CA2560521C - Compositions destinees a l'identification de bacteries - Google Patents
Compositions destinees a l'identification de bacteries Download PDFInfo
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- CA2560521C CA2560521C CA2560521A CA2560521A CA2560521C CA 2560521 C CA2560521 C CA 2560521C CA 2560521 A CA2560521 A CA 2560521A CA 2560521 A CA2560521 A CA 2560521A CA 2560521 C CA2560521 C CA 2560521C
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- BUZOGVVQWCXXDP-VPENINKCSA-N 8-oxo-dGTP Chemical compound O=C1NC=2C(=O)NC(N)=NC=2N1[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1 BUZOGVVQWCXXDP-VPENINKCSA-N 0.000 claims description 3
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- YQOCUTDPKPPQGA-RRKCRQDMSA-N [[(2r,3s,5r)-5-(5-fluoro-2,4-dioxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate Chemical compound O1[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)C[C@@H]1N1C(=O)NC(=O)C(F)=C1 YQOCUTDPKPPQGA-RRKCRQDMSA-N 0.000 claims description 3
- ZWDWDTXYXXJLJB-RRKCRQDMSA-N [hydroxy-[[(2r,3s,5r)-3-hydroxy-5-(5-iodo-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] phosphono hydrogen phosphate Chemical compound O1[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)C[C@@H]1N1C(=O)NC(=O)C(I)=C1 ZWDWDTXYXXJLJB-RRKCRQDMSA-N 0.000 claims description 3
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (11)
| Application Number | Priority Date | Filing Date | Title |
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| US54542504P | 2004-02-18 | 2004-02-18 | |
| US60/545,425 | 2004-02-18 | ||
| US55975404P | 2004-04-05 | 2004-04-05 | |
| US60/559,754 | 2004-04-05 | ||
| US63286204P | 2004-12-03 | 2004-12-03 | |
| US60/632,862 | 2004-12-03 | ||
| US63906804P | 2004-12-22 | 2004-12-22 | |
| US60/639,068 | 2004-12-22 | ||
| US64818805P | 2005-01-28 | 2005-01-28 | |
| US60/648,188 | 2005-01-28 | ||
| PCT/US2005/006133 WO2006071241A2 (fr) | 2004-02-18 | 2005-02-18 | Compositions destinees a l'identification de bacteries |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2560521A1 CA2560521A1 (fr) | 2006-07-06 |
| CA2560521C true CA2560521C (fr) | 2012-01-03 |
Family
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
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| CA2560521A Expired - Fee Related CA2560521C (fr) | 2004-02-18 | 2005-02-18 | Compositions destinees a l'identification de bacteries |
Country Status (5)
| Country | Link |
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| EP (1) | EP1725686A4 (fr) |
| JP (1) | JP2007525978A (fr) |
| AU (2) | AU2005322640B2 (fr) |
| CA (1) | CA2560521C (fr) |
| WO (2) | WO2006071241A2 (fr) |
Families Citing this family (48)
| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2009155061A2 (fr) * | 2008-05-30 | 2009-12-23 | Ibis Biosciences, Inc. | Compositions à utiliser pour identifier des souches d'e. coli o157:h7 |
| US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
| US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
| US20040121309A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
| US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
| CA2348042A1 (fr) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences permettant de detecter et d'identifier des staphylococcus aureus resistant a la meticilline |
| US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
| US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
| JP2006516193A (ja) | 2002-12-06 | 2006-06-29 | アイシス・ファーマシューティカルス・インコーポレーテッド | ヒトおよび動物における病原体の迅速な同定方法 |
| US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
| US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US7956175B2 (en) | 2003-09-11 | 2011-06-07 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
| US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
| EP2458619B1 (fr) | 2004-05-24 | 2017-08-02 | Ibis Biosciences, Inc. | Spectrométrie de masse avec filtration sélective d'ions par établissement de seuils numériques |
| US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
| US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
| WO2006135400A2 (fr) | 2004-08-24 | 2006-12-21 | Isis Pharmaceuticals, Inc. | Procedes pour l'identification rapide d'organismes recombinants |
| WO2006094238A2 (fr) | 2005-03-03 | 2006-09-08 | Isis Pharmaceuticals, Inc. | Compositions utilisees pour identifier des virus secondaires |
| US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
| CA2616281C (fr) | 2005-07-21 | 2014-04-22 | Isis Pharmaceuticals, Inc. | Procede pour l'identification et la quantification rapide de variants d'acide nucleique |
| US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
| BRPI0605802A (pt) * | 2005-11-21 | 2007-09-04 | Biosigma Sa | método e arranjo para detectar e indentificar os microorganismos presentes em uma amostra usando as regiões genÈmicas que codificam para as distintas rnat sintetases |
| JP5420412B2 (ja) | 2006-09-14 | 2014-02-19 | アイビス バイオサイエンシズ インコーポレイティッド | 病原体の同定のための標的全ゲノム増幅方法 |
