CA2617635C - Methods and compositions for detecting bk virus - Google Patents

Methods and compositions for detecting bk virus Download PDF

Info

Publication number
CA2617635C
CA2617635C CA2617635A CA2617635A CA2617635C CA 2617635 C CA2617635 C CA 2617635C CA 2617635 A CA2617635 A CA 2617635A CA 2617635 A CA2617635 A CA 2617635A CA 2617635 C CA2617635 C CA 2617635C
Authority
CA
Canada
Prior art keywords
nucleic acid
seq
complement
bkv
detecting
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CA2617635A
Other languages
English (en)
French (fr)
Other versions
CA2617635A1 (en
Inventor
Fan Chen
Lilly I. Kong
Jules Chen
Mehrdad Jannatipour
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Quest Diagnostics Infectious Disease Inc
Original Assignee
Focus Diagnostics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Focus Diagnostics Inc filed Critical Focus Diagnostics Inc
Publication of CA2617635A1 publication Critical patent/CA2617635A1/en
Application granted granted Critical
Publication of CA2617635C publication Critical patent/CA2617635C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2710/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011—Details
    • C12N2710/22011—Polyomaviridae, e.g. polyoma, SV40, JC
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Virology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2617635A 2005-08-02 2006-07-25 Methods and compositions for detecting bk virus Active CA2617635C (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US70521705P 2005-08-02 2005-08-02
US60/705,217 2005-08-02
US11/246,904 US7892795B2 (en) 2005-08-02 2005-10-06 Methods and compositions for detecting BK virus
US11/246,904 2005-10-06
PCT/US2006/029243 WO2007016275A2 (en) 2005-08-02 2006-07-25 Methods and compositions for detecting bk virus

Publications (2)

Publication Number Publication Date
CA2617635A1 CA2617635A1 (en) 2007-02-08
CA2617635C true CA2617635C (en) 2015-07-21

Family

ID=37709186

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2617635A Active CA2617635C (en) 2005-08-02 2006-07-25 Methods and compositions for detecting bk virus

Country Status (8)

Country Link
US (4) US7892795B2 (2)
EP (2) EP1910578B1 (2)
JP (1) JP2009502196A (2)
CN (3) CN110423844B (2)
AU (1) AU2006275803B2 (2)
CA (1) CA2617635C (2)
ES (1) ES2552725T3 (2)
WO (1) WO2007016275A2 (2)

Families Citing this family (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7892795B2 (en) * 2005-08-02 2011-02-22 Focus Diagnostics, Inc. Methods and compositions for detecting BK virus
US20090246754A1 (en) * 2008-02-19 2009-10-01 Intelligent Mdx Optimized probes and primers and methods of using same for the detection and quantitation of bk virus
KR20110011600A (ko) * 2008-02-20 2011-02-08 이와키, 코수케, 켄 폴리오마바이러스 검출
US20090258342A1 (en) * 2008-04-09 2009-10-15 Intelligent Medical Devices, Inc. Optimized probes and primers and methods of using same for the detection, quantification and grouping of hiv-1
CN102344970B (zh) * 2010-07-27 2013-01-23 温州医学院附属第一医院 同时检测人cmv和bk病毒dna的引物序列及定量检测试剂盒
CN102154523B (zh) * 2011-04-07 2013-01-02 温岭市第一人民医院 检测人bk病毒核酸的引物与荧光探针及其应用
CN102690894B (zh) * 2011-06-08 2013-05-01 中国人民解放军第三〇九医院 一种bk病毒的检测方法、其试剂盒及应用
CN103093120A (zh) * 2011-11-08 2013-05-08 北京健数通生物计算技术有限公司 高通量检测脊椎动物病原体基因芯片的探针设计方法
CN104745723A (zh) * 2015-01-30 2015-07-01 湖北永邦医疗科技有限公司 一种用于检测bk病毒的引物、探针和试剂盒
US10793923B2 (en) * 2016-11-09 2020-10-06 Roche Molecular Systems, Inc. Compositions and methods for detection of BK virus
JP7532257B2 (ja) * 2018-03-02 2024-08-13 アカデミシュ・ジークンホイス・ライデン・ハー・オー・デー・エン・ライドス・ユニヴェルシタイル・メディシュ・セントルム ポリオーマウイルス複製の阻害
FR3082524B1 (fr) * 2018-06-18 2022-03-25 Univ Paris Sud Methode de stratification du risque de nephropathie a bk-virus apres transplantation renale
WO2020086546A1 (en) * 2018-10-22 2020-04-30 Gen-Probe Incorporated Compositions and methods for amplifying, detecting or quantifying human polyomavirus bk virus
KR102347899B1 (ko) * 2019-06-21 2022-01-06 울산대학교 산학협력단 신장이식 후 bk 바이러스 신병증의 진단 또는 예후 예측을 위한 소변 엑소좀 바이오마커
CN111733298B (zh) * 2020-08-25 2020-11-20 圣湘生物科技股份有限公司 检测多瘤病毒并分型的组合物、试剂盒、方法及其用途
TWI833069B (zh) 2021-03-17 2024-02-21 國防醫學院 核酸探針組、核酸側流檢測套組以及該核酸側流檢測套組之用途
CN114107571B (zh) * 2022-01-18 2024-06-21 复旦大学附属中山医院 用于bk病毒lamp检测的试剂盒
CN115029485A (zh) * 2022-06-20 2022-09-09 广东永诺医疗科技有限公司 一种基于微滴式数字pcr的bkv病毒检测试剂盒

