WO2022074456A1 - Poly-3-hydroxyalkanoates having vinyl moieties and method of producing such - Google Patents
Poly-3-hydroxyalkanoates having vinyl moieties and method of producing such Download PDFInfo
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- C08G63/00—Macromolecular compounds obtained by reactions forming a carboxylic ester link in the main chain of the macromolecule
- C08G63/02—Polyesters derived from hydroxycarboxylic acids or from polycarboxylic acids and polyhydroxy compounds
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- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
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- C12Y103/08—Oxidoreductases acting on the CH-CH group of donors (1.3) with flavin as acceptor (1.3.8)
- C12Y103/08007—Medium-chain acyl-CoA dehydrogenase (1.3.8.7)
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- C12Y402/01—Hydro-lyases (4.2.1)
- C12Y402/01119—Enoyl-CoA hydratase 2 (4.2.1.119)
Definitions
- the present invention relates to biopolymers and their production.
- the invention relates to short-chain-length and short-chain-length-medium- chain-length poly-3-hydroxyalkanoates and their microbial production.
- PHAs Poly-3-hydroxyalkanoates
- scl short-chain- length
- PHAs have been shown to have biomedical applications as they degrade slowly in animal tissues releasing relatively little acidity or toxic metabolites. Many of these applications require or are enhanced by slow release of bioactive compounds that have been doped into the PHA (Zhang et al. 2018).
- a scl-mcl PHA copolymer has been used to form PHA nanoparticles for the treatment of systemic lupus erythematosus in mice with reduced side effects (Hu et al. 2020).
- Another area of potential application is in wound healing, where slow release of therapeutics is required. Giourieva et al. 2019 reports on such a study where doping of the PHA was employed.
- cepacia IPT64 has been shown to accumulate scl-PHA with unsaturated scl subunits (3-hydroxy-4-pentenoate) from unrelated carbon sources but produced more scl-PHA when fed 4-pentenoic acid (de Andrade Rodrigues et al. 2000).
- Rhodospirillum rubrum has also been shown to accumulate 3-hydroxy-4-pentenoate subunits in a scl-PHA copolymer with 3-hydroxybutyric acid and 3-hydroxypentanoic acid when fed 4-pentenoic acid (Ulmer et al. 1994, Ballistreri et al. 1995, Bear et al. 1997).
- the strain of CN 109266597 A is capable of accumulating only a small percentage of the cell dry weight (CDW) in PHA (e.g. 11 .3 % PHA of CDW), which may be a great disadvantage for large scale production.
- CDW cell dry weight
- the strain of CN 109266597 A is not native with respect to the phaC gene, which encodes PHA synthase.
- Cupriavidus necator formerly known by many different names including Alcaligenes eutrophus, is the best-known producer of poly-3-hydroxyalkanoates (PHAs). It was believed to only be able to synthesize homopolymers of 3-hydroxybutyric acid until methods were found to produce poly-3-hydroxybutyric-hydroxyvaleric (P(HB-HV)) copolymers (Ramsay et al. 1990). Cupriavidus necator was chosen for the original ICI P(HB-HV) production process because of its high yield and rapid production rate. (P. A. Holmes, S. H. Collins, and W. F. Wright, European patent 69,497, April 1987).
- the final step in PHA synthesis is the polymerization step, catalyzed by the enzyme, PHA synthase (PhaC).
- PHA synthase PHA synthase
- the crude C. necator synthase was believed to accept substrates no larger than C5 (Haywood et al., 1989) until several years later when it was determined that the necator synthase could incorporate some 3- hydroxyhexanoate (3HHx) (Dennis et al. 1998). Then, by cloning a phaC into [3- oxidation impaired E.
- Cupriavidus necator PHA synthase specificity is restricted to smaller molecular weight substrates.
- Mezzolla et al. 2018 states that “The grouping of phaC enzymes into four classes is dependent on substrate specificity, according to the preference in forming short-chain- length (scl) or medium-chain-length (mcl) polymers: Class I, Class III and Class IV produce scl-PHAs depending on propionate, butyrate, valerate and hexanoate precursors”.
- the Cupriavidus necator PHA synthase is a Class I synthase.
- PHAs comprising terminal alkene moieties on the side chains are only accumulated by mcl-PHA producers, such as P. putida.
- Mezzolla et al. 2018 states that “There also exist PHAs with unsaturated monomers (3-hydroxyalkenoates), produced by Pseudomonas sp. possessing Class II PHA polymerizing enzymes”. While there has been one report of a Class I synthase polymerizing small amounts of 3-hydroxy-4-pentenoate (i.e. a scl-PHA) (de Andrade Rodrigues et al. 2000), production of scl-mcl-PHA copolymers (wherein the mcl subunits comprise vinyl groups) using the Cupriavidus necator PHA synthase has never been reported.
