ATE377656T1 - Methode zum nachweis von mikroorganismen - Google Patents

Methode zum nachweis von mikroorganismen

Info

Publication number
ATE377656T1
ATE377656T1 AT01953689T AT01953689T ATE377656T1 AT E377656 T1 ATE377656 T1 AT E377656T1 AT 01953689 T AT01953689 T AT 01953689T AT 01953689 T AT01953689 T AT 01953689T AT E377656 T1 ATE377656 T1 AT E377656T1
Authority
AT
Austria
Prior art keywords
sample
target sequence
present
universal target
universal
Prior art date
Application number
AT01953689T
Other languages
English (en)
Inventor
Neil Hunter
Nicholas Jacques
Fjelda Martin
Mangala Nadkarni
Original Assignee
Univ Sydney
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ Sydney filed Critical Univ Sydney
Application granted granted Critical
Publication of ATE377656T1 publication Critical patent/ATE377656T1/de

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
AT01953689T 2000-07-28 2001-07-27 Methode zum nachweis von mikroorganismen ATE377656T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
AUPQ9090A AUPQ909000A0 (en) 2000-07-28 2000-07-28 A method of detecting microorganisms

Publications (1)

Publication Number Publication Date
ATE377656T1 true ATE377656T1 (de) 2007-11-15

Family

ID=3823148

Family Applications (1)

Application Number Title Priority Date Filing Date
AT01953689T ATE377656T1 (de) 2000-07-28 2001-07-27 Methode zum nachweis von mikroorganismen

Country Status (9)

Country Link
US (1) US7303870B2 (de)
EP (1) EP1311706B1 (de)
JP (1) JP5139620B2 (de)
AT (1) ATE377656T1 (de)
AU (3) AUPQ909000A0 (de)
CA (1) CA2417419A1 (de)
DE (1) DE60131284T2 (de)
NZ (1) NZ524496A (de)
WO (1) WO2002010444A1 (de)

