CA2726850C - Procede de synthese de variants de polynucleotides - Google Patents
Procede de synthese de variants de polynucleotides Download PDFInfo
- Publication number
- CA2726850C CA2726850C CA2726850A CA2726850A CA2726850C CA 2726850 C CA2726850 C CA 2726850C CA 2726850 A CA2726850 A CA 2726850A CA 2726850 A CA2726850 A CA 2726850A CA 2726850 C CA2726850 C CA 2726850C
- Authority
- CA
- Canada
- Prior art keywords
- sequence
- polynucleotide
- amplicons
- amino acid
- variants
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/102—Mutagenizing nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/102—Mutagenizing nucleic acids
- C12N15/1031—Mutagenizing nucleic acids mutagenesis by gene assembly, e.g. assembly by oligonucleotide extension PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/06—Libraries containing nucleotides or polynucleotides, or derivatives thereof
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/06—Biochemical methods, e.g. using enzymes or whole viable microorganisms
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biomedical Technology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Crystallography & Structural Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Medicinal Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US6158108P | 2008-06-13 | 2008-06-13 | |
| US61/061,581 | 2008-06-13 | ||
| PCT/US2009/047046 WO2009152336A1 (fr) | 2008-06-13 | 2009-06-11 | Procédé de synthèse de variants de polynucléotides |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2726850A1 CA2726850A1 (fr) | 2009-12-17 |
| CA2726850C true CA2726850C (fr) | 2015-06-02 |
Family
ID=41415347
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2726850A Active CA2726850C (fr) | 2008-06-13 | 2009-06-11 | Procede de synthese de variants de polynucleotides |
Country Status (7)
| Country | Link |
|---|---|
| EP (2) | EP3023494B1 (fr) |
| CN (1) | CN102066561B (fr) |
| CA (1) | CA2726850C (fr) |
| DK (2) | DK3023494T3 (fr) |
| ES (2) | ES2705694T3 (fr) |
| HU (2) | HUE029228T2 (fr) |
| WO (1) | WO2009152336A1 (fr) |
Families Citing this family (78)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20090312196A1 (en) * | 2008-06-13 | 2009-12-17 | Codexis, Inc. | Method of synthesizing polynucleotide variants |
| BRPI1012922A2 (pt) | 2009-06-16 | 2016-10-11 | Codexis Inc | polipeptídeo de b-glicosidase variante, vetor de expressão, célula hospedeira, método de produção de polipeptídeo de b-glicosidase variante, composição enzimática, método de conversão de um substrato de biomassa em açucar fermentável e método de produção de álcool |
| WO2011150313A1 (fr) | 2010-05-28 | 2011-12-01 | Codexis, Inc. | Fermentation de pentose par micro-organisme recombinant |
| US8574878B2 (en) | 2010-06-28 | 2013-11-05 | Behnaz Behrouzian | Fatty alcohol forming acyl reductases (FARs) and methods of use thereof |
| CA2807702C (fr) | 2010-08-20 | 2018-07-24 | Codexis, Inc. | Utilisation de proteines de la famille 61 des glycoside hydrolases dans le traitement de la cellulose |
