AP886A - Mutated 5-enol pyruvylshikimate-3-phosphate synthase, gene coding for said protein and transformed plants containing said gene. - Google Patents

Mutated 5-enol pyruvylshikimate-3-phosphate synthase, gene coding for said protein and transformed plants containing said gene. Download PDF

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AP886A
AP886A APAP/P/1998/001195A AP9801195A AP886A AP 886 A AP886 A AP 886A AP 9801195 A AP9801195 A AP 9801195A AP 886 A AP886 A AP 886A
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thr
ala
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Michel Lebrun
Alain Sailland
Georges Freyssinet
Eric Degryse
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Bayer Sas
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    • C12N9/1085Transferases (2.) transferring alkyl or aryl groups other than methyl groups (2.5)
    • C12N9/10923-Phosphoshikimate 1-carboxyvinyltransferase (2.5.1.19), i.e. 5-enolpyruvylshikimate-3-phosphate synthase
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    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
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    • C12N15/8274Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
    • C12N15/8275Glyphosate
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Abstract

A mutated glyphosale resistance gene of 5-enol pyruvylshikimate-3-phosphate synthasc (EPSPS) including at least one substitution of threonmc 102 by isoleucine. and useful for producing glyphosate-resiscant transformed plants, is disclosed.

Description

Mutated 5-enolpyruvylshikimate-3-phosphate synthase, gene coding for this protein and transformed plants containing this gene
The present invention relates to a new 5 5-enolpyruvylshikimate-3-phosphate synthase (or EPSPS) which displays increased tolerance with respect to herbicides which are competitive inhibitors with respect to phosphonoenolpyruvate (PEP) of EPSPS activity. This more tolerant EPSP synthase possesses at least one threonine by isoleucine substitution. The invention also relates to a gene coding for such a protein, to plant cells transformed by chimeric gene constructions containing this gene, to the plants regenerated from these cells and also to the plants originating from crossing using these transformed plants .
Glyphosate, sulfosate or fosametine are broad-spectrum systemic herbicides of the phosphonomethylglycine family. They act essentially as competitive inhibitors of 5-enolpyruvylshikimate-3phosphate synthase (EC 2.5.1.19) or EPSPS with respect to the PEP (phosphoenolpyruvate). After their application to the plant, they are translocated in the plant where they accumulate in the rapidly growing parts, in particular the cauline and root apices, causing damage to the point of destruction of sensitive plants .
AP/P/ 9 8/01 195
ΑΡ υ υ ϋ 8 8 6
Plastid EPSPS, the main target of these products, is an enzyme of the pathway of biosynthesis of aromatic amino acids, which is encoded by one or more nuclear genes and synthesized in the form of a cytoplasmic precursor, then imported into the plastids where it accumulates in its mature form.
The tolerance of plants to glyphosate and to products of the family is obtained by stable introduction into their genome of an EPSPS gene, of
-i. 10 plant or bacterial origin, which is mutated or
V. « otherwise in respect of the characteristics of inhibition by glyphosate of the product of this gene.
In view of the mode of action of glyphosate and the degree of tolerance to glyphosate of the product of the genes which are used, it is advantageous to be able to express the product of the translation of this gene so as enable it to be accumulated in substantial amounts ·<>
in the plastids.
v-y It is known, for example from US Patent
4,535,060, to confer on a plant a tolerance to a herbicide of the above type, especially N-phosphonomethylglycine or glyphosate, by introducing into the genome of plants a gene coding for an EPSPS carrying at least one mutation that makes this enzyme more resistant to its competitive inhibitor (glyphosate) after localization of the enzyme in the plastid compartment. These techniques, however, need to be improved in order to obtain greater reliability in the use of these plants under agricultural conditions.
U υ ύ 8 8 6
-3Ιη the present description, plant is understood to mean any differentiated multicellular organism capable of photosynthesis, and plant cell is understood to mean any cell originating from a plant and capable of constituting undifferentiated tissues such as calluses or differentiated tissues such a embryos or plant parts or seeds.
The subject of the present invention is the production of transformed plants having increased tolerance to herbicides having EPSP synthase as their target, e.g. of the phosphonomethylglycine family, e.g. glyphosate or a glyphosate precursor, by regeneration of cells transformed by means of new chimeric genes containing a gene for tolerance to these herbicides.
The invention accordingly provides a DNA sequence coding for a mutated
5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), characterized in that the EPSPS is from maize and comprises a first mutation consisting in the threonine 102 -+ isoleucine substitution and a second mutation consisting in a substitution of proline 106 by serine; the invention also provides a DNA sequence coding for a mutated 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), characterised in that it comprises the coding region of the DNA sequence represented in SEQ ID No. 2, comprising a first mutation consisting in the threonine 102 isoleucine substitution and a second mutation consisting in a substitution of proline 106 by serine; and a DNA sequence coding for a mutated 5-enolpyruvylshikimate -3-phosphate synthase (EPSPS), characterised in that it comprises the coding sequence of SEQ ID No. 4.
According to a further feature of the invention there is provided a 5enolpyruvylshikimate -3-phosphate synthase (EPSPS), characterized in that the EPSPS is from maize and comprises a first mutation consisting in the substitution of threonine 102 by isoleucine and a second mutation consisting in a substitution of proline 106 by serine.
The invention also provides a chimeric gene comprising a coding sequence as well as regulatory elements at position 5' and 3' which are heterologous and capable of functioning in plants, characterized in that it comprises as coding sequence at least one sequence according to the invention.
ΑΡ ο ο ο β 8 6
3a
The chimeric gene of the invention for conferring on plants increased tolerance with respect to a herbicide having EPSPS as its target, generally comprises, in the direction of transcription: a promoter region, optionally a transit peptide region, a sequence of a gene coding for a glyphosate tolerance enzyme and an untranslated polyadenylation signal region at the 3' end, characterized in that the glyphosate tolerance gene contains, relative to the gene from which it is derived, a threonine 102 by isoleucine substitution in the aroA (EPSPS) region and, in the same region, a proline 106 by serine substitution. These substitutions can be introduced or be present in an EPSPS sequence of any
AP Ο Ο Ο 8 8 6 origin, in particular of plant, bacterial, algal or fungal origin.
The transit peptides which can be used in the transit peptide region can be, known per se, of plant origin, for example originating from maize, sunflower, pea, tobacco or the like. The first and the second transit peptide can be identical, similar or different. They can, in addition, each comprise one or more transit peptide units according to European Patent Application EP 0 508 909. It is the role of this characteristic region to permit the release of a mature and native protein, and especially the above mutated EPSPS, with maximum efficacy in the plasmid compartment.
The promoter region of the chimeric gene according to the invention may comprise a plant virus promoter; the region may be advantageously composed of at least one gene promoter or promoter fragment which is expressed naturally in plants (e.g. tubulin, generally α-tubulin, introns actin, histone).
The untranslated transcription termination signal region at the 3’ end of the chimeric gene may be of any origin, for example of bacterial origin, such as that of the nopaline synthase gene, or of plant origin, such as that of the Arabidopsis thaliana histone H4A748 gene according to the European Patent Application (European Application 633 317).
The chimeric gene according to the invention can comprise, in addition to the essential portions
AP ϋ υ Ο 8 8 6
-5above, at least one untranslated intermediate (linker) region, which can be located between the different transcribed regions described above. This intermediate region can be of any origin, for example of bacterial, viral or plant origin.
The method of the invention for the production of plants with improved tolerance to a herbicide having EPSP synthase activity as its target, characterised in that plant cells or protoplasts are transformed with a gene according to the invention and in that the transformed cells are subjected to a regeneration. The plants obtained may be used to prepare hybrid lines.
Isolation of a cDNA coding for a maize EPSPS:
The different steps which led to the obtaining of maize EPSPS cDNA, which served as substrate for the introduction of the two mutations, are described below. All the operations described below are given by way of example, and correspond to a choice made from among the different methods available for arriving at the same result. This choice has no effect on the quality of the result, and consequently any suitable method may be used by a person skilled in the art to arrive at the same result. Most of the methods of engineering of DNA fragments are described in Current Protocols in Molecular Biology Volumes 1 and 2, Ausubel ♦ F.M. et al., published by Greene Publishing Associates and Wiley-Interscience (1989) (hereinafter, references to protocols described in this work will be designated ref. CPMB). The operations relating to DNA which were performed according to the protocols described in this work are especially the following: ligation of DNA fragments, treatment with Klenow DNA polymerase and T4 DNA polymerase, preparation of plasmid and of bacteriophage λ DNA, either as a minipreparation or as a maxipreparation, and DNA and
AP υ υ ϋ 8 β 6 minipreparation or as a maxipreparation, and DNA and RNA analyses according to the Southern and Northern techniques, respectively. Other methods described in this work were followed, and only significant modifications or additions to these protocols have been described below.
