ATE398808T1 - Systeme und verfahren zum schliessen auf biologische netzwerke - Google Patents

Systeme und verfahren zum schliessen auf biologische netzwerke

Info

Publication number
ATE398808T1
ATE398808T1 AT03751934T AT03751934T ATE398808T1 AT E398808 T1 ATE398808 T1 AT E398808T1 AT 03751934 T AT03751934 T AT 03751934T AT 03751934 T AT03751934 T AT 03751934T AT E398808 T1 ATE398808 T1 AT E398808T1
Authority
AT
Austria
Prior art keywords
networks
systems
infer
network
methods described
Prior art date
Application number
AT03751934T
Other languages
English (en)
Inventor
Vipul Periwal
Original Assignee
Gene Network Sciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gene Network Sciences Inc filed Critical Gene Network Sciences Inc
Application granted granted Critical
Publication of ATE398808T1 publication Critical patent/ATE398808T1/de

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
    • G01N33/5091—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing the pathological state of an organism
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701—Details
    • G01N2333/4739—Cyclin; Prad 1
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00—Data processing: database and file management or data structures
    • Y10S707/99941—Database schema or data structure
    • Y10S707/99943—Generating database or data structure, e.g. via user interface

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical & Material Sciences (AREA)
  • Physiology (AREA)
  • Urology & Nephrology (AREA)
  • Biotechnology (AREA)
  • Hematology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biomedical Technology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Food Science & Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Cell Biology (AREA)
  • Evolutionary Biology (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Medicinal Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Measuring Pulse, Heart Rate, Blood Pressure Or Blood Flow (AREA)
  • Materials For Medical Uses (AREA)
  • Power-Operated Mechanisms For Wings (AREA)
AT03751934T 2002-08-29 2003-08-29 Systeme und verfahren zum schliessen auf biologische netzwerke ATE398808T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US40676402P 2002-08-29 2002-08-29

Publications (1)

Publication Number Publication Date
ATE398808T1 true ATE398808T1 (de) 2008-07-15

Family

ID=31978354

Family Applications (1)

Application Number Title Priority Date Filing Date
AT03751934T ATE398808T1 (de) 2002-08-29 2003-08-29 Systeme und verfahren zum schliessen auf biologische netzwerke

Country Status (7)

Country Link
US (1) US7512497B2 (de)
EP (1) EP1540505B1 (de)
AT (1) ATE398808T1 (de)
AU (1) AU2003270041A1 (de)
DE (1) DE60321689D1 (de)
DK (1) DK1540505T3 (de)
WO (1) WO2004021144A2 (de)

Families Citing this family (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7466663B2 (en) * 2000-10-26 2008-12-16 Inrotis Technology, Limited Method and apparatus for identifying components of a network having high importance for network integrity
US20050197783A1 (en) * 2004-03-04 2005-09-08 Kuchinsky Allan J. Methods and systems for extension, exploration, refinement, and analysis of biological networks
US8916530B2 (en) 2005-11-18 2014-12-23 Gradalis, Inc. Individualized cancer therapy
US8603991B2 (en) 2005-11-18 2013-12-10 Gradalis, Inc. Individualized cancer therapy
US8252526B2 (en) 2006-11-09 2012-08-28 Gradalis, Inc. ShRNA molecules and methods of use thereof
US8758998B2 (en) 2006-11-09 2014-06-24 Gradalis, Inc. Construction of bifunctional short hairpin RNA
US7747547B1 (en) * 2007-10-31 2010-06-29 Pathwork Diagnostics, Inc. Systems and methods for diagnosing a biological specimen using probabilities
WO2010056337A2 (en) 2008-11-12 2010-05-20 Caris Mpi, Inc. Methods and systems of using exosomes for determining phenotypes
WO2011051805A1 (en) * 2009-10-27 2011-05-05 Anaxomics Biotech Sl Methods and systems for identifying molecules or processes of biological interest by using knowledge discovery in biological data
US9157084B2 (en) 2009-12-23 2015-10-13 Gradalis, Inc. Furin-knockdown bi-functional RNA
SG181880A1 (en) 2009-12-23 2012-07-30 Gradalis Inc Furin-knockdown and gm-csf-augmented (fang) cancer vaccine
EP2542696B1 (de) 2010-03-01 2016-09-28 Caris Life Sciences Switzerland Holdings GmbH Theranostik-biomarker
JP2013526852A (ja) 2010-04-06 2013-06-27 カリス ライフ サイエンシズ ルクセンブルク ホールディングス 疾患に対する循環バイオマーカー
AU2012223136B2 (en) 2011-03-02 2017-05-25 Berg Llc Interrogatory cell-based assays and uses thereof
WO2013040076A1 (en) * 2011-09-12 2013-03-21 Fred Hutchinson Cancer Research Center Dynamics and control of state-dependent networks for probing genomic organization
MX357392B (es) 2012-04-02 2018-07-06 Berg Llc Ensayos basados en interrogatorios celulares y uso de los mismos.
CA2929988A1 (en) * 2013-08-12 2015-02-19 Selventa Systems and methods for crowd-verification of biological networks
CN114203296B (zh) 2014-09-11 2025-10-17 布普格生物制药公司 基于患者数据的用于健康护理诊断和治疗的贝叶斯因果关系网络模型

