CA2869295A1 - Procedes faisant appel a la methylation de l'adn pour identifier une cellule ou un melange de cellules afin de pronostiquer et de diagnostiquer des maladies et pour effectuer des traitements de reparation cellulaire - Google Patents

Procedes faisant appel a la methylation de l'adn pour identifier une cellule ou un melange de cellules afin de pronostiquer et de diagnostiquer des maladies et pour effectuer des traitements de reparation cellulaire Download PDF

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Publication number
CA2869295A1
CA2869295A1 CA2869295A CA2869295A CA2869295A1 CA 2869295 A1 CA2869295 A1 CA 2869295A1 CA 2869295 A CA2869295 A CA 2869295A CA 2869295 A CA2869295 A CA 2869295A CA 2869295 A1 CA2869295 A1 CA 2869295A1
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Canada
Prior art keywords
methylation
dna
cell
cells
cpg
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Abandoned
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CA2869295A
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English (en)
Inventor
Karl KELSEY
Eugene Andres Houseman
John WIENCKE
William P. Accomando, Jr.
Carmen MARSIT
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Brown University
University of California San Diego UCSD
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Brown University
University of California San Diego UCSD
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Publication date
Application filed by Brown University, University of California San Diego UCSD filed Critical Brown University
Publication of CA2869295A1 publication Critical patent/CA2869295A1/fr
Abandoned legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/10Ploidy or copy number detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30Unsupervised data analysis
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/154Methylation markers
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis

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  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical & Material Sciences (AREA)
  • Medical Informatics (AREA)
  • Biotechnology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Analytical Chemistry (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Molecular Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Zoology (AREA)
  • Artificial Intelligence (AREA)
  • Software Systems (AREA)
  • Pathology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

La présente invention concerne des procédés faisant appel à des réseaux de méthylation d'ADN pour identifier une cellule ou un mélange de cellules et pour quantifier les modifications de distribution de cellules dans le sang ou dans les tissus, et pour diagnostiquer, pronostiquer et traiter des maladies, en particulier un cancer. Les procédés utilisent des échantillons fraîchement prélevés et stockés.
CA2869295A 2011-05-25 2012-05-25 Procedes faisant appel a la methylation de l'adn pour identifier une cellule ou un melange de cellules afin de pronostiquer et de diagnostiquer des maladies et pour effectuer des traitements de reparation cellulaire Abandoned CA2869295A1 (fr)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US201161489883P 2011-05-25 2011-05-25
US61/489,883 2011-05-25
US201161509644P 2011-07-20 2011-07-20
US61/509,644 2011-07-20
US201261585892P 2012-01-12 2012-01-12
US61/585,892 2012-01-12
US201261619663P 2012-04-03 2012-04-03
US61/619,663 2012-04-03
PCT/US2012/039699 WO2012162660A2 (fr) 2011-05-25 2012-05-25 Procédés faisant appel à la méthylation de l'adn pour identifier une cellule ou un mélange de cellules afin de pronostiquer et de diagnostiquer des maladies et pour effectuer des traitements de réparation cellulaire

Publications (1)

Publication Number Publication Date
CA2869295A1 true CA2869295A1 (fr) 2012-11-29

Family

ID=47218125

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2869295A Abandoned CA2869295A1 (fr) 2011-05-25 2012-05-25 Procedes faisant appel a la methylation de l'adn pour identifier une cellule ou un melange de cellules afin de pronostiquer et de diagnostiquer des maladies et pour effectuer des traitements de reparation cellulaire

Country Status (3)

