WO2020210231A1 - Compositions and methods for the cry opreservation of immune cells - Google Patents
Compositions and methods for the cry opreservation of immune cells Download PDFInfo
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- WO2020210231A1 WO2020210231A1 PCT/US2020/027070 US2020027070W WO2020210231A1 WO 2020210231 A1 WO2020210231 A1 WO 2020210231A1 US 2020027070 W US2020027070 W US 2020027070W WO 2020210231 A1 WO2020210231 A1 WO 2020210231A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
- C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
- C07K14/4702—Regulators; Modulating activity
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N1/00—Preservation of bodies of humans or animals, or parts thereof
- A01N1/10—Preservation of living parts
- A01N1/12—Chemical aspects of preservation
- A01N1/122—Preservation or perfusion media
- A01N1/125—Freeze protecting agents, e.g. cryoprotectants or osmolarity regulators
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N1/00—Preservation of bodies of humans or animals, or parts thereof
- A01N1/10—Preservation of living parts
-
- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N1/00—Preservation of bodies of humans or animals, or parts thereof
- A01N1/10—Preservation of living parts
- A01N1/16—Physical preservation processes
- A01N1/162—Temperature processes, e.g. following predefined temperature changes over time
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
- A61P1/16—Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
- A61P37/04—Immunostimulants
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/06—Animal cells or tissues; Human cells or tissues
- C12N5/0602—Vertebrate cells
- C12N5/0634—Cells from the blood or the immune system
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
- C07K2319/10—Fusion polypeptide containing a localisation/targetting motif containing a tag for extracellular membrane crossing, e.g. TAT or VP22
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/80—Fusion polypeptide containing a DNA binding domain, e.g. Lacl or Tet-repressor
Definitions
- cryopreservation of immune cells such as peripheral blood mononuclear cells (PBMCs) by pre-treating the cells with a PTD-MYC fusion protein (e.g., an HIV TAT-MYC fusion polypeptide) prior to freezing.
- Kits for use in practicing the methods are also provided herein.
- BACKGROUND Cryopreservation is a process in which cells are preserved by cooling them to low temperatures. At these low temperatures, biological activity, including the biochemical reactions that would lead to cell death under normal conditions, are effectively stopped. However, if not properly controlled, cryopreservation can lead to cell damage and a decrease in cell viability. Further, after the freeze-thaw process, cells normally need to be cultured to ensure proper recovery.
- the present disclosure provides a frozen composition that includes (a) a MYC fusion polypeptide, comprising (i) a protein transduction domain, (ii) a MYC polypeptide sequence; and (b) one or more peripheral blood mononuclear cells (PBMCs) isolated from a donor subject, wherein the composition exhibits increased cell viability compared to control PBMC cells isolated from the subject.
- the protein transduction domain sequence is a TAT protein transduction domain sequence.
- the protein transduction domain is TAT [48-57] .
- the protein transduction domain is TAT[57-48].
- the MYC fusion polypeptide comprises SEQ ID NO: 1.
- the one or more peripheral blood mononuclear cells comprises a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, a macrophage, or any combination thereof.
- the compositions further include a cell suspension medium.
- the cell suspension medium comprises CHB media, CS5 media, or CS10 media.
- the composition exhibits increased cell recovery when thawed as compared to control PBMCs in the absence of the MYC fusion polypeptide after a freeze-thaw cycle.
- the composition exhibits increased expression of CD25 after cell activation as compared to control PBMCs in the absence of the MYC fusion polypeptide after a freeze-thaw cycle.
- the present disclosure provides an immune cell bank comprising the frozen composition.
- the present disclosure provides a method of cryopreserving peripheral blood mononuclear cells (PBMCs) that includes (a) contacting a composition comprising one or more PBMCs isolated from a donor subject with an effective amount of a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence; and (b) cooling the PBMCs to a temperature sufficient to freeze the composition.
- PBMCs peripheral blood mononuclear cells
- the protein transduction domain sequence is a TAT protein transduction domain sequence. In some embodiments, the protein transduction domain is TAT[48-57]. In some embodiments, the protein transduction domain is TAT[57-48]. In some embodiments, the MYC fusion polypeptide comprises SEQ ID NO: 1. In some embodiments, the one or more peripheral blood mononuclear cells comprises a T-cell, a B- cell, an NK cell, a monocyte, a granulocyte, or any combination thereof. In some
- the method further includes suspending the PBMCs in a cell suspension medium.
- the cell suspension medium comprises CHB media, CS5 media, or CS10 media.
- the composition comprising one or more PBMCs is contacted with the MYC fusion polypeptide at a concentration of about 0.5 ⁇ g/mL to about 500 ⁇ g/mL.
- the composition comprising one or more PBMCs is contacted with the MYC fusion polypeptide at a concentration of about 0.5 ⁇ g/mL to about 10 ⁇ g/mL.
- the composition comprising one or more PBMCs is contacted with the MYC fusion polypeptide for less than 24 hours prior to step (b). In some
- the composition comprising one or more PBMCs is contacted with the MYC fusion polypeptide for about 1 hour prior to step (b).
- the PBMCs are washed following step (a) and prior to step (b).
- the PBMCs are cooled using a controlled-rate cryogenic freezer.
- the PBMCs are cooled at a rate of about -1°C per min.
- the temperature sufficient to freeze the composition is about -80°C to about -190°C.
- the method further includes thawing of the cryopreserved cells, such that the cells exhibit one or more of increased cell viability, increased cell recovery, cell activation, or increased expression of CD25 after cell activation as compared to control PBMCs not contacted with an effective amount of the MYC fusion polypeptide.
- method of using cells that have been cryopreserved using a MYC fusion polypeptide comprising the MYC fusion polypeptides, the MYC fusion polypeptide-modified immune cells, and/or the frozen composition of the present technology of any embodiment described herein and instructions for use.
- the present disclosure provides an immune cell bank comprising: (a) a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence; and (b) one or more peripheral blood mononuclear cells (PBMCs) isolated from a donor subject.
- PBMCs peripheral blood mononuclear cells isolated from a donor subject.
- FIG.1 illustrates the cell viability of immune cells (e.g., peripheral blood mononuclear cells (PBMC)), following pre-treatment with a PTD-MYC fusion polypeptide (TBX-3400) or vehicle control (PBMC), cryopreservation under various conditions, and thawing.
- PBMC peripheral blood mononuclear cells
- FIG.2 illustrates the cell recovery (%) of immune cells (PBMC), following pre- treatment with a PTD-MYC fusion polypeptide, cryopreservation under various conditions, and thawing.
- PBMC immune cells
- FIG.3 illustrates the relative amounts of cell populations of immune cells (T- cells, B-cell, monocytes, granulocytes, and NK cells) isolated from donor subjects recovered, following pre-treatment with the PTD-MYC fusion polypeptide or vehicle control, cryopreservation under various conditions, and thawing.
- Cells were frozen in CHB media, CS5 media, or CS10 media as indicated, and frozen in a CoolCell® container of VIA
- FIG.4 illustrates cell activation of control cells and immune cells, expressed as median fluoresce intensity (Median FI) for CD25 expression, following pre-treatment with the PTD-MYC fusion polypeptide or vehicle control, cryopreservation under various conditions, and thawing.
- Cells were frozen in CHB media, CS5 media, or CS10 media as indicated, and frozen in a CoolCell® container of VIA FreezeTM controlled rate freezer. Cells were activated with either a single stimulatory molecule (CD3) alone, or in combination with a co-stimulatory molecule (CD28).
- CD3 single stimulatory molecule
- CD28 co-stimulatory molecule
- FIG.5 illustrates cell activation of control cells and immune cells, expressed as %CD25 positive cells, following pre-treatment with the PTD-MYC fusion polypeptide or vehicle control, cryopreservation under various conditions, and thawing.
- Cells were frozen in CHB media, CS5 media, or CS10 media as indicated, and frozen in a CoolCell® container of VIA FreezeTM controlled rate freezer.
- Cells were activated with either a single stimulatory molecule (CD3) alone, or in combination with a co-stimulatory molecule (CD28).
- CD3 single stimulatory molecule
- CD28 co-stimulatory molecule
- each range discussed herein can be readily broken down into a lower third, middle third and upper third, etc.
- all language such as“up to,”“at least,”“greater than,”“less than,” and the like include the number recited and refer to ranges which can be subsequently broken down into subranges as discussed above.
- a range includes each individual member.
- a group having 1-3 cells refers to groups having 1, 2, or 3 cells.
- a group having 1-5 cells refers to groups having 1, 2, 3, 4, or 5 cells, and so forth.
- amino acid refers to naturally occurring and non-naturally occurring amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to the naturally occurring amino acids.
- Naturally encoded amino acids are the 20 common amino acids (alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine) and pyrolysine and
- Amino acid analogs refer to agents that have the same basic chemical structure as a naturally occurring amino acid, i.e., an a carbon that is bound to a hydrogen, a carboxyl group, an amino group, and an R group, such as, homoserine, norleucine, methionine sulfoxide, methionine methyl sulfonium. Such analogs have modified R groups (such as, norleucine) or modified peptide backbones, but retain the same basic chemical structure as a naturally occurring amino acid.
- amino acids forming a polypeptide are in the D form.
- the amino acids forming a polypeptide are in the L form.
- a first plurality of amino acids forming a polypeptide are in the D form and a second plurality are in the L form.
- Amino acids are referred to herein by either their commonly known three letter symbols or by the one-letter symbols recommended by the IUPAC-IUB Biochemical Nomenclature Commission. Nucleotides, likewise, are referred to by their commonly accepted single-letter code.
- the terms“polypeptide,”“peptide,” and“protein” are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to naturally occurring amino acid polymers as well as amino acid polymers in which one or more amino acid residues is a non-naturally occurring amino acid, e.g., an amino acid analog.
- a“control” is an alternative sample used in an experiment for comparison purpose.
- a control can be“positive” or“negative.”
- a positive control a composition known to exhibit the desired therapeutic effect
- a negative control a subject or a sample that does not receive the therapy or receives a placebo
- the term“effective amount” or“therapeutically effective amount” refers to a quantity of an agent sufficient to achieve a desired therapeutic effect.
- the amount of a therapeutic peptide administered to the subject can depend on the type and severity of the infection and on the characteristics of the individual, such as general health, age, sex, body weight and tolerance to drugs. It can also depend on the degree, severity and type of disease. The skilled artisan will be able to determine appropriate dosages depending on these and other factors.
- the term“expression” refers to the process by which polynucleotides are transcribed into mRNA and/or the process by which the transcribed mRNA is subsequently being translated into peptides, polypeptides, or proteins.