Families Citing this family (89)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
RU2329305C2 (ru) * 2001-03-01 2008-07-20 Дзе Джонс Хопкинс Юниверсити Количественный анализ, позволяющий одновременно обнаруживать и идентифицировать бактериальные инфекции
WO2004060278A2 (en) 2002-12-06 2004-07-22 Isis Pharmaceuticals, Inc. Methods for rapid identification of pathogens in humans and animals
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US20040121309A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
ES2193873B1 (es) * 2002-03-22 2004-08-16 Carlos Muñoz Ruiz Metodo para la deteccion de presencia bacteriana en un sujeto.
AU2003288018A1 (en) * 2002-11-20 2004-06-15 Pharmacia Italia S.P.A. Method for the detection of microorganisms in pharmaceutical products
EP1473370A3 (de) * 2003-04-24 2005-03-09 BioMerieux, Inc. Gattungs-, gruppen-, art- und/oder stammspezifische 16S rDNA-Sequenzen
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8242254B2 (en) 2003-09-11 2012-08-14 Ibis Biosciences, Inc. Compositions for use in identification of bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8163895B2 (en) 2003-12-05 2012-04-24 Ibis Biosciences, Inc. Compositions for use in identification of orthopoxviruses
JP2005229838A (ja) * 2004-02-17 2005-09-02 Sapporo Breweries Ltd 偏性嫌気性グラム陰性菌の検出・識別方法
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
ES2641832T3 (es) 2004-05-24 2017-11-14 Ibis Biosciences, Inc. Espectrometría de masas con filtración de iones selectiva por establecimiento de umbrales digitales
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
JP3916086B2 (ja) * 2004-06-29 2007-05-16 ソニー株式会社 ハイブリダイゼーションなどの相互作用を検出する方法及び検出部、該検出部を備えるバイオアッセイ用基板、ハイブリダイゼーションなどの相互作用を検出する装置、並びに試薬キット
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
US7662562B2 (en) 2004-08-10 2010-02-16 Becton, Dickinson And Company Method for rapid identification of microorganisms
KR100763906B1 (ko) * 2004-12-23 2007-10-05 삼성전자주식회사 9 종의 박테리아의 표적 서열을 특이적으로 증폭할 수 있는 프라이머 세트 및 상기 9 종의 박테리아 중 각 표적 서열에 특이적으로 혼성화하는 프로브 올리고뉴클레오티드
KR101409193B1 (ko) 2005-01-31 2014-06-19 가부시키가이샤 야쿠르트 혼샤 알 알엔에이를 표적으로 한 미생물의 정량적 해석방법
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
US20060205040A1 (en) 2005-03-03 2006-09-14 Rangarajan Sampath Compositions for use in identification of adventitious viruses
EP1904655A2 (de) 2005-07-21 2008-04-02 Isis Pharmaceuticals, Inc. Verfahren zur raschen identifizierung und quantifizierung von nukleinsäurevarianten
CA2625414A1 (en) * 2005-10-17 2007-04-26 Gen-Probe Incorporated Compositions and methods to detect legionella pneumophila nucleic acid
US8609829B2 (en) 2005-10-17 2013-12-17 Gen-Probe Incorporated Compositions and methods to detect Legionella pneumophila nucleic acid
US20070269813A1 (en) * 2005-11-03 2007-11-22 Dewhirst Floyd E Methods and arrays for identifying human microflora
US8129109B2 (en) * 2006-03-31 2012-03-06 Canon Kabushiki Kaisha Probe, probe set, probe-immobilized carrier, and genetic testing method
EP2010679A2 (de) 2006-04-06 2009-01-07 Ibis Biosciences, Inc. Zusammensetzungen für die identifizierung von pilzen
US7452700B2 (en) * 2006-04-14 2008-11-18 Pioneer Hi-Bred International, Inc. Methods for identifying novel pesticidal gene homologues
US7771941B2 (en) * 2006-06-23 2010-08-10 University Of South Florida Method for determining the specific growth rate of distinct microbial populations in a non-homogeneous system
MX2009000774A (es) * 2006-07-21 2009-02-17 Pioneer Hi Bred Int Gen novedoso de bacillus thuringiensis con actividad lepidoptera.
AT504194B1 (de) 2006-09-07 2008-07-15 Oesterr Rotes Kreuz Bakteriennachweis
AU2007353877B2 (en) 2006-09-14 2012-07-19 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
JP5680304B2 (ja) 2007-02-23 2015-03-04 アイビス バイオサイエンシズ インコーポレイティッド 迅速な法医学的ｄｎａ分析法
AU2008201391A1 (en) * 2007-03-30 2008-10-16 Gc Corporation A method for measuring the number of oral lactobacillus, and a PCR primers-probe set used for the same
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
EP1997906A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Lactobacillus
US9376722B2 (en) * 2008-02-08 2016-06-28 Colgate-Palmolive Company Oral care methods and systems
JP2011527177A (ja) * 2008-04-01 2011-10-27 メタメトリックス クリニカル ラボラトリー 胃腸微生物叢の監視プロセスおよび方法
US8534447B2 (en) 2008-09-16 2013-09-17 Ibis Biosciences, Inc. Microplate handling systems and related computer program products and methods
WO2010033627A2 (en) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
EP2349549B1 (de) 2008-09-16 2012-07-18 Ibis Biosciences, Inc. Mischpatronen, mischstationen und verwandte ausrüstungen, und system
