WO2020180581A1

WO2020180581A1 - Inducing caspase activity

Info

Publication number: WO2020180581A1
Application number: PCT/US2020/020028
Authority: WO
Inventors: Caroline Woelfle-Gupta; Andrew Scott; Matt Lebaron; Daniel Wilson; Susan L. Jordan; Robert Schmitt; Raja SETTIVARI
Original assignee: Dow Global Technologies LLC
Current assignee: Dow Global Technologies LLC
Priority date: 2019-03-05
Filing date: 2020-02-27
Publication date: 2020-09-10
Anticipated expiration: 2021-09-05
Also published as: JP7504901B2; EP3934662A1; JP2022522507A; US12251399B2; US20220175822A1; CN113473996A; CN113473996B

Abstract

Embodiments are directed towards methods of inducing caspase activity. The methods include contacting a cell with a treatment compound represented by the following Formula (I), where the treatment compound is a random copolymer, R1 is selected from hydrogen and a hydroxyl group, R2 is selected from hydrogen and a hydroxyl group, R1 is different than R2, and a sum of x and y is from 4 to 20,000.

Description

INDUCING CASPASE ACTIVITY

Field of Disclosure

[0001] Embodiments of the present disclosure are directed towards methods inducing caspase activity.

Background

[0002] Cancer is a group of diseases involving abnormal cell growth. Colorectal cancer, which may be referred to as colon cancer or bowel cancer, is a cancer from uncontrolled cell growth in the colon or rectum.

[0003] Colorectal cancer is a commonly diagnosed malignancy. Treatments for colorectal cancer can include surgery, radiation therapy, and/or chemotherapy. However, there remains a need for new methods and/or new compositions that may be utilized for treatment.

Summary

[0004] The present disclosure provides methods of inducing caspase activity, the method comprising contacting a cell with a treatment compound represented by the

following Formula:

where the treatment compound is a random copolymer, R¹ is selected from hydrogen and a hydroxyl group, R² is selected from hydrogen and a hydroxyl group, R¹ is different than R², and a sum of x and y is from 4 to 20,000.

[0005] The above summary of the present disclosure is not intended to describe each disclosed embodiment or every implementation of the present disclosure. The

description that follows more particularly exemplifies illustrative embodiments. In

several places throughout the application, guidance is provided through lists of examples, which examples can be used in various combinations. In each instance, the recited list serves only as a representative group and should not be interpreted as an exclusive list. Detailed Description

[0006] While not wishing to be bound to theory, one mechanism involved in the development of colorectal cancer is the mutation of the APC (Adenomatous Polyposis Coli) gene, which produces the APC protein. The APC protein is part of a protein-based destruction complex that helps to prevent the accumulation of the b-catenin protein in a cell. The APC protein and the b-catenin protein are part of one of the WNT

(Wingless/Integrated) signaling transduction pathways that pass signals into a cell through cell surface receptors. In general, when cells are stimulated by WNT, the destruction complex is deactivated, and b-catenin protein will enter the nucleus and bind to the transcription factor (TCF) which controls the transcription of genetic information. The genes involved in regular cell progression will be activated and it is a regulated process. Without the APC protein, b-catenin protein will continuously accumulate to high levels and translocate into the nucleus, bind to the TCF, which can then bind to DNA, and activate the transcription of proto-oncogenes. When proto-oncogenes are inappropriately expressed at high levels, they become oncogenes. Activated oncogenes can cause cells designated for apoptosis to survive and proliferate instead, which can lead to the development of colorectal cancer.

[0007] Methods of inducing caspase activity are disclosed herein.

Advantageously, inducing caspase activity can incite apoptosis, i.e. induce cell death.

For a number of applications, apoptosis is desirable, as compared to necrosis. Inducing caspase activity can provide for degradation of a number of intracellular proteins to result in cell death. Cell death by apoptosis can be a desirable effect on colorectal cancer cells, for instance.

