presented in this study illustrate the association between SPINT1 or SYNDECAN-l and various clinical parameters of placental insufficiency in a larger cohort of samples.
- the data include some of the data described above, expanded to include whole cohorts of up to 2040 women.
- a 4-tier model of risk for different low birthw eight ranges was developed (cohort 2), then validated (cohort 1), based on different SPINT1 MoM cut offs levels. These cut-off levels were arbitrarily chosen when developing the test in cohort 2. The investigators prospectively agreed to setting these thresholds, which were subsequently applied to cohort 1 for validation. For statistical analyses, data were summarized as mean (SD), median [25 th - 75 th percentile], median (minimum, maximum) and number (%) according distribution. Hypothesis testing between SGA status used Mann- Whitney rank sum test for continuous and Fisher’s exact test for categorical data.
- ROC area receiver operating characteristic curve
- PPV positive
- NPV negative
- Significance level was set at 0.05 and no adjustment was made for multiple comparisons.
- Statistical software used was Stata vl5 (StataCorp. 2017. Stata Statistical Software: Release 15. College Station, TX: StataCorp LLC) and diagt program (Summary statistics for diagnostic tests. P. T. Seed and A. Tobias. Reprinted in Stata Technical Bulletin Reprints, vol. 10, pp. 90-93., from http://fmwww.bc.cdu/RePEc/bocode/d last accessed 1 Nov 2018) or Graphpad Prism 6 (GraphPad Software, LA Jolla, CA).
- Circulating SPINT1 concentrations ⁇ 0-63 MoMs at 36 weeks’ gestation in cohort 2 identified a group with an elevated risk of birthing low birthw eight infants (table 1). Significantly, 46-5% who screened positive had a birthweight centile ⁇ 20th. We validated the diagnostic test performance of this SPINT1 cut-off in cohort 1 from the FLAG study (Table 4).
- Table 5 Development and validation of a 4-tier risk model for delivery of neonates with different low birthw eight cut-offs.
- Risk model developed by selecting different thresholds of circulating levels SPINT1 MoM concentrations measured among pregnant women at 35+0-37+0 weeks’ gestation in cohort 2. The same set thresholds were then applied to cohort
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| WO2022040187A1 (en) * | 2020-08-17 | 2022-02-24 | The Board Of Trustees Of The Leland Stanford Junior University | Compositions and methods of predicting time to onset of labor |
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| RU2738685C1 (en) * | 2020-08-11 | 2020-12-15 | Федеральное государственное автономное образовательное учреждение высшего образования "Белгородский государственный национальный исследовательский университет" (НИУ "БелГУ") | Method for prediction of newborn's weight in pregnant women with pre-eclampsia and a family history of pre-eclampsia |
| WO2022040187A1 (en) * | 2020-08-17 | 2022-02-24 | The Board Of Trustees Of The Leland Stanford Junior University | Compositions and methods of predicting time to onset of labor |
| WO2025255626A1 (en) * | 2024-06-12 | 2025-12-18 | The University Of Melbourne | Antigen-binding molecules and uses thereof |
Also Published As
| Publication number | Publication date |
|---|---|
| US12546786B2 (en) | 2026-02-10 |
| EP3803394B1 (en) | 2026-04-22 |
| EP3803394A1 (en) | 2021-04-14 |
| CA3100851A1 (en) | 2019-11-28 |
| AU2019275491B2 (en) | 2025-05-29 |
| EP3803394A4 (en) | 2022-06-08 |
| US20210199663A1 (en) | 2021-07-01 |
| AU2019275491A1 (en) | 2020-12-10 |
| CN112513633A (en) | 2021-03-16 |
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