CA2560521C - Compositions destinees a l'identification de bacteries - Google Patents

Compositions destinees a l'identification de bacteries Download PDF

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Publication number
CA2560521C
CA2560521C CA2560521A CA2560521A CA2560521C CA 2560521 C CA2560521 C CA 2560521C CA 2560521 A CA2560521 A CA 2560521A CA 2560521 A CA2560521 A CA 2560521A CA 2560521 C CA2560521 C CA 2560521C
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CA
Canada
Prior art keywords
data
primer
triphosphate
primers
seq
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
CA2560521A
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English (en)
Other versions
CA2560521A1 (fr
Inventor
Rangarajan Sampath
Thomas A. Hall
David J. Ecker
Mark W. Eshoo
Christian Massire
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
Original Assignee
Ibis Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ibis Biosciences Inc filed Critical Ibis Biosciences Inc
Publication of CA2560521A1 publication Critical patent/CA2560521A1/fr
Application granted granted Critical
Publication of CA2560521C publication Critical patent/CA2560521C/fr
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2560521A 2004-02-18 2005-02-18 Compositions destinees a l'identification de bacteries Expired - Fee Related CA2560521C (fr)

Applications Claiming Priority (11)

Application Number Priority Date Filing Date Title
US54542504P 2004-02-18 2004-02-18
US60/545,425 2004-02-18
US55975404P 2004-04-05 2004-04-05
US60/559,754 2004-04-05
US63286204P 2004-12-03 2004-12-03
US60/632,862 2004-12-03
US63906804P 2004-12-22 2004-12-22
US60/639,068 2004-12-22
US64818805P 2005-01-28 2005-01-28
US60/648,188 2005-01-28
PCT/US2005/006133 WO2006071241A2 (fr) 2004-02-18 2005-02-18 Compositions destinees a l'identification de bacteries

Publications (2)

Publication Number Publication Date
CA2560521A1 CA2560521A1 (fr) 2006-07-06
CA2560521C true CA2560521C (fr) 2012-01-03

Family

ID=35125687

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2560521A Expired - Fee Related CA2560521C (fr) 2004-02-18 2005-02-18 Compositions destinees a l'identification de bacteries

Country Status (5)

Country Link
EP (1) EP1725686A4 (fr)
JP (1) JP2007525978A (fr)
AU (2) AU2005322640B2 (fr)
CA (1) CA2560521C (fr)
WO (2) WO2006071241A2 (fr)