| JP5680304B2 (ja) | 2007-02-23 | 2015-03-04 | アイビス バイオサイエンシズ インコーポレイティッド | 迅速な法医学的dna分析法 |
| EP1997905A1 (fr) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Amplification d'acide nucléique |
| US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
| EP2344893B1 (fr) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Systèmes et procédés de manipulation de microplaques |
| WO2010033599A2 (fr) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Cartouches de mélange, postes de mélange et kits, systèmes et procédés associés |
| US8148163B2 (en) | 2008-09-16 | 2012-04-03 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
| US20110183345A1 (en) * | 2008-10-03 | 2011-07-28 | Ibis Biosciences, Inc. | Compositions for use in identification of streptococcus pneumoniae |
| EP2396803A4 (fr) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ensembles sonde d'ionisation |
| WO2010114842A1 (fr) | 2009-03-30 | 2010-10-07 | Ibis Biosciences, Inc. | Systèmes, dispositifs et procédés de détection d'agent biologique |
| US9194877B2 (en) | 2009-07-17 | 2015-11-24 | Ibis Biosciences, Inc. | Systems for bioagent indentification |
| US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
| WO2011014811A1 (fr) | 2009-07-31 | 2011-02-03 | Ibis Biosciences, Inc. | Amorces de capture et supports solides liés à une séquence de capture pour tests diagnostiques moléculaires |
| ES2628739T3 (es) | 2009-10-15 | 2017-08-03 | Ibis Biosciences, Inc. | Amplificación por desplazamiento múltiple |
| US20110224106A1 (en) | 2010-03-10 | 2011-09-15 | Ibis Biosciences, Inc. | Production Of Single-Stranded Circular Nucleic Acid |
| US9068017B2 (en) | 2010-04-08 | 2015-06-30 | Ibis Biosciences, Inc. | Compositions and methods for inhibiting terminal transferase activity |
| EP2753629B1 (fr) | 2011-09-06 | 2016-10-19 | Ibis Biosciences, Inc. | Procédé pour détecter la maladie de lyme |
| WO2013101935A1 (fr) | 2011-12-27 | 2013-07-04 | Ibis Biosciences, Inc. | Oligonucléotides pour la détection d'agent biologique |
| JP2013171343A (ja) | 2012-02-17 | 2013-09-02 | Toshiba Corp | ストレージデバイス |
| WO2014052590A1 (fr) | 2012-09-26 | 2014-04-03 | Ibis Biosciences, Inc. | Dispositifs permettant de mettre en interface un écouvillon avec un dispositif microfluidique ainsi que trousses, systèmes et procédés associés |
| US12379382B2 (en) * | 2018-09-28 | 2025-08-05 | Keio University | Analysis method, analytical method and microorganism identification method |
| RU2765495C1 (ru) * | 2021-05-31 | 2022-01-31 | Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека | Способ определения подвидов Francisella tularensis методом мультипраймерной ПЦР |
| WO2022271860A2 (fr) * | 2021-06-22 | 2022-12-29 | Janus-I Science Inc. | Procédé d'analyse large de micro-organismes et de déterminants de résistance aux médicaments dans des échantillons provenant d'un sujet et dispositifs correspondants |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5849492A (en) * | 1994-02-28 | 1998-12-15 | Phylogenetix Laboratories, Inc. | Method for rapid identification of prokaryotic and eukaryotic organisms |
| US6503709B1 (en) * | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
| KR100395181B1 (ko) * | 1997-08-26 | 2003-08-21 | 미츠비시 스미토모 실리콘 주식회사 | 고품질 실리콘 단결정 및 그 제조방법 |
| US6613509B1 (en) * | 1999-03-22 | 2003-09-02 | Regents Of The University Of California | Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry |
| WO2002016649A2 (fr) * | 2000-08-25 | 2002-02-28 | Illumina, Inc. | Sondes et oligonucleotides decodeurs |
| US20030027135A1 (en) * | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
| US20040121309A1 (en) * | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
| JP2003061665A (ja) * | 2001-08-21 | 2003-03-04 | Yakult Bio-Science Foundation | 芽胞形成菌の検出方法 |
-
2005
- 2005-02-18 CA CA2560521A patent/CA2560521C/fr not_active Expired - Fee Related
- 2005-02-18 AU AU2005322640A patent/AU2005322640B2/en not_active Ceased
- 2005-02-18 WO PCT/US2005/006133 patent/WO2006071241A2/fr not_active Ceased
- 2005-02-18 JP JP2006554339A patent/JP2007525978A/ja active Pending
- 2005-02-18 EP EP05856582A patent/EP1725686A4/fr not_active Withdrawn
- 2005-02-18 WO PCT/US2005/005356 patent/WO2005098047A2/fr not_active Ceased
-
2008
- 2008-12-12 AU AU2008255266A patent/AU2008255266B2/en not_active Ceased
Also Published As
| Publication number | Publication date |
|---|---|
| EP1725686A2 (fr) | 2006-11-29 |
| WO2006071241A3 (fr) | 2007-09-13 |
| CA2560521A1 (fr) | 2006-07-06 |
| WO2006071241A2 (fr) | 2006-07-06 |
| WO2005098047A2 (fr) | 2005-10-20 |
| WO2005098047A3 (fr) | 2007-10-04 |
| JP2007525978A (ja) | 2007-09-13 |
| AU2008255266A1 (en) | 2009-01-08 |
| AU2005322640A1 (en) | 2006-07-06 |
| EP1725686A4 (fr) | 2008-12-10 |
| AU2008255266B2 (en) | 2011-07-14 |
| AU2005322640B2 (en) | 2008-09-18 |
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Legal Events
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| EEER | Examination request | ||
| MKLA | Lapsed |
Effective date: 20150218 |