- the present disclosure provides for novel PHAs and methods of producing such.
- the inventors have surprisingly found that the native PHA synthase of C. necator is capable of polymerising both scl and mcl subunits to form a copolymer.
- the present inventors have further found that successful biosynthesis of the disclosed PHAs rely on incorporation of a phaJ gene encoding a broad-specificity (R)-specific enoyl-CoA hydratase.
- One aspect of the disclosure provides for a polyester copolymer comprising: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- One aspect of the disclosure provides for a polyester copolymer comprising: a. 85.0 - 99.0 mol% of one or more saturated short-chain-length hydroxyalkanoate subunit, and b. 0.5 - 5 mol% of one or more medium-chain-length 3-hydroxyalkenoate subunits,
- medium-chain-length 3-hydroxyalkenoate subunits contains a terminalO alkene moieties in the side chain.
- One aspect of the present disclosure provides for a cell capable of producing the polyester copolymers of the present disclosure, said cell comprising: a. a phaC gene encoding a class I poly(3-hydroxyalkanoate) polymerase having at least 90 % sequence identity to SEQ ID NO: 1 , and b. a phaJ gene encoding an (R)-specific enoyl-CoA hydratase having at least 90 % sequence identity to SEQ ID NO: 2.
- a final aspect of the disclosure provides for a method of producing a polyester copolymer as disclosed herein, said method comprising the steps of: a. providing a cell according to the disclosure, and b. cultivating said cell in a growth medium comprising an alkenoic acid, thereby obtaining the polyester copolymer.
- the cells as disclosed herein provide a high yield of polyester product as expressed by the percentage polyester copolymer of cell-dry-weight (CDW) of the polyester copolymer.
- the vinyl moieties of the mcl subunits can be advantageous for further functionalization of the polyester copolymers of the disclosure.
- the copolymers of the present disclosure comprise 0.1 - 20.0 mol% subunits having terminal vinyl groups on the side chains
- the polyester copolymers of the present disclosure are particularly useful for production of functionalized PHAs wherein a functionalization degree of at least 0.1 is required.
- FIG. 4 illustrates a pK18 plasmid and pBTB-3 pRanger.
- FIG. 5 illustrates a GS4560-1 pBSK gene 1 (fadE E. coli) plasmid and GS4560-2 pBSK gene 2 (phaJ P. putida) plasmid.
- FIG. 6 illustrates a pMPJASOI plasmid and pMPJAS02 plasmid.
- FIG. 7 illustrates a pMPJAS03 plasmid.
- FIG. 8 depicts flowchart of the process to prepare scl/mcl PHA.
- (R)-3- scl-hydroxyacyl-CoA is accepted by the C. necator phaC gene product (PHA synthase) but the wild type phaJ product cannot supply sufficient (R)-3-mcl-hydroxyacyl-CoA.
- By replacing the wild type phaJ with one able to supply (R)-3-mcl-hydroxyacyl-CoA allows production of scl-mcl PHA. If the mcl-hydroxyacyl-CoA supplied has a vinyl group, the vinyl group will be incorporated into the growing polymer at the end of a side-chain.
- PHA polyhydroxyalkanoate, in particular poly-3-hydroxyalkanoate. They may be either homopolymers or copolymers.
- Cupriavidus necator has previously also been called Ralstonia eutropha as well as other names.
- the present invention relates to the bacterial species now termed Cupriavidus necator.
- subunit refers to the discrete repeating molecular moiety constituting a polymer backbone.
- the subunits may be identified by referring to the non-polymerised monomeric unit from which the polymer was produced.
- the subunits of a PHA may be referred to as 3-hydroxyalkanoate subunits or 3-hydroxyalkanoic acid subunits.
- mol% in connection with the content of a subunit in a PHA refers to the amount of said subunit compared to the total amount of subunits in the PHA.
- a PHA wherein 1 in every 10 subunits is of the type A would be considered to comprise 10 mol% of A.
- short chain length hydroxyalkanoate subunit refers to hydroxy-alkanoate subunits having between 3 and 5 carbon atoms. Specific examples are 3-hydroxypropanoate subunits, 3-hydroxybutanoate subunits, and 3- hydroxypentanoic subunits. That is, scl-subunits in a PHA polymer will have no sidechain, or a sidechain being 1 or 2 carbon atoms long, scl 3-hydroxyalkanoate subunits have the structure of formula (I): formula (I)
- R is H, methyl, or ethyl
- dotted lines indicate attachment point to other subunits of the PHA.
- scl-hydroxyalkenoate subunit refers to a subunit having 5 carbon atoms and one carbon-carbon double bond between carbon atoms of the side chain.