Example 1:
1. Obtaining of an Arabidopsis thaliana EPSPS fragment
a) Two 20-mer oligonucleotides of respective sequences :
5'-GCTCTGCTCATGTCTGCTCC-3'
5’-GCCCGCCCTTGACAAAGAAA-3’ were synthesized from the sequence of an Arabidopsis thaliana EPSPS gene (Klee H.J. et al. (1987) Mol. Gen. Genet., 210, 437-442). Tksse two oligonucleotides are at positions 1523 to 1543 and 1737 to 1717, respectively, of the published sequence, and in opposite orientations.
b) Arabidopsis thaliana (var. Columbia) total
DNA was obtained from Clontech (catalogue reference:
6970-1).
c) 50 nanograms (ng) of DNA are mixed with 300 ng of each of the oligonucleotides and subjected to
35 amplification cycles with a Perkin-Elmer 9500 apparatus, under the conditions of standard medium for amplification which are recommended by the supplier.
AP/P/ 9 8/01 195
AP U U ϋ 8 8 6
The resulting 204-bp fragment constitutes the
Arabidopsis thaliana EPSPS fragment.
2. Construction of a library of a cDNA from a
BMS maize cell line
a) 5 g of filtered cells are ground in liquid nitrogen, and the total nucleic acids are extracted according to the method described by Shure et al. with the following modifications:
the pH of the lysis buffer is adjusted to PH 9.0;
after precipitation with isopropanol, the pellet is taken up in water and, after dissolution, adjusted to 2.5 M
LiCl. After incubation for 12 h at °C, the pellet from centrifugation for 15 min at 30,000 g at 4°C is resolubilized. r The LiCl precipitation step is then repeated. The resolubilized pellet constitutes the RNA fraction of the total nucleic acids.
b) The poly(A)+ RNA fraction of the RNA fraction is obtained by chromatography on an oligo(dT)cellulose column as described in Current Protocols in
Molecular Biology.
c) Synthesis of double-stranded cDNA having a synthetic EcoRI end: this is carried out according to the protocol of the supplier of the different reagents needed for this synthesis penny form of a kit: the
AP/P/ 98/01 195
AP 0 U Ο 8 8 6 copy kit from the company In Vitrogen.
Two single-stranded and partially complement airy oligonucleotides of respective sequences:
5'-AATTCCCGGG-3'
5'-CCCGGG-3' (the latter being phosphorylated) are ligated with the blunt-ended double-stranded cDNAs.
This ligation of the adaptors results in the creation of Smal sites attached to the double-stranded cDNAs and EcoRI sites in cohesive form at each end of the double-stranded CDNAs.
d) Creation of the library:
The cDNAs possessing the artificial cohesive
EcoRI sites at their ends are ligated with bacteriophage XgtlO cDNA which has been cut with EcoRI and dephosphorylated according to the protocol of the supplier New England Biolabs.
An aliquot of the ligation reaction was encapsidated in vitro with encapsidation extracts, namely Gigapack Gold, according to the supplier's instructions; this library was titrated using the bacterium E. coli C600hfl. The library thereby obtained is amplified and stored according to the instructions of the same supplier, and constitutes the BMS maize cell suspension cDNA library.
3. Screening of the BMS maize cell suspension cDNA library with the AraJbidopsis thaliana EPSP probe The protocol followed is that of Current
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ΑΡ ο ο Ο 8 8 6
Protocols in Molecular Biology Volumes 1 and 2,
Ausubel F.M. et al., published by Greene Publishing Associates and Wiley-Interscience (1989)(CPMB).
Briefly, approximately 106 recombinant phages are plated out on LB dishes at an average density of 100 phages/cm2. The lytic plaques are replicated in duplicate on Amersham Hybond N membranes.
h) The DNA was fixed to the filters by 1600kJ
UV treatment (Stratagene Stratalinker). The filters were prehybridized in 6xSSC/0.1%SDS/O.25 skimmed milk for 2 h at 65°C. The Arabidopsis thaliana EPSPS probe was labelled with [32P]dCTP by random priming according to the supplier's instructions (Pharmacia Ready to Go kit). The specific activity obtained is of the order of
108 cpm per μg of fragment. After denaturation for 5 min at 100°C, the probe is added to the prehybridization medium and hybridization is continued for 14 hours at 55°C. The filters are fluorographed for h at -80°C with Kodak XAR5 film and Amersham
Hyperscreen RPN enhancing screens. Alignment of the positive spots on the filter with the dishes from which, they originate enables zones corresponding to the phages displaying a positive hybridization response with the Arabidopsis thaliana EPSPS probe to be picked out from the dish. This step of plating out, transfer, hybridization and recovery is repeated until all the spots in the dish of the successively purified phages prove 100¾ positive in hybridization. A plaque of
98/01195 i‘.: ··«»
ΑΡ υ ο ΰ 8 8 6 independent phage lysis is then picked out in diluent λ medium (Tris-Cl pH 7.5; lOmM MgSO4; 0.1M NaCl; 0.1¾ gelatin); these phages in solution constitute the EPSPpositive clones of the BMS maize cell suspension.
4. Preparation and analysis of the DNA of the
EPSP clones of the BMS maize cell suspension
Approximately 5xl08 phages are added to 20 ml of C600hfl bacteria at an OD600nm value of 2/ml and incubated for 15 minutes at 37°C. This suspension is then diluted in 200 ml of bacterial growth medium in a
1-1 Erlenmeyer and stirred in a rotary stirrer at 250 rpm. Lysis is noted when the medium clarifies, corresponding to the lysis of the turbid bacteria, and takes place after approximately 4 h of stirring. This supernatant is then treated as described in Current Protocols in Molecular Biology. The DNA obtained corresponds to the EPSP clones of the BMS ma4,ze cell suspension.
One to two gg of this DNA are cut with EcoRI and separated on 0.8¾ LGTA/TBE agarose gel (ref. CPMB). A final verification consists in checking that the purified DNA does indeed display a hybridization signal with the Arabidopsis thaliana EPSPS probe. After electrophoresis, the DNA fragments are transferred onto
Amersham Hybond N membranes according to the protocol of Southern described in Current Protocols in
Molecular Biology. The filter is hybridized with the
Arabidopsis thaliana EPSPS probe according to the
Ci o
oo a
AP U Ο ϋ 8 8 6 conditions described in section 3 above. The clone displaying a hybridization signal with the Arabidopsis thaliana EPSPS probe and containing the longest EcoRI fragment has a size estimated on gel as approximately
1.7 kbp.
5. Obtaining of the clone pRPA-KL-711 Ten qg of the phage clone containing the
1.7-kbp insert are digested with EcoRI and separated on 0.8% LGTA/TBE agarose gel (ref. CPMB). The gel fragment containing the 1.7-kbp insert is excised from the gel by BET staining, and the fragment is treated with β-agarse according to the protocol of the supplier, New
CD
the 1.7-kbp O>
with the DNA of
OO
cut with EcoRI o
0« according to the ligation protocol described in
Current Protocols in Molecular Biology. Two μΐ of the above ligation mixture are used for the transformation of an aliquot of electrocompetent E. coli DH10B; transformation is accomplished by electroporation using the following conditions: the mixture of competent bacteria and and ligation medium is introduced into an electroporation cell of thickness 0.2 cm (Biorad) previously cooled to 0°C. The physical conditions of the electroporation using an electroporator made by Biorad are 2500 volts, 25 μΕ and 200 Ω. Under these conditions, the mean discharge time of the condenser is of the order of 4.2 milliseconds. The bacteria are then
Al υ „ ύ 8 8 6 taken up in 1 ml of SOC medium (ref. CPMB) and stirred for 1 hour at 200 rpm on a rotary stirrer in 15-ml Corning tubes. After plating out on LB/agar medium supplemented with 100 Bg/ml of carbenicillin, minipre5 parations of the bacterial clones which have grown after one night at 37°C is produced according to the protocol described in Current Protocols in Molecular Biology. After digestion of the DNA with EcoRI and separation by electrophoresis on 0.8¾ LGTA/TBE agarose gel (ref. CPMB), the clones possessing a 1.7-kbp insert are retained. A final verification consists in checking that the purified DNA does indeed display a hybridization signal with the Arabidopsis thaliana EPSPS probe. After electrophoresis, the DNA fragments are transferred onto Amersham Hybond N membranes according to the protocol of Southern described in Current Protocols in Molecular Biology. The filter is hybridized with the Arabidopsis thaliana EPSPS probe according to the conditions described in section 3 above. The plasmid clone possessing a 1.7-kbp insert and hybridizing with the Arabidopsis thaliana EPSPS probe was prepared on a larger scale, and the DNA resulting from the lysis of the bacteria was purified on a CsCl gradient as described in Current Protocols in Molecular Biology. The purified DNA was partially sequenced with a Pharmacia kit according to the supplier's instructions and using as primers the M13 direct and reverse universal primers ordered from the in c>
co
CP
A
At
AP Ο Ο Ο 8 8 6 same supplier. The partial sequence produced covers approximately 0.5 kbp. The derived amino acid sequence in the region of the mature protein (approximately 50 amino acid residues) displays 100¾ identity with the corresponding amino sequence of mature maize EPSPS described in American Patent USP 4,971,908). This clone, corresponding to a 1.7-kbp EcoRI fragment of the EPSP DNA of the BMS maize cell suspension, was designated pRPA-ML-711. The complete sequence of this clone was determined on both strands using the protocol of the Pharmacia kit and synthesizing complementary oligonucleotides and those of the opposite orientation every 250 bp approximately. The complete sequence obtained of this 1713-bp clone is presented in SEQ ID
No. 1.