Families Citing this family (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009155061A2 (fr) * 2008-05-30 2009-12-23 Ibis Biosciences, Inc. Compositions à utiliser pour identifier des souches d'e. coli o157:h7
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US20040121309A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
CA2348042A1 (fr) 2001-06-04 2002-12-04 Ann Huletsky Sequences permettant de detecter et d'identifier des staphylococcus aureus resistant a la meticilline
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
JP2006516193A (ja) 2002-12-06 2006-06-29 アイシス・ファーマシューティカルス・インコーポレーテッド ヒトおよび動物における病原体の迅速な同定方法
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US7956175B2 (en) 2003-09-11 2011-06-07 Ibis Biosciences, Inc. Compositions for use in identification of bacteria
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
EP2458619B1 (fr) 2004-05-24 2017-08-02 Ibis Biosciences, Inc. Spectrométrie de masse avec filtration sélective d'ions par établissement de seuils numériques
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (fr) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Procedes pour l'identification rapide d'organismes recombinants
WO2006094238A2 (fr) 2005-03-03 2006-09-08 Isis Pharmaceuticals, Inc. Compositions utilisees pour identifier des virus secondaires
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
CA2616281C (fr) 2005-07-21 2014-04-22 Isis Pharmaceuticals, Inc. Procede pour l'identification et la quantification rapide de variants d'acide nucleique
US11834720B2 (en) 2005-10-11 2023-12-05 Geneohm Sciences, Inc. Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx
BRPI0605802A (pt) * 2005-11-21 2007-09-04 Biosigma Sa método e arranjo para detectar e indentificar os microorganismos presentes em uma amostra usando as regiões genÈmicas que codificam para as distintas rnat sintetases
JP5420412B2 (ja) 2006-09-14 2014-02-19 アイビス バイオサイエンシズ インコーポレイティッド 病原体の同定のための標的全ゲノム増幅方法
JP5680304B2 (ja) 2007-02-23 2015-03-04 アイビス バイオサイエンシズ インコーポレイティッド 迅速な法医学的dna分析法
EP1997905A1 (fr) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplification d'acide nucléique
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
EP2344893B1 (fr) 2008-09-16 2014-10-15 Ibis Biosciences, Inc. Systèmes et procédés de manipulation de microplaques
WO2010033599A2 (fr) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Cartouches de mélange, postes de mélange et kits, systèmes et procédés associés
US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
US20110183345A1 (en) * 2008-10-03 2011-07-28 Ibis Biosciences, Inc. Compositions for use in identification of streptococcus pneumoniae
EP2396803A4 (fr) 2009-02-12 2016-10-26 Ibis Biosciences Inc Ensembles sonde d'ionisation
WO2010114842A1 (fr) 2009-03-30 2010-10-07 Ibis Biosciences, Inc. Systèmes, dispositifs et procédés de détection d'agent biologique
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
WO2011014811A1 (fr) 2009-07-31 2011-02-03 Ibis Biosciences, Inc. Amorces de capture et supports solides liés à une séquence de capture pour tests diagnostiques moléculaires
ES2628739T3 (es) 2009-10-15 2017-08-03 Ibis Biosciences, Inc. Amplificación por desplazamiento múltiple
US20110224106A1 (en) 2010-03-10 2011-09-15 Ibis Biosciences, Inc. Production Of Single-Stranded Circular Nucleic Acid
US9068017B2 (en) 2010-04-08 2015-06-30 Ibis Biosciences, Inc. Compositions and methods for inhibiting terminal transferase activity
EP2753629B1 (fr) 2011-09-06 2016-10-19 Ibis Biosciences, Inc. Procédé pour détecter la maladie de lyme
WO2013101935A1 (fr) 2011-12-27 2013-07-04 Ibis Biosciences, Inc. Oligonucléotides pour la détection d'agent biologique
JP2013171343A (ja) 2012-02-17 2013-09-02 Toshiba Corp ストレージデバイス
WO2014052590A1 (fr) 2012-09-26 2014-04-03 Ibis Biosciences, Inc. Dispositifs permettant de mettre en interface un écouvillon avec un dispositif microfluidique ainsi que trousses, systèmes et procédés associés
US12379382B2 (en) * 2018-09-28 2025-08-05 Keio University Analysis method, analytical method and microorganism identification method
RU2765495C1 (ru) * 2021-05-31 2022-01-31 Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека Способ определения подвидов Francisella tularensis методом мультипраймерной ПЦР
WO2022271860A2 (fr) * 2021-06-22 2022-12-29 Janus-I Science Inc. Procédé d'analyse large de micro-organismes et de déterminants de résistance aux médicaments dans des échantillons provenant d'un sujet et dispositifs correspondants

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5849492A (en) * 1994-02-28 1998-12-15 Phylogenetix Laboratories, Inc. Method for rapid identification of prokaryotic and eukaryotic organisms
US6503709B1 (en) * 1997-07-03 2003-01-07 Id Biomedical Corporation Methods for rapidly detecting methicillin resistant staphylococci
KR100395181B1 (ko) * 1997-08-26 2003-08-21 미츠비시 스미토모 실리콘 주식회사 고품질 실리콘 단결정 및 그 제조방법
US6613509B1 (en) * 1999-03-22 2003-09-02 Regents Of The University Of California Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry
WO2002016649A2 (fr) * 2000-08-25 2002-02-28 Illumina, Inc. Sondes et oligonucleotides decodeurs
US20030027135A1 (en) * 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US20040121309A1 (en) * 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues
JP2003061665A (ja) * 2001-08-21 2003-03-04 Yakult Bio-Science Foundation 芽胞形成菌の検出方法

Also Published As

Publication number Publication date
EP1725686A2 (fr) 2006-11-29
WO2006071241A3 (fr) 2007-09-13
CA2560521A1 (fr) 2006-07-06
WO2006071241A2 (fr) 2006-07-06
WO2005098047A2 (fr) 2005-10-20
WO2005098047A3 (fr) 2007-10-04
JP2007525978A (ja) 2007-09-13
AU2008255266A1 (en) 2009-01-08
AU2005322640A1 (en) 2006-07-06
EP1725686A4 (fr) 2008-12-10
AU2008255266B2 (en) 2011-07-14
AU2005322640B2 (en) 2008-09-18

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Effective date: 20150218