- An example of a scl-hydroxyalkenoate subunit is a subunit based on 3- hydroxypentenoate, i.e. a subunit having formula (II): formula (II)
- the term “medium chain length” hydroxyalkanoate subunit refer to hydroxy-alkanoate subunits having between 6 and 14 carbon atoms.
- the term refers to 3-hydroxyalkanoate subunits having the structure of formula (III): formula (III)
- R is an alkyl group having 2 to 10 carbon atoms, and the dotted lines indicate attachment point to other subunits of the PHA.
- the alkyl group is a linear alkyl group.
- mcl-hydroxyalkenoate subunit refers to a hydroxyalkenoate subunit having between 6 and 15 carbon atoms and at least one terminal carbon-carbon double bond between carbon atoms of the side chain.
- An example of a mcl- hydroxyalkenoate subunit is a subunit based on 3-hydroxyhept-6-enoate. i.e. a subunit having formula (IV): formula (IV)
- the side chain of the subunit may be branched or linear, but it is preferably linear. While the side chain may comprise multiple terminal double bonds, the side chain preferably comprise exactly one terminal double bond.
- phrases such as “X comprises in the range of n to m of Y” as used herein refer to that X contains at least n and at the most m of Y. I.e. the term indicates that X does not contain more than m of Y.
- a polyester material is stated to comprise in the range of 0.5 to 5.0 % mcl PHA, then said polyester material does not contain more than 5.0 % mcl PHA.
- PHA synthase and poly(3-hydroxyalkanoate) polymerase are using interchangeably herein.
- X % of Y in cell dry weight is taken to mean that dry biomass obtained from the cells of the disclosure comprise by weight X % of Y.
- type and class are synonymous for the discussion of PHA synthases, for example, a type I PHA synthase is synonymous to a class I PHA synthase.
- polyester copolymers in particular, poly-3-hydroxyalkanoates.
- PHA polymers are thermoplastics and can be processed by conventional processing equipment. Depending on the specific composition, they may be ductile and elastic or hard and brittle, allowing for a wide range of applications.
- One embodiment of the present disclosure provides for a polyester copolymer comprising: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- the physical-mechanical properties of a PHA depend on the specific PHA subunits, and thus on the specific side chains of said subunits. scl-PHAs tend to have high crystallinity, high melting temperatures, moderate glass transition temperatures compared to the mcl-PHA counterparts. scl-PHAs also tend to have comparatively high tensile strength and high Young’s modulus compared to mcl-PHAs.
- one embodiment of the present disclosure provides for a polyester copolymer comprising: a. 85.0 - 99.0 mol% of one or more saturated short-chain-length hydroxyalkanoate subunit, and b. 0.5 - 5 mol% of one or more medium-chain-length 3-hydroxyalkanoate subunits, wherein the medium-chain-length 3-hydroxyalkanoate subunits contains an alkene moiety in the side chain.
- the alkene moiety is a terminal alkene moiety.
- PHAs are typically based on either 3-hydroxyalkanoic acid or 4- hydroxyalkanoic acid subunits.
- the PHA synthase of the present disclosure preferably polymerises 3-hydroxyalkanoate subunits.
- the polyester copolymer comprises saturated short-chain-length polyhydroxyalkanoate subunits which are saturated short-chain-length 3- hydroxyalkanoate subunits.
- 3- hydroxybutyric acid is a scl-PHA subunit. Accordingly, in one embodiment of the present disclosure, the saturated short-chain-length 3-hydroxyalkanoate subunits is 3- hydroxybutyrate subunits.
- the polyester copolymer comprises 3-hydroxyhept-6-enoate subunits.
- the polyester copolymer comprises: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3-hydroxyhept-6-enoate subunits.
- the polyester copolymer comprises 3-hydroxynon-8-enoate subunits.
- the polyester copolymer comprises: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3-hydroxynon-8-enoate subunits.
- the polyester copolymer comprises: a. 60.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 40.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- the polyester copolymer comprises: a. 70.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 30.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- the polyester copolymer comprises: a. 80.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 20.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- the polyester copolymer comprises: a. 90.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 10.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- the PHAs of the present disclosure comprise alkene moieties which are useful for functionalising said PHA with other compounds.
- These compounds can be bioactive compounds, which may in turn be large or bulky.
- the bioactive compounds might exhibit reduced activity, if they are forced close to other moieties, or for instance if their substrate cannot properly access the bioactive compound. Accordingly, it is preferred that the PHA does not comprise too many sites which are suitable for ligation of bioactive compounds, i.e. terminal alkenes, because functionalisation of the PHA might then produce a bioactive material with suboptimal activity.