6. Obtaining of the clone pRPA-ML-715
Analysis of the sequence of the clone pRPAML-711, and especially comparison of the derived amino acid sequence with that of maize, shows a sequence 20 extension of 92 bp upstream of the GCG codon coding for the NH2-terminal alanine of the mature portion of maize EPSPS (American Patent USP 4,971,908). Similarly, an extension of 288 bp downstream of the AAT codon coding for the COOH-terminal asparagine of the mature portion of maize EPSPS (American Patent USP 4,971,908) is observed. These two portions could correspond, in the case of the NH2-terminal extension to a portion of the sequence of a transit peptide for plastid localization,
P/P/ 9 8/01195
APO00886 and, in the case of the COOH-terminal extension, to the untranslated 3' region of the cDNA.
In order to obtain a cDNA coding for the mature portion of the maize EPSPS cDNA, as described in 5 USP 4,971,908, the following operations were carried out:
a) Removal of the untranslated 3' region:
construction of pRPA-ML-712:
The clone pRPA-ML-711 was cut with the restriction enzyme Asel, and the ends resulting from this cleavage were rendered blunt by treatment with the
Klenow fragment of DNA polymerase I according to the protocol described in CPMB. A cleavage with the restriction enzyme SacII was then performed. The DNA 15 resulting from these operations was separated by electrophoresis on 1¾ LGTA/TBE agarose gel (ref. CPMB).
The gel fragment containing the 0.4-kbp ’ £'b,
Asel-blunt ends/SacII insert was excised from the gel and purified according to the protocol described in section 5 above. The DNA of the clone pRPA-ML-711 was cut with the restriction enzyme Hindlll [lacuna] located in the polylinker of the cloning vector pUC19, and the ends resulting from this cleavage were rendered blunt by treatment with the Kl-now fragment of DNA polymerase I. A cleavage with the restriction enzyme
SacII was then performed. The DNA resulting from these manipulations was separated by electrophoresis on 0.7¾
LGTA/TBE agarose gel (ref. CPMB).
8/01 195
ΑΡ υ υ υ 8 a β
The gel fragment containing the approximately
3.7-kbp Hindlll-blunt ends/SacII insert was excised from the gel and purified according to the protocol described in section 5 above.
The two inserts were ligated, and 2 μΐ of the ligation mixture were used to transform E. coli DH10B as described above in section 5.
The plasmid DNA content of different clones was analysed according to the procedure described for pRPA-ML-711. One of the plasmid clones selected contains an approximately 1.45-kbp EcoRI-Hindlll insert. The sequence of the terminal ends of this clone reveals that the 5' end of the insert corresponds exactly to the corresponding end of pRPA-ML-711, and that the 3’-terminal end possesses the following sequence:
5'- . . .AATTAAGCTCTAGAGTCGACCTGCAGGCATGCAAGCTT-3'
8/01 195
The underlined sequence corresponds to the codon of the COOH-terminal amino acid asparagine, the 20 next codon corresponding to the translation stop codon.
The nucleotides downstream correspond to sequence elements of the pUC19 polylinker. This clone comprising the pRPA-ML-711 sequence up to the translation termination site of mature maize EPSPS and followed by 25 sequences of the pUC 19 polylinker up to the Hindlll site was designated pRPA-ML-712.
b) Modification of the 5' end of pRPA-ML-712:
construction of pRPA-ML-715:
AP v ϋ Ο 8 8 6
The clone pRPA-ML-712 was cut with the restriction enzymes Pstl and Hindlll. The DNA resulting from these manipulations was separated byelectrophoresis on 0.8¾ LGTA/TBE agarose gel (ref.
CPMB). The gel fragment containing the 1.3-kbp PstlEcoRI insert was excised from the gel and purified according to the protocol described in section 5 above.
This insert was ligated in the presence of an equimolecular amount of each of the two partially 10 complementary- oligonucleotides of sequence:
Oligo 1: 5'-GAGCCGAGCTCCATGGCCGGCGCCGAGGAGATCGTGCTGCA-3'
Oligo 2: 5'-GCACGATCTCCTCGGCGCCGGCCATGGAGCTCGGCTC-3' as well as in the presence of plasmid pUC19 DNA digested with the restriction enzymes BamKT and
Hindlll.
Two μΐ of the ligation mixture were used to transform E. coli DH10B as described above in section £·Γ <r
5. After analysis of the plasmid DNA content of different clones according to the procedure described above in section 5, one of the clones possessing an approximately 1.3-kbp insert was retained for subsequent analyses. The sequence of the 5'-terminal end of the selected clone reveals that the DNA sequence in this region is the following: sequence of the pUCl9 polylinker from the EcoRI to the BamHI sites, followed by the sequence of the oligonucleotides used in the cloning, followTed by the remainder of the sequence present in pRPA-ML-712. This clone was designated pRPASGI I 0 / 8 6 /d
APO00886
ML-713. This clone possesses a methionine ATG codon included in an Ncol site upstream of the N-terminal alanine codon of mature EPSP synthase. Furthermore, the alanine and glycine codons of the N-terminal end have been preserved, but modified on the third variable base: initial GCGGGT gives modified GCCGGC.
The clone pRPA-ML-713 was cut with the restriction enzyme Hindlll, and the ends of this cleavage were rendered blunt by treatment with the
Klenow fragment of DNA polymerase I. A cleavage with restriction enzyme Sacl was then performed. The DNA resulting from these manipulations was separated by electrophoresis on 0.8¾ LGTA/TBE agarose gel (ref. CPMB). The gel fragment containing the 1.3-kbp
Hindlll-blunt ends/SacI insert was excised from the gel and purified according to the protocol described in section 5 above. This insert was ligated in the /· presence of plasmid pUC19 DNA digested with restriction enzyme Xbal, and the ends of this cleavage were rendered blunt by treatment with the Klenow fragment of
DNA polymerase I. A cleavage with the restriction enzyme Sacl was then performed. Two μΐ of the ligation mixture were used to transform E. coli DH10B as described above in section 5. After analysis of the plasmid DNA content of different clones according to the procedure described above in section 5, one of the clones possessing an approximately 1.3-kbp insert was retained for subsequent analyses. The sequence of the
AP/P/ 9 8/01 195
ΑΡϋ 0 0 8 8 6 terminal ends of the selected clone reveals that the
DNA sequence is the following: sequence of the pUCl9 polylinker from the EcoRI to Sacl sites, followed by the sequence of the oligonucleotides used in the cloning from which the 4 bp GATCC of the oligonucleotide 1 described above have been deleted, followed by the remainder of the sequence present in pRPA-ML-712 up to the Hindlll site and sequence of the pUC19 polylinker from Xbal to Hindlll. This clone was designated pRPA-ML-715.
7. Obtaining of a cDNA coding for a mutated maize EPSPS
All the mutagenesis steps were carried out with the Pharmacia U.S.E. mutagenesis kit according to the supplier's instructions. The principle of this mutagenesis system is as follows: plasmid DNA is denatured by heat and reassociated in the presence of a molar excess of, on the one hand the mutagenesis oligonucleotide, and on the other hand an oligonucleotide enabling a unique restriction enzyme site present in the polylinker to be eliminated. After the reassociation step, synthesis of the complementary strand is carried out by the action of T4 DNA polymerase in the presence of T4 DNA ligase and gene 32 protein in a suitable buffer which is supplied. The synthesis product is incubated in the presence of the restriction enzyme for which the site is assumed to have disappeared by mutagenesis. The E. coli strain
AP/P/ 9 8/01 195
ΑΓ 000886 possessing, in particular, the xnutS mutation is used as host for the transformation of this DNA. After growth in liquid medium, the total plasmid DNA is prepared and incubated in the presence of the restriction enzyme used before. After these treatments, E. coli strain
DH10B is used as host for the transformation. The plasmid DNA of the clones isolated is prepared, and the presence of the mutation introduced is verified by sequencing.
A)- modification of sites or sequences without in principle affecting the EPSPS-resistance character of maize to products which are competitive inhibitors of EPSP synthase activity: elimination of an internal Ncol site from pRPA-ML-715.
The pRPA-ML-715 sequence is numbered arbitrarily by placing the first base of the N-terminal alanine codon GCC at position 1. This sequence possesses an Ncol site at position 1217. The sitemodification oligonucleotide possesses the sequence:
5 '-CCACAGGATGGCGATGGCCTTCTCC-3'.
After sequencing according to the references given above, the sequence read after mutagenesis corresponds to that of the oligonucleotide used. The Ncol site has indeed been eliminated, and the translation into amino acids in this region preserves the initial sequence present in pRPA-ML-715.
This clone was designated pRPA-ML-716.
The 1340-bp sequence of this clone is
AP/P/ 9 8/01 195
ΑΡ κ ο ο 8 8 β presented in SEQ ID No. 2 and SEQ ID No. 3.
B)- sequence modifications enabling the
EPSPS-resistan.ee character of maize to products which are competitive inhibitors of EPSP synthase activity to be increased.
The following oligonucleotides were used:
a) mutation Thr 102 —> lie.