[0008] As used herein,“a”,“an”,“the”,“at least one”,“a number of’, and“one or more” may be used interchangeably unless indicated otherwise. The term "and/or" means one, one or more, or all of the listed items. The recitations of numerical ranges by endpoints include all numbers subsumed within that range, e.g., 1 to 5 includes 1, 1.5, 2, 2.75, 3, 3.80, 4, 5, etc.

[0009] The methods of inducing caspase activity, as disclosed herein, include contacting a cell with a treatment compound. As used herein,“treatment compound” refers to compounds that may be represented by the following Formula I:

[0010] All individual values and subranges from 4 to 20,000 are included; for example, the sum of x and y can be from a lower limit of 4, 5, 6, 7, 8, or 10 to an upper limit of 20, 000, 19,000, 18,000, 17,000, 16,000 or 15,000.

[0011] As mentioned, the treatment compound is a random copolymer. One or more embodiments of the present disclosure provide that x is different than y. One or more embodiments of the present disclosure provide that x is the same as y. While Formula I illustrates a single x group and a single y group, one of ordinary skill in the art will appreciate that the treatment compound represented by Formula I may include a plurality of x groups and/or a plurality of y groups located at various positions in the polymeric structure of the treatment compound, such that the treatment compound is a random copolymer.

[0012] The treatment compound represented by Formula I may be referred to as poly(ethylene glycol-ran-propylene glycol). Embodiments of the present disclosure provide that the treatment compound is a random copolymer, i.e. a random ethylene oxide/propylene oxide copolymer. The treatment compound can be formed by utilizing propylene glycol and/or dipropylene glycol as an initiator and adding a mixed feed of ethylene oxide and propylene oxide, for instance.

[0013] One or more embodiments provide that the treatment compound is unmodified, which may be referred to as unsubstituted. In other words, the polymeric backbone of the treatment compound includes only structural units derived from ethylene oxide and propylene oxide.

[0014] The treatment compound may include from 10 to 90 weight percent of structural units derived from ethylene oxide, based upon a total weight of the treatment compound. All individual values and subranges from 10 to 90 weight percent are included; for example, the treatment compound can include from a lower limit of 10, 15, 20, 30, or 40 weight percent to an upper limit of 90, 85, 80, 70, or 60 weight percent of structural units derived from ethylene oxide, based upon a total weight of the treatment compound.

[0015] The treatment compound may include from 10 to 90 weight percent of structural units derived from propylene oxide, based upon a total weight of the treatment compound. All individual values and subranges from 10 to 90 weight percent are included; for example, the treatment compound can include from a lower limit of 10, 15, 20, 30, or 40 weight percent to an upper limit of 90, 85, 80, 70, or 60 weight percent of structural units derived from propylene oxide, based upon a total weight of the treatment compound.

[0016] Embodiments of the present disclosure provide that the treatment compound has a number average molecular weight (Mn) from 200 to 2,000,000 g/mol.

All individual values and subranges from 200 to 2,000,000 g/mol are included; for example, the treatment compound can have Mn from a lower limit of 200, 300, 400, 450, 500, or 600 g/mol to an upper limit of 2,000,000, 1,750,000, 1,500,000, 1,250,000, 1,000,000, 750,000, 500,000, 250,000, 100,000, 75,000, 50,000, 25,000, 10,000, 8000, 7500, 7000, or 6500 g/mol.

[0017] The treatment compound may be prepared using known methods, equipment, and/or conditions, which may vary for different applications. The treatment compound may be obtained commercially.

[0018] As mentioned, methods of inducing caspase activity, as disclosed herein, include contacting a cell with the treatment compound. One or more embodiments of the present disclosure provide that contacting the cell with the treatment compound occurs in vivo. One or more embodiments of the present disclosure provide that contacting the cell with the treatment compound occurs in vitro. The cell may be contacted with the treatment compound by utilizing a number of different known methods, equipment, and/or conditions. Various methods, equipment, and/or conditions may be utilized for different applications

[0019] The treatment compound may be utilized with a known treatment medium.