- the polyester copolymer comprises: a. 95.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 5.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- bioactive compositions comprising polymeric materials — so-called “bioactive polymers” — are rendered bioactive by doping (mixing) of the bioactive component with the polymeric material. This can lead to difficulties in controlling the rate of release of the bioactive component from the polymeric material. Instead, covalently linking the bioactive component to the polymeric material may provide for more stable compositions, and the rate of release of the bioactive component may be better controlled by, for example, cleavage of a cleavable linker, or by enzymatic degradation of the polymeric material.
- the vinyl moieties of the presently disclosed PHAs may feasibly be used for covalent attachment of bioactive components such as drugs, enzymes, and hormones.
- release of the bioactive component can be affected by depolymerizing enzymes which cleave the PHA, i.e. an esterase such as a PHA depolymerase or other esterases that degrade PHAs and are found in plant or animal tissues. This can provide for better control of release rate of the bioactive component, as release is dependent on cleavage of covalent bonds rather than diffusion.
- the bioactive component is not released from the polymeric material, i.e. the polymeric material acts a support for the bioactive component. In this case, it is advantageous to covalently link the bioactive component to the polymer to obtain an irreversibly linked bioactive component.
- Such a material may prove more stable than polymeric materials doped with a bioactive component, because the bioactive component may leak from the polymer.
- the vinyl moieties of the presently disclosed PHAs may feasibly be used for covalent attachment of bioactive components.
- the PHAs of the present disclosure may be produced using a suitable cell culture.
- the present inventors have shown that biosynthesis of the scl-mcl-PHA copolymers of the present disclosure can be achieved by a cell comprising a phaC gene encoding a poly(3-hydroxyalkanoate) polymerase and a phaJ gene encoding an (R)- specific enoyl-CoA hydratase.
- a cell comprising: a. a phaC gene encoding a class I poly(3-hydroxyalkanoate) polymerase having at least 90 % sequence identity to SEQ ID NO: 1
- a phaJ gene encoding an (R)-specific enoyl-CoA hydratase having at least 90 % sequence identity to SEQ ID NO: 2
- the cell is capable of producing the polyester copolymer of the present disclosure.
- the cell is Cupriavidus necator.
- the present inventors have found that the specific Cupriavidus necator H16 strain is useful for production of the cells of the present disclosure. Accordingly, in one embodiment of the present disclosure, the cell has been produced from the Cupriavidus necator H16 strain. phaC gene and PHA synthase
- the phaC gene encoding a class I poly(3- hydroxyalkanoate) polymerase is the phaC gene native to the Cupriavidus necator.
- the phaC gene encodes a class I poly(3- hydroxyalkanoate) polymerase that has at least 90 % sequence identity to SEQ ID NO: 1 , such as at least 91 %, 92 %, 93 %, 94 %, 95 %, 96 %, 97 %, 98 %, or 99 % sequence identity.
- the present inventors have found that it is paramount that the cell comprises a phaJ gene encoding a broad specificity (R)-specific enoyl-CoA hydratase.
- R broad specificity
- (R)-specific enoyl- CoA hydratase catalyses the synthesis of (2E)-enoyl-CoA from (3R)- hydroxyacyl-CoA, which is a vital step in the biosynthesis of 3-hydroxyalkanoates.
- the (R)-specific enoyl-CoA hydrate accepts both short- and medium chain length substrates such that it may produce scl-3-hydroxyalkanoates, mcl-3- hydroxyalkanoates, and mcl-3-hydroxyalkenoates.
- the (R)-specific enoyl-CoA hydratase is a broad specificity (R)- specific enoyl-CoA hydratase.
- the phaJ gene native to Cupriavidus necator encodes an (R)-specific enoyl-CoA hydratase which is capable of polymerising only scl substrates.
- the phaJ gene encoding a broad specificity (R)-specific enoyl-CoA hydratase is not native to the cell.
- the phaJ gene may correspond to the gene present in Pseudomonas putida, specifically the KT2440 strain.
- the phaJ gene encoding a broad specificity (R)-specific enoyl-CoA hydratase is the phaJ gene from the Pseudomonas putida KT2440 strain.
- the coding sequence for the (R)-specific enoyl-CoA hydratase of Pseudomonas putida KT2440 is provided herein as SEQ ID NO: 4.
- the broad specificity (R)-specific enoyl-CoA hydratase encoded by this gene is provided herein as SEQ ID NO: 2.
- the phaJ gene encodes a (R)- specific enoyl-CoA hydratase that has at least 90 % sequence identity to SEQ ID NO: 2, such as at least 91 %, 92 %, 93 %, 94 %, 95 %, 96 %, 97 %, 98 %, or 99 % sequence identity.
- the fadE gene encodes acyl-CoA dehydrogenase, which catalyses the reaction of 2,3-saturated alkanoic acids to enoyl-CoA, i.e. the substrate of (R)-specific enoyl-CoA hydratase. Accordingly, it may be favourable to incorporate a fadE gene in the cell of the present disclosure to ensure a sufficient supply of substrate for (R)- specific enoyl-
- the cell comprises a fadE gene encoding an acyl-CoA dehydrogenase.