| WO2012024662A2 (fr) | 2010-08-20 | 2012-02-23 | Codexis, Inc. | Constructions d'expression contenant des promoteurs fongiques |
| US8663962B2 (en) | 2011-03-30 | 2014-03-04 | Codexis, Inc. | Pentose fermentation by a recombinant microorganism |
| US8778652B2 (en) | 2011-06-30 | 2014-07-15 | Codexis, Inc. | Pentose fermentation by a recombinant microorganism |
| EP2748317B1 (fr) | 2011-08-22 | 2017-04-19 | Codexis, Inc. | Variants protéiques des glycosides hydrolases gh61 et cofacteurs renforçant l'activité des gh61 |
| WO2013048661A1 (fr) | 2011-09-30 | 2013-04-04 | Codexis, Inc. | Protéases fongiques |
| BR112014015030A2 (pt) | 2011-12-20 | 2017-06-13 | Codexis Inc | variantes da endoflucanase 1b (eg1b) |
| WO2013134341A1 (fr) | 2012-03-07 | 2013-09-12 | Dow Agrosciences Llc | Conduite de conception d'amorce pour séquençage ciblé |
| US8980578B2 (en) | 2012-06-11 | 2015-03-17 | Codexis, Inc. | Fungal beta-xylosidase variants |
| EP2922953A4 (fr) | 2012-11-20 | 2016-11-09 | Shell Int Research | Fermentation de pentose par un microorganisme recombiné |
| NZ713396A (en) | 2013-04-18 | 2020-06-26 | Codexis Inc | Engineered phenylalanine ammonia lyase polypeptides |
| RU2016116253A (ru) | 2013-09-27 | 2017-11-01 | Кодексис, Инк. | Автоматизированный скрининг вариантов фермента |
| CN106232619B (zh) | 2013-11-13 | 2022-09-09 | 科德克希思公司 | 工程化的亚胺还原酶和用于酮和胺化合物的还原胺化的方法 |
| WO2015161019A1 (fr) | 2014-04-16 | 2015-10-22 | Codexis, Inc. | Tyrosine ammonia-lyase génétiquement modifiée |
| US9708587B2 (en) | 2014-07-09 | 2017-07-18 | Codexis, Inc. | P450-BM3 variants with improved activity |
| US10370648B2 (en) | 2014-11-25 | 2019-08-06 | Codexis, Inc. | Engineered imine reductases and methods for the reductive amination of ketone and amine compounds |
| LT3237621T (lt) | 2014-12-22 | 2023-09-25 | Codexis, Inc. | Žmogaus alfa-galaktozidazės variantai |
| WO2016130412A1 (fr) | 2015-02-10 | 2016-08-18 | Codexis, Inc. | Polypeptides de cétoréductase pour la synthèse de composés chiraux |
| CN107531762A (zh) | 2015-05-07 | 2018-01-02 | 科德克希思公司 | 青霉素g酰化酶 |
| US9683220B2 (en) | 2015-07-07 | 2017-06-20 | Codexis, Inc. | P450-BM3 variants with improved activity |
| US10724025B2 (en) | 2016-05-05 | 2020-07-28 | Codexis, Inc. | Penicillin-G acylases |
| WO2017213758A1 (fr) | 2016-06-09 | 2017-12-14 | Codexis, Inc. | Biocatalyseurs et procédés d'hydroxylation de composés chimiques |
| MX2018015534A (es) | 2016-06-15 | 2019-03-14 | Codexis Inc | Beta-glucosidasas dise?adas y metodos de glucosilacion. |
| IL264686B2 (en) | 2016-08-26 | 2024-07-01 | Codexis Inc | Engineered imine reductases and methods for reversible amination of ketone and amine compounds |
| EP3565893A4 (fr) | 2017-01-05 | 2020-12-09 | Codexis, Inc. | Pénicilline g acylases |
| CA3175070A1 (fr) | 2017-02-03 | 2018-08-09 | Codexis, Inc. | Glycosyl transferases modifiees et procedes de glucosylation de glycosides de steviol |
| MX2019009615A (es) | 2017-02-13 | 2019-10-14 | Codexis Inc | Polipeptidos dise?ados de fenilalanina amonio liasa. |