- expression can include splicing of the mRNA in a eukaryotic cell.
- the expression level of a gene can be determined by measuring the amount of mRNA or protein in a cell or tissue sample.
- the expression level of a gene from one sample can be directly compared to the expression level of that gene from a control or reference sample.
- the expression level of a gene from one sample can be directly compared to the expression level of that gene from the same sample following administration of the compositions disclosed herein.
- the term“expression” also refers to one or more of the following events: (1) production of an RNA template from a DNA sequence (e.g., by transcription) within a cell; (2) processing of an RNA transcript (e.g., by splicing, editing, 5’ cap formation, and/or 3’ end formation) within a cell; (3) translation of an RNA sequence into a polypeptide or protein within a cell; (4) post-translational modification of a polypeptide or protein within a cell; (5) presentation of a polypeptide or protein on the cell surface; and (6) secretion or presentation or release of a polypeptide or protein from a cell.
- the term“linker” refers to synthetic sequences (e.g., amino acid sequences) that connect or link two sequences, e.g., that link two polypeptide domains.
- the linker contains 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 of amino acid sequences.
- immune cell refers to any cell that plays a role in the immune response. Immune cells are of hematopoietic origin, and include lymphocytes, such as B cells and T cells; natural killer cells; myeloid cells, such as monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, and granulocytes.
- lymphocytes such as B cells and T cells
- natural killer cells myeloid cells, such as monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, and granulocytes.
- lymphocyte refers to all immature, mature, undifferentiated and differentiated white lymphocyte populations including tissue specific and specialized varieties. It encompasses, by way of non-limiting example, B cells, T cells, NKT cells, and NK cells.
- lymphocytes include all B cell lineages including pre-B cells, progenitor B cells, early pro-B cells, late pro-B cells, large pre-B cells, small pre-B cells, immature B cells, mature B cells, plasma B cells, memory B cells, B-1 cells, B-2 cells and anergic AN1/T3 cell populations.
- T-cell includes na ⁇ ve T cells, CD4+ T cells, CD8+ T cells, memory T cells, activated T cells, anergic T cells, tolerant T cells, chimeric T cells, antigen-specific T cells, and regulatory T cells.
- B cell refers to, by way of non-limiting example, a pre-B cell, progenitor B cell, early pro-B cell, late pro-B cell, large pre-B cell, small pre-B cell, immature B cell, mature B cell, na ⁇ ve B cells, plasma B cells, activated B cells, anergic B cells, tolerant B cells, chimeric B cells, antigen-specific B cells, memory B cell, B-1 cell, B-2 cells and anergic AN1/T3 cell populations.
- the term B cell includes a B cell that expresses an immunoglobulin heavy chain and/or light chain on its cells surface.
- the term B cell includes a B cell that expresses and secretes an immunoglobulin heavy chain and/or light chain. In some embodiments, the term B cell includes a cell that binds an antigen on its cell-surface. In some embodiments disclosed herein, B cells or AN1/T3 cells are utilized in the processes described. In certain embodiments,
- such cells are optionally substituted with any animal cell suitable for expressing, capable of expressing (e.g., inducible expression), or capable of being
- a cell suitable for expressing an antibody including, e.g., a hematopoietic stem cell, a na ⁇ ve B cell, a B cell, a pre-B cell, a progenitor B cell, an early Pro-B cell, a late pro-B cell, a large pre-B cell, a small pre-B cell, an immature B cell, a mature B cell, a plasma B cell, a memory B cell, a B-1 cell, a B-2 cell, an anergic B cell, or an anergic AN1/T3 cell.
- an antibody including, e.g., a hematopoietic stem cell, a na ⁇ ve B cell, a B cell, a pre-B cell, a progenitor B cell, an early Pro-B cell, a late pro-B cell, a large pre-B cell, a small pre-B cell, an immature B cell, a mature B cell, a plasma B cell, a
- peripheral blood mononuclear cells refers to any peripheral blood cells having a round nucleus, including lymphocytes, such as T cells, B cells, NK cells, monocytes, macrophages and dendritic cells.
- adoptive cell therapeutic composition refers to any composition comprising cells suitable for adoptive cell transfer.
- the adoptive cell therapeutic composition comprises a cell type selected from a group consisting of a tumor infiltrating lymphocyte (TIL), TCR (i.e., heterologous T-cell receptor) modified lymphocytes and CAR (i.e., chimeric antigen receptor) modified lymphocytes.
- TIL tumor infiltrating lymphocyte
- TCR i.e., heterologous T-cell receptor
- CAR i.e., chimeric antigen receptor
- the adoptive cell therapeutic composition comprises a cell type selected from a group consisting of T-cells, CD8+ cells, CD4+ cells, NK-cells, delta-gamma T-cells, regulatory T-cells and peripheral blood mononuclear cells (PBMC).
- TILs, T-cells, CD8+ cells, CD4+ cells, NK-cells, delta-gamma T-cells, regulatory T-cells or peripheral blood mononuclear cells form the adoptive cell therapeutic composition.
- the adoptive cell therapeutic composition comprises T cells.
- the adoptive cell therapeutic composition may be a frozen composition comprising one or more immune cells and/or PBMCs isolated from a donor subject which have been contacted with a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence.
- MYC and “MYC gene” are synonyms. They refer to a nucleic acid sequence that encodes a MYC polypeptide.
- a MYC gene comprises a nucleotide sequence of at least 120 nucleotides that is at least 60% to 100% identical or homologous, e.g., at least 60, 65%, 70%, 75%, 80%, 85%, 86%, 87%, 88%, 90%, 91%, 92%, 94%, 95%, 96%, 97%, 98%, or any other percent from about 70% to about 100% identical to sequences of NCBI Accession Number NM—002467.
- the MYC gene is a proto- oncogene.
- a MYC gene is found on chromosome 8, at 8q24.21.
- a MYC gene begins at 128,816,862 bp from pter and ends at 128,822,856 bp from pter. In certain instances, a MYC gene is about 6 kb. In certain instances, a MYC gene encodes at least eight separate mRNA sequences—5 alternatively spliced variants and 3 unspliced variants.
- the terms“MYC protein,”“MYC polypeptide,” and“MYC sequence” are synonyms and refer to the polymer of amino acid residues disclosed in NCBI Accession Number UniProtKB/Swiss-Prot:P01106.1 (MYC isoform 1) or NP_002458.2
- NP_002458.2 (UniProtKB/Swiss-Prot:P01106.2) is:
- the MYC polypeptide is a complete MYC polypeptide sequence. In some embodiments, the MYC polypeptide is a partial MYC polypeptide sequence. In some embodiments, the MYC polypeptide comprises at least 400 consecutive amino acids of SEQ ID NO: 2 OR 11. In some embodiments, the MYC polypeptide comprises at least 400 consecutive amino acids of SEQ ID NO: 2 OR 11 and retains at least one MYC activity. In some embodiments, the MYC polypeptide comprises at least 400, at least 410, at least 420, at least 430, or at least 450 consecutive amino acids of SEQ ID NO: 2 OR 11.
- the MYC polypeptide comprises at least 400, at least 410, at least 420, at least 430, or at least 450 consecutive amino acids of SEQ ID NO: 2 OR 11 and retains at least one MYC activity.
- the MYC polypeptide is c-MYC.
- the MYC polypeptide sequence comprises the sequence shown below:
- the MYC polypeptide sequence comprises the sequence shown below:
- a MYC polypeptide comprises an amino acid sequence that is at least 40% to 100% identical, e.g., at least 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 90%, 91%, 92%, 94%, 95%, 96%, 97%, 98%, 99%, or any other percent from about 40% to about 100% identical to the sequence of NCBI Accession Number NP002458.2 or UniProtKB/Swiss-Prot Accession Number
- MYC polypeptide refers to a polymer of 439 amino acids, a MYC polypeptide that has not undergone any post-translational modifications. In some embodiments, MYC polypeptide refers to a polymer of 439 amino acids that has undergone post-translational modifications. In some embodiments, the MYC polypeptide is 48,804 kDa. In some embodiments, the MYC polypeptide contains a basic Helix-Loop-Helix Leucine Zipper (bHLH/LZ) domain. In some embodiments, the bHLH/LZ domain comprises the sequence of:
- the MYC polypeptide is a
- the MYC polypeptide contains an E-box DNA binding domain. In some embodiments, the MYC polypeptide binds to a sequence comprising CACGTG. In some embodiments, the MYC polypeptide promotes one or more of cell survival and/or proliferation. In some
- a MYC polypeptide includes one or more of those described above, and includes one or more post-translational modifications (e.g., acetylation).
- post-translational modifications e.g., acetylation
- the MYC polypeptides comprise one or more additional amino acid residues at the N-terminus or C-terminus of the polypeptide.
- the MYC polypeptides are fusion proteins.
- the MYC polypeptides are linked to one or more additional peptides at the N-terminus or C-terminus of the polypeptide.
- Proteins suitable for use in the methods described herein also includes functional variants, including proteins having between 1 to 15 amino acid changes, e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 amino acid substitutions, deletions, or additions, compared to the amino acid sequence of any protein described herein.
- the altered amino acid sequence is at least 75% identical, e.g., 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical to the amino acid sequence of any protein inhibitor described herein.
- sequence-variant proteins are suitable for the methods described herein as long as the altered amino acid sequence retains sufficient biological activity to be functional in the compositions and methods described herein. Where amino acid substitutions are made, the substitutions can be conservative amino acid substitutions.
- a“conservative amino acid substitution” is illustrated by a substitution among amino acids within each of the following groups: (1) glycine, alanine, valine, leucine, and isoleucine, (2) phenylalanine, tyrosine, and tryptophan, (3) serine and threonine, (4) aspartate and glutamate, (5) glutamine and asparagine, and (6) lysine, arginine and histidine.
- the BLOSUM62 table is an amino acid substitution matrix derived from about 2,000 local multiple alignments of protein sequence segments, representing highly conserved regions of more than 500 groups of related proteins (Henikoff et al. (1992), Proc. Natl Acad.
- the BLOSUM62 substitution frequencies are used to define conservative amino acid substitutions that, in some embodiments, are introduced into the amino acid sequences described or disclosed herein.
- the language“conservative amino acid substitution” preferably refers to a substitution
- an amino acid substitution is conservative if the substitution is characterized by a BLOSUM62 value of 0, 1, 2, or 3.
- preferred conservative amino acid substitutions are characterized by a BLOSUM62 value of at least 1 (e.g., 1, 2 or 3), while more preferred conservative amino acid substitutions are characterized by a BLOSUM62 value of at least 2 (e.g., 2 or 3).