- the fadE gene encodes an acyl-CoA dehydrogenase having at least 90 % sequence identity to SEQ ID NO: 3.
- the fadE gene has at least 90 % sequence identity to SEQ ID NO: 5.
- the fadE gene is that native to the Escherichia coli K12 strain.
- the cell of the present disclosure is capable of using alkenoic acids as carbon source. Specifically, it is considered that the cell of the disclosure is capable of using alkenoic acids having terminal alkenes. Examples of alkenoic acids are hex-5- enoic acid, hept-6-enoic acid, oct-7-enoic acid, non-8-enoic acid, dec-9-enoic acid, undec-10-enoic acid, and/or dodec-11 -enoic acid. The cell of the present disclosure has been shown to use undec-10-enoic acid as a carbon source.
- Undec-10-enoic acid is converted to mcl-3-hydroxyalkenoates and incorporated into the PHA copolymers of the disclosure.
- Undec-10-enoic acid is an inexpensive reagent.
- the cell is capable of using undec-10-enoic acid.
- the disclosed cell is capable of using fructose as a sole carbon source.
- Undec-10-enoic acid is desired for the production of the PHA copolymers of the present disclosure.
- the cell is capable of using undec-10-enoic acid and fructose as a carbon source.
- 13-oxidation mediates truncation of the undec-10-enoic of the growth and production medium to mcl-3-hydroxyalkanoate (C7 and C9). Accordingly, it may be an advantage that some 13-oxidation occurs such that the undec-10-enoic is converted to the desired substrates. However, 13-oxidation can also affect further conversion of the desired substrates 3-hydroxyhept-6-enoate and 3-hydroxynon-8-enoate, effectively reducing the amount of mcl-3-hydroxyalkenoate substrate available to the cell.
- the cell growth medium comprises a 13-oxidation inhibitor.
- the 13-oxidation inhibitor is acrylic acid.
- the growth medium comprises 10 to 100 mM acrylic acid.
- the growth medium comprises 10 to 20 mM acrylic acid, such as 20 to 30, such as 30 to 40, such as 40 to 50, such as 50 to 60, such as 60 to 70, such as 70 to 80, such as 80 to 90, such as 90 to 100 mM acrylic acid.
- the grown medium comprises 10 to 40 mM acrylic acid.
- the cells of the present disclosure are capable of accumulating a high amount of PHA copolymer.
- the cell is capable of accumulating at least 15 % of the PHA of the disclosure in cell dry weight.
- the cell is capable of accumulating at least 20 % of the PHA in cell dry weight.
- the cell is capable of accumulating at least 25 % of the PHA copolymer in cell dry weight.
- the cell is capable of accumulating at least 30 % of the PHA copolymer in cell dry weight.
- One embodiment of the present disclosure provides for a method of producing the polyester copolymer of the disclosure, said method comprising the steps of: a. providing the cell as disclosed herein, and b. cultivating said cell in a growth medium comprising an alkenoic acid, thereby obtaining said polyester copolymer.
- the growth medium comprises fructose.
- the growth medium comprises a 13-oxidation inhibitor.
- the 13-oxidation inhibitor is acrylic acid.
- the cells are fermented at 26.0 to 31 .0 °C, such as at 27.0 to 30.0 °C, such as 27.5 to 29.5 °C.
- the cells are fermented at a pH of 6.6 to 7.1 , such as 6.7 to 7.0.
- air saturation is maintained at 20 % or more, such as 25 % or more, such as 30 % or more.
- fructose and a mixture of alkanoic acid and alkenoic acid are fed to the cells.
- the ratio of fructose to a mixture of alkanoic acid and alkenoic acid is 90:10 to 10:90 (mol(fructose):mol(alkanoic acid+alkenoic acid).
- the ration of fructose to the mixture of alkanoic acid and alkenoic acid is approximately 70:30 (mol(fructose):mol(alkanoic acid+alkenoic acid).
- alkanoic acid and alkenoic acid is fed to the cells.
- alkanoic acid and alkenoic acid is fed to the cells in a ratio of 97:3 to 50:50 (mol(alkanoic acid):mol(alkenoic acid)).
- the ratio of alkanoic acid to alkenoic acid is approximately 90:10 (mol(alkanoic acid):mol(alkenoic acid)).
- the alkanoic acid is decanoic acid.
- the alkenoic acid is dec-9-enoic acid.
- the cells are fermented in the presence of a 13-oxidation inhibitor at a concentration as outlined in the section “13- oxidation inhibition”.
- Example 1 Production and cultivation of recombinant strain
- the plasmid pMPJAS03 was constructed using the broad host range p- BTB3 (Lynch et al. 2006) and pK18 (Pridmore 1987) plasmids as backbones. Both plasmids were digested with Hind ⁇ and fused to form pMPJASOI .