| CN110831618B (zh) | 2017-04-27 | 2023-08-25 | 科德克希思公司 | 酮还原酶多肽及多核苷酸 |
| ES2887078T3 (es) | 2017-05-08 | 2021-12-21 | Codexis Inc | Variantes de ligasa diseñadas |
| EP3638688A4 (fr) | 2017-06-14 | 2021-07-07 | Codexis, Inc. | Polypeptides transaminase modifiés destinés à une biocatalyse industrielle |
| CN117737045A (zh) | 2017-06-27 | 2024-03-22 | 科德克希思公司 | 青霉素g酰化酶 |
| KR20250028535A (ko) | 2017-06-30 | 2025-02-28 | 코덱시스, 인코포레이티드 | T7 rna 폴리머라제 변이체 |
| EP3645712A4 (fr) | 2017-06-30 | 2021-07-07 | Codexis, Inc. | Variants d'arn polymérase t7 |
| EP3706780A4 (fr) | 2017-11-07 | 2021-12-22 | Codexis, Inc. | Variants de transglutaminase |
| JP2021506252A (ja) | 2017-12-13 | 2021-02-22 | コデクシス, インコーポレイテッド | アミドカップリングのためのカルボキシエステラーゼポリペプチド |
| EP3728620A4 (fr) | 2017-12-20 | 2021-11-03 | Basf Se | Procédé de mutagénèse de saturation de site génique (gssm) |
| US10900055B2 (en) | 2018-06-12 | 2021-01-26 | Codexis, Inc. | Engineered tyrosine ammonia lyase |
| IL279884B2 (en) | 2018-07-09 | 2026-04-01 | Codexis Inc | Engineered pantothenate kinase variant enzymes |
| AU2019302423B2 (en) | 2018-07-09 | 2024-11-21 | Codexis, Inc. | Engineered purine nucleoside phosphorylase variant enzymes |
| EP3821026A4 (fr) | 2018-07-09 | 2022-06-01 | Codexis, Inc. | Enzymes variantes de phosphopentomutase modifiées |
| EP3821015A4 (fr) | 2018-07-09 | 2022-07-13 | Codexis, Inc. | Désoxyribose-phosphate aldolases modifiées |
| SG11202012138XA (en) | 2018-07-09 | 2021-01-28 | Codexis Inc | Engineered galactose oxidase variant enzymes |
| JP2021531749A (ja) | 2018-07-12 | 2021-11-25 | コデクシス, インコーポレイテッド | 操作されたフェニルアラニンアンモニアリアーゼポリペプチド |
| WO2020028039A1 (fr) | 2018-07-30 | 2020-02-06 | Codexis, Inc. | Glycosyltransférases modifiées et procédés de glucosylation de glycosides de stéviol |
| AU2019373208A1 (en) | 2018-10-29 | 2021-05-13 | Codexis, Inc. | Engineered DNA polymerase variants |
| CA3122524A1 (fr) | 2018-12-14 | 2020-06-18 | Codexis, Inc. | Tyrosine ammonia-lyase modifiee |
| AU2019403323B2 (en) | 2018-12-20 | 2026-02-26 | Codexis, Inc. | Human alpha-galactosidase variants |
| CA3126671A1 (fr) | 2019-01-15 | 2020-07-23 | Codexis, Inc. | Polypeptides de transaminase modifies |
| CN114096662B (zh) | 2019-05-01 | 2025-04-15 | 科德克希思公司 | 工程化葡萄糖脱氢酶和用于酮和胺化合物的还原胺化的方法 |
| EP3963057A4 (fr) | 2019-05-01 | 2023-06-14 | Codexis, Inc. | Imine réductases manipulées et procédés d'amination réductrice de composés cétoniques et aminés |
| AU2020299358A1 (en) | 2019-07-02 | 2021-12-23 | Codexis, Inc. | Engineered acetate kinase variant enzymes |
| WO2021003132A1 (fr) | 2019-07-02 | 2021-01-07 | Codexis, Inc. | Enzymes variantes de saccharose phosphorylase modifiées |
| EP4501403A3 (fr) | 2019-08-30 | 2025-05-14 | Société des Produits Nestlé S.A. | Variantes de lipase modifiées |
| US12012620B2 (en) | 2019-09-12 | 2024-06-18 | Codexis, Inc. | Peroxidase activity towards 10-acetyl-3,7-dihydroxyphenoxazine |
| CN121780457A (zh) | 2019-11-26 | 2026-04-03 | 科德克希思公司 | 用于化学化合物的羟基化的生物催化剂和方法 |