- the phrases“E-box sequence” and“enhancer box sequence” are used interchangeably herein and mean the nucleotide sequence CANNTG, wherein N is any nucleotide. In certain instances, the E-box sequence comprises CACGTG.
- the basic helix-loop-helix domain of a transcription factor encoded by MYC binds to the E-box sequence.
- the E-box sequence is located upstream of a gene (e.g., p21, Bc1-2, or ornithine decarboxylase).
- the MYC polypeptide contains an E-box DNA binding domain.
- the E-box DNA binding domain comprises the sequence of KRRTHNVLERQRRN (SEQ ID NO: 6).
- the binding of the transcription factor encoded by MYC to the E-box sequence allows RNA polymerase to transcribe the gene downstream of the E-box sequence.
- MYC activity or“MYC biological activity” or“biologically active MYC” includes one or more of enhancing or inducing cell survival, cell proliferation, and/or antibody production.
- MYC activity includes enhancement of expansion of anti-CD3 and anti-CD28 activated T-cells and/or increased proliferation of long-term self-renewing hematopoietic stem cells.
- MYC activity also includes entry into the nucleus of a cell, binding to a nucleic acid sequence (e.g., binding an E-box sequence), and/or inducing expression of MYC target genes.
- patient refers to an animal, typically a mammal.
- patient, subject, or individual is a mammal.
- patient, subject or individual is a human.
- patient, subject or individual is an animal, such as, but not limited to, domesticated animals, such as equine, bovine, murine, ovine, canine, and feline.
- protein transduction domain or“transporter peptide sequence” (also known as cell permeable proteins (CPP) or membrane translocating sequences (MTS)) are used interchangeably herein to refer to small peptides that are able to ferry much larger molecules into cells independent of classical endocytosis.
- CPP cell permeable proteins
- MTS membrane translocating sequences
- a nuclear localization signal can be found within the protein transduction domain, which mediates further translocation of the molecules into the cell nucleus.
- “treating” or“treatment” covers the treatment of a disease in a subject, such as a human, and includes: (i) inhibiting a disease, i.e., arresting its development; (ii) relieving a disease, i.e., causing regression of the disease; (iii) slowing progression of the disease; and/or (iv) inhibiting, relieving, or slowing progression of one or more symptoms of the disease.
- “treating” or“treatment” also encompasses regression of a tumor, slowing tumor growth, inhibiting metastasis of a tumor, inhibiting relapse or recurrent cancer and/or maintaining remission.
- the various modes of treatment or prevention of medical diseases and conditions as described are intended to mean“substantial,” which includes total but also less than total treatment or prevention, and wherein some biologically or medically relevant result is achieved.
- the treatment can be a continuous prolonged treatment for a chronic disease or a single, or few time administrations for the treatment of an acute condition.
- “therapeutic” as used herein means a treatment and/or prophylaxis. A therapeutic effect is obtained by suppression, remission, or eradication of a disease state. II.
- the present disclosure relates to, in part, to the cryopreservation of a composition
- a composition comprising one or more immune cells (e.g., peripheral blood mononuclear cells (PBMC)) isolated from a donor subject, wherein the one or more immune cells are contacted with an effective amount of a PTD-MYC fusion polypeptide in vitro prior to cooling the composition to a temperature sufficient to freeze the composition.
- PBMC peripheral blood mononuclear cells
- the present disclosure relates to, in part, to the cryopreservation of a composition
- a composition comprising one or more peripheral blood mononuclear cells (PBMCs) isolated from a donor subject, wherein the one or more PBMCs are contacted with an effective amount of a PTD-MYC fusion polypeptide in vitro prior to cooling the cooling the composition to a temperature sufficient to freeze the composition.
- PBMCs peripheral blood mononuclear cells
- the present disclosure is based, at least in part, on the discovery, that contacting one or more immune cells and/or PBMCs isolated from a donor subject with a MYC fusion polypeptide containing a MYC polypeptide and a protein transduction domain (PTD), such as the HIV TAT protein transduction domain, and cooling the treated immune cells and/or PBMCs to a temperature sufficient to freeze the cells significantly increases cell viability and/or cell recovery, as well as significantly increases expression of CD25 after cell activation compared to control immune cells and/or PBMCs not treated with the MYC fusion polypeptide.
- PTD protein transduction domain
- the examples provided herein demonstrate that immune cells and/or PBMCs isolated from donor subjects which have been contacted with a TAT-MYC fusion protein prior to cryopreservation exhibit one or more of increased cell viability, increased cell recovery, increased cell activation with CD3 and CD28, or increased expression of CD25 upon cell activation when thawed as compared to control PBMCs after a freeze-thaw cycle.
- the present disclosure provides a method for
- cryopreserving immune cells comprising contacting a composition comprising one or more PBMCs isolated from a donor subject with an effective amount of a MYC fusion polypeptide, comprising (i) a protein transduction domain (PTD); (ii) a MYC polypeptide sequence, and cooling the PBMCs to a temperature sufficient to freeze the composition.
- a MYC fusion polypeptide comprising (i) a protein transduction domain (PTD); (ii) a MYC polypeptide sequence, and cooling the PBMCs to a temperature sufficient to freeze the composition.
- PBMCs peripheral blood mononuclear cells
- the method comprising contacting a composition comprising one or more PBMCs isolated from a donor subject with an effective amount of a MYC fusion polypeptide, comprising (i) a protein transduction domain (PTD); (ii) a MYC polypeptide sequence, and cooling the PBMCs to a temperature sufficient to freeze the composition.
- the protein transduction domain sequence is a TAT protein transduction domain sequence.
- the MYC polypeptide sequence comprises the amino acid sequence set forth in SEQ ID NO: 2 or 11.
- the PTD-MYC fusion polypeptide comprises the amino acid sequence set forth in SEQ ID NO: 1.
- the one or more immune cells isolated from a donor subject can include B cells, T cells, natural killer (NK) cells, myeloid cells, or any combination thereof.
- the one or more myeloid cells isolated from a donor subject can include monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, granulocytes, or any combination thereof.
- the one or more B cells isolated from a donor subject can include a pre-B cell, a progenitor B cell, an early pro-B cell, a late pro-B cell, a large pre-B cell, a small pre-B cell, an immature B cell, a mature B cell, a na ⁇ ve B cell, a plasma B cell, an activated B cell, an anergic B cell, a tolerant B cell, a chimeric B cell, an antigen-specific B cell, a memory B cell, a B-1 cell, a B-2 cell, an anergic AN1/T3 cell population, or a combination of two or more thereof.
- the one or more T cells isolated from a donor subject can include na ⁇ ve T cells, CD4+ T cells, CD8+ T cells, memory T cells, activated T cells, anergic T cells, tolerant T cells, chimeric T cells, and antigen-specific T cells, regulatory T cells, or any combination thereof.
- the one or more peripheral blood mononuclear cells can be a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, or any combination thereof.
- the method further comprises suspending the one or more immune cells, including one or more PBMCs, in a cell suspension medium.
- the cell suspension medium is suitable for cryopreservation of mammalian cells. In some embodiments, the cell suspension medium is suitable for cryopreservation of immune cells, including PBMCs. In some embodiments, the cell suspension medium comprises CHB media, CS5 media, or CS10 media. In some embodiments, the immune cells are cooled using a controlled-rate cryogenic freezer. In some embodiments, the immune cells are cooled at a rate of about -1°C per min. In some embodiments, the PBMCs are cooled using a controlled-rate cryogenic freezer. In some embodiments, the PBMCs are cooled at a rate of about -1°C per min.
- the temperature sufficient to freeze the composition is about -80°C to about -190°C. In some embodiments, the temperature sufficient to freeze the composition is about -80°C, about -82°C, about -84°C, about -86°C, about -88°C, about - 90°C, about -92°C, about -94°C, about -96°C, about -98°C, about -100°C, about -105°C, about -110°C, about -115°C, about -120°C, about -125°C, about -130°C, about -135°C, about -140°C, about -145°C, about -150°C, about -155°C, about -160°C, about -165°C, about - 170°C, about -175°C, about -180°C, about -185°C, about -190°C, or any integer value in between.
- the method further comprises thawing of the cryopreserved cells, such that the cells exhibit one or more of increased cell viability, increased cell recovery, or increased expression of CD25 after cell activation as compared to control cells not contacted with an effective amount of the MYC fusion polypeptide.
- the present disclosure provides for a frozen composition comprising a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence, and one or more immune cells isolated from a donor subject, wherein the composition exhibits increased cell viability compared to control immune cells isolated from the subject.
- the present disclosure provides for a frozen composition
- a MYC fusion polypeptide comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence, and one or more peripheral blood mononuclear cells (PBMCs) isolated from a donor subject, wherein the composition exhibits increased cell viability compared to control PBMCs isolated from the subject.
- the protein transduction domain sequence is a TAT protein transduction domain sequence.
- the MYC polypeptide sequence comprises the amino acid sequence set forth in SEQ ID NO: 2 or 11.
- the PTD-MYC fusion polypeptide comprises the amino acid sequence set forth in SEQ ID NO: 1.
- the one or more immune cells isolated from a donor subject can include B cells, T cells, natural killer (NK) cells, myeloid cells, or any combination thereof.
- the one or more myeloid cells isolated from a donor subject can include monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, granulocytes, or any combination thereof.
- the one or more B cells isolated from a donor subject can include a pre-B cell, a progenitor B cell, an early pro-B cell, a late pro-B cell, a large pre-B cell, a small pre-B cell, an immature B cell, a mature B cell, a na ⁇ ve B cell, a plasma B cell, an activated B cell, an anergic B cell, a tolerant B cell, a chimeric B cell, an antigen-specific B cell, a memory B cell, a B-1 cell, a B-2 cell, an anergic AN1/T3 cell population, or a combination of two or more thereof.
- the one or more T cells isolated from a donor subject can include na ⁇ ve T cells, CD4+ T cells, CD8+ T cells, memory T cells, activated T cells, anergic T cells, tolerant T cells, chimeric T cells, and antigen-specific T cells, regulatory T cells, or any combination thereof.
- the one or more peripheral blood mononuclear cells can be a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, or any combination thereof.
- the composition further comprises a cell suspension medium.
- the cell suspension medium comprises CHB media, CS5 media, or CS10 media.
- the composition exhibits increased cell recovery when thawed as compared to control PBMCs after a freeze-thaw cycle. In some embodiments, the composition exhibits increased expression of CD25 after cell activation as compared to control PBMCs after a freeze thaw cycle. In some embodiments, the compositions of the present technology can
- ACT adoptive cell transfer
- adoptive cell transfer is a form of immunotherapy that involves the transfer of immune cells with antitumor activity into patients.