5'-GAATGCTGGAATCGCAATGCGGCCATTGACAGC-3'
b) mutation Pro 106 -+ Ser.
5 ' -GAATGCTGGAACTGCAATGCGGTCCTTGACAGC-3 ·
c) mutations Gly 101 -+ Ala and Thr 102 —> lie.
5'-CTTGGGGAATGCTGCCATCGCAATGCGGCCATTG-3'
d) mutations Thr 102 -+ lie and Pro 106 —> Ser.
5'-GGGGAATGCTGGAATCGCAATGCGGTCCTTGACAGC-3'
After sequencing, the sequence read after mutagenesis on the three mutated fragments is identical to the parent pRPA-ML-716 DNA sequence, with the exception of the mutagenized region which corresponds to that of the mutagenesis oligonucleotides used. These clones were designated: pRPA-ML-717 for the mutation
Thr 102 -+ lie, pRPA-ML-718 for the mutation Pro 106 -+
Ser, pRPA-ML-719 for the mutations Gly 101 —> Ala and
Thr 102 -+ lie and pRPA-ML-720 for the mutations Thr 102
-+ lie and Pro 106 -+ Ser.
AP/P/ 9 8/01 195
AP V Ο 0 8 8 6
The 1340-bp sequence of pRPA-ML-720 is presented in SEQ ID No. 4 and SEQ ID No. 5.
The 1395-bp Ncol-Hindlll insert is the basis of all the constructions used for the transformation of plants for the introduction of resistance to herbicides which are competitive inhibitors of EPSPS, and especially glyphosate resistance. This insert will be designated in the remainder of the description the maize EPSPS double mutant.
Example 2;
Glyphosate tolerance of the different mutants in vitro
2.a: Extraction of EPSP synthase The different EPSP synthase genes are introduced in the form of an Ncol-Hindlll cassette into the plasmid vector pTrc99a (Pharmacia, ref: 27-5007-01) cut with Ncol and Hindlll. Recombinant E. coli DH10B * bacteria overexpressing the different EPSP synthases are sonicated in 40 ml of buffer per 10 g of pelleted cells, and washed with this same buffer (200 mM TrisHC1 pH 7.8, 50 mM mercaptoethanol, 5 mM EDTA and 1 mM PMSF), to which 1 g of polyvinylpyrrolidone is added. The suspension is stirred for 15 minutes at 4°C and then centrifuged for 20 minutes at 27,000 g and 4°C.
Ammonium sulphate is added to the supernatant to bring the solution to 40% saturation with respect to ammonium sulphate. The mixture is centrifuged for 20 minutes at 27,000 g and 4°C. Ammonium sulphate is
7P/ 9 8/01 195
APO 0 0 8 8 6 added to the new supernatant to bring the solution to
70¾ saturation with respect to ammonium sulphate. The mixture is centrifuged for 30 minutes at 27,000 g and
4°C. The EPSP synthase present in this protein pellet is taken up in 1 ml of buffer (20 mM Tris-HCl pH 7.8 and 50 mM mercaptoethanol). This solution is dialysed overnight against two litres of this same buffer at
4°C.
2.b: Enzyme activity
The activity of each enzyme, as well as its glyphosate resistance, is measured in vitro over 10 minutes at 37°C in the following reaction mixture:
100 mM maleic acid pH 5.6, 1 mM phosphoenolpyruvate, mM shikimate 3-phosphate (prepared according to
Knowles P.F. and Sprinson D.B. 1970. Methods in Enzymol 17A, 351-352 from Aerobacter aerogenes strain ATCC 25597) and 10 mM potassium fluoride. The enzyme extract is added at the last moment after the addition of glyphosate, the final concentration of which varies from 0 to 20 mM.
The activity is measured by assaying the phosphate liberated according to the technique of Tausky H.A. and Shorr E. 1953. J. Biol. Chem. 202, 675685.
Under these conditions, the wild-type (WT) enzyme is already 85¾ inhibited at a glyphosate concentration of 0.12 mM. At this concentration, the mutant enzyme known as Serl06 is only 50¾ inhibited,
AP/P/ 9 8/01 195
V*
ΑΡ υ u o 8 8 6 and the other three mutants, Ilel02, Ilel02/Serl06 and
Alal01/Ilel02, show little or no inhibition.
The glyphosate concentration has to be multiplied by ten, that is to say 1.2 mM, in order to 5 produce a 50¾ inhibition of the mutant enzyme Ilel02, the mutants Ilel02/Serl06, Ala/Ile and Ala still not being inhibited.
It should be noted that the activity of the mutants Ala/Ile and Ala is not inhibited up to glyphosate concentrations of lOmM, and that that of the mutant Ilel02/SerlO6 is not reduced even if the glyphosate concentration is multiplied by 2, that is to say 20 mM.
Example 3;
Resistance of transformed tobacco plants
1-1- Transformation
The vector pRPA-RD-173 is introduced into
Ag-robacterium tumefaciens strain EHA101 (Hood et al.,
1987) carrying the cosmid pTVK291 (Komari et al.,
1986). The transformation technique is based on the procedure of Horsh et al. (1985).
1-2- Regeneration
The regeneration of PBD6 tobacco (source SEITA France) from leaf explants is carried out on a
Murashige and Skoog (MS) basal medium comprising 30 g/1 of sucrose as well as 200 pg/ml of kanamycin. The leaf explants are removed from plants cultivated in the greenhouse or in vitro and transformed according to the in σ>
o
A
Ar U J 0 8 8 6 leaf disc technique (Science, 1985, Vol. 227, pp. 12291231) in three successive steps: the first comprises the induction of shoots on a medium supplemented with 30 g/1 of sucrose containing 0.05 mg/1 of naphthylacetic acid (NAA) and 2 mg/1 of benzylaminopurine (BAP) for 15 days. The shoots formed during this step are then developed for 10 days by culturing on an MS medium supplemented with 30 g/1 of sucrose but not containing any hormone. Shoots which have developed are then removed and cultured on an MS rooting medium having half the content of salts, vitamins and sugar and not containing any hormone.
After approximately 15 days, the rooted shoots are transferred to soil.
1-3- Glyphosate resistance
Twenty transformed plants were regenerated and transferred to the greenhouse for the construction of pRPA-RD-173. These plants were treated in the greenhouse at the 5-leaf stage with an aqueous suspension of RoundUp corresponding to 0.8 kg of glyphosate active substance per hectare.
The results correspond to the observation of phytotoxicity indices recorded 3 weeks after treatment. Under these conditions, it is found that the plants transformed with the construction pRPA-RD-173 display very good tolerance, whereas the untransformed control plants are completely destroyed.
These results show clearly the improvement
AP/P/ 9 8/01 195
AP ν Ο ϋ 8 8 6 brought about by the use of a chimeric gene according to the invention for the same gene coding for glyphosate tolerance.
Example 4;
Transformation and selection of maize cells
BMS (Black Mexican Sweet) maize cells in an exponential growth phase are bombarded with the construction pRPA-RD-130 according to the principle and the protocol described by Klein et al. 1987 (Klein
T.M., Wolf E.D., Wu R. and Sandford J.C. (1987): High velocity microprojectiles for delivering nucleic acids into living cells, NATURE Vol. 327 pp. 70-73).
Two days after bombardment, the cells are transferred to the same medium containing 2 mM
N-(phosphomethyl) glycine.
After 8 weeks of selection on this medium, calluses which develop are selected, then amplified and <* ; analysed by PCR, and reveal clearly the presence of the chimeric OTP-EPSPS gene.
Cells not bombarded and grown on the same medium containing 2 mM N-(phosphomethyl)glycine are blocked by the herbicide and do not develop.
The transformed plants according to the invention may be used as parents for obtaining lines and hybrids having the phenotypic character corresponding to the expression of the chimeric gene introduced.
AP/P/ 9 8/01 195
AP U ΰ ϋ 8 8 6
Description of the constructions of the plasmids pRPA-RD-124: Addition of a nos polyadenylation signal to pRPA-ML-720 with creation of a cloning cassette containing the maize double mutant EPSPS gene (Thr 102 —> lie and Pro 10 6-4 Ser). pRPA-ML720 is digested with Hindlll and treated with the Klenow fragment of E. coli DNA polymerase I to produce a blunt end. A second digestion is performed with Ncol, and the EPSPS fragment is purified. The EPSPS gene is then ligated with purified pRPA-RD-12 (a cloning cassette containing the polyadenylation signal of nopaline synthase) to give pRPA-RD-124. To obtain the useful purified vector pRPA-RD-12, it was necessary for the latter to be digested beforehand with Sail, treated with Klenow DNA polymerase and then digested a second time with Ncol.
pRPA-RD-125: Addition of an optimized transit peptide (OTP) to pRPA-RD-124 with creation of a cloning cassette containing the EPSPS gene targeted on the plasmids. pRPA-RD-7 (European Patent Application EP 652 286) is digested with SphI, treated with T4 DNA polymerase and then digested with Spel, and the OTP fragment is purified. This OTP fragment is cloned into pRPA-RD-124 which has previously been digested with
Ncol, treated with Klenow DNA polymerase to remove the protruding 3' portion and then digested with Spel. This clone is then sequenced in order to ensure correct
AP/P/ 9 8/01195
AP 0 U ϋ 8 8 6 translational fusion between the OTP and the EPSPS gene. pRPA-RD-125 is then obtained.