- the plasmid GS45640-1 pBSK gene 1 (GenBank Accession NC_000913) harbouring fadEEc was linearized with Hind ⁇ and blunt-ended with Klenow.
- Gene phaJPp from plasmid GS45640-1 gene 2 (GenBank Accession NC_ 002947) was released with EcoRV/X/iol, blunt-ended with Klenow.
- Plasmid pMPJAS02 resulted from fusing the linearized plasmid GS45640-1 pBSK gene 1 and the phaJIPp fragment.
- the fadEEc - phaJIPp fragment harboured in pMPJAS02 was released with Acc ⁇ IHind ⁇ , blunt-ended with Klenow, and inserted into pMPJASOI to create the plasmid pMPJAS03.
- the plasmid was introduced via electroporation into C. necator H16, generating the recombinant C. necator H16/pMPJAS03.
- the recombinant plasmid harboured a kanamycin and chloramphenicol resistance properties, and the fadEEc - phaJIPp DNA fragment under the arabinose promoter (araC-PBAD).
- a schematic representation of pMPJAS03 plasmid construction is depicted in FIG 7.
- FIGs 4-6 shows schematic representation of the remaining plasmids used for the construction of pMPJAS03. Plasmid construction was aided by gel electrophoresis screening.
- the recombinant plasmid pMPJAS03 harbours kanamycin and chloramphenicol resistance genes and was designed to co-express fadE from E. coli strain K12 and phaJ1 from P. putida strain KT2440 genes under the arabinose promoter (araC-PBAD) (Araceli et al. 2020).
- Fermentations were conducted in a 5.0 L stirred tank bioreactor (Infor HT, Bottmingen, Switzerland), with a working volume of 3.0 L. Temperature was set at 30.0°C ⁇ 1 .0 and pH automatically controlled at 6.85 ⁇ 0.05 with the addition of NH4OH 28 % (w/v) solution or KOH 2M. Dissolved oxygen was monitored with an Ingold polarographic electrode (Mettler Toledo, Hamilton Company, USA) and maintained at or above 30% of air saturation. The aeration was kept at 2.0 l/min through a controlled addition of air with pure oxygen. Stirring was provided by two six-blade Rushton impellers at speed of 700 rpm.
- CO2 was measured in the outlet gas stream with an infrared CO2 monitor (Guardian Plus, Topac Inc. Hingham, MA). LabVIEW6.1 (National Instruments, Austin, Texas) was used to record the CO2 production (CPR g/L h) and to control the feeding of fructose and canola oil/DA with peristaltic pumps based on the mass of the reservoirs.
- the carbon sources were fed from separate reservoirs, one for canola oil/DA mixtures and other for concentrated fructose solution.
- a 300 ml inoculum was distributed in 3 shake flasks of 500 mL and incubated at 30°C and 200 rpm. After 24 h, the inoculum was transferred aseptically to the bioreactor. The fermentation was conducted in three stages:
- Stage 1 Initial cultivation was conducted in batch mode, 2.0 g/L of fructose was used as sole carbon source.
- Stage 2 Exponential cell growth. Fructose and canola oil (9:1 ) were fed at a specific growth rate of 0.14 IT 1 . PH was controlled by the addition of NH4OH 28 % (w/v).
- Stage 3 PHA synthesis through NH4 limitation. Constant feeding was set at 2.5 g/L h of total substrates (canola oil/DA). Decanoic acid was solubilized to room temperature by adding 15% (v/v) of acetic acid before canola oil/DA mixing. The fadE and phaJ1 genes in the plasmid pMPJAS03 under the control of araC-PBAD promoter were constitutively expressed at the beginning of the stage by the addition of 0.1% (v/v) of arabinose. NH4 concentration was maintained at approximately 0.4 g/L in the culture by the addition of ammonium sulfate in aqueous solution as required.
- the inoculum medium contained per litre: 9.0 g of fructose, 3.7 g NH4SO4, 5.66 g NaH2PO4-12H2O, 2.70 g KH2PO4.7H2O, 0.4 g MgSO4-7H2O and 1.0 nutrient broth.
- the continuous culture mineral medium contained per litre: 1.8 g NH4SO4, 5.66 g NaH2PO4-12H2O, 2.70 g KH2PO4.7H2O, 0.4 g MgSO4-7H2O and 2.0 ml of trace element solution (10 g FeSO4 7H2O, 3.0 g CaCI2 2H2O, 0.3 g H3BO3, 0.2 g CoCI2-6H2O, 2.2 g ZnSO4-7H2O, 0.5 g MnSO2-4H2O, 0.15 g Na2MoO4-2H2O, 0.02 g NiCI2 6H2O and 1.0 g CuSO4 5H2O).
- a 150 ml inoculum was cultivated at 30°C and 200 rpm in a 500 mL shake flask. After 24 h, the inoculum was transferred aseptically to the bioreactor.
- the bioreactor was operated in batch mode using the mineral salt medium above described supplemented with 10 g/L of fructose and 4.2 g/L of NH4SO4. After fructose was depleted, the system was shifted to continuous culture cultivation, with a constant dilution rate of 0.14 IT 1 .
- the mineral flow rate was set at 0.21 L/h and the total substrate rate was maintained at 5.7 g/L, with a molar ratio of 0.69/0.31 of fructose and decanoic acid, respectively.
- Decanoic acid was supplemented with 10 % of undecylenic acid in all cases.
- the volume of the culture was maintained at 1 .5 L until reaching the steady-state. Steady-state was assumed once the DO and CPR plateau and maintained for a minimum of 5 working volumes.
- Reported data are the average of at least three samples taken three hours apart at each steady-state.
- Fatty acid methyl esters evaluation was carried out according to the following method: 50 mg of lyophilized biomass was mixed with 2 mL of chloroform and 1 mL of methanol containing 14% (v/v) sulfuric acid and 0.2% (v/v) of benzoic acid as the internal standard. The reaction was conducted in borosilicate glass tubes with hermetic screw caps. Reagents and lyophilized biomass were mixed thoroughly in the tubes where were place in a water bath at 100 ⁇ 2°C for 4h. The tubes were cooled to room temperature, and 2 mL of distilled water was added, the resulting organic phase was later gently collected for GC analysis.
- a fed-batch fermentation of C. necator H16/pMPJAS03 produced 59.7 g/L of dry biomass containing 49 % PHA by weight.
- necator allows the native synthase to polymerize substrates are large as C10 and to be able to incorporate vinyl groups in subunits as large as C7.
- the results also showed that the C11 substrate undecylenic acid is truncated by 4 carbons through 13-oxidation before being incorporated into the polymer. It is assessed that a PHA bearing vinyl groups on 0.73 mol% of its subunits is suitable for many applications requiring bioactive PHA.
- undecylenic acid derived from castor oil
- This work reveals a practical economical method of producing scl-mcl PHA with vinyl subunits.
- Table 1 PHA copolymer composition as a function of acrylic acid concentration in the feed. PHA content and composition were determined in triplicate. Mean values and standard deviation are shown.
- a polyester copolymer comprising: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3- hydroxyhept-6-enoate and/or 3-hydroxynon-8-enoate subunits.
- a polyester copolymer comprising: a. 85.0 - 99.5 mol% of one or more saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 5 mol% of one or more medium-chain-length 3- hydroxyalkenoate subunits, wherein the medium-chain-length 3-hydroxyalkenoate subunits comprise a terminal alkene moiety in the side chain.
- the polyester copolymer according to any one of the preceding items, wherein the alkene moiety is a terminal alkene moiety.
- polyester copolymer according to any one of the preceding items, wherein the saturated short-chain-length polyhydroxyalkanoate subunits are saturated short- chain-length 3-hydroxyalkanoate subunits.
- polyester copolymer according to any one of the preceding items, wherein the saturated short-chain-length 3-hydroxyalkanoate subunits are 3-hydroxybutyrate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3- hydroxyhept-6-enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. saturated short-chain-length hydroxyalkanoate subunits, and b. 3- hydroxynon-8-enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. 60.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 40.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8- enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. 70.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 30.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8- enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. 80.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 20.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8- enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. 90.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 10.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8- enoate subunits.
- polyester copolymer according to any one of the preceding items, comprising: a. 95.0 - 99.5 mol% saturated short-chain-length hydroxyalkanoate subunits, and b. 0.5 - 5.0 mol% 3-hydroxyhept-6-enoate and/or 3-hydroxynon-8- enoate subunits.
- a method of producing the polyester copolymer according to any one of the preceding items comprising the steps of: a. providing a cell comprising: i. a phaC gene encoding a class I poly(3-hydroxyalkanoate) polymerase having at least 90 % sequence identity to SEQ ID NO: 1 , and ii. a phaJ gene encoding an (R)-specific enoyl-CoA hydratase having at least 90 % sequence identity to SEQ ID NO: 2. b. cultivating said cell in a growth medium comprising an alkenoic acid, thereby obtaining said polyester copolymer.
- the class I poly(3-hydroxyalkanaote) polymerase has at least 91 % sequence identity to SEQ ID NO: 1 , such as at least 92 %, 93 %, 94 %, 95 %, 96 %, 97 %, 98 %, such as at least 99 % sequence identity to SEQ ID NO: 1 .
- phaJ gene encoding a broad specificity (R)-specific enoyl-CoA hydratase is the phaJ gene from the Pseudomonas putida KT2440 strain.
- the cell further comprises a fadE gene encoding an acyl-CoA dehydrogenase having at least 90 % sequence identity to SEQ ID NO: 3.
- phaJ gene encoding a broad specificity (R)-specific enoyl-CoA hydratase is the phaJ gene from the Pseudomonas putida KT2440 strain.
- the cell further comprises a fadE gene encoding an acyl-CoA dehydrogenase having at least 90 % sequence identity to SEQ ID NO: 3.
- acyl-CoA dehydrogenase has at least 91 % sequence identity to SEQ ID NO: 3, such as at least 92 %, 93 %, 94 %, 95 %, 96 %, 97 %, 98 %, such as at least 99 % sequence identity to SEQ ID NO: 3.
- the fadE gene encoding an acyl-CoA dehydrogenase is fadE gene from the Escherichia coli K12 strain.
- PHA synthase Poly(3-hydroxyalkanoate) polymerase: MATGKGAAASTQEGKSQPFKVTPGPFDPATWLEWSRQWQGTEGNGHAAASGIPGL DALAGVKIAPAQLGDIQQRYMKDFSALWQAMAEGKAEATGPLHDRRFAGDAWRTNLP YRFAAAFYLLNARALTELADAVEADAKTRQRIRFAISQWVDAMSPANFLATNPEAQRLL IESGGESLRAGVRNMMEDLTRGKISQTDESAFEVGRNVAVTEGAVVFENEYFQLLQYK PLTDKVHARPLLMVPPCINKYYILDLQPESSLVRHWEQGHTVFLVSWRNPDASMAGS TWDDYIEHAAIRAIEVARDISGQDKINVLGFCVGGTIVSTALAVLAARGEHPAASVTLLTT LLDFADTGILDVFVDEGHVQLREATLGGGAGAPCALLRGLELANTFSFLRPNDLVWNY WDNY
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| US18/030,970 US20240060099A1 (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoates having vinyl moieties and method of producing such |
| JP2023516840A JP2023544255A (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoate having a vinyl moiety and its production method |
| CN202180069129.6A CN116348590A (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoates having vinyl moieties and methods for their production |
| KR1020237012148A KR20230084175A (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoate having a vinyl moiety and method for preparing the same |
| CA3233027A CA3233027A1 (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoates having vinyl moieties and method of producing such |
| EP21877073.3A EP4225825A4 (en) | 2020-10-09 | 2021-10-11 | Poly-3-hydroxyalkanoates having vinyl moieties and method of producing such |
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| CN109266597B (en) * | 2018-09-30 | 2021-07-16 | 清华大学 | A kind of method of microorganism producing short-medium-long-chain polyhydroxyalkanoic acid copolymer |
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Non-Patent Citations (5)
| Title |
|---|
| "Contents", JOURNAL OF COMPUTER AND SYSTEM SCIENCES., ACADEMIC PRESS, INC., LONDON., GB, vol. 72, no. 6, 1 September 2006 (2006-09-01), GB , pages CO4, XP005593117, ISSN: 0022-0000 * |
| HÖFER PHILIPP; CHOI YOUNG J; OSBORNE MICHAEL J; MIGUEZ CARLOS B; VERMETTE PATRICK; GROLEAU DENIS: "Production of functionalized polyhydroxyalkanoates by genetically modified Methylobacterium extorquens strains", MICROBIAL CELL FACTORIES, vol. 9, no. 1, 16 September 2010 (2010-09-16), pages 70, XP021077218, ISSN: 1475-2859, DOI: 10.1186/1475-2859-9-70 * |
| IMAMURA, T. ET AL.: "Direct Biosynthesis ofPoly(3-hydroxyalkanoates) Bearing Epoxide Groups", INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, vol. 29, no. 4-5, 2001, pages 295 - 301, XP001053257, ISSN: 0141-8130, DOI: 10.1016/S0141-8130(01)00179-9 * |
| PHILIPP HÖFER; PATRICK VERMETTE; DENIS GROLEAU;: "Production and characterization of polyhydroxyalkanoates by recombinant: Combining desirable thermal properties with functionality", BIOCHEMICAL ENGINEERING JOURNAL, ELSEVIER, AMSTERDAM, NL, vol. 54, no. 1, 11 January 2011 (2011-01-11), NL , pages 26 - 33, XP028368001, ISSN: 1369-703X, DOI: 10.1016/j.bej.2011.01.003 * |
| See also references of EP4225825A4 * |
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| CN116348590A (en) | 2023-06-27 |
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| EP4225825A4 (en) | 2024-10-09 |
| CA3233027A1 (en) | 2022-04-14 |
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| JP2023544255A (en) | 2023-10-23 |
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