- ACT typically involves isolation of lymphocytes with antitumor activity from a donor subject, culturing the lymphocytes in vitro to expand the population, and then infusing the lymphocytes into a patient in need thereof.
- the immune cells and/or PBMCs are primary cells isolated from a donor.
- the immune cells and/or PBMCs are modified following isolation.
- the cells are immune cells (e.g., T cells) modified to expression one or more heterologous receptors or modified receptors (e.g., a chimeric antigen receptor).
- the cells are engineered chimeric antigen receptor (CAR) T-cells.
- the cells are engineered chimeric antigen receptor (CAR) Treg-cells.
- the immune cells and modified immune cells that have been cryopreserved according to the methods provided herein can be used to increase an immune response in a subject. Exemplary uses of these cells include but are not limited to cancer immunotherapy and treatment of pathogenic infections, such as viral, bacterial, or fungal infections.
- the immune cells and modified immune cells that have been cryopreserved according to the methods provided herein can be used to decrease an immune response in a subject.
- exemplary uses of these cells include but are not limited to treatment of autoimmune and allergic diseases and conditions, such as multiple sclerosis (MS), lupus erythematosus, asthma, autoimmune uveitis, Crohn’s disease, colitis, Graft vs. host disease (GvHD), rheumatoid arthritis, inflammatory bowel disease, diabetes, and organ or tissue transplant rejection.
- the compositions of the present technology can be used for in vitro or in vivo immunological studies. In some embodiments, the compositions of the present technology can be used in methods for creating an immune cell bank for use in immunotherapy and adoptive cell transfer. III. Methods of Obtaining and Preparing Immune Cells and/or PBMCs Prior to Cryopreservation Immune cells and/or peripheral blood mononuclear cells for use in the methods provided herein can be obtained using any suitable method known in the art.
- the immune cells are primary immune cells.
- the immune cells are lymphocytes, such as T and B cells.
- the immune cells are natural killer (NK) cells.
- the immune cells are a mixture of lymphocytes and NK cells.
- the immune cells are peripheral blood mononuclear cells (PBMCs).
- PBMCs peripheral blood mononuclear cells
- the T cells are removed during surgery of a tumor or a metastatic tumor in a subject.
- the T cells are isolated after removal of tumor tissue by biopsy.
- the peripheral blood mononuclear cells (PBMCs) can be a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, or any combination thereof.
- the immune cells can be isolated from a sample containing a population of cells, such as a blood, lymph or tissue biopsy sample.
- Immune cells can be isolated from a population of cells by any means known in the art.
- the immune cells can be isolated from a whole blood sample, such as a peripheral blood sample.
- immune cells can be isolated from a leukapheresis unit.
- peripheral blood mononuclear cells can be isolated from a leukapheresis unit.
- the peripheral blood mononuclear cell fraction can be isolated from a whole blood sample via gradient separation with any suitable density gradient media.
- the density gradient media used to isolate the peripheral blood mononuclear cell fraction is Ficoll-Paque ® PLUS or Ficoll-Paque ® PREMIUM.
- the PBMC fraction is isolated from a whole blood sample via gradient separation with Ficoll-Paque ® PLUS media.
- the blood anticoagulant ethylenediaminetetraacetic acid (EDTA)
- EDTA ethylenediaminetetraacetic acid
- the methods employ collection vials coated with the EDTA.
- EDTA acts as a blood anticoagulant via chelation of Ca 2+ ions in the blood sample responsible for coagulation and clotting.
- the red blood cells of the sample are depleted from the sample.
- the method comprises obtaining a bulk population of immune cells from a tumor sample by any suitable method known in the art.
- a bulk population of immune cells can be obtained from a tumor sample by dissociating the tumor sample into a cell suspension from which specific cell populations can be selected.
- Suitable methods of obtaining a bulk population of immune cells can include, but are not limited to, any one or more of mechanically dissociating (e.g., mincing) the tumor, enzymatically dissociating (e.g., digesting) the tumor, and aspiration (e.g., as with a needle).
- the population of immune cells obtained from a sample can comprise any suitable type of immune cell including, but not limited to, B cells, T cells, natural killer (NK) cells, myeloid cells, or any combination thereof.
- the bulk population of myeloid cells obtained from a sample can include monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, granulocytes, or any combination thereof.
- the population of T cells obtained from a sample can comprise any suitable type of T cell.
- the T cells obtained from a sample can comprise na ⁇ ve T cells, CD4+ T cells, CD8+ T cells, memory T cells, activated T cells, anergic T cells, tolerant T cells, chimeric T cells, and antigen-specific T cells, or any combination thereof.
- the population of B cells obtained from a sample can comprise any suitable type of B cell.
- the B cells obtained from a sample can comprise pre-B cells, progenitor B cells, early pro-B cells, late pro-B cells, large pre-B cells, small pre-B cells, immature B cells, mature B cells, na ⁇ ve B cells, plasma B cells, activated B cells, anergic B cells, tolerant B cells, chimeric B cells, antigen-specific B cells, memory B cells, B-1 cells, B-2 cells, anergic AN1/T3 cell populations, or a combination of two or more thereof.
- the population of immune cells obtained from a sample can comprise peripheral blood mononuclear cells (PBMCs).
- PBMCs peripheral blood mononuclear cells
- the PBMCs obtained from a sample can comprise a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, or any combination thereof.
- the sample can be obtained from any mammal.
- mammal refers to any mammal including, but not limited to, mammals of the order Logomorpha, such as rabbits; the order Carnivora, including Felines (cats) and Canines (dogs); the order Artiodactyla, including Bovines (cows) and Swines (pigs); or of the order Perssodactyla, including Equines (horses).
- the mammals can be non-human primates, e.g., of the order Primates, Ceboids, or Simoids (monkeys) or of the order Anthropoids (humans and apes).
- the mammal can be a mammal of the order Rodentia, such as mice and hamsters.
- the mammal is a non-human primate or a human.
- An exemplary mammal is a human.
- immune cells can be further isolated by positive or negative selection techniques. Enrichment of an immune cell population by negative selection can be accomplished with a combination of antibodies directed to surface markers unique to the negatively selected cells.
- Cells can be enriched by cell sorting and/or selection via negative magnetic immunoadherence or flow cytometry that uses a cocktail of monoclonal antibodies directed to cell surface markers present on the cells negatively selected.
- a monoclonal antibody cocktail typically includes antibodies to CD14, CD20, CD11b, CD16, HLA-DR, and CD8.
- monocyte populations i.e., CD14+ cells
- the concentration of cells and surface can be varied.
- it can be desirable to significantly decrease the volume in which beads and cells are mixed together i.e., increase the concentration of cells, to ensure maximum contact of cells and beads.
- a concentration of 2 billion cells/mL can be used.
- a concentration of 1 billion cells/mL is used.
- greater than 100 million cells/mL can be used.
- a concentration of cells of about 10 million cells/mL, about 15 million cells/mL, about 20 million cells/mL, about 25 million cells/mL, about 30 million cells/mL, about 35 million cells/mL, about 40 million cells/mL, about 45 million cells/mL, or about 50 million cells/mL can be used.
- a concentration of cells from about 75 million cells/mL, about 80 million cells/mL, about 85 million cells/mL, about 90 million cells/mL, about 95 million cells/mL, or about 100 million cells/mL can be used.
- concentrations of about 125 million cells/mL or about 150 million cells/mL can be used.
- Using high concentrations can result in increased cell yield, cell activation, and cell expansion.
- use of high cell concentrations allows more efficient capture of cells that can weakly express target antigens of interest, such as CD28-negative T cells, or from samples where there are many tumor cells present (i.e., leukemic blood, tumor tissue, etc.).
- target antigens of interest such as CD28-negative T cells
- Such populations of cells can have therapeutic value and therefore would be desirable to obtain.
- using high concentration of cells allows more efficient selection of CD8+ T cells that normally have weaker CD28 expression.
- the concentration of cells used can be 5 ⁇ 10 6 /mL. In some embodiments, the concentration used can be from about 1 ⁇ 10 5 /mL to 1 ⁇ 10 6 /mL, or any integer value in between.
- the concentration used can be from about 1 ⁇ 10 5 /mL, about 1.1 ⁇ 10 5 /mL, about 1.2 ⁇ 10 5 /mL, about 1.3 ⁇ 10 5 /mL, about 1.4 ⁇ 10 5 /mL, about 1.5 ⁇ 10 5 /mL, about 1.6 ⁇ 10 5 /mL, about 1.7 ⁇ 10 5 /mL, about 1.8 ⁇ 10 5 /mL, about
- cells are directly labeled with an epitope-specific reagent for isolation by flow cytometry followed by characterization of cell phenotypes.
- immune cells are isolated by contacting the immune cell specific antibodies.
- PBMCs are isolated by contacting the PBMC specific antibodies. Sorting of antigen-specific T cells, or generally any cells of the present technology, can be carried out using any of a variety of commercially available cell sorters, including, but not limited to, MoFlo sorter (DakoCytomation, Fort Collins, Colo.), FACSAriaTM, FACSArrayTM,
- the PTD-MYC fusion polypeptide comprises a protein transduction domain (PTD), a MYC polypeptide that promotes one or more of cell survival or proliferation, and optionally a protein tag domain, e.g., one or more amino acid sequences that facilitate purification of the fusion protein.
- PTD protein transduction domain
- MYC polypeptide that promotes one or more of cell survival or proliferation
- a protein tag domain e.g., one or more amino acid sequences that facilitate purification of the fusion protein.
- a cell contacted with MYC polypeptide exhibits increased survival time (e.g., as compared to an identical or similar cell of the same type that was not contacted with MYC), and/or increased
- the fusion polypeptide comprises (a) a protein transduction domain; and (b) a MYC polypeptide sequence.
- the fusion polypeptide is a polypeptide of Formula (I): protein transduction domain-MYC polypeptide sequence.
- a fusion polypeptide disclosed herein comprises (a) a protein transduction domain; (b) a MYC polypeptide sequence; and (c) one or more molecules that link the protein transduction domain and the MYC polypeptide sequence.
- the fusion polypeptide is a polypeptide of Formula (II): protein transduction domain-X-MYC polypeptide sequence, wherein -X- is a molecule that links the protein transduction domain and the MYC
- a fusion polypeptide disclosed herein comprises (a) a protein transduction domain; (b) a MYC polypeptide sequence; (c) at least two protein tags; and (d) optionally linker(s).
