CA3036994A1 - Methode et systeme de caracterisations de panel - Google Patents

Methode et systeme de caracterisations de panel Download PDF

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Publication number
CA3036994A1
CA3036994A1 CA3036994A CA3036994A CA3036994A1 CA 3036994 A1 CA3036994 A1 CA 3036994A1 CA 3036994 A CA3036994 A CA 3036994A CA 3036994 A CA3036994 A CA 3036994A CA 3036994 A1 CA3036994 A1 CA 3036994A1
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Canada
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species
panel
genus
taxa
features
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CA3036994A
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CA3036994C (fr
Inventor
Daniel Almonacid
Laurens KRAAL
Francisco OSSANDON
Juan Pablo Cardenas
Jessica RICHMAN
Zachary APTE
Elisabeth BIK
Audrey Goddard
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Psomagen Inc
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uBiome Inc
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    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
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    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B1/00—Instruments for performing medical examinations of the interior of cavities or tubes of the body by visual or photographical inspection, e.g. endoscopes; Illuminating arrangements therefor
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
    • A61P1/10—Laxatives
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    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
    • A61P1/12—Antidiarrhoeals
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    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
    • A61P1/14—Prodigestives, e.g. acids, enzymes, appetite stimulants, antidyspeptics, tonics, antiflatulents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61P13/00—Drugs for disorders of the urinary system
    • A61P13/12—Drugs for disorders of the urinary system of the kidneys
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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    • A61P29/00—Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
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    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
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    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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    • G—PHYSICS
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    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
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  • Health & Medical Sciences (AREA)
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  • Chemical & Material Sciences (AREA)
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  • Bioinformatics & Computational Biology (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • Epidemiology (AREA)
  • Data Mining & Analysis (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Diabetes (AREA)
  • Hematology (AREA)
  • Primary Health Care (AREA)
  • Urology & Nephrology (AREA)
  • Immunology (AREA)
  • Surgery (AREA)
  • Heart & Thoracic Surgery (AREA)
  • Zoology (AREA)

Abstract

Certains modes de réalisation d'un système et d'une méthode de caractérisation d'un panel de conditions associées à un ensemble de taxa relatifs à des micro-organismes peuvent faire appel à une base de données taxinomique comprenant des caractéristiques de microbiome de référence concernant l'ensemble de taxa associé au panel de conditions ; un système de manipulation pouvant servir à collecter un contenant comprenant un matériel biologique provenant d'un utilisateur, le système de manipulation comprenant un système séquenceur pouvant servir à déterminer un ensemble de données de séquences de micro-organismes ; et un système de caractérisation de panel pouvant servir à : déterminer des caractéristiques de microbiome d'utilisateur de l'ensemble de taxa pour l'utilisateur sur la base de l'ensemble de données de séquences de micro-organismes, générer une comparaison entre les caractéristiques de microbiome d'utilisateur et les caractéristiques de microbiome de référence, et déterminer une caractérisation de panel du panel de conditions pour l'utilisateur sur la base de la comparaison ; et un système de traitement pouvant servir à promouvoir une thérapie pour une condition du panel de conditions sur la base de la caractérisation de panel.
CA3036994A 2016-09-16 2017-09-18 Methode et systeme de caracterisations de panel Active CA3036994C (fr)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US201662395939P 2016-09-16 2016-09-16
US62/395,939 2016-09-16
US15/606,743 2017-05-26
US15/606,743 US10803991B2 (en) 2014-10-21 2017-05-26 Method and system for microbiome-derived diagnostics and therapeutics
US201762520058P 2017-06-15 2017-06-15
US62/520,058 2017-06-15
US201762525379P 2017-06-27 2017-06-27
US62/525,379 2017-06-27
PCT/US2017/052098 WO2018053443A1 (fr) 2016-09-16 2017-09-18 Méthode et système de caractérisations de panel

Publications (2)

Publication Number Publication Date
CA3036994A1 true CA3036994A1 (fr) 2018-03-22
CA3036994C CA3036994C (fr) 2026-01-27

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Also Published As

Publication number Publication date
JP7114091B2 (ja) 2022-08-08
SG11201901726QA (en) 2019-03-28
KR102486181B1 (ko) 2023-01-06
BR112019005025A2 (pt) 2019-06-18
EP3512421A4 (fr) 2021-08-11
BR112019005025A8 (pt) 2023-03-21
CN109715059A (zh) 2019-05-03
ZA201901371B (en) 2019-11-27
CO2019003713A2 (es) 2019-04-30
JP2019528729A (ja) 2019-10-17
KR20190055127A (ko) 2019-05-22
EP3512421A1 (fr) 2019-07-24
AU2017326564A1 (en) 2019-03-28
WO2018053443A1 (fr) 2018-03-22

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