pRPA-RD-130: Addition of the H3C4 maize histone promoter and of adhl intron 1 sequences of 5 pRPA-RD-123 (Patent Application EP 507 698) to pRPA-RD125 with creation of a cassette for expression in plants for the expression of the double mutant EPSPS gene in the tissues of monocotyledons. pRPA-RD-123 (a cassette containing the H3C4 maize histone promoter fused with the adhl intron 1) is digested with Ncol and Sad. The DNA fragment containing the promoter derived from pRPA-RD-123 is then purified and ligated with pRPA-RD-125 which has previously been digested with
Ncol and Sacl.
pRPA-RD-159: Addition of the H4A748
Arabidopsis histone double promoter (Patent Application EP* 5 07 698) to pRPA-RD-125 with creation of a cassette for expression in plants for the expression of the OTP-double mutant EPSPS gene gene in the tissues of dicotyledons. pRPA-RD-132 (a cassette containing the
H4A748 double promoter (Patent Application EP 507 698)) is digested with Ncol and Sacl. The purified promoter fragment is then cloned into [lacuna] which has been digested with Ecol and Sacl.
pRPA-RD-173: Addition of the H4A748 promoter-OTP-double mutant EPSPS gene gene of pRPA-RD159 to plasmid pRPA-BL-150A (European Patent
Application 508 909) with creation of an Agrobacterium
AP/P/ 9 8/01 195
AP 0 0 0 8 8 6 tumefaciens transformation vector. pRPA-RD-159 is digested with Notl and treated with Klenow polymerase. This fragment is then cloned into pRPA-BL-150A with
Smal.
AP/P/ 9 8/01 195
AP u υ u 8 8 6 sequence t.tsTtNc;
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Λγ'Μ.Γ-'ΗΤ
Lctirun, Micnel IX.· RicnJrt T “j Iιland. Ala in
I 111 TITLE OF INVENTION: S-enoi pyruvyishlfcinate-J-pnoapdaLe jynr.naae rut··, qane coda nt pout cette procaine ac plane» crane to meea concanant ca gana
Illl) HUMBER OF SEQUENCES: 5 llv) CORRESPONDENCE ADDRESS:
IA) ADDRESSEE: Francois Qaretlen
IB) STREET: 1420 rue Pirra Bailee
IC) CITY: Lyon Cadax 0»
IE) COUNTRY: France
IF) IIP: 69263
Iv) COMPUTER READABXE FORM:
(A) MEDIUM TYPE: Floppy diet
IB) COMPUTER: IBM PC coapatibla
IC) OPERATING SYSTEM: PC-DOSZMS-DOS
ID) SCTO4ARE: Patantln Ralaaaa 11.0, Varalon >1.25 (vi) CURRENT APPLICATION DATA:
IA) APPLICATION NUMBER:
IB) FILING DATE:
IC) CLASSIFICATION:
tviill ATTORNEY/AGENT INFORMATION:
(A) NAME: Qnratlan, Francois lixl TELECCWUNICATION INFORMATION:
(A) TELEPHONE: (331 72-29-26-46 (B) TELEFAX: (33)72-29-28-43
121 INFORMATION FOR SEQ ID NO:1:
11) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1713 base pairs (BI TYPE: nucleic acid (C) STRANDEDNESS: double I DI TOPOLOGY: linear
111) MOLECULE TYPE: cDNA (vll ORIGINAL SOURCE:
' I A) ORGANISM: 2ea nay» (B) STRAIN: Blact Mexican Ev»·: (FI TISSUE TYPE: Callua (vii) D-MEDIATF SOURCE:
(A) LIBRARY: laetoda gtlO IB) CLONE: pRPA-ML-711
AP/P/ 9 8/01 195
Ixil SEQUENCE DESCRIPTION: SEQ ID NO:1:
AATCAATTTC ACACAGGAAA CAGCIATGAC CATGATTACG AATTO3GGCC CGGGCGCGTG 60
ATCCSGCGGC GGCAGCGGCG GCGGCGGTGC AGGCGGGTGC C3AG&AGATC GTGCTSCRGC 120
CCATCAAGGA GATCTCOGGC ACOGTCAAGC TGOOGGGGTC CAAGTCGCTT 1CCAMXSGA 180
TCCTCCIACT OGCCGCLL'IS TCCGAGGGGA CAACAGTGGT TGATAACCTG CTOAACAGTO 240
AGGATGTCCA CTACATGCTC GGGGCCTTGA CGACTOTGG TCTCTCTGTC GAAGCGGACA 300
AAGCTGCCAA AAGAGCTGTA GTTGTTGGCT GTGGTGGAAA GTTCCCAGTT GAGGATGCIA 360
AAGAGGAAGT GCAGCTCTTC TTGGGGAATG CTGGAACTGC AATGCGGCCA TTGACACCAG 420
CTGTTACTGC TGCTGGTGGA AATGCAACTI ACGTGCTTGA. TGSAGTACCA AGAATGAGGG 480 αι’Λ'μΧτ^λτ Yf4zri*crh. tTrrtrranfiAT wanznct mmantt gttgatyctt tcctt.-x-cac ttact.-sttca cctcttottg tcaatccaat ccgaoggcta cctcctcgca agctcaagct <τστ·-·ζτττ; κτζΗ',ζκττζ tmterTwe tgccttgctg atcgcccctc ctttggctct Tf-'^iATirrc gagattgaaa tcattgataa attaatctcc attccgtacg
TCSAAATCAC ATTGAIIA7T0 ATCGAGCCTT TTGGTOTCAA AGCAGA3CAT TCTCATAGCT OGGACAGATT CTACATTAAG GGAGGTCAAA AATACAAGTC CCCTAAAAAT GCCTATG7TG
AAGGTGATGC CTCAAGOGCA AGCTATTTCT TGGCTGGTGC TGCAATTACT GGAGCGAJCTG TGACTGTGGA AGGTTGTGGC ACCACCAGTT TGCAGGGTGA TGTGAAGTTT GCTGAGGTAC TW3AGATGA7 GGGAGCGAAG GTTACATGGA CCGAGACTAJG CGTAACTGTT ACTGGCOCAC CGCGGGAGCC ATTIGGGAGG AAACACCTCA AGGCGATTGA TGTCAACATG AACAAGATGC CTGATGTCGC CATGACTCTT GCTGTGGTTG CCCTCTTTGC CGATGGCOCG ACAGCCATCA
SAfiACGTGGC TTCCTGGAGA GTAAAGGAGA CCGAGAGGAT GGTTGCGATC CGGACGGMC TAAOCAAGCI GGGAGCATCT GTTGACGAAG GGCCGGACTA CTGCA3CATC ACGCCGCCGG
AGAAGCTGAA CGTGACSGCG ATOGACAOGT ACGACGAOCA CAGGATGGCC ATGGOCTTCT (XCTTGCOGC CTGTGCCGAG GTOCCCGTCA CCATCCGGGA CCCTGGCTGC ACCCGGAAGA ccttccccga ctacttcgat gtgctgagca ctttcgtcaa gaattaataa agcgtgcgat
ACTACCACSC AGCTTGATTG AACTGA1AGG CTTGTGCTGA GGAAATACAT TTCT7TTGTT ctgti 'mcr ctttcacggg attaagi ttt gagtctgtaa cgttagttgt ttgtagcaag
TTTCTATTTC GGATCT7AAG 7TTGTGCACT GTAAGCCAAA TTTCA7TTCA AGAGTGGTTC
GTTGGAATAA 7AAGAA7AAT AAAT7ACGTT TCXGTGAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AACCCSGGAA TTC {21 INFORMATION FOR SEQ ID NO:2:
(11 SEQUENCE CHARACTERISTICS:
(Al LENGTH: 1340 beee pelr*
IB] TYPE: nucleic tcid (C) STRANDEDNESS: double (DI TOPOLOGY: linetr (11) MOLECULE TYPE: cDNA (Vi) ORIGINAL SOURCE:
(A) ORGANISM: let uyc
IB) STRAIN: BIect Mexican Sweet (vil) ΙΑΚΧΟ LATE SOURCE:
(BI CLONE: pRPA-«L-71« (lx) FEATURE:
(A) NAME/KEY: COS (BI LOCATION: «..1337
510 •100 bNO
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1620
1680
I Ί3
VP/ 9 8/01 195 <ί (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:
CCATG GOT GGC GCC GAG SAG ATC GTG CTG CAG CCC ATC AAG GAG ATC 47
Ala Gly Ale Clu Glu lie Vel Leu Gin Pro lie Lye Glu lie
10
TCC Ser IS GGC ACC Gly Thr CTC ΛΑ3 CTG COG GGG TCC Ser AAG Lye tog err TCC AAC CGG ATC 95