For instance, the treatment compound may be dissolved, to provide an effective amount, in a known treatment medium prior to contacting the cell. One or more embodiments provide that the treatment compound and the treatment medium may be combined to form a solution. The solution may be a homogeneous solution. Examples of treatment mediums include, but are not limited to, DMEM (Dulbecco’s Modified Eagle Medium), RPMI 1640, and McCoy’s 5 A, and combinations thereof, among others. A number of treatment mediums are commercially available.

[0020] The treatment compound can have a 0.001 millimolar (mM) to 75 mM concentration in the treatment medium. All individual values and subranges from 0.001 to 75 mM are included; for example, the effective concentration can be from a lower limit of 0.001, 0.005, 0.01, 0.1 or 1.0 mM to an upper limit of 75, 72, 70, 68, or 65 mM of the treatment compound in the treatment medium.

[0021] The cell may be contacted with an effective amount of the treatment compound. As used herein, the term“effective amount”, which may be used

interchangeably with“therapeutic effective amount” and/or“therapeutic amount”, refers to an amount of the treatment compound that is sufficient to provide the intended application, e.g., induce caspase activity. Contacting the cell with an effective amount of the treatment compound may desirably provide a disease treatment, e.g., a colorectal cancer treatment, where undesirable cells are subject to cell death by apoptosis that results from inducing caspase activity. The effective amount may vary depending upon the particular application, e.g., in vitro or in vivo, the subject being treated, e.g., the weight and age of the subject, the severity of the disease condition, and/or the manner of administration, among other considerations, which can readily be determined by one of ordinary skill in the art. As used herein, a“subject” that is treated refers to any member of the animal kingdom, e.g., mammals, including humans.

[0022] Embodiments of the present disclosure provide that specific doses may vary depending on the particular treatment compound utilized, the dosing regimen to be followed, timing of administration, and/or the physical delivery system in which the treatment compound is carried. For instance, the effective amount of the treatment compound may be contacted with the cell by a single dosing or by multiple dosings.

[0023] Embodiments of the present disclosure provide that the cell that is contacted with the treatment compound is a cancerous cell. For instance, the cell may be a colorectal cancer cell. Colorectal cancer cells may also be referred to as colon cancer cells, bowel cancer cells, and/or colorectal adenocarcinoma cells. One or more embodiments of the present disclosure provide that additional cells, i.e. non-cancerous cells, may be contacted with the treatment compound.

[0024] While not intending to be bound by theory, caspases, which may be referred to as cysteine-aspartic acid proteases, are a family of cysteine proteases involved in apoptosis. There are two types of caspases: initiator caspases, which include caspase 2,8,9,10,11,12, and effector caspases, which include caspase 3,6,7. One or more embodiments of the present disclosure provide that contacting a cell with a treatment compound induces an effector caspase activity. One or more embodiments of the present disclosure provide that the caspase is selected from caspase 3, caspase 6, caspase 7, or combinations thereof.

[0025] As mentioned, inducing caspase activity can advantageously incite apoptosis. Induced caspase activity may be determined by a number of different known methods, equipment, and/or conditions. For instance, induced caspase activity may be evidenced by an average relative caspase activity greater than one ( >1), e.g., for a number of experimental runs, as determined by Caspase-Glo 3/7 Assay 4.B. Standard Protocol for Cells in a 96-Well Plate, available from Promega. As used herein,“relative caspase activity” can be utilized interchangeably with relative apoptosis.

[0026] Utilizing the treatment compound, as discussed herein, may

advantageously provide an improved, i.e. reduced, laxative effect, as compared to some other polymeric compounds utilized for cancer treatment. This reduced laxative effect may help to provide a desirable increase with patient compliance, as compared to some other polymeric compounds associated with a relatively greater laxative effect.