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6983227B1 (en) 1995-01-17 2006-01-03 Intertech Ventures, Ltd. Virtual models of complex systems
US5980096A (en) 1995-01-17 1999-11-09 Intertech Ventures, Ltd. Computer-based system, methods and graphical interface for information storage, modeling and stimulation of complex systems
GB9517775D0 (en) * 1995-08-31 1995-11-01 Int Computers Ltd Computer system using genetic optimization techniques
US6816914B1 (en) 1995-12-29 2004-11-09 Agilent Technologies, Inc. Callable graphical programming language
US6678669B2 (en) 1996-02-09 2004-01-13 Adeza Biomedical Corporation Method for selecting medical and biochemical diagnostic tests using neural network-related applications
CA2237960A1 (en) * 1997-06-18 1998-12-18 Goldcorp Inc. Manufacture of precipitated calcium carbonate of improved colour with stable crystalline form
US6051029A (en) 1997-10-31 2000-04-18 Entelos, Inc. Method of generating a display for a dynamic simulation model utilizing node and link representations
US6539347B1 (en) 1997-10-31 2003-03-25 Entelos, Inc. Method of generating a display for a dynamic simulation model utilizing node and link representations
US6132969A (en) * 1998-06-19 2000-10-17 Rosetta Inpharmatics, Inc. Methods for testing biological network models
JP2001188768A (ja) * 1999-12-28 2001-07-10 Japan Science & Technology Corp ネットワーク推定方法
WO2003042857A1 (en) 2001-11-01 2003-05-22 Gene Network Sciences, Inc. Network ingerence methods
US7308363B2 (en) * 2002-01-23 2007-12-11 Sri International Modeling and evaluation metabolic reaction pathways and culturing cells
US7257563B2 (en) * 2002-01-30 2007-08-14 The Board Of Regents Of The University Of Texas Probabilistic boolean networks
US7107191B2 (en) * 2002-05-02 2006-09-12 Microsoft Corporation Modular architecture for optimizing a configuration of a computer system

Also Published As

Publication number Publication date
WO2004021144A2 (en) 2004-03-11
AU2003270041A1 (en) 2004-03-19
EP1540505B1 (de) 2008-06-18
DE60321689D1 (de) 2008-07-31
DK1540505T3 (da) 2008-10-13
EP1540505A2 (de) 2005-06-15
WO2004021144A3 (en) 2004-09-10
AU2003270041A8 (en) 2004-03-19
US7512497B2 (en) 2009-03-31
US20040243354A1 (en) 2004-12-02
EP1540505A4 (de) 2005-12-07

Similar Documents

Publication Publication Date Title
ATE398808T1 (de) Systeme und verfahren zum schliessen auf biologische netzwerke
PH12017502073A1 (en) Interrogatory cell-based assays and uses thereof
Nadachowska‐Brzyska et al. PSMC analysis of effective population sizes in molecular ecology and its application to black‐and‐white Ficedula flycatchers
Hartung et al. Food for thought… on mapping the human toxome
Saadatpour et al. A reduction method for Boolean network models proven to conserve attractors
Witzany What is life?
Romero-Campero et al. A model of the quorum sensing system in Vibrio fischeri using P systems
Sumner The importance of genomic novelty in social evolution
Knörnschild et al. Vocal information and the navigation of social decisions in bats: is social complexity linked to vocal complexity?
Liseron-Monfils et al. Revealing gene regulation and associations through biological networks
ATE518155T1 (de) Berechnungsverfahren für netzwerkspezifische grössen in einem netzwerk aus referenzstationen für ein satellitenbasiertes positionierungssystem
Kohsokabe et al. Evolution‐development congruence in pattern formation dynamics: Bifurcations in gene expression and regulation of networks structures
Succurro et al. A diverse community to study communities: integration of experiments and mathematical models to study microbial consortia
Sharov Evolutionary biosemiotics and multilevel construction networks
Musher et al. Shifting ecosystem connectivity during the Pleistocene drove diversification and gene‐flow in a species complex of Neotropical birds (Tityridae: Pachyramphus)
Jaya et al. Population genomics and sexual signals support reproductive character displacement in Uperoleia (Anura: Myobatrachidae) in a contact zone
Brady et al. Arabidopsis research in 2030: Translating the computable plant
Gujjar et al. Agri friendly conversational AI chatbot using open source framework
Kadish et al. An artificial life approach to studying niche differentiation in soundscape ecology
WO2007005931A3 (en) Method and apparatus for integrated modeling, simulation and analysis of chemical and biological systems having a sequence of reactions, each simulated at a reaction time determined based on reaction kinetics
Bi et al. Spatiotemporal control of genetic circuit with pulse generation for molecular communication
Jain et al. Introduction to evolutionary computing in system design
WO2005003368A3 (de) Verfahren, computerprogramm mit programmcode-mitteln und computerprogramm-produkt zur analyse eines regulatorischen genetischen netzwerks einer zelle
Wang et al. Anatomy of complex system research
Gupta Manipulating spatiotemporal variables to program coordinated behaviors in microbial consortia

Legal Events

Date Code Title Description
RER Ceased as to paragraph 5 lit. 3 law introducing patent treaties