Val Lye Leu 20 Pre Gly Ser 25 Leu Ser Aen Arg lie 30
CTC CTA CTC ccc GGC CTG TCC GAG GGG ACA ACA. GTG GTT GAT AAC CTG 143
Leu Leu Leu Ala Ala Leu Ser Glu Gly Thr Thr Val Vel A*p A*n Leu
35 40 45
CTG AAC xrr GW GAT CTC CAC TAG XTG CTC GGG GCC TTG AGG ACT err 191
Leu A»n Ser Glu Aep Vel Hl* Tyr Het Leu Gly Ale Leu Arq Thr Leu
ΑΡϋϋ ΰ 8 8 6
SO 55 ήΟ
G.CT GL·/ CTC TCT CTC GAA OCT GAC AAA GCT GCC Ala AAA Lyy AGA GCT Arg Ala ;s CTA CTT GTT 2J’
L«-u Car h'l y.it Glu Ala Aup Lys Ala 70 7 a I Val Val
'>·>τ TCT OCT CCA AAG TTC CCA GTT GAG GAT GCT AAA OAO GAA CTG CAG Xd7
Gly Cys dO Gly liy Lys Phe Pro Vel Glu 35 Arp Ala Lyu Glu 90 G lu v.U Gin
CTC TTC TTG GSG AAT GCT GGA ACT GCA ATG CGG CCA TTG ACA GCA GCT 335
Leu 95 Phe Leu Gly Aen Ale 100 Gly Thr Ale Met Arg 105 Pro Leu Thr Ale Ala HO
gtt ACT GCT GCT GCT GGA AAT GCA ACT TAC CTG CTT GAT GGA CTA CCA 383
Val Thr Ale Ale Gly 115 Gly Asn Ale Thr Tyr 120 Vel leu Asp Gly Vel 125 Pro
AGA ATG AGG GAG AGA ccc ATT GGC GAC TTG GTT GTC GGA TTG AAG CAG 431
Arg Met Arg Glu 130 Arg Pro lie Gly XXP 135 Leu Vel Vel Gly Leu 140 Lys Gin
err GCT GCA GAT GTT GAT TCT TTC CTT GGC ACT GAC TGC CCA CCT CTT 47»
leu Gly Ale US Asp Val Asp Cys Phe Leu 150 Gly Thr Asp Cys 155 Pro Pro Vel
CTT CTC AAT GGA ATC GGA GGG CTA CCT GCT GGC AAG CTC AAG CTG TCT 527
Arg Vel 160 Aen Gly Xie Gly Gly leu Pro 165 Gly Gly Lys Val 170 Lys leu Ser
GGC TCC ATC ASC ACT CAG TAC TTG ACT GCC TTG CTG ATG GCT GCT CCT 57 5
Gly Π5 Ser Xie Ser Ser Gin 180 Tyr Leu Ser Ale leu 185 Leu Met Ala Ala Pro 190
TTG GCT CTT GSG GAT CTG GAG ATT GAA ATC ATT GAT AAA TEA ATC TCT 623
Lau Ale Leu Gly Asp 195 Vel Glu lie Glu Ila 200 lie Asp Lys Leu He 205 Ser
ATT CCT TAC GTC GAA ATG ACA TTG AGA TTG ATG GAG CCT TTT GCT CTG 671
lie Pro Tyr Vel 210 Glu Met Thr Leu Arg 215 Leu Met Glu Arg Phe 220 Gly Val
ΑΛΑ GCA GAS CAT TCT GAT AGC TGG GAC AGA TTC TAC ATT AAG GGA GCT 719
Lys Ale Glu 225 Hie Ser Asp Ser Trp Asp 230 Arg Phe Tyr He 235 Lys Gly Gly
CAA AAA TAC AAG TCC CCT AAA AAT GCC TAT CTT GAA GCT GAT GCC TCA 7 67
Gin Lys 240 Tyr Lye Ser Pro Lys Aen Ale 245 Tyr Vel Glu Gly 250 Asp Ain Ser
AGC GCA ASC TAT TTC TTG GCT GCT GCT GCA ATT ACT GGA GGG ACT GTG 815
Ser 255 Ala Ser Tyr Phe Leu 260 Ale Gly Ale Ala He 265 Thr Gly Gly Thr Vel 270
ACT CTG GAA GCT TCT GGC ACC ACC ACT TTG CAG GCT GAT CTG AAG y ye 863
Thr Vel Glu siy Cys 27 5 Gly Thr Thr Ser leu 280 Gin Gly Asp Val Lys 285 Phe
GCT GAG GCA CTG GAG ATG ATG GGA GCG AAG GTT ACA TGG ACC GAG ACT Sil
Ale Glu Vel Leu 250 Glu Met Met Gly Ale 295 Lys Vel Thr Trp Thr 300 Glu Thr
AGC CTA ACT CTT ACT GGC CCA COG CGG GAG CCA TTT GGG AGG AAA CSC 95S
Ser Val Thr 305 Vel Thr Sly Pro Pro Arg 310 Glu Pro Phe Gly 315 Arg •Lys Hie
CTC AAG GOG ATT GAT GTC AAC ATG AAC AAG ATG CCT GAT CTC GCT ATG 1007
Leu Lys 320 Ale Xie Asp Vel Aen Met Asn 325 Lys Met Pro Asp 330 Vel Ala Met
ACT CTT GCT GTG GTT GCC CTC TTT GCC GA7 GGC CCT ACA GOC ATC AGA 1055
Thr 335 Leu Ale Vel Vel Ale 340 Leu Phe Ala Asp Gly 345 Pro Thr Ale lie Arg 350
GAC GTG GCT TOC TGG AGA CTA AAG GAG ACC GAG AGG ATG GTT GCT ATC 1103
Asp Val Alt Ser Trp 355 Arg Vel Lys Glu Thr 360 Glu Arg Met Vel Ale 3«5 He
CTG ACT GAS CTA ACC AAG CTG GGA GCA TCT CTT GAG GAA GGG CCT GAC 1151
Arg Thr Glu Leu Thr Lys Leu Gly Ale Mr Val Glu Glu Gly Pro Asp
ΑΡ/Ρ/ 9 8/01 195
AP 0 u b 8 8 6
J7U J75 JUO GCC ATC GAC 104
TAC Tyr TOC ~Y~ ATC ATC ac; Thr ccc ccr; gag AAG CTG AAC GTG ACC Thr JV.
fie JH‘i lie Pru Prj Glu 300 Lys Leu Aen Ya L Ala tie Aep
AC” TAC GAC i*AC CAC AGG ATG GCC ATG CCC TTC T.— •CTT GCC GCC TGT 1217
•ri-.r rye Ad'p Aap HU Arj Met Ala Het Ale Phe Ser Leu All Ala Cye
400 405 410
gcc GAG GTC CCC GTC ACC atc ax GAG CCT GGG TGC ACC ax AAG ACC 1295
Ad* Glu v»l Pro V«1 Thr lie Arg A*p • Pro Gly cy« Thr Arg Ly» Thr
415 420 425 430
TTC ccc GAC TAC TTC GAT GTG CTG AGC ACT TTC GTC AAG AAT 1337
Ph· Pro A*p Tyr Ph· Ajrp Yll Leu Ser Thr Phe Vil Ly» Aen
<35 440
TAA 1340
121 INFORMATION tor S£Q 10 NO:3:
11) SEQUENCE CHARACTERISTICS:
(A) IXNGTH: : 444 μμΙλο acid*
(BI TYPE: anino icid
(DI TOPOLOGY: linear
(111 MOLECULE TYPE: protein
1x1) SEQUENCE DESCRIPTION, : SEQ XD »0:3:
Ala Gly Ala Glu Glu Xie Val Leu Gin Pro lie Ly» Glu Xie Ser Gly
1 5 10 15
Thr Val Ly» Leu Pro Gly Ser Ly» Ser Leu Ser Aen Arg lie Leu Leu
20 25 30
Leu All All Leu S«r Glu Gly Thr Thr Yll Vil Aep Am Leu Leu Aen
35 40 45
Ser Glu A»p Val His Tyr Met Leu Gly All Leu Arg Thr Leu Gly Leu
50 55 £0
Ser Vil Glu Ail Ly« All All Ly» Arg All Vil Vil Yll Gly Cye
€5 to 75 80
Gly Gly Ly» Phe Pro Vil Glu Alp All Lye Glu Glu Vil Gin Leu Phe
85 SO * 95
Leu Gly Am All Gly Thr All Met Arg Pro Leu Thr All Ala Vil Thr
100 105 no
All All Gly ciy Am All Thr Tyr Vil Leu Aep Gly Yll Pro Arg M»t
115 120 125
Arg Glu Arg Pro Xie Gly Aep Leu Yll Vil Gly Leu Ly» Gin Leu Gly
130 135 140
All Axp Vil Aep cy» Phe Leu Gly Thr Aep Cyw Pre Pro Vil Arg Vil
145 150 155 ICO
Am Gly 11» ciy Gly Leu Pro Gly Gly Lye Vil Ly» Leu Ser Gly Ser
165 170 175
lie Ser Ser Gin Tyr Leu S«r All Leu Leu Met Ala All Pro Leu Ala
l«0 its no
Leu Gly Aep Vil Glu Xie Glu Xie 11» Aep Ly» Leu Xie Ser Xie Pro
Hi 200 205
Tyr Vil Glu Met Thr Leu Arg Leu Met Glu Arg Phe ciy Yll Ly» Ala
210 215 220
Glu HI» Ser Aep Ser Trp Aip Arg Phe Tyr lie Ly» Gly Gly Gin Ly»
225 230 235 240
Tyr Ly» Ser Pro Ly» Am All Tyr Vil Glu Gly Aep Ala Ser Ser Ala
245 250 255
119 5 <O oo o
δζ
6Z
ΑΡ υ ο υ 8 8 6
-.- Γ Tyr Ph,· 1x^4 I HO Al.< Gly Al.i Ala tie 2*i 5 Thr Gly Gly Tnr V«L 270 Thr Va I
a·. Gly Cy: I '•I 7 Thr Thr Sur Luu 2 HO G In Gly Aep Val Ly- 2-JS Phe AJa Glu
.: * i u i j Me' Met Gly Ala I^S Lys Val Thr Trp Thr JOU G Lu The 3c r Va .