[0027] One or more embodiments of the present disclosure provide a method of treating colorectal cancer. The method can include contacting a colorectal cancer cell with the treatment compound.

[0028] One or more embodiments of the present disclosure provide a method of treating cancer. The method can include administering the treatment compound to a mammal.

EXAMPLES [0029] In the Examples, various terms and designations for materials are used including, for instance, the following:

[0030] Polyethylene glycol ran-propylene glycol) (Mn of 2500 g/mol; obtained from Sigma-Aldrich);

[0031] Cells (human colon; colorectal adenocarcinoma; HT-29 (ATCC® HTB-

3); obtained from ATCC);

[0032] McCoy’s 5 A (growth medium; obtained from ThermoFisher Scientific);

[0033] Fetal bovine serum (obtained from ATCC);

[0034] Dulbecco’s Phosphate-Buffered Saline (GIBCO 14190-144; obtained from

ThermoFisher Scientific);

[0035] Complete Growth Medium (ATCC® 30-2007; obtained from ATCC);

[0036] Trypsin-EDTA (GIBCO Trypsin-EDTA (0.25%); Catalog number

25200056; obtained from ThermoFisher Scientific);

[0037] Thiazolyl Blue Tetrazolium Bromide (obtained from ThermoFisher

Scientific);

[0038] Dulbecco's Phosphate-Buffered Saline with calcium and magnesium

(GIBCO 14040-133; obtained from ThermoFisher Scientific);

[0039] Caspase-Glo 3/7 Assay (luminescent assay; Catalog number G8093;

obtained from Promega);

[0040] Dimethyl sulfoxide (Catalog number 276855; obtained from Sigma-

Aldrich).

[0041] Culture Initiation and Maintenance

[0042] Culture initiation and maintenance was performed as follows. Culture initiation and maintenance was performed in accordance with“Thawing, Propagating, and Cry opreserving Protocol” NCI-PBCF-HTB38 (HT-29) Colon Adenocarcinoma (ATCC®HTB-38™); February 27, 2012; Version 1.6.

[0043] HT-29 (ATCC® HTB-38™) cells (which contained approximately 1 x 10⁶ cells per mL) were initiated and seeded into a T-25 flask containing McCoy’s 5 A and fetal bovine serum (10% (v/v)). Then, ATCC® 30-2007 (warmed in 37° C water bath for at least 15 minutes) was used to expand the HT-29 cells. The cells were grown in a humidified incubator (SANYO INCT-16-CMT; MCO-19AIC (UV)) maintained at 37° C and 5% CO2. Then, the cells were rinsed with IX Dulbecco's Phosphate-Buffered Saline and sub-cultured in T-75 flasks 1 to 3 times per week using IX Trypsin-EDTA, applied for < 5 minutes; enzymatic action of the trypsin-EDTA was stopped by adding complete growth medium to the detached cells. Then, upon reaching 80 to 90% confluency the cells were split into the following split ratio ranges: 1 :5 to 1 : 16. Subculture and growth expansion activities were recorded, such as passage number, % confluency, % viability (only on experimental set-up day), and cell morphology throughout all phases. The cells were maintained in log-phase growth.

[0044] Cell Culture Plating (Day 0)

[0045] Cell culture plating was performed as follows. A cell suspension from a single 80 to 90% confluent T-75 flask was harvested with trypsin-EDTA and complete growth medium. To obtain cell concentration and viability, cell counts were obtained using a COUNTESS automated cell counter (INVITROGEN Cl 0227; CNTR-7-CMT) in which 2 chambers of each slide were provided with 10 pL each of 1 : 1, 0.4% trypan-blue dye (INVITROGEN T 10282) and cell suspension. Cell counts and percent viability were averaged from both chambers of a single slide. Then, viable cells (defined as viability > 90%) containing complete growth medium were plated onto sterile 96-well plates using a multi-channel pipette. Per cell density, between 5000 and 6000 cells per well (40,000 to 48,000 cells per mL) were added to each well, except for wells that were utilized as ‘saline only’ no cell control wells; equal volumes each of 125 pL of cell suspension were added per well beginning with row A to H on the plate. The plates used for each of 2 endpoints, apoptosis and cytotoxicity, were solid white plates and clear plates, respectively. The cells were incubated for 24 ± 2 hours to allow attachment.