Country Link
EP (1) EP2714933A4 (fr)
CA (1) CA2869295A1 (fr)
WO (1) WO2012162660A2 (fr)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9561006B2 (en) * 2008-10-15 2017-02-07 The United States Of America As Represented By The Secretary Of The Navy Bayesian modeling of pre-transplant variables accurately predicts kidney graft survival
EP3382033B1 (fr) * 2017-03-30 2020-08-05 Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen Méthode pour déterminer le nombre des cellules sanguines basée sur la méthylation de l'adn
DE102017125019B4 (de) 2017-10-25 2019-10-17 Epiontis Gmbh PDCD1 als epigenetischer Marker zur Identifizierung von Immunzellen, insbesondere PD1+ Zellen
DE102017125013B4 (de) 2017-10-25 2019-10-17 Epiontis Gmbh MCC als epigenetischer Marker zur Identifizierung von Immunzellen, insbesondere basophiler Granulozyten
DE102017125150B4 (de) 2017-10-26 2019-10-10 Epiontis Gmbh Endosialin (CD248) als epigenetischer Marker zur Identifizierung von Immunzellen, insbesondere naïver CD8+ T-Zellen
DE102017125335B4 (de) 2017-10-27 2019-10-17 Epiontis Gmbh Amplikon-Region als epigenetischer Marker zur Identifizierung von Immunzellen, insbesondere nicht-klassischer Monozyten
DE102017126248B4 (de) 2017-11-09 2019-10-17 Epiontis Gmbh ERGIC1 als epigenetischer Marker zur Identifizierung von Immunzellen, insbesonderemonozytischem myeloid-abgeleiteten Suppressor-Zellen (mMDSCs)
DE102018112644B4 (de) 2018-05-25 2020-06-10 Epiontis Gmbh CXCR3 als epigenetischer Marker zur Identifizierung von inflammatorischen Immunzellen, insbesondere CD8+ Gedächnis-T-Zellen
EP3818179B1 (fr) 2018-07-05 2023-07-19 Precision for Medicine GmbH Méthode épigénétique pour détecter et faire la distinction entre des syndromes ipex et des syndromes de type ipex, en particulier chez les nouveau-nés
DE102020108560B4 (de) 2020-03-27 2022-03-03 Precision For Medicine Gmbh CBX6 als epigenetischer Marker für die Identifizierung von Immunzellen, insbesondere Gedächtnis-B-Zellen
DE102020111423B4 (de) 2020-04-27 2022-03-03 Precision For Medicine Gmbh MYH11/NDE1 Region als epigenetischer Marker für die Identifizierung von Endothel-Vorläuferzellen (EPCs)
MX2023007012A (es) 2020-12-14 2023-06-27 Regeneron Pharma Metodos para tratar los trastornos metabolicos y las enfermedades cardiovasculares con inhibidores de la subunidad beta e de la inhibina (inhbe).
CN114703284A (zh) * 2022-04-15 2022-07-05 北京莱盟君泰国际医疗技术开发有限公司 一种血液游离dna甲基化定量检测方法及其应用
WO2024073508A2 (fr) * 2022-09-27 2024-04-04 Guardant Health, Inc. Procédés et compositions de quantification d'adn de cellules immunitaires
CN116312794B (zh) * 2023-01-09 2023-11-14 哈尔滨医科大学 一种融合单细胞分析方法的甲基化样本聚类方法
DE102023114015B3 (de) 2023-05-26 2024-09-12 Precision For Medicine Gmbh ITGA4 als epigenetischer Marker für die Identifizierung von Immunzellen
DE102023114016B3 (de) 2023-05-26 2024-09-12 Precision For Medicine Gmbh LAG3 als epigenetischer Marker für die Identifizierung von Immunzellen
DE102023114004B3 (de) 2023-05-26 2024-09-12 Precision For Medicine Gmbh GATA 3 als epigenetischer Marker zur Identifizierung von Immunzellen
DE102023114008B3 (de) 2023-05-26 2024-09-12 Precision For Medicine Gmbh CRTH2 (PTGDR2) als epigenetischer Marker zur Identifizierung von Immunzellen
US20240410006A1 (en) * 2023-06-12 2024-12-12 Tru Diagnostics, Inc. Method for Predicting Health of a Human Subject
CN116949156B (zh) * 2023-09-19 2023-12-08 美迪西普亚医药科技(上海)有限公司 一种基于核酸变体的通用型检测人t细胞的分析方法

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070243161A1 (en) * 2006-02-28 2007-10-18 Sven Olek Epigenetic modification of the loci for CAMTA1 and/or FOXP3 as a marker for cancer treatment
EP2199411B1 (fr) * 2008-12-16 2015-05-06 Epiontis GmbH Marqueurs épigénétiques pour l'identification des lymphocytes T CD3+

Also Published As

Publication number Publication date
WO2012162660A2 (fr) 2012-11-29
EP2714933A2 (fr) 2014-04-09
WO2012162660A3 (fr) 2013-03-28
EP2714933A4 (fr) 2014-12-31

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