- the fusion polypeptide is a polypeptide of Formula (III-VI): protein transduction domain-X-MYC polypeptide sequence-X-protein tag 1-X-protein tag 2
- a fusion polypeptide disclosed herein comprises (a) a protein transduction domain; (b) a MYC polypeptide sequence; (c) a 6-histidine tag; (d) a V5 epitope tag: and (e) optionally linker(s).
- the fusion polypeptide is a polypeptide of Formula (VII-XIV): protein transduction domain-X-MYC polypeptide sequence-X-6-histidine tag-X-V5 epitope tag (Formula (VII)), or protein transduction domain-MYC polypeptide sequence-X-6-histidine tag-X-V5 epitope tag
- the MYC fusion protein comprises one or more linker sequences.
- the linker sequences can be employed to link the protein transduction domain, MYC polypeptide sequence, V5 epitope tag and/or 6-histidine tag of the fusion protein.
- the linker comprises one or more amino acids.
- the amino acid sequence of the linker comprises KGELNSKLE.
- the linker comprises the amino acid sequence of RTG.
- PTD Protein Transduction Domain
- the MYC fusion protein includes a protein transduction domain.
- Peptide transport provides an alternative for delivery of small molecules, proteins, or nucleic acids across the cell membrane to an intracellular compartment of a cell.
- Peptide transduction domain is a TAT-derived peptide. Frankel et al. (see, e.g., U.S. Pat. No.5,804,604, U.S. Pat. No.5,747,641, U.S. Pat. No.5,674,980, U.S. Pat. No.5,670,617, and U.S. Pat.
- TAT comprises an amino acid sequence of MRKKRRQRRR (SEQ ID NO: 7).
- PTD penetratin
- Penetratin can transport hydrophilic macromolecules across the cell membrane (Derossi et al., Trends Cell Biol., 8:84–87 (1998) incorporated herein by reference in its entirety).
- Penetratin is a 16 amino acid peptide that corresponds to amino acids 43–58 of the homeodomain of Antennapedia, a Drosophila transcription factor which is internalized by cells in culture.
- VP22 a tegument protein from Herpes simplex virus type 1 (HSV-1), has the ability to transport proteins and nucleic acids across a cell membrane (Elliot et al., Cell 88:223–233, 1997, incorporated herein by reference in its entirety). Residues 267–300 of VP22 are necessary but cannot be sufficient for transport.
- the PTD-MYC fusion polypeptide includes a protein transduction domain.
- the protein transduction domain comprises the protein transduction domain of one or more of TAT, penetratin, VP22, vpr, EPTD, R9, R15, VP16, and Antennapedia. In some embodiments, the protein transduction domain comprises the protein transduction domain of one or more of TAT, penetratin, VP22, vpr, and EPTD. In some embodiments, the protein transduction domain comprises the protein transduction domain of at least one of TAT, penetratin, VP22, vpr, EPTD, R9, R15, VP16, and Antennapedia. In some
- the protein transduction domain comprises a synthetic protein transduction domain (e.g., polyarginine or PTD-5). In particular embodiments, the protein transduction domain comprises a TAT protein transduction domain. In some embodiments, the protein transduction domain is covalently linked to the MYC polypeptide. In some embodiments, the protein transduction domain is linked to the MYC polypeptide via a peptide bond. In some embodiments, the protein transduction domain is linked to the MYC polypeptide via a linker sequence. In some embodiments, the linker comprises a short amino acid sequence. By way of example, but not by way of limitation, in some embodiments, the linker sequence is 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids in length.
- the MYC fusion protein of the present technology can be arranged in any desired order.
- the MYC fusion protein can be arranged in order of a) the protein transduction domain linked in frame to the MYC polypeptide, b) the MYC polypeptide linked in frame to the V5 domain, and c) the V5 domain linked in frame to the 6- histidine epitope tag.
- the MYC fusion protein has an order of components of a) the MYC polypeptide linked in frame to the protein transduction domain, b) the protein transduction domain linked in frame to the V5 domain, and c) the V5 domain linked in frame to the 6-histidine epitope tag.
- one or more additional amino acid sequences or linkers can be included between each of the sequences.
- additional amino acids can be included at the start and/or end of the
- the protein transduction domain is a TAT protein transduction domain. In some embodiments, the protein transduction domain is TAT [48-57] . In some embodiments, the protein transduction domain is TAT[57-48].
- Protein Tag Domains In some embodiments, the MYC fusion protein comprises a protein tag domain that comprises one or more amino acid sequences that facilitate purification of the fusion protein. In some embodiments, the protein tag domain comprises one or more of a polyhistidine tag, and an epitope tag.
- exemplary tags include one or more of a V5, a histidine-tag (e.g., a 6-histidine tag), HA (hemagglutinin) tags, FLAG tag, CBP (calmodulin binding peptide), CYD (covalent yet dissociable NorpD peptide), Strepll, or HPC (heavy chain of protein C).
- a histidine-tag e.g., a 6-histidine tag
- HA hemagglutinin
- FLAG tag e.g., CBP (calmodulin binding peptide)
- CYD covalent yet dissociable NorpD peptide
- Strepll heavy chain of protein C
- the protein tag domain comprises about 10 to about 20 amino acids in length. In some embodiments, the protein tag domain comprises 2 amino acids to 40 amino acids in length, for example 6-20 amino acids in length. In some embodiments, the protein tag domain comprises 2 amino acids, 3 amino acids, 4 amino acids, 5 amino acids, 6 amino acids, 7 amino acids, 8 amino acids, 9 amino acids, 10 amino acids, 11 amino acids, 12 amino acids, 13 amino acids, 14 amino acids, 15 amino acids, 16 amino acids, 17 amino acids, 18 amino acids, 19 amino acids, 20 amino acids, 21 amino acids, 22 amino acids, 23 amino acids, 24 amino acids, 25 amino acids, 26 amino acids, 27 amino acids, 28 amino acids, 29 amino acids, 30 amino acids, 31 amino acids, 32 amino acids, 33 amino acids, 34 amino acids, 35 amino acids, 36 amino acids, 37 amino acids, 38 amino acids, 39 amino acids, or 40 amino acids.
- the histidine tag is a 6-histidine tag.
- the histidine tag comprises the sequence HHHHHH (SEQ ID NO:8).
- the fusion polypeptide disclosed herein comprises a V5 epitope tag.
- the V5 tag comprises the amino acid sequence of: GKPIPNPLLGLDST (SEQ ID NO:9).
- the V5 tag comprises the amino acid sequence of IPNPLLGLD (SEQ ID NO:10).
- the protein tags can be added to the fusion protein disclosed herein by any suitable method.
- a TAT-MYC polypeptide sequence is cloned into an expression vector encoding one or more protein tags, e.g., a polyHis-tag and/or a V5 tag.
- a polyhistidine tag and/or a V5 tag is added by PCR (i.e., the PCR primers comprise a polyhistidine sequence and/ or V5 sequence).
- Construction of PTD-MYC fusion polypeptides PTD-MYC fusion polypeptides (e.g., TAT-MYC fusion polypeptide) disclosed herein can be constructed by methods well known in the art.
- a nucleotide sequence encoding a TAT-MYC fusion polypeptide can be generated by PCR.
- a forward primer for a human MYC sequence comprises an in frame N-terminal 9-amino-acid sequence of the TAT protein transduction domain (e.g., RKKRRQRRR).
- a reverse primer for a human MYC sequence is designed to remove the stop codon.
- the PCR product is cloned into any suitable expression vector.
- the expression vector comprises a polyhistidine tag and a V5 tag.
- a fusion polypeptide disclosed herein comprises (a) TAT, and (b) c-MYC. In some embodiments, a fusion polypeptide disclosed herein comprises (a) TAT[48-57], and (b) c-MYC. In some embodiments, a fusion polypeptide disclosed herein comprises (a) TAT [57-48] , and (b) c-MYC. In some embodiments, a fusion polypeptide disclosed herein comprises (a) TAT, (b) c-MYC, (c) linker(s), (d) V5 tag, and (e) 6-histidine tag.
- a fusion polypeptide disclosed herein comprises (a) TAT[48-57], (b) c-MYC, (c) linker(s), (d) V5 tag, and (e) 6-histidine tag.
- a fusion polypeptide disclosed herein comprises (a) TAT[57-48], (b) c-MYC, (c) linker(s), (d) V5 tag, and (e) 6-histidine tag.
- the PTD-MYC fusion polypeptide comprises SEQ ID NO: 1; in some embodiments, the PTD-MYC fusion polypeptide is SEQ ID NO: 1.
- the fusion protein can be modified during or after synthesis to include one or more functional groups.
- the protein can be modified to include one or more of an acetyl, phosphate, acetate, amide, alkyl, and/or methyl group. This list is not intended to be exhaustive, and is exemplary only. In some
- the protein includes at least one acetyl group.
- a PTD-MYC fusion polypeptide can be generated by any suitable method known the art, e.g. by recombinant protein expression in a cell, such as a bacterial cell, an insect cell, or mammalian cell.
- a PTD-MYC fusion polypeptide is recombinantly produced by microbial fermentation.
- microbial fermentation is performed in a fermentation volume of from about 1 to about 10,000 liters, for example, a fermentation volume of about 10 to about 1000 liters.
- the fermentation can utilize any suitable microbial host cell and culture medium.
- E. coli is utilized as the microbial host cell.
- microorganisms can be used, e.g., S. cerevisiae, P. pastoris, Lactobacilli, Bacilli and Aspergilli.
- the microbial host cell is BL-21 Star TM E. coli strain (Invitrogen).
- the microbial host cell is BLR DE3 E. coli. strain.
- the host cells are modified to provide tRNAs for rare codons, which are employed to overcome host microbial cell codon bias to improve translation of the expressed proteins.
- the host cells e.g., E.
- plasmid such as pRARE (CamR), which express tRNAs for AGG, AGA, AUA, CUA, CCC, GGA codons.
- pRARE CamR
- Additional, suitable plasmids or constructs for providing tRNAs for particular codons are known in the art and can be employed in the methods provided.
- Integrative or self-replicative vectors can be used for the purpose of introducing the PTD-MYC fusion polypeptide expression cassette into a host cell of choice.
- the coding sequence for the PTD-MYC fusion polypeptide is operably linked to promoter, such as an inducible promoter.
- Inducible promoters are promoters that initiate increased levels of transcription from DNA under their control in response to some change in culture conditions, e.g., the presence or absence of a nutrient or a change in temperature.
- the nucleic acid encoding the PTD-MYC fusion polypeptide is codon optimized for bacterial expression.