[0046] Polviethylene glycol-ran-propylene glycol) Stock Preparation

[0047] Stock solutions were prepared at respective target concentrations of poly(ethylene glycol-ran-propylene glycol) in sterile saline. For the assays, based on the solubility limits due to high molecular weight, adjustments to lower stock concentration preparations (w/v) to generate either a solution or a pipettable suspension were made if necessary, or solubilization was achieved by adding small increments of saline, continuous mixing, vortexing, sonicating, or stirring prior to use in assay. If necessary for solubilization, the saline was pre-heated to 37° C prior to mixing with the poly(ethylene glycol-ran-propylene glycol). Total volumes of 10 mL were prepared per tested substance on the day of cell suspension plating (Day 0).

[0048] Cytotoxicity Reagent Preparation

[0049] Thiazolyl blue tetrazolium bromide was prepared at 5 mg/mL in

Dulbecco's Phosphate-Buffered Saline with calcium and magnesium. Total volumes of 30 mL were prepared (w/v) per set-up day (Day 0) and stored at 4°C until use.

[0050] Dosing Solution Preparation (Day 0)

[0051] Dosing solutions/suspensions of each test substance stock were prepared in a total of 15 mL each of McCoy’s 5A and 1% fetal bovine serum. Various amounts of dosing stock were utilized to achieve dosing solutions/suspensions from 0.0015 to 60 mM. The dosing solutions/suspensions were prepared in sterile reservoirs and repeatedly mixed with a pipette until visible uniformity was achieved. Using a 2 mL capacity sterile 96-deep well block, 2 mL of dosing solution/suspension was added to each of 6 replicate wells for the treatment groups and each of 12 wells for the saline only cell controls and saline only‘no cell’ background correction controls. The plates were established following a semi-randomized statistical design. Each test substance was identified numerically and via a color code used for identifying wells to be treated. The blocks were covered with sealing tape, plate lid and placed into a 4 °C lab refrigerator (Fischer Scientific, 135B1; RFR-22-CMT) overnight.

[0052] Treatment (Day 1)

[0053] All 96-deep well blocks containing dosing solutions/suspensions were removed from the refrigerator and placed in a 37°C bead bath for a minimum of 30 minutes. Approximately 24 hours after plating, well plates were removed from the incubator and treated one at a time. All wells from a cell plate were aspirated using a 6- well aspirating device starting with row A to H. Using a multi-channel pipette, 100 pL each of dosing solution/suspension (from the blocks) was added to each well of the 96- well cell treatment plate; starting from row A to row H (same order). All wells were aspirated and treated 2 rows at a time to prevent well drying and maintain cell attachment and viability; pipette tips were changed per row. All plates were placed into the incubator and allowed to treat for 24 ± 2 or 48 ± 2 hours prior to harvest.

[0054] Harvest (Day 2 and Day 3) [0055] Apoptosis

[0056] Assessment of apoptosis was performed as follows. Apoptosis was performed in accordance with“Caspase-Glo 3/7 Assay” 4.B. Standard Protocol for Cells in a 96-Well Plate (Promega). The Caspase-Glo 3/7 Assay components were pre warmed to room temperature for approximately 60 minutes. White plates were removed (one at a time) from the incubator and the treatment medium was aspirated. Using a multi-channel pipette, 100 pL of IX Dulbecco's Phosphate-Buffered Saline was added to each well of the 96-well plate. The Assay reagents (buffer and substrate) were manually mixed and added to a reagent reservoir; using a multi-channel pipette, 100 pL of the Assay reagent mixture was added to each well of the 96-well plate. The plate(s) (protected with foil from light) were placed on a plate shaker and allowed to rotate for 5 minutes at approximately 800 rpm at room temperature. The plates were then incubated at room temperature for an additional 25 minutes prior to analysis. Luminescence was recorded in terms of Relative Light Units (RLU) for each plate on a FLUOstar Omega Plate Reader.

