ATE398808T1 - Systeme und verfahren zum schliessen auf biologische netzwerke - Google Patents

Systeme und verfahren zum schliessen auf biologische netzwerke

Info

Publication number
ATE398808T1
ATE398808T1 AT03751934T AT03751934T ATE398808T1 AT E398808 T1 ATE398808 T1 AT E398808T1 AT 03751934 T AT03751934 T AT 03751934T AT 03751934 T AT03751934 T AT 03751934T AT E398808 T1 ATE398808 T1 AT E398808T1
Authority
AT
Austria
Prior art keywords
networks
systems
infer
network
methods described
Prior art date
Application number
AT03751934T
Other languages
English (en)
Inventor
Vipul Periwal
Original Assignee
Gene Network Sciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gene Network Sciences Inc filed Critical Gene Network Sciences Inc
Application granted granted Critical
Publication of ATE398808T1 publication Critical patent/ATE398808T1/de

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
    • G01N33/5091—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing the pathological state of an organism
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701—Details
    • G01N2333/4739—Cyclin; Prad 1
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00—Data processing: database and file management or data structures
    • Y10S707/99941—Database schema or data structure
    • Y10S707/99943—Generating database or data structure, e.g. via user interface

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical & Material Sciences (AREA)
  • Physiology (AREA)
  • Urology & Nephrology (AREA)
  • Biotechnology (AREA)
  • Hematology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biomedical Technology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Food Science & Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Cell Biology (AREA)
  • Evolutionary Biology (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Medicinal Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Measuring Pulse, Heart Rate, Blood Pressure Or Blood Flow (AREA)
  • Materials For Medical Uses (AREA)
  • Power-Operated Mechanisms For Wings (AREA)
AT03751934T 2002-08-29 2003-08-29 Systeme und verfahren zum schliessen auf biologische netzwerke ATE398808T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US40676402P 2002-08-29 2002-08-29

Publications (1)

Publication Number Publication Date
ATE398808T1 true ATE398808T1 (de) 2008-07-15

Family

ID=31978354

Family Applications (1)

Application Number Title Priority Date Filing Date
AT03751934T ATE398808T1 (de) 2002-08-29 2003-08-29 Systeme und verfahren zum schliessen auf biologische netzwerke

Country Status (7)

Country Link
US (1) US7512497B2 (de)
EP (1) EP1540505B1 (de)
AT (1) ATE398808T1 (de)
AU (1) AU2003270041A1 (de)
DE (1) DE60321689D1 (de)
DK (1) DK1540505T3 (de)
WO (1) WO2004021144A2 (de)