- Exemplary promoters that are recognized by a variety of potential host cells are well known. These promoters can be operably linked to PTD-MYC fusion polypeptide- encoding DNA by removing the promoter from the source DNA, if present, by restriction enzyme digestion and inserting the isolated promoter sequence into the vector.
- Promoters suitable for use with microbial hosts include, but are not limited to, the b-lactamase and lactose promoter systems (Chang et al. (1978) Nature, 275:617-624; Goeddel et al. (1979) Nature, 281: 544), alkaline phosphatase, a tryptophan (trp) promoter system (Goeddel (1980) Nucleic Acids Res.8: 4057; EP 36,776), and hybrid promoters such as the tac promoter (deBoer et al. (1983) Proc. Natl. Acad. Sci. USA 80: 21-25). Any promoter for suitable for expression by the selected host cell can be used.
- promoters for use in bacterial systems can contain a Shine-Dalgarno (S.D.) sequence operably linked to the coding sequence.
- the inducible promoter is the lacZ promoter, which is induced with Isopropyl b-D-1-thiogalactopyranoside (IPTG), as is well-known in the art.
- Promoters and expression cassettes can also be synthesized de novo using well known techniques for synthesizing DNA sequences of interest.
- the expression vector for expression of the PTD-MYC fusion polypeptides herein is pET101/D- Topo (Invitrogen).
- the microbial host containing the expression vector encoding the PTD-MYC fusion polypeptide is typically grown to high density in a fermentation reactor.
- the reactor has controlled feeds for glucose.
- a fermenter inoculum is first cultured in medium supplemented with antibiotics (e.g., overnight culture).
- the fermenter inoculum is then used to inoculate the fermenter culture for expression of the protein.
- an OD600 of at least about 15, usually at least about 20, at least 25, at least about 30 or higher, of the fermenter culture expression of the recombinant protein is induced.
- the inducible promoter is the lacZ promoter
- IPTG is added to the fermentation medium to induce expression of the PTD-MYC fusion polypeptide.
- the IPTG is added to the fermenter culture at an OD600 which represents logarithmic growth phase.
- induced protein expression is maintained for around about 2 to around about 5 hours post induction, and can be from around about 2 to around about 3 hours post-induction.
- the temperature of the reaction mixture during induction is preferably from about 28°C to about 37°C, usually from about 30°C to about 37°C. In particular embodiments, induction is at about 37°C.
- the PTD-MYC fusion polypeptide is typically expressed as cytosolic inclusion bodies in microbial cells. To harvest inclusion bodies, a cell pellet is collected by
- the cells are lysed by conventional methods, e.g., sonication, homogenization, etc.
- the lysate is then resuspended in solubilization buffer, usually in the presence of urea at a concentration effective to solubilize proteins, e.g., from around about 5M, 6M, 7M, 8M, 9M or greater.
- Resuspension can require mechanically breaking apart the pellet and stirring to achieve homogeneity.
- the cell pellet is directly resuspended in urea buffer and mixed until homogenous.
- the resuspension/solubilization buffer is 8M Urea, 50 mM Phosphate pH 7.5 and the suspension is passed through a homogenizer.
- the homogenized suspension is sulfonylated.
- the homogenized suspension is adjusted to include 200 mM Sodium Sulfite and 10 mM Sodium Tetrathionate.
- the solution is then mixed at room temperature until homogeneous.
- the mixed lysate is then mixed for an additional period of time to complete the sulfonylation (e.g., at 2-8°C for 3 12 hours).
- the sulfonylated lysate was then centrifuged for an hour.
- the supernatant containing the sulfonylated PTD-MYC fusion polypeptides is then collected by centrifugation and the cell pellet discarded.
- the supernatant is then passed through a filter, e.g., 0.22 mm membrane filter to clarify the lysate.
- the solubilized protein is then purified.
- Purification methods can include affinity chromatography, reverse phase chromatography, gel exclusion chromatography, and the like.
- affinity chromatography is used.
- the protein is provided with an epitope tag or histidine 6 tag for convenient purification.
- exemplary PTD-MYC fusion polypeptide comprise histidine 6 tag for purification using Ni affinity chromatography using Ni- resin.
- the Ni- resin column is equilibrated in a buffer containing urea.
- the equilibration buffer is 6M Urea, 50 mM
- Phosphate, 500 mM NaCl, and 10% Glycerol solution The sulfonylated and clarified supernatant comprising the PTD-MYC fusion polypeptide is then loaded onto the Ni- resin column.
- the column is then washed with a wash buffer, e.g., 6M Urea, 50mM Phosphate, 10% Glycerol, 500 mM NaCl, pH 7.5.
- the column was then washed with sequential wash buffers with decreasing salt concentration.
- exemplary subsequent washed can include 6M Urea, 50mM Phosphate, 10% Glycerol, and 2M NaCl, pH 7.5, followed another wash of 6M Urea, 50mM Phosphate, 10% Glycerol, 50mM NaCl, and 30mM Imidazole, pH 7.5.
- the PTD-MYC fusion polypeptide is eluted from the column by addition of elution buffer, e.g., 6M Urea, 50mM Phosphate, 10% Glycerol, and 50mM NaCl, pH 7.5 with a gradient from 100 to 300 mM Imidazole, and collecting fractions.
- the protein containing fractions to be pooled are then filtered through a 0.22 mm membrane.
- Assessment of protein yield can be measured using any suitable method, e.g., spectrophotometry at UV wavelength 280.
- one or more additional purification methods can be employed to further purify the isolated PTD-MYC fusion polypeptides.
- the pooled fractions from the Ni-Sepharose chromatography step are further purified by anion exchange chromatography using a Q-Sepharose resin.
- the pool is prepared for loading onto the Q-Sepharose column by diluting the samples to the conductivity of the Q Sepharose buffer (17.52 +/-1 mS/cm) with the second wash buffer (e.g., 6M Urea, 50mM Phosphate, 10% Glycerol, 2M NaCl, pH 7.5) from the Ni Sepharose chromatography step.
- the diluted pool is then loaded onto the Q-Sepharose column, followed by two chase steps using a chase buffer (e.g., 6M Urea, 50mM Phosphate, 300mM NaCl, and 10% Glycerol), with further sequential applications of the chase buffer until the UV trace reaches baseline, indicating that the protein has eluted from the column.
- a chase buffer e.g., 6M Urea, 50mM Phosphate, 300mM NaCl, and 10% Glycerol
- the present disclosure is directed to methods for the cryopreservation of immune cells, where the method comprises (a) contacting a composition comprising one or more immune cells isolated from a donor subject with an effective amount of a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence, and cooling the immune cells to a temperature sufficient to freeze the composition.
- a MYC fusion polypeptide comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence, and cooling the immune cells to a temperature sufficient to freeze the composition.
- Exemplary MYC fusion polypeptides are provided herein.
- the protein transduction domain sequence is a TAT protein transduction domain sequence.
- the MYC fusion polypeptide comprises SEQ ID NO: 1.
- the immune cells are peripheral blood mononuclear cells (PBMCs). Accordingly, the present disclosure is also directed to methods for the PBMCs).
- cryopreservation of PBMCs where the method comprises (a) contacting a composition comprising one or more PBMCs isolated from a donor subject with an effective amount of a MYC fusion polypeptide, comprising (i) a protein transduction domain; (ii) a MYC polypeptide sequence, and cooling the PBMCs to a temperature sufficient to freeze the composition.
- the protein transduction domain sequence is a TAT protein transduction domain sequence.
- the MYC fusion polypeptide comprises SEQ ID NO: 1.
- a whole blood sample of about 30 mL to about 470 mL is isolated from a donor subject.
- the whole blood sample isolated from a donor subject is then immediately treated with an anticoagulant, such as EDTA (about 1.5 % w/v).
- an anticoagulant such as EDTA (about 1.5 % w/v).
- the isolated whole blood sample is then allowed to incubate for a period of time (e.g., about 1-24 hours) at about 20°C to allow the sample to separate the immune cells and/or PBMCs from other components of the whole blood sample (i.e., red blood cells, platelets, plasma, etc.).
- separation is carried out using a density-gradient solution (DGS).
- DGS density-gradient solution
- a SEPAX-100 cell processing system Biosafe America Inc., Houston, TX is employed.
- the separated cells can be washed one or more times during the cell separation process to remove residual blood components.
- the cells are washed using a 2.5% (w/v) HSA (Human Serum Albumin) solution in saline, and then resuspended in the same wash solution to provide a cell suspension.
- samples of the cell suspension can be taken prior to treatment with the PTD-MYC fusion polypeptide (negative controls).
- the remaining cells in the suspension can then be treated with the PTD-MYC fusion polypeptide, for example, at a concentration of about 0.5 ⁇ g/mL to about 500 ⁇ g/mL.
- treated and non-treated (negative controls) samples can then be incubated at room temperature for an appropriate time, for example, about 1 hour.
- the immune cells e.g., PBMCs
- the immune cells are contacted with an effective amount of a PTD-MYC fusion polypeptide for a period of time sufficient to be taken up by the cells prior to freezing.
- the immune cells are contacted with an effective amount of a PTD-MYC for less than about 24 hours, less than about 23 hours, less than about 22 hours, less than about 21 hours, less than about 20 hours, less than about 19 hours, less than about 18 hours, less than about 17 hours, less than about 16 hours, less than about 15 hours, less than about 14 hours, less than about 13 hours, less than about 12 hours, less than about 11 hours, less than about 10 hours, less than about 9 hours, less than about 8 hours, less than about 7 hours, less than about 6 hours, less than about 5 hours, less than about 4 hours, less than about 3 hours, less than about 2 hours, less than about 1 hour, less than about 45 minutes, less than about 30 minutes, less than about 15 minutes, or less than about 10 minutes.
- the immune cells are contacted with an effective amount of a PTD-MYC fusion polypeptide for about 1 hour.
- the immune cells e.g., PBMCs
- the immune cells are contacted with a PTD- MYC fusion polypeptide at a concentration of about 0.5 ⁇ g/mL to about 500 ⁇ g/mL.