Family Cites Families (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4318846A (en) 1979-09-07 1982-03-09 Syva Company Novel ether substituted fluorescein polyamino acid compounds as fluorescers and quenchers
US4458066A (en) 1980-02-29 1984-07-03 University Patents, Inc. Process for preparing polynucleotides
US4415732A (en) 1981-03-27 1983-11-15 University Patents, Inc. Phosphoramidite compounds and processes
US4605735A (en) 1983-02-14 1986-08-12 Wakunaga Seiyaku Kabushiki Kaisha Oligonucleotide derivatives
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4757141A (en) 1985-08-26 1988-07-12 Applied Biosystems, Incorporated Amino-derivatized phosphite and phosphate linking agents, phosphoramidite precursors, and useful conjugates thereof
US4889818A (en) 1986-08-22 1989-12-26 Cetus Corporation Purified thermostable enzyme
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
US5283174A (en) 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
US5639604A (en) 1987-09-21 1997-06-17 Gen-Probe Incorporated Homogeneous protection assay
US6004745A (en) 1987-09-21 1999-12-21 Gen-Probe Incorporated Hybridization protection assay
US5585481A (en) 1987-09-21 1996-12-17 Gen-Probe Incorporated Linking reagents for nucleotide probes
US4914210A (en) 1987-10-02 1990-04-03 Cetus Corporation Oligonucleotide functionalizing reagents
US5185439A (en) 1987-10-05 1993-02-09 Gen-Probe Incorporated Acridinium ester labelling and purification of nucleotide probes
CA1340807C (en) 1988-02-24 1999-11-02 Lawrence T. Malek Nucleic acid amplification process
JP2650159B2 (ja) 1988-02-24 1997-09-03 アクゾ・ノベル・エヌ・ベー 核酸増幅方法
US5849481A (en) 1990-07-27 1998-12-15 Chiron Corporation Nucleic acid hybridization assays employing large comb-type branched polynucleotides
US5213796A (en) 1991-05-06 1993-05-25 Dana Farber Cancer Institute Assay for polyomavirus in humans and uses thereof
US5538848A (en) 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
US6127121A (en) * 1998-04-03 2000-10-03 Epoch Pharmaceuticals, Inc. Oligonucleotides containing pyrazolo[3,4-D]pyrimidines for hybridization and mismatch discrimination
WO2001066148A1 (en) 2000-03-08 2001-09-13 Neurosearch A/S A method of sensitising endothelial cells to prodrugs
US6605602B1 (en) * 2001-09-28 2003-08-12 University Of Pittsburgh-Of The Commonwealth System Of Higher Education Method of treating BK virus nephropathy
BRPI0214741B1 (pt) * 2001-12-08 2015-05-12 Seegene Inc Iniciador de controle de anelamento para melhorar a especificidade de anelamento na amplificação de ácido nucléico, Kit, Métodos para amplificar seqüências de ácido nucléico de um DNA e seqüência de ácido nucléico alvo ou uma mistura de ácidos nucléicos, para detectar a complementaridade de DNA ao mRNA diferencialmente expresso em duas ou mais amostras de ácido nucléico, para amplificar rapidamente um fragmento de CDNA alvo, para amplificar uma população de CDNAs de filamento duplo de comprimento completo complementar aos mRNAS, e CDNAs de filamento duplo enriquecidos em 5’ complementares aos mRNAS, para amplificar mais do que uma seqüência de nucleotídeo alvo simultaneamente, para produzir uma impressão digital de DNA de gDNA, e de RNA de uma amostra de mRNA, para identificar segmentos de homologia conservada em uma família de multigene a partir de uma amostra de mRNA, para identificar uma variação de nucleotídeo em um ácido nucléico alvo, para a mutagênese em um ácido nucléico alvo, e, uso do iniciador
US7892795B2 (en) * 2005-08-02 2011-02-22 Focus Diagnostics, Inc. Methods and compositions for detecting BK virus
WO2007127919A2 (en) * 2006-04-28 2007-11-08 Alnylam Pharmaceuticals, Inc. Compositions and methods for inhibiting expression of a gene from the jc virus
US20080003565A1 (en) * 2006-05-02 2008-01-03 Government Of The Us, As Represented By The Secretary, Department Of Health And Human Services Viral nucleic acid microarray and method of use