[0057] Cytotoxicity

[0058] Assessment of cytotoxicity was performed as follows. Cytotoxicity reagent (5 mg/mL), as previously described, was pre-warmed to room temperature for approximately 30 minutes and then diluted into IX Dulbecco's Phosphate-Buffered Saline with calcium and magnesium to provide a concentration of 0.675 mg/mL (final). Clear plates were removed from the incubator (one at a time) and the treatment medium was aspirated. Using a multi-channel pipette, 200 pL of the cytotoxicity reagent (final) was added to each well of the 96-well plate; then the plates were covered with sealing tape and incubated in a humidified 37 °C incubator for 4 hours. Following incubation, the supernatant was aspirated and dimethyl sulfoxide (200 pL) was added to each well. Following thorough mixing by repeat pipetting, the cell lysate was transferred to a new clear 96-well plate and absorbance was quantified at 600 and 630 nm on a FLUOstar Omega Plate Reader.

[0059] Analysis

[0060] Relative caspase activity was calculated as follows: (RLU Foreground) -

(RLU Saline Only‘no cell’ control) ⁼ (RLU Background corrected); [0061] ((RLU Background corrected) of each test substance containing well) / (Average

(RLU Foreground) of 12 saline only control wells) = relative caspase activity; where RLU = relative light unit.

[0062] Relative caspase activity of each test substance containing well / 6 replicates = Average relative caspase activity. The results are reported in Table for the various utilized concentrations.

[0063] Cell viability was calculated as follows:

[0064] (Abs 600 Foreground)^— (Abs 600 Saline Only‘no cell’ control) ⁼ (Abs 600 Background corrected)

[0065] (Abs 630 Foreground)^— (Abs 630 Saline Only‘no cell’ control) ⁼ (Abs 630 Background corrected)

[0066] (Abs 600 Background corrected)^— (Abs 630 Background corrected) ⁼ (Abs 600-63o)

[0067] ((Abs 6oo-63o) of each test substance containing well) / (Average (Abs 6oo-

₆₃₀₎ of 12 saline only control wells) = % Cell Viability

[0068] % Cell Viability of each test substance containing well / 6 replicates =

Average % Cell Viability. The results are reported in Table 2 for the various utilized concentrations.

Table 1

[0069] The data of Table 1 illustrate that advantageous relative caspase activities, i.e. average relative caspase activity >1, were provided when cells were exposed to 15,

30, and 60 mM concentrations of poly(ethylene glycol-ran-propylene glycol) , as indicted by the respective average relative caspase activity (Runs 1, 2, 3) values.

Table 2

[0070] The data of Table 2 illustrate that desirable adequate viability, i.e. average viability % of 50% or greater for (Runs 1, 2, 3) were provided after 24 hours when cells were exposed to 15, 30, and 60 mM concentrations of polyethylene glycol-ran-propylene glycol).

Claims

Claims What is claimed is:

1. A method of inducing caspase activity, the method comprising contacting a cell with a treatment compound represented by the following Formula:

2. The method of claim 1, wherein the treatment compound has a number average molecular weight from 200 to 2,000,000 g/mol.

3. The method of claim 1, wherein the treatment compound has a 0.001 millimolar to 75 millimolar concentration in a treatment medium.

4. The method of claim 1, wherein the cell is a cancerous cell.

5. The method of claim 1, wherein the caspase is an effector caspase.

6. The method of claim 1, wherein the caspase is selected from caspase 3, caspase 6, caspase 7, or combinations thereof.

7. The method of claim 1, further comprising inciting apoptosis.