- the cells are contacted with a PTD-MYC fusion polypeptide at a concentration of at least 0.5 ⁇ g/mL, at least 0.6 ⁇ g/mL, at least 0.7 ⁇ g/mL, at least 0.8 ⁇ g/mL, at least 0.9 ⁇ g/mL, at least 1 ⁇ g/mL, at least 2 ⁇ g/mL, at least 3 ⁇ g/mL, at least 4 ⁇ g/mL, at least 5 ⁇ g/mL, at least 6 ⁇ g/mL, at least 7 ⁇ g/mL, at least 8 ⁇ g/mL, at least 9 ⁇ g/mL, at least 10 ⁇ g/mL, at least 15 ⁇ g/mL, at least 20 ⁇ g/mL, at least 25 ⁇ g/mL, at least 30 ⁇ g/mL, at least 35 ⁇ g/mL, at least 40 ⁇ g/mL, at least 45 ⁇ g/mL, at least 50 ⁇ g/mL, at a concentration of at least 0.5 ⁇ g/mL, at least
- 180 ⁇ g/mL at least 190 ⁇ g/mL, at least 200 ⁇ g/mL, at least 220 ⁇ g/mL, at least 240 ⁇ g/mL, at least 260 ⁇ g/mL, at least 280 ⁇ g/mL, at least 300 ⁇ g/mL, at least 320 ⁇ g/mL, at least
- the treated immune cells and/or treated PBMCs can then be re-washed (e.g., on the SEPAX-100) one or more times, to remove excess PTD-MYC from the cells with a wash solution (e.g., a 2.5% (w/v) HSA solution).
- a wash solution e.g., a 2.5% (w/v) HSA solution
- the treated cells can be resuspended, for example, at a concentration of about 0.5x10 6 cells/mL to about 1x10 8 cells/mL.
- the treated cells can be resuspended at a concentration of about 0.5x10 6 cells/mL, about 0.6x10 6 cells/mL, about 0.7x10 6 cells/mL, about 0.8x10 6 cells/mL, about 0.9x10 6 cells/mL, about 1x10 6 cells/mL, about 1.1x10 6 cells/mL, about 1.2x10 6 cells/mL, about 1.3x10 6 cells/mL, about 1.4x10 6 cells/mL, about 1.5x10 6 cells/mL, about 1.6x10 6 cells/mL, about 1.7x10 6 cells/mL, about 1.8x10 6 cells/mL, about 1.9x10 6 cells/mL, about 2x10 6 cells/mL, about 2.2x10 6 cells/mL, about 2.4
- the treated cells can be centrifuged and resuspended, at a pre-determined concentration (cells/mL).
- the cells are resuspended in a suitable freezing medium.
- the cell suspension medium is selected from among CHB media, CS10 media, or CS5 media.
- CHB media is a cell suspension media which contains 50% (v/v) fetal bovine serum (FBS), 40% (v/v) RPMI cell culture media, and 10% (v/v) dimethyl sulfoxide (DMSO).
- CS10 media BioLife
- composition comprising the PTD-MYC treated cells can then be vialed and cryogenically frozen.
- the composition comprising the PTD-MYC treated cells can be cryogenically frozen by any method known in the art.
- composition comprising the PTD-MYC treated cells can be cryogenically frozen by a method that provides controlled cooling to the desired temperature.
- composition comprising the PTD-MYC treated immune cells are cooled using a controlled-rate cryogenic freezer.
- composition comprising the PTD-MYC treated immune cells e.g., PBMC
- the temperature sufficient to freeze the composition is about -80°C to about -190°C.
- the temperature sufficient to freeze the composition is about -80°C, about -82°C, about -84°C, about -86°C, about -88°C, about - 90°C, about -92°C, about -94°C, about -96°C, about -98°C, about -100°C, about -105°C, about -110°C, about -115°C, about -120°C, about -125°C, about -130°C, about -135°C, about -140°C, about -145°C, about -150°C, about -155°C, about -160°C, about -165°C, about - 170°C, about -175°C, about -180°C, about -185°C, about -190°C, or any integer value in between.
- the PTD-MYC treated cells are cryogenically frozen via loading into a CoolCell ® cell freezing container (BioCision), followed by incubation at - 80°C.
- the CoolCell ® provide a cooling rate of about -1°C per minute.
- the TBX-3400 and control cells are cryogenically frozen via loading into a VIA FreezeTM system (GE Healthcare Life Sciences, Pittsburgh, PA) with a cooling rate of -1°C per minute until the temperature reached -80°C. Following cryopreservation of the cell samples, the samples can be transferred to a liquid nitrogen freezer at -190°C, where the samples can be stored in the vapor phase of the liquid nitrogen.
- the one or more immune cells (e.g., PBMCs) isolated from a donor subject can be immediately treated with an anticoagulant following isolation.
- the one or more immune cells (e.g., PBMCs) isolated from a donor subject can be immediately treated with the PTD-MYC fusion polypeptide following isolation.
- the one or more immune cells isolated from a donor subject can be stored in a suitable buffer prior to treatment with the PTD-MYC fusion polypeptide.
- the one or more immune cells isolated from a donor subject can be immediately treated with the PTD-MYC fusion polypeptide following isolation and the treated cells are stored in a suitable buffer prior to freezing.
- the anticoagulant can be one or more of
- the one or more peripheral blood mononuclear cells can be a T-cell, a B-cell, an NK cell, a monocyte, a granulocyte, macrophage, or any combination thereof.
- the one or more immune cells isolated from a donor subject can include B cells, T cells, natural killer (NK) cells, myeloid cells, or any combination thereof.
- the one or more myeloid cells isolated from a donor subject can include monocytes, macrophages, dendritic cells, eosinophils, neutrophils, mast cells, basophils, granulocytes, or any combination thereof.
- the one or more B cells isolated from a donor subject can include a pre-B cell, a progenitor B cell, an early pro-B cell, a late pro-B cell, a large pre-B cell, a small pre-B cell, an immature B cell, a mature B cell, a na ⁇ ve B cell, a plasma B cell, an activated B cell, an anergic B cell, a tolerant B cell, a chimeric B cell, an antigen-specific B cell, a memory B cell, a B-1 cell, a B-2 cell, an anergic AN1/T3 cell population, or a combination of two or more thereof.
- the one or more T cells isolated from a donor subject can include na ⁇ ve T cells, CD4+ T cells, CD8+ T cells, memory T cells, activated T cells, anergic T cells, tolerant T cells, chimeric T cells, and antigen-specific T cells, regulatory T cells, or any combination thereof.
- the method further comprises thawing of the cryopreserved cells, such that the cells exhibit one or more of increased cell viability, increased cell recovery, or increased expression of CD25 after cell activation as compared to control PBMCs not contacted with an effective amount of the MYC fusion polypeptide.
- the immune cells after thawing of the cryopreserved cells the immune cells can be assessed for viability and or ability to be activated.
- lymphocytes can be assessed for activation by stimulation or activation by a single agent that induce immune cells activation.
- the immune cells after thawing of the cryopreserved cells the immune cells can be stimulated or activated with two agents, one that induces a primary signal and a second that is a co-stimulatory signal.
- Ligands useful for stimulating a single signal or stimulating a primary signal and an accessory molecule that stimulates a second signal can be used in soluble form.
- Ligands can be attached to the surface of a cell, to an Engineered Multivalent Signaling Platform (EMSP), or immobilized on a surface.
- EMP Engineered Multivalent Signaling Platform
- both primary and secondary agents are co-immobilized on a surface, for example a bead or a cell.
- the molecule providing the activation signal by a single agent can be a CD3 ligand.
- the molecule providing the primary activation signal can be a CD3 ligand
- the co-stimulatory molecule can be a CD28 ligand.
- the method further comprises thawing of the cryopreserved cells, such that the cells exhibit one or more of increased cell viability, increased cell recovery, cell activation, or increased expression of CD25 after cell activation as compared to control PBMCs not contacted with an effective amount of the MYC fusion polypeptide.
- the present disclosure is directed to methods for establishing immune cell banks. As demonstrated by Example 6 (Tables 2 and 3), PBMCs contacted by the MYC fusion polypeptides of present technology were successfully cryopreserved without loss of viability.
- Kits Kits can comprise a carrier means, such as a box, carton, tube, having in close confinement therein one or more containers, such as vials, tubes, ampoules, bottles, syringes, or bags.
- the kits can also comprise associated instructions for using the MYC-fusion polypeptides, MYC-fusion polypeptide-modified immune cells, and/or the frozen composition of the present technology.
- the kit comprises an effective amount of an adoptive cell therapy, such as MYC-fusion polypeptide-modified immune cells.
- the kit comprises one for more reagents for the detection of the administered MYC-fusion polypeptides and/or MYC-fusion polypeptide- modified immune cells.
- EXAMPLES The present technology is further illustrated by the following Examples, which should not be construed as limiting in any way. The examples herein are provided to illustrate advantages of the present technology and to further assist a person of ordinary skill in the art with preparing or using the compositions and systems of the present technology. The examples should in no way be construed as limiting the scope of the present technology, as defined by the appended claims. The examples can include or incorporate any of the variations, aspects, or embodiments of the present technology described above.
- Example 1 Materials and Methods Activation of Peripheral Blood Mononuclear Cells (PBMCs).
- PBMCs Peripheral Blood Mononuclear Cells
- a 24-well plate was coated with a solution of an anti-CD3e antibody (500 ⁇ L, 5 ⁇ g/mL; BD Biosciences) in sterile DPBS.
- an anti-CD3e antibody 500 ⁇ L, 5 ⁇ g/mL; BD Biosciences
- DPBS sterile DPBS
- the plates were allowed to incubated overnight at 4°C prior to removing the solutions. Each well was then washed twice with 2 mL of sterile DPBS.
- a whole blood sample (450-470 mL) was isolated from a human donor subject and mixed with the blood anticoagulant, ethylenediaminetetraacetic acid (EDTA, about 1.5 % w/v), After allowing the cells to incubate at least 24 hours at about 20°C, the whole blood sample is then separated into peripheral blood mononuclear cells (PBMCs) and waste (i.e., red blood cells, platelets, plasma, etc.) using a density-gradient solution (DGS) on a SEPAX-100 cell processing system (Biosafe America Inc., Houston, TX).
- PBMCs peripheral blood mononuclear cells
- waste i.e., red blood cells, platelets, plasma, etc.
- DGS density-gradient solution
- the PBMCs were washed two times during the cell separation process with a 2.5% (w/v) HSA (Human Serum Albumin) solution in saline. Following the wash steps, the PBMCs were resuspended in the 2.5% (w/v) HSA solution at a concentration of 13.6x10 6 cells/mL to provide a cell suspension. Following the cell separation process, samples of the PBMCs were taken from the cell suspension prior to treatment (negative control), and the remaining cells in the cell suspension were treated with TAT-MYC fusion protein (25 ⁇ g/mL) and incubated at room temperature for 1 hour.
- HSA Human Serum Albumin
- the treated PBMCs (called TBX-3400) were then re-washed on the SEPAX-100, and excess TAT-MYC is washed off of the cells with the 2.5% (w/v) HSA solution.