| WO2021123008A1 (fr) | 2019-12-18 | 2021-06-24 | Basf Se | Procédé d'analyse et appareil d'analyse d'acides nucléiques |
| JP2023507575A (ja) | 2019-12-20 | 2023-02-24 | コデクシス, インコーポレイテッド | 操作された酸性アルファ-グルコシダーゼバリアント |
| JP2023512683A (ja) | 2020-02-04 | 2023-03-28 | コデクシス, インコーポレイテッド | 操作されたロイシンデカルボキシラーゼ |
| JP7747337B2 (ja) | 2020-04-10 | 2025-10-01 | コデクシス, インコーポレイテッド | 速度論的光学分割のためのカルボキシエステラーゼポリペプチド |
| EP4133064A4 (fr) | 2020-04-10 | 2024-07-24 | Codexis, Inc. | Polypeptides de transaminase modifiés |
| CN116897205A (zh) | 2020-08-28 | 2023-10-17 | 科德克希思公司 | 工程化淀粉酶变体 |
| AU2021334371A1 (en) | 2020-08-28 | 2023-03-09 | Codexis, Inc. | Engineered protease variants |
| WO2022133289A2 (fr) | 2020-12-18 | 2022-06-23 | Codexis, Inc. | Enzymes variantes d'uridine phosphorylase modifiées |
| US12180483B2 (en) | 2021-04-02 | 2024-12-31 | Codexis, Inc. | Engineered cyclic GMP-AMP synthase (cGAS) variant enzymes |
| IL305919A (en) | 2021-04-02 | 2023-11-01 | Codexis Inc | Engineered adenylate kinase variant enzymes |
| EP4314262A1 (fr) | 2021-04-02 | 2024-02-07 | Codexis, Inc. | Enzymes variantes de guanylate kinase modifiées |
| CA3215105A1 (fr) | 2021-04-02 | 2022-10-06 | Codexis, Inc. | Enzymes variantes d'acetate kinase modifiees |
| CA3220735A1 (fr) | 2021-05-21 | 2022-11-24 | Codexis, Inc. | Variants de methionine gamma lyase modifies |
| CA3234383A1 (fr) | 2021-10-15 | 2023-04-27 | Codexis, Inc. | Variants de desoxynucleotidyl transferase terminale modifiee |
| US12129495B2 (en) | 2021-10-15 | 2024-10-29 | Codexis, Inc. | Engineered DNA polymerase variants |
| JP2024540358A (ja) | 2021-11-01 | 2024-10-31 | シンティス バイオ,インコーポレイティド | 工学操作ロイシン脱炭酸酵素 |
| WO2024040020A1 (fr) | 2022-08-15 | 2024-02-22 | Absci Corporation | Enrichissement de cellule spécifique à une activité d'affinité quantitative |
| WO2025144700A1 (fr) | 2023-12-27 | 2025-07-03 | Absci Corporation | Criblage de banque de nanocorps à l'aide d'un affichage de surface bactérienne |
| WO2025235589A1 (fr) | 2024-05-08 | 2025-11-13 | Codexis, Inc. | Variants d'adn polymérase |
Family Cites Families (20)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DK51092D0 (da) | 1991-05-24 | 1992-04-15 | Ole Buchardt | Oligonucleotid-analoge betegnet pna, monomere synthoner og fremgangsmaade til fremstilling deraf samt anvendelser deraf |
| US5837458A (en) | 1994-02-17 | 1998-11-17 | Maxygen, Inc. | Methods and compositions for cellular and metabolic engineering |
| US6335160B1 (en) | 1995-02-17 | 2002-01-01 | Maxygen, Inc. | Methods and compositions for polypeptide engineering |
| US5605793A (en) | 1994-02-17 | 1997-02-25 | Affymax Technologies N.V. | Methods for in vitro recombination |
| US5696253A (en) | 1994-06-30 | 1997-12-09 | The Regents Of The University Of California | Polynucleoside chain with 3'→5' guanidyl linkages |
| FI104465B (fi) | 1995-06-14 | 2000-02-15 | Valio Oy | Proteiinihydrolysaatteja allergioiden hoitamiseksi tai estämiseksi, niiden valmistus ja käyttö |