EP2358908B1 (de) 2008-11-14 2014-01-08 Gen-Probe Incorporated Zusammensetzungen und verfahren für den nachweis von campylobacter-nukleinsäure
EP2396803A4 (de) 2009-02-12 2016-10-26 Ibis Biosciences Inc Ionisationssondenanordnungen
US9719083B2 (en) 2009-03-08 2017-08-01 Ibis Biosciences, Inc. Bioagent detection methods
US9393564B2 (en) 2009-03-30 2016-07-19 Ibis Biosciences, Inc. Bioagent detection systems, devices, and methods
EP2454000A4 (de) 2009-07-17 2016-08-10 Ibis Biosciences Inc Systeme zur identifizierung von biowirkstoffen
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
WO2011014811A1 (en) 2009-07-31 2011-02-03 Ibis Biosciences, Inc. Capture primers and capture sequence linked solid supports for molecular diagnostic tests
EP3098325A1 (de) 2009-08-06 2016-11-30 Ibis Biosciences, Inc. Basenzusammensetzungen ohne massenbestimmung zur nukleinsäureerkennung
EP2957641B1 (de) 2009-10-15 2017-05-17 Ibis Biosciences, Inc. Multiple-displacement-amplifikation
GB2475226A (en) 2009-11-03 2011-05-18 Genetic Analysis As Universal Prokaryote 16S ribosome PCR primer pair
EP4276190A3 (de) 2009-12-03 2023-12-27 Quest Diagnostics Investments Incorporated Verfahren zur diagnose bakterieller vaginose
WO2011103274A1 (en) * 2010-02-17 2011-08-25 Gen-Probe Incorporated Compositions and methods to detect atopobium vaginae nucleic acid
US9758840B2 (en) 2010-03-14 2017-09-12 Ibis Biosciences, Inc. Parasite detection via endosymbiont detection
KR101158647B1 (ko) * 2010-05-27 2012-06-26 울산대학교 산학협력단 이중 실시간 중합효소연쇄반응법과 융해곡선분석을 이용하는 결핵균과 항산성비결핵균의 검출 방법
US20130005593A1 (en) * 2011-03-09 2013-01-03 Teles Flavia R F RNA-Oligonucleotide Quantification Technique for the Enumeration of Uncultivated Bacterial Species
WO2013101935A1 (en) * 2011-12-27 2013-07-04 Ibis Biosciences, Inc. Bioagent detection oligonucleotides
KR101497977B1 (ko) * 2012-07-04 2015-03-11 서울대학교산학협력단 총세균 검출용 ｄｎａ 탐침자
DK2909339T3 (en) 2012-10-18 2018-08-13 Idexx Lab Inc Kits comprehensive controls for nucleic acid amplification
CN103088145B (zh) * 2013-01-25 2014-10-08 中国海洋大学 一种紫云蛤科贝类线粒体16S rRNA基因的扩增引物
US20140258299A1 (en) * 2013-03-07 2014-09-11 Boris A. Vinatzer Method for Assigning Similarity-Based Codes to Life Form and Other Organisms
WO2014165810A2 (en) * 2013-04-05 2014-10-09 Akins Robert A Systems and methods to assess microbiomes and treatments thereof
KR102084217B1 (ko) * 2013-07-24 2020-03-03 솔젠트 (주) 중합효소연쇄반응 및 실시간중합효소연쇄반응을 이용한 세포치료제 또는 생물학적 의약품에 오염되는 세균을 검출하는 방법 및 이 방법에 사용하기 위한 키트
US10392670B2 (en) 2013-07-25 2019-08-27 Dch Molecular Diagnostics, Inc. Methods and compositions for detecting bacterial contamination
CN104419703B (zh) * 2013-09-11 2017-10-24 中国科学院上海生命科学研究院 一种高通量快速检测常见致病菌的方法
JP6299660B2 (ja) * 2014-05-12 2018-03-28 三菱ケミカル株式会社 菌叢解析方法と菌叢解析用デバイス
US9995758B1 (en) 2014-10-31 2018-06-12 Western Autotroph Company LLC Methods and systems for controlling oxidative stress in humans and animals
US10428370B2 (en) * 2016-09-15 2019-10-01 Sun Genomics, Inc. Universal method for extracting nucleic acid molecules from a diverse population of one or more types of microbes in a sample
US11959125B2 (en) 2016-09-15 2024-04-16 Sun Genomics, Inc. Universal method for extracting nucleic acid molecules from a diverse population of one or more types of microbes in a sample
EP3625358A4 (de) * 2017-05-17 2021-02-24 Microbio Pty Ltd Biomarker und verwendungen davon
CN108690864A (zh) * 2017-10-31 2018-10-23 中山大学 一种粪便样本中菌群稳态评价方法及在结直肠癌筛查中的应用
WO2019088272A1 (ja) 2017-11-02 2019-05-09 三菱ケミカル株式会社 臨床的指標と関連性のある細菌群の情報を利用した口腔内検査方法
MX2020009985A (es) * 2018-03-26 2020-10-12 Buckman Laboratories Int Inc Metodos para cuantificar la carga biologica en sustancias.
US11358137B2 (en) 2018-12-26 2022-06-14 Industrial Technology Research Institute Tubular structure for producing droplets and method for producing droplets
WO2021216863A1 (en) * 2020-04-22 2021-10-28 The Regents Of The University Of California Universal primers for detection of bacteria, fungi and eukaryotic microorganisms
CN112280840A (zh) * 2020-09-29 2021-01-29 杭州迪安医学检验中心有限公司 一种分枝杆菌检测鉴定的试剂盒及其检测方法
CN112626244B (zh) 2020-12-30 2022-03-29 山东省眼科研究所 眼科临床微生物快速检测用探针、芯片、引物、试剂盒和应用
AU2022267355A1 (en) 2021-04-30 2023-10-19 Root Applied Sciences Inc. Device for collecting material from air
WO2022261365A1 (en) * 2021-06-11 2022-12-15 Alfred E. Mann Institute For Biomedical Engineering At The University Of Southern California Primers and methods for microbial detection and quantification of porphyromonas in a sample
CN113658640B (zh) * 2021-07-14 2023-07-28 北京大学 一种淡水生态系统健康评价方法
JP2024062123A (ja) * 2022-10-24 2024-05-09 公益財団法人東洋食品研究所 芽胞を含む芽胞形成細菌の核酸抽出方法、芽胞形成細菌の検出方法および芽胞形成細菌の検出用組成物