Also Published As

Publication number Publication date
EP1910578A4 (en) 2009-12-09
CN104862422A (zh) 2015-08-26
JP2009502196A (ja) 2009-01-29
EP1910578B1 (en) 2015-06-10
ES2552725T3 (es) 2015-12-01
US20110143349A1 (en) 2011-06-16
WO2007016275A2 (en) 2007-02-08
AU2006275803A1 (en) 2007-02-08
EP1910578A2 (en) 2008-04-16
US20070031825A1 (en) 2007-02-08
CN110423844B (zh) 2023-10-24
US9745638B2 (en) 2017-08-29
US7892795B2 (en) 2011-02-22
EP2662456A1 (en) 2013-11-13
US20140349275A1 (en) 2014-11-27
HK1115613A1 (en) 2008-12-05
CA2617635A1 (en) 2007-02-08
AU2006275803B2 (en) 2012-08-30
US20180044742A1 (en) 2018-02-15
CN101511995A (zh) 2009-08-19
CN101511995B (zh) 2015-07-01
CN110423844A (zh) 2019-11-08
US10801078B2 (en) 2020-10-13
WO2007016275A3 (en) 2009-04-30
US8748092B2 (en) 2014-06-10
CN104862422B (zh) 2019-07-16

Similar Documents

Publication Publication Date Title
US10801078B2 (en) Methods and compositions for detecting BK virus
US20030170612A1 (en) Diagnostic assays for parvovirus B19
US8119338B2 (en) Methods and compositions for detecting rhinoviruses
MXPA04012501A (es) Identificacion de oligonucleotidos para la captura, deteccion y cuatificacion de acido nucleico viral de la hepatitis a.
EP2046808A2 (en) Methods and reagents for detecting hantavirus
AU2012261529B2 (en) Methods and compositions for detecting BK virus
US20060057643A1 (en) Methods and compositions for detecting erythrovirus genotypes
HK1115613B (en) Methods and compositions for detecting bk virus

Legal Events

Date Code Title Description
EEER Examination request
MPN Maintenance fee for patent paid

Free format text: FEE DESCRIPTION TEXT: MF (PATENT, 19TH ANNIV.) - STANDARD

Year of fee payment: 19

U00 Fee paid

Free format text: ST27 STATUS EVENT CODE: A-4-4-U10-U00-U101 (AS PROVIDED BY THE NATIONAL OFFICE); EVENT TEXT: MAINTENANCE REQUEST RECEIVED

Effective date: 20250603

U11 Full renewal or maintenance fee paid

Free format text: ST27 STATUS EVENT CODE: A-4-4-U10-U11-U102 (AS PROVIDED BY THE NATIONAL OFFICE); EVENT TEXT: MAINTENANCE FEE PAYMENT PAID IN FULL

Effective date: 20250603