| US6153410A (en) * | 1997-03-25 | 2000-11-28 | California Institute Of Technology | Recombination of polynucleotide sequences using random or defined primers |
| US6537746B2 (en) | 1997-12-08 | 2003-03-25 | Maxygen, Inc. | Method for creating polynucleotide and polypeptide sequences |
| CA2318880C (fr) * | 1998-02-04 | 2010-07-27 | Applied Biosystems, Llc | Determination d'un genotype d'un produit d'amplification sur des sites alleliques multiples |
| JP4221100B2 (ja) | 1999-01-13 | 2009-02-12 | エルピーダメモリ株式会社 | 半導体装置 |
| DE60029314T2 (de) | 1999-03-24 | 2007-07-12 | Exiqon A/S | Verbesserte Synthese für -2.2.1. I Bicyclo-Nukleoside |
| IL149694A0 (en) | 1999-12-23 | 2002-11-10 | Exiqon As | Therapeutic uses of lna-modified oligonucleotides |
| IL150291A0 (en) * | 2000-01-11 | 2002-12-01 | Maxygen Inc | Integrated systems and methods for diversity generation and screening |
| EP1272967A2 (fr) | 2000-03-30 | 2003-01-08 | Maxygen, Inc. | Selection de sites de recombinaison par enjambement in silico |
| JP2004508011A (ja) | 2000-04-03 | 2004-03-18 | マキシジェン, インコーポレイテッド | スブチリシン変異体 |
| FR2810339B1 (fr) * | 2000-06-14 | 2004-12-10 | Hoechst Marion Roussel Inc | Banques combinatoires ameliorees par recombinaison dans la levure et procede d'analyse |
| JP4413493B2 (ja) | 2000-10-04 | 2010-02-10 | サンタリス ファーマ アー/エス | プリンlna類似体の改善された合成方法 |
| JP4858932B2 (ja) * | 2002-03-19 | 2012-01-18 | 株式会社 東北テクノアーチ | 変異p53ライブラリー |
| CA2535255A1 (fr) | 2003-08-11 | 2005-02-24 | Codexis, Inc. | Deshalogenases d'halohydrine ameliorees et polynucleotides correspondants |
| JP2007502124A (ja) | 2003-08-11 | 2007-02-08 | コデクシス, インコーポレイテッド | 改良ケトレダクターゼポリペプチドおよび関連ポリヌクレオチド |
-
2009
- 2009-06-11 DK DK15199731.9T patent/DK3023494T3/en active
- 2009-06-11 ES ES15199731T patent/ES2705694T3/es active Active
- 2009-06-11 EP EP15199731.9A patent/EP3023494B1/fr active Active
- 2009-06-11 EP EP09763625.2A patent/EP2285958B1/fr active Active
- 2009-06-11 CA CA2726850A patent/CA2726850C/fr active Active
- 2009-06-11 HU HUE09763625A patent/HUE029228T2/en unknown
- 2009-06-11 CN CN2009801220932A patent/CN102066561B/zh active Active
- 2009-06-11 HU HUE15199731A patent/HUE041367T2/hu unknown
- 2009-06-11 WO PCT/US2009/047046 patent/WO2009152336A1/fr not_active Ceased
- 2009-06-11 DK DK09763625.2T patent/DK2285958T3/en active
- 2009-06-11 ES ES09763625.2T patent/ES2575005T3/es active Active
Also Published As
| Publication number | Publication date |
|---|---|
| ES2705694T3 (es) | 2019-03-26 |
| CN102066561A (zh) | 2011-05-18 |
| EP2285958A4 (fr) | 2012-02-01 |
| HUE041367T2 (hu) | 2019-05-28 |
| WO2009152336A1 (fr) | 2009-12-17 |
| CN102066561B (zh) | 2013-09-25 |
| CA2726850A1 (fr) | 2009-12-17 |
| EP2285958B1 (fr) | 2016-03-09 |
| EP3023494A1 (fr) | 2016-05-25 |
| EP2285958A1 (fr) | 2011-02-23 |
| HUE029228T2 (en) | 2017-02-28 |
| DK2285958T3 (en) | 2016-03-29 |
| DK3023494T3 (en) | 2019-02-25 |
| ES2575005T3 (es) | 2016-06-23 |
| EP3023494B1 (fr) | 2018-11-28 |
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