Families Citing this family (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7466663B2 (en) * 2000-10-26 2008-12-16 Inrotis Technology, Limited Method and apparatus for identifying components of a network having high importance for network integrity
US20050197783A1 (en) * 2004-03-04 2005-09-08 Kuchinsky Allan J. Methods and systems for extension, exploration, refinement, and analysis of biological networks
US8916530B2 (en) * 2005-11-18 2014-12-23 Gradalis, Inc. Individualized cancer therapy
US8603991B2 (en) 2005-11-18 2013-12-10 Gradalis, Inc. Individualized cancer therapy
US8252526B2 (en) 2006-11-09 2012-08-28 Gradalis, Inc. ShRNA molecules and methods of use thereof
US8758998B2 (en) 2006-11-09 2014-06-24 Gradalis, Inc. Construction of bifunctional short hairpin RNA
US7747547B1 (en) * 2007-10-31 2010-06-29 Pathwork Diagnostics, Inc. Systems and methods for diagnosing a biological specimen using probabilities
CA2743211A1 (en) 2008-11-12 2010-05-20 Caris Life Sciences Luxembourg Holdings, S.A.R.L. Methods and systems of using exosomes for determining phenotypes
US20110098993A1 (en) * 2009-10-27 2011-04-28 Anaxomics Biotech Sl. Methods and systems for identifying molecules or processes of biological interest by using knowledge discovery in biological data
US9157084B2 (en) 2009-12-23 2015-10-13 Gradalis, Inc. Furin-knockdown bi-functional RNA
EP2515916B1 (de) 2009-12-23 2016-03-09 Gradalis, Inc. Krebsimpfstoff zur furinzerlegung und gs-csf-erweiterung (fang)
US9128101B2 (en) 2010-03-01 2015-09-08 Caris Life Sciences Switzerland Holdings Gmbh Biomarkers for theranostics
WO2011127219A1 (en) 2010-04-06 2011-10-13 Caris Life Sciences Luxembourg Holdings Circulating biomarkers for disease
PH12013501802B1 (en) 2011-03-02 2018-06-27 Berg Llc Interrogatory cell-based assays and uses thereof
WO2013040076A1 (en) * 2011-09-12 2013-03-21 Fred Hutchinson Cancer Research Center Dynamics and control of state-dependent networks for probing genomic organization
AU2012376214B2 (en) 2012-04-02 2019-02-14 Berg Llc Interrogatory cell-based assays and uses thereof
CN105940421B (zh) * 2013-08-12 2020-09-01 菲利普莫里斯生产公司 用于生物网络的人群验证的系统和方法
SG10201902151UA (en) 2014-09-11 2019-04-29 Berg Llc Bayesian causal relationship network models for healthcare diagnosis and treatment based on patient data

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6983227B1 (en) 1995-01-17 2006-01-03 Intertech Ventures, Ltd. Virtual models of complex systems
US5980096A (en) 1995-01-17 1999-11-09 Intertech Ventures, Ltd. Computer-based system, methods and graphical interface for information storage, modeling and stimulation of complex systems
GB9517775D0 (en) * 1995-08-31 1995-11-01 Int Computers Ltd Computer system using genetic optimization techniques
US6816914B1 (en) 1995-12-29 2004-11-09 Agilent Technologies, Inc. Callable graphical programming language
US6678669B2 (en) * 1996-02-09 2004-01-13 Adeza Biomedical Corporation Method for selecting medical and biochemical diagnostic tests using neural network-related applications
CA2237960A1 (en) * 1997-06-18 1998-12-18 Goldcorp Inc. Manufacture of precipitated calcium carbonate of improved colour with stable crystalline form
US6051029A (en) 1997-10-31 2000-04-18 Entelos, Inc. Method of generating a display for a dynamic simulation model utilizing node and link representations
US6539347B1 (en) 1997-10-31 2003-03-25 Entelos, Inc. Method of generating a display for a dynamic simulation model utilizing node and link representations
US6132969A (en) 1998-06-19 2000-10-17 Rosetta Inpharmatics, Inc. Methods for testing biological network models
JP2001188768A (ja) * 1999-12-28 2001-07-10 Japan Science & Technology Corp ネットワーク推定方法
WO2003042857A1 (en) 2001-11-01 2003-05-22 Gene Network Sciences, Inc. Network ingerence methods
US7308363B2 (en) * 2002-01-23 2007-12-11 Sri International Modeling and evaluation metabolic reaction pathways and culturing cells
WO2003065244A1 (en) * 2002-01-30 2003-08-07 Board Of Regents, The University Of Texas System Probabilistic boolean networks
US7107191B2 (en) * 2002-05-02 2006-09-12 Microsoft Corporation Modular architecture for optimizing a configuration of a computer system

Also Published As

Publication number Publication date
DK1540505T3 (da) 2008-10-13
DE60321689D1 (de) 2008-07-31
US7512497B2 (en) 2009-03-31
AU2003270041A1 (en) 2004-03-19
WO2004021144A3 (en) 2004-09-10
EP1540505A2 (de) 2005-06-15
AU2003270041A8 (en) 2004-03-19
EP1540505B1 (de) 2008-06-18
US20040243354A1 (en) 2004-12-02
WO2004021144A2 (en) 2004-03-11
EP1540505A4 (de) 2005-12-07

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