7hr JOS ν ί I The .7 I y Pro Pro 310 Arg Glu Pro Phe Gly 315 Arg Lys Hi* Leu Lye 320
Ala He Aep Vli Aen 325 Met Aen Lye Met Pro 330 Aep Val Ala Met Thr 335 Leu
All Val Val All 34 0 Leu Phe Ala Aep Gly 34 5 Pro Thr Ala Ila Arg Aep 350 Val
Ala Ser Trp 355 Arg Vil Lye Glu Thr 360 Glu Arg Met Vil All 3«5 lie Arg Thr
Glu Leu 370 Thr Lye Leu Gly Ala 375 Ser Vil Glu Glu Gly 380 Pro Aep Tyr Cye
He 38S He Thr Pro Pro Glu 390 Lye Leu Aen Val Thr 395 Ala lie Aep Thr Tyr 400
Aep Aep Hi* Arg Het 4 05 All Met Ala Phe Ser 410 Leu All Ala eye Ala 415 Glu
Val Pro v»l Thr 420 He Axg Aep Pro Gly 425 Cye Thr Arg Lye Thr 430 Phe Pro
Aep Tyr Phe Aep Vil Leu Ser Thr Phe Val Lye Aen
(35 440 [2) INFORMATION FOR SEQ ID NO:4:
I i I SEQUENCE CHARACTERISTICS :
(Al LENGTH: 13-40 baae pair»
IB} TYPE: nucleic acid (C) STRANDEDNESS: double (DI TOPOLOGY: linear (ill MOLECULE TYPE: CDMA (vli ORIGINAL SOURCE:
(Al ORGANISM: Zea rays , (BI STRAIN: Black Hexican Sweet
-, (vill IMMEDIATE SOURCE:
I IB) CLONE: pRPA-KL-720
:..// (lx) FEATURE:
(Al NAME/KEY: CDS (BI LOCATION: 6..1337
AP/P/ 9 8/01 195 (xil SEQUENCE DESCRIPTION: SEQ ID NO:4:
CCATG GCC GGC GCC GAG GAG ATC GIG CTG CAG CCC ATC AAG GAG ATC <7
All Gly Ala Glu Glu lie Val Leu Gin Pro lie Lye Glu He
IS 10
TCC GGC ACC GTC AAG CTG CCG GGG TCC AAG TOG CTT TCC AAC CGG ATC Ser Leu Ser Aen Arg He 95
Ser Gly 15 Thr Val Lye Leu 20 Pro Gly Ser Lye
25 30
CPC CTA CTC GCC GCC CTG TOC GAG GGG ACA ACA CTG CTT GAT AAC CTG 143
Leu Leu Leu Ala Ala Leu Ser Glu Gly Thr Thr Val Yal Aep Aen Leu
35 40 45
CTG AAC ACT GAG GAT GTC CAC TAC ATG CTC GGG GCC TTG AGG ACT CTT 111
Leu A*n Ser Glu Aep Val Hie Tyr Met Leu Gly Ala Leu Arg Thr Leu
50 55 CO
GCT CTC TCT GTC GAA GCG GAC AAA GCT GCC AAA AGA, GCT OTA CTT CTT 239
Gly Leu 3er Val Glu Ala Aep Lye All Ala Lye Arg Ala Val Val Val
«5 70 75
ΑΡυU Ο 8 8 6
(VC ·:ι·/ TGT C/u HI) vrr Gly GGA Gly AAG Ly:: TTC Pha CCA CTT <ia; Glu GAT Xup GCT Ala AAA CAC CAA GTG va I CAG Gin* 287
Pro •45 Val Ly-· no Glu Glu
CTZ TTC TTG <VJi AAT gct criA ATC GCA cry: TCC TTG ACA (ZIA GCT JJS
L»*u Pht· Luu ;iy Λ. i. Air 01 y [ lr All Met Ara S«r i^c-U Th r Al.n Ala
ϊ-. 1(10 LUS 110
rm ACT GCT GCT GGT GGA AAT GCA ACT TAC CTG CTT GAT GGA GTA CCA 38J
7« 1 Thr Ala Ala Gly Gly Aan Ala Thr Tyr Val Lau Aap Gly Val Pro
115 120 125
AGA ATG AGG GAG AGA ccc ATT GGC GAC TTG GTT GTC GGA TTG AAG CAG 431
Arg M«C Arg Glu Arg Pro Ila Gly Aap Leu Val Val Gly Lau Lya Gin
130 135 140
err GGT GCA GAT GTT GAT TGT TTC CTT GGC ACT GAC TGC CCA OCT GTT 479
Lau Gly Ala Aap Val A»P cy» Pha Lau Gly Thr Aap cy» Pro Pro Val
145 150 155
CCT GTC AAT GGA ATC GGA GGG CTA CCT GGT GGC AAG GTC AAG CTG TCT 527
Arg Val Aan Gly Ila Gly Gly lau Pro Gly Gly Lya Val Lya Lau Sar
160 165 170
GGC TCC ATC AGC AGT CAG TAC TTG AGT GCC TTG CTG ATG GCT GCT CCT 575
Gly 5ar Ila Sar Sar Gin Tyr Lau Sar Ala Lau Lau Mat Ala Ala Pro
Π5 180 185 190
TTG GCT CTT GGG GAT GTS GAG ATT GAA ATC ATT GAT AAA TTA ATC TCC 623 in
Lau Ala Lau Gly Aap Val Glu Ila Glu Ila Ila Aap Ly» Lau Ila Sar
195 200 205 U?
ATT CCG TAC GTC GAA ATG ACA TTG AGA TTG ATG GAG CCT TTT GGT GTG 671
11« Pro Tyr Val Glu Mat Thr lau Arg Lau Mac Glu Arg Pha Gly Val V—
210 215 220
O
AAA GCA GAG CAT TCT GAT AGC TGG GAC AGA TTC TAC ATT AAG GGA GGT 719
Lys Al* Glu Hia Sar Aap Sar Trp Aap Arg Phe Tyr Ila Lya Gly Gly
225 230 235 CO
CAA AAA TAC AAG TCC CCT AAA AAT GCC TAT GTT GAA GGT GAT GCC TCA 767
Gin Lya Tyr Lya Sar Pro Lya Ain Ala Tyr Val Glu Gly Aap Ala Sar
240 245 250 •v-
AGC GCA AGC TAT TTC TIG GGT GCT GCA ATT ACT GGA GGG ACT GTG 815
Sar Ala Sar Tyr Phe Lau Ala Gly Ala Ala Ila Thr Gly Gly Thr Val 6?