- the TBX-3400 were resuspended in in the 2.5% (w/v) HSA solution at a concentration of 2.7x10 6 cells/mL.
- the control PBMCs and the TBX-3400 were centrifuged and resuspended, at a pre-determined concentration (cells/mL), in one of three cell suspension mediums: CHB media, CS10 media, or CS5 media.
- CHB media is a cell suspension media which contains 50% (v/v) fetal bovine serum (FBS), 40% (v/v) RPMI cell culture media, and 10% (v/v) dimethyl sulfoxide (DMSO).
- FBS fetal bovine serum
- RPMI cell culture media
- DMSO dimethyl sulfoxide
- CS10 media BioLife Solutions, Inc.
- CS5 media BioLife Solutions, Inc.
- CS5 media is a cell culture media comprising 5% (v/v) DMSO and is essentially free of animal components or serum.
- the resuspended TBX-3400 and control PBMCs were then vialed and cryogenically frozen via one of two methods.
- cryogenic vials containing the control PBMCs or TBX-3400
- a CoolCell ® cell freezing container BioCision
- the samples were incubated for 24 hours in the CoolCell ® cell freezing containers at -80°C (which provided a cooling rate of - 1°C/min).
- the samples were then stored in the vapor phase of a liquid nitrogen freezer at -190°C.
- cryogenic vials containing the control PBMCs or TBX-3400
- VIA FreezeTM system GE Healthcare Life Sciences, Pittsburgh, PA
- CHB media, CS10 media, and/or CS5 media were suspended in each of the three media (CHB media, CS10 media, and/or CS5 media) and then split into separate samples to be frozen via the CoolCell ® cell freezing container or the VIA FreezeTM system.
- Example 3 Improved Cell Viability and Cell Recovery After Thawing Cryopreserved PBMCs Treated with TAT-MYC
- the cell viability and recovery of control PBMCs and the TBX- 3400 were determined by flow cytometry. Briefly, cell counts were performed before cryopreservation and after thawing the cryopreserved cells. Briefly, frozen and/or cryopreserved cells were quickly thawed in a water bath (37°C) or a Via Thaw system (GE Healthcare Life Sciences).
- the thawed cell suspension was then transferred into a 50 mL conical tube, and the cell suspension was diluted drop-wise with cRPMI (for osmotic balancing), then diluted slowly up to about 10 mL to about 30 mL with cRPMI.
- the cell suspension was then centrifuged at 160-400 RCF for 10 minutes at 20°C, and resuspended in 10 mL of cRPMI. Cells were then incubated at 37°C, 5% CO2 overnight. To determine cell viability, a sample of the cell suspension containing 1x10 6 cells/mL was transferred to a microcentrifuge tube and pelleted at 2,000 rpm for 5 minutes.
- FIG. 1 demonstrates that the TBX-3400 exhibits a significant increase in cell viability post- cryopreservation following treatment with the PTD-MYC fusion polypeptide.
- cell counts were performed with a hemocytometer. Briefly, a sample of the cell suspension containing 1x10 6 cells/mL was lysed with RBC lysis buffer and allowed to incubate at room temperature.
- FIG.2 illustrates that the TBX-3400 which were cryopreserved in the CS5 cell suspension medium and frozen using the CoolCell ® cell freezing container exhibit about a 95% recovery of viable cells, while TBX-3400 cryopreserved in CHB or CS5 cell suspension mediums demonstrated about 45% and 40% recovery, respectively. Accordingly, these results demonstrate that the compositions and methods disclosed herein exhibit increased cell viability and/or increased cell recovery as compared to control PBMCs not contacted with an effective amount of the MYC fusion polypeptide.
- Example 4 Determination of Cell Populations of Isolated PBMCs after Treatment with TAT-MYC
- PBMCs peripheral blood mononuclear cells
- a cell suspension containing at least 3x10 6 cells/mL was centrifuged for 5 min at 1,600 rpm to pellet the cells.
- the cells were then washed 1x with DPBS and resuspended at a concentration of 1x10 6 cells/mL.
- 1 ⁇ L/mL of freshly prepared LIVE/DEAD Fixable Near-IR Dead Cell Dye was added to the cell suspension.
- the dye was prepared by adding 50 ⁇ L of DMSO to one vial of LIVE/DEAD Fixable Near-IR Dead Cell Dye (ThermoFisher Scientific, Waltham, MA). The cells were then incubated in the dark at room temperature for about 30 minutes. Following 1x wash with DPBS, the cells were resuspended to a final concentration of 1x10 6 cells/mL in 1% BSA or DPBS. Further, the cell suspension was transferred to three staining tubes and stained with the appropriate antibodies as indicated in Table 1. The staining tubes were then allowed to incubate in the dark for 20 minutes at room temperature.
- Example 5 Improved Cell Activation After Thawing Cryopreserved Immune Cells and/or PBMCs Treated with TAT-MYC
- the cell activation of control PBMCs and the TBX-3400 were determined by flow cytometry with either one activation agent or two co-activating agents. Briefly, following the thawing of cryopreserved control PBMCs or TBX-3400 cells, the cells were suspended in cRPMI at a concentration of 2x10 6 cells/mL, and 1 mL of the cell suspension was added to a 24 well plate coated with an anti-CD3 antibody.
- a CD28 antibody (20 ⁇ g/mL) in cRPMI were added to the designated wells, followed by incubation at 37°C, 5% CO 2 for 72 hours. Following incubation, the samples were mixed thoroughly and stained with a CD25-FITC antibody. Following incubation, the samples were transferred to a FACS tube and analyzed via flow cytometry to determine the cell activation with CD3 alone, or in combination with CD28 (FIG.4). Further, the fraction of CD25 positive cells was determined after cell activation of control PBMCs and the TBX-3400 by flow cytometry with either one activation agent or two co-activating agents.
- FIG.5 illustrates the fraction of CD25 positive cells as determined by flow cytometry after cell activation of control PBMCs and the TBX-3400 which have been previously cryogenically frozen and subsequently thawed. Accordingly, these results demonstrate that the compositions and methods disclosed herein exhibit increased cell activation and/or increased expression of CD25 after cell activation as compared to control PBMCs not contacted with an effective amount of the MYC fusion polypeptide.
- Example 6 Stability of PBMCs Treated with TAT-MYC In this example, the stability of TBX-3400 was determined by flow cytometry.
- Total nucleated cell (TNC) counts and viability were measured pre-freeze/pre- cryopreservation and post-thaw for five different PBMC batches stored at either £ -70°C or £ -150°C for storage times ranging from 24 hours (24h) to 42 days (42d). Briefly, frozen and/or cryopreserved cells were quickly thawed in a water bath (37°C) or a Via Thaw system (GE Healthcare Life Sciences). The thawed cell suspension was then transferred into a 50 mL conical tube, and the cell suspension was diluted drop-wise with cRPMI (for osmotic balancing), then diluted slowly up to about 10 mL to about 30 mL with cRPMI.
- cRPMI for osmotic balancing
- the cell suspension was then centrifuged at 160-400 RCF for 10 minutes at 20°C, and resuspended in 10 mL of cRPMI. Cells were then incubated at 37°C, 5% CO 2 overnight. To determine cell viability, a sample of the cell suspension containing 1x10 6 cells/mL was transferred to a microcentrifuge tube and pelleted at 2,000 rpm for 5 minutes. The cell pellet was then resuspended in DPBS and 5 ⁇ L of 7-aminoactinomycin D (7-AAD) were added. Following a 10 minute incubation in the dark at room temperature, the samples were analyzed via flow cytometry to determine the cell viability after cryopreservation.
- 7-aminoactinomycin D (7-AAD 7-aminoactinomycin D
- compositions disclosed herein are useful in methods for long-term storage of immune cells and in methods for immune cell banking.
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| Application Number | Priority Date | Filing Date | Title |
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| CN202080036965.XA CN113874033A (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for cryopreservation of immune cells |
| KR1020217033547A KR20210149746A (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for cryopreservation of immune cells |
| JP2021559399A JP2022527117A (en) | 2019-04-08 | 2020-04-07 | Compositions and Methods for Cryopreservation of Immune Cells |
| AU2020272664A AU2020272664A1 (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for the cry opreservation of immune cells |
| SG11202111081XA SG11202111081XA (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for the cryopreservation of immune cells |
| US17/602,207 US12250943B2 (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for the cryopreservation of immune cells |
| EP20788310.9A EP3952909A4 (en) | 2019-04-08 | 2020-04-07 | COMPOSITIONS AND METHODS FOR CRYOPRESERVATION OF IMMUNE CELLS |
| CA3132857A CA3132857A1 (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for the cryopreservation of immune cells |
| IL287010A IL287010A (en) | 2019-04-08 | 2021-10-05 | Preparations and methods for cryogenic freezing of immune cells |
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| PCT/US2020/027070 Ceased WO2020210231A1 (en) | 2019-04-08 | 2020-04-07 | Compositions and methods for the cry opreservation of immune cells |
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| EP (1) | EP3952909A4 (en) |
| JP (1) | JP2022527117A (en) |
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| CN (1) | CN113874033A (en) |
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| SG (1) | SG11202111081XA (en) |
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| WO2022192448A1 (en) * | 2021-03-10 | 2022-09-15 | Terasaki Institute For Biomedical Innovation | Antimicrobial systems and methods thereof |
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| CN116889226A (en) * | 2022-04-02 | 2023-10-17 | 杭州启函生物科技有限公司 | NK cell cryopreservation solution |
| KR102753352B1 (en) * | 2023-04-13 | 2025-01-10 | 경상국립대학교산학협력단 | Composition for cryopreservation preatretment of stem cell and method for cryopreservation using the same |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2022192448A1 (en) * | 2021-03-10 | 2022-09-15 | Terasaki Institute For Biomedical Innovation | Antimicrobial systems and methods thereof |
Also Published As
| Publication number | Publication date |
|---|---|
| IL287010A (en) | 2021-12-01 |
| SG11202111081XA (en) | 2021-11-29 |
| JP2022527117A (en) | 2022-05-30 |
| US20220142149A1 (en) | 2022-05-12 |
| CN113874033A (en) | 2021-12-31 |
| US12250943B2 (en) | 2025-03-18 |
| CA3132857A1 (en) | 2020-10-15 |
| KR20210149746A (en) | 2021-12-09 |
| EP3952909A1 (en) | 2022-02-16 |
| EP3952909A4 (en) | 2023-06-07 |
| AU2020272664A1 (en) | 2021-11-04 |
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