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993009250A1 (en) * 1991-11-01 1993-05-13 Adelaide Children's Hospital Solid phase amplification process
DE19732086C2 (de) * 1997-07-25 2002-11-21 Univ Leipzig Verfahren zur quantitativen Bestimmung von Eubakterien
US5985569A (en) * 1997-09-26 1999-11-16 Becton, Dickinson And Company Primers for amplification of a genus specific sequence of the mycobacterium 16S rRNA gene
DE19822108A1 (de) * 1998-05-12 2000-02-03 Schering Ag Verfahren zur Detektion von Mikroorganismen in Produkten, insbesondere in Arzneimitteln und Kosmetika

Also Published As

Publication number Publication date
EP1311706B1 (de) 2007-11-07
US7303870B2 (en) 2007-12-04
EP1311706A4 (de) 2004-11-03
WO2002010444A1 (en) 2002-02-07
AU7618001A (en) 2002-02-13
CA2417419A1 (en) 2002-02-07
US20040072242A1 (en) 2004-04-15
AU2001276180B2 (en) 2007-05-10
JP5139620B2 (ja) 2013-02-06
AUPQ909000A0 (en) 2000-08-24
EP1311706A1 (de) 2003-05-21
JP2004504069A (ja) 2004-02-12
DE60131284T2 (de) 2008-09-04
NZ524496A (en) 2004-07-30
DE60131284D1 (de) 2007-12-20

Similar Documents

Publication Publication Date Title
DE60131284D1 (de) Methode zum nachweis von mikroorganismen
Anuj et al. Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genes
Meays et al. Source tracking fecal bacteria in water: a critical review of current methods
Osek et al. Listeria monocytogenes in foods—From culture identification to whole‐genome characteristics
Lawson et al. Detection of campylobacter in gastroenteritis: comparison of direct PCR assay of faecal samples with selective culture
Pal et al. Rapid detection and differentiation of Erysipelothrix spp. by a novel multiplex real‐time PCR assay
NO326359B1 (no) Fremgangsmate ved pavisning av forskjellige nukleotidsekvenser i en enkelt prove samt sett for utforelse av fremgangsmaten
CN117987579B (zh) 一种检测鸡白痢沙门菌的引物和探针、检测体系和用途
JP5610416B2 (ja) バイオオーグメンテーションにおける環境影響の評価方法
WO1995033854B1 (en) Use of a specific marker for detection of salmonella with pcr
CN104232783B (zh) 牛种布氏菌弱毒疫苗株a19的快速检测方法
Kageyama et al. Yersinia pseudotuberculosis infection in breeding monkeys: detection and analysis of strain diversity by PCR
JP2003061675A (ja) セレノモナス属菌検出のための核酸プローブ、およびビール混濁細菌の検出方法
Oh et al. Simultaneous identification of seven foodborne pathogens and Escherichia coli (Pathogenic and Nonpathogenic) using capillary electrophoresis–based single-strand conformation polymorphism coupled with multiplex PCR
US20170081709A1 (en) Method for detecting escherichia coli and carrier for detecting escherichia coli
JP3525259B2 (ja) ペクチネータス属菌の検出
ATE431432T1 (de) Verfahren zum nachweis von mycobacterium tuberculosis
Salati et al. A sensitive FRET probe assay for the selective detection of Mycobacterium marinum in fish
Manome et al. Quantification of potato common scab pathogens in soil by quantitative competitive PCR with fluorescent quenching‐based probes
JP5504469B2 (ja) 炭化水素分解菌の挙動解析方法及び土壌浄化方法
JP2005065605A (ja) 微生物群集の解析方法
JP2005006556A (ja) ビール有害菌の検出方法
KR100965289B1 (ko) １６Ｓ ｒＤＮＡ 유전자를 이용한 보르데텔라근연종으로부터 보르데텔라 페르투시스 감별을 위한 ＰＣＲ기법 및 이를 위한 ＰＣＲ 프라이머
Sun et al. A CRISPR/Cas12a-based DNAzyme chemiluminescence platform for rapid detection of all Streptococcus suis and individually S. suis serotypes 7 and 9
Saha et al. Quantitative real-time PCR detection of Pseudomonas oleovorans subsp. lubricantis using TaqMan-MGB assay in contaminated metalworking fluids

Legal Events

Date Code Title Description
RER Ceased as to paragraph 5 lit. 3 law introducing patent treaties