DK3230465T3 - Genomarkitekturkortlægning - Google Patents

Genomarkitekturkortlægning Download PDF

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Publication number
DK3230465T3
DK3230465T3 DK15808219.8T DK15808219T DK3230465T3 DK 3230465 T3 DK3230465 T3 DK 3230465T3 DK 15808219 T DK15808219 T DK 15808219T DK 3230465 T3 DK3230465 T3 DK 3230465T3
Authority
DK
Denmark
Prior art keywords
genome architecture
architecture mapping
mapping
genome
architecture
Prior art date
Application number
DK15808219.8T
Other languages
English (en)
Inventor
Ana Pombo
Paul Edwards
Mario Nicodemi
Antonio Scialdone
Robert Beagrie
Original Assignee
Max Delbrueck Centrum Fuer Molekulare Medizin Helmholtz Gemeinschaft
Cambridge Entpr Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Max Delbrueck Centrum Fuer Molekulare Medizin Helmholtz Gemeinschaft, Cambridge Entpr Ltd filed Critical Max Delbrueck Centrum Fuer Molekulare Medizin Helmholtz Gemeinschaft
Application granted granted Critical
Publication of DK3230465T3 publication Critical patent/DK3230465T3/da

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/40—Population genetics; Linkage disequilibrium

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Physics & Mathematics (AREA)
  • Organic Chemistry (AREA)
  • Biotechnology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biomedical Technology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • Ecology (AREA)
  • Physiology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
DK15808219.8T 2014-12-11 2015-12-11 Genomarkitekturkortlægning DK3230465T3 (da)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP14197405.5A EP3031929A1