255 260 265 270
ACT GTG GAA GGT TGT GGC ACC ACC AGT TTG CAG GGT GAT GTG AAG TTT 863 <4
Thr V«1 Glu Gly Cya Gly Thr Thr Sar Lau Gin Gly Aap Val Lya Pha -
275 260 265
GCT GAG GTA CTG GAG ATG ATG GGA GCG AAG GTT ACA TGG ACC GAG ACT 911
Al* Glu Val Lau Glu Mat Mac Gly Ala Lya Val Thr Trp Thr Glu Thr
290 295 300
AGC GTA ACT GTT ACT GGC CCA CCG CGG GAG CCA TTT GGG AGG AAA CAC 959
Sar Val Thr Val Thr Gly Pro Pro Arg Glu Pro Pha Gly Arg Lya His
305 310 315
CTC AAG GCG ATT GAT GTC AAC ATG AAC AAG ATG CCT GAT GTC GCC ATG 1007
Lau Lya Ala Ila Aap Val Aan Mac Aan Lya Mat Pro Aap Val Ala Mat
320 325 330
ACT err GCT GTG GTT GCC CTC TTT GCC GAT GGC CCG ACA GCC ATC AGA 1055
Thr Lau Ala Val Val Ala Lau Pha Ala Aap Gly Pro Thr Ala Ila Arg
335 340 345 350
GAG GTG GCT TCC TGG AGA GTA AAG GAG ACC GAG AGG ATG GTT GCG ATC 1103
Aap Val Ala Sar Trp Arg Val Lya Glu Thr Glu Arg Hat Val Ala He
355 360 365
CGG ACG GAG CTA ACC AAG CTG GGA GCA TCT GTT GAG GAA GGG CCG GAC 1151
Arg Thr Glu Lau Thr Lya Lau Gly Ala Sar Val Glu Glu Gly Pro A*P
370 375 380
TAC TGC ATC ATC AGS CCG CCG GAS AAG CTG AAC GTG ACS GCG ATC GAC 1199
Tyr cy» Ila Ila Thr Pro Pro Glu Lya Lau Aan Val Thr Ala Ila A*P
385 390 395
AP U Ο 0 8 8 6
act; Thr TAC Tyr ion GAC <yc CAC ADO Arg AW Hwt 405 GCG Ala AW N«t GCC Ala TTC TCC CTT CCC CCC TGT
A.p Phe Ser 410 Leu Ala Ala Cya
OCT OAT, GTC CCC 'TTC ACC ATC COG GAC CCT G<W TOC ACC COO AAG ACC
Αι ι Glu Val Pr-J v.it Thr lie Arg A^p Pro Gly Cya Thr Arg Lys Thr
4’.5 •120 4 25 4 30
TTC CCC GAC TAC TTC GAT GTG CTG AGC ACT TTC GTC AAG AAT
Phe Pro Aep Tyr Pti* Aap Val Leu s«r Thr Phe Val Lya Aan
4 JS 440
ΤΑΑ
121 INFORMATION FOR SEQ ID NO:5:
III SEQUENCE CHARACTERISTICS:
IAI LENGTH: : 444 anino
(Bl TYPE: anlno acid
10) TOPOLOGY: linear
111) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: : SEQ ID MO:5:
Ala Gly Ala Glu Glu lie Val Leu Gin Pro 11« Ly» Glu Ila S»r Gly
1 5 10 IS
Thr Val Ly» Leu Pro Gly Ser Ly» Ser Leu Ser Asn Arg 11» Leu Leu
20 25 30
Lau Ala Ala Leu Ser GLu Gly Thr Thr Val Val Aap Am Leu Leu Aan
35 40 45
S«r Glu Aap Val His Tyr Het Leu Gly Ala Leu Arg Thr Lau Sly Lau
50 SS 60
s«r Val Glu Ala Ajrp Ly» Ala Ala Ly» Arg Ala Val Val Val Gly Cya
65 70 75 30
Gly Gly Lya Phe Pro Val Glu Aap Ala Ly» Glu Glu Val Gin Leu Phe
35 90 95
Leu Gly Aan Ala Gly lie Ala Met Arg Ser leu Thr Ala Ala Val Thr
100 105 110
Ala Ala Gly Gly Aan Ala Thr Tyr Val Leu Aap Gly Val Pro Arg Met
115 120 125
Arg Glu Arg Pro Ila Gly Aap Leu Val Val Gly leu Lys Gin leu Gly
130 135 140
Ala Aap Val Aap Cya Phe Leu Gly Thr Aap Cya Pro Pro Val Arg Val
145 150 155 160
Am Gly lie Gly Gly Leu Pro Gly Gly Ly» Val Lys leu Ser Gly Ser
165 170 175
He Ser Ser Gin Tyr Leu Ser Ala Leu Leu Met Ala Ala Pro Leu Ala
ISO 185 190
Leu Gly Aep Val Glu lie Glu lie lie Aap Lya Leu He Ser lie Pro
1S5 200 205
Tyr Val Glu Het Thr Leu Arg Leu Ket Glu Arg Phe Gly Val Ly» Ala
210 215 220
Glu Hie Ser Aap Ser Trp Aap Arg Phe Tyr Π» Lyw Gly Gly Gin Lye
225 230 235 240
Tyr Lye Ser Pro Lya Aan Ala Tyr Val Glu aly Aap Ala Ser Ser Ala
245 250 255
Ser Tyr Phe Leu Ala Gly Ala Ala lie Thr Gly Gly Thr Val Thr Val
260 265 270
Glu Gly Cy» Gly Thr Thr Ser Leu Gin Gly Aap Val Ly» Phe Ala Glu
275 280 285
1247
12®5
1JJ7
134 0
ΑΡ/’Ρ/ 98/0119 5
APO00886
Va I Luu ZOO Glu Met Her Gly Ala 295 Lyw Val Thr Trp Thr 300 Glu Thr S«r Va I
Thr JO*. 7-11 Thr Gly Pro Pro J10 An Glu Pro Pho Gly J15 Arg Lyo His Leu Ly; J20
All . ir A-P 71 . Ann J25 Hot Asn Lys Hot Pro JJ0 Asp Val Ala Het Thr JJ5 Leu
Al· Val V· I Ala J<0 L«u Ph· Ala Asp Gly 3<5 Pro Thr Ala II· Arg 350 Asp Val
Alt s« r Trp 355 Arg Val Lys Glu Thr 380 Glu Arg Het Val Ala 385 XI· Arg Thr
Glu Lau 370 Thr Lys Leu Gly Ala 375 S«r Val Glu Glu Gly 380 Pro Asp Tyr Cyw
II· 385 II· Thr Pro Pro Glu 390 Ly» Lau Asn V«1 Thr 395 Ala II· Asp Thr Tyr 400
Asp Asp His Arg Net <05 Ala Het Ala Ph· S«r <10 Lau Ala Ala cys Ala <15 Glu
Val Pro V«1 Thr <20 II· Arg Asp Pro Gly Cys *25 Thr Arg Lys Thr <30 Ph· Pro
Asp Tyr Ph· <35 Asp Val Lau Sar Thr <<0 Ph· Val Lys Asn
AP/P/ 9 8/01 195

Claims (15)

1. A DNA sequence coding for a mutated 5-enolpyruvylshikimate-35 phosphate synthase (EPSPS), characterized in that the EPSPS is from maize and comprises a first mutation consisting in the threonine 102 -> isoleucine substitution and a second mutation consisting in a substitution of proline 106 by serine.
2. DNA sequence coding for a mutated 5-enolpyruvylshikimate-310 phosphate synthase (EPSPS), characterised in that it comprises the coding region of the DNA sequence represented in SEQ ID No. 2, comprising a first mutation consisting in the threonine 102 isoleucine substitution and a second mutation consisting in a substitution of proline 106 by serine.
15
3. DNA sequence coding for a mutated 5-enolpyruvylshikimate -3phosphate synthase (EPSPS), characterised in that it comprises the coding sequence of SEQ ID No. 4.
4. A mutated 5-enolpyruvylshikimate -3-phosphate synthase (EPSPS),
20 characterized in that the EPSPS is maize and comprises a first mutation consisting in
-¾ the substitution of threonine 102 by isoleucine and a second mutation consisting in a
V.' substitution of proline 106 by serine.
5. A mutated 5-enolpyruvylshikimate -3-phosphate synthase (EPSPS),
25 characterized in that it comprises the peptide sequence of SEQ ID No. 5.
6. Chimeric gene comprising a coding sequence as well as regulatory elements at position 5' and 3' which are heterologous and capable of functioning in plants, characterized in that it comprises as coding sequence at least one sequence
30 according to any one of claims 1 to 3.
ΑΡ/ΓΖ 98/01195
ΑΡ ο Ο ο 8 8 6
-387. Chimeric gene according to claim 6, characterized in that it comprises a plant virus promoter.
8. Chimeric gene according to claim 6, characterized in that it 5 comprises a plant promoter.
9. Chimeric gene according to claim 8 in which the plant promoter is α-tubulin, histone, intron or actin.
10 10. Chimeric gene according to any one of claims 6 to 9, characterised i- .¾ ’to in that it comprises a zone coding for a transit peptide.
11. Chimeric gene according to claim 10, characterized in that it comprises one or more transit peptide units.
12. Vector for the transformation of plants, characterized in that it comprises at least one gene according to any one of claims 6 to 11.
13. Plant cell, characterized in that it comprises at least one gene 20 according to any one of claims 6 to 11.
25
14 . Method for the production of plants with improved tolerance to a herbicide having EPSP synthase as its target, characterised in that plant cells or protoplasts are transformed with a gene according to any one of claims 6 to 11, and in that the transformed cells are subjected to a regeneration.
30
15 Method as claimed in claim 14, characterised in that the plants with improved tolerance.are used for the preparation of hybrid lines.
ΑΡ ϋΟ ϋ 8 8 6
16. Method of treatment of plants with a herbicide having EPSPS as its target, characterized in that the herbicide is applied to plants comprising plant cells according to Claim 13.
1 7. Method according to claim g 6, characterized in that glyphosate or a glyphosate precursor is applied.
APAP/P/1998/001195A 1995-07-19 1996-07-18 Mutated 5-enol pyruvylshikimate-3-phosphate synthase, gene coding for said protein and transformed plants containing said gene. AP886A (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
FR9508979A FR2736926B1 (en) 1995-07-19 1995-07-19 5-ENOL PYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE MUTEE, CODING GENE FOR THIS PROTEIN AND PROCESSED PLANTS CONTAINING THIS GENE
PCT/FR1996/001125 WO1997004103A2 (en) 1995-07-19 1996-07-18 Mutated 5-enol pyruvylshikimate-3-phosphate synthase, gene coding for said protein and transformed plants containing said gene

Publications (2)

Publication Number Publication Date
AP9801195A0 AP9801195A0 (en) 1998-03-31
AP886A true AP886A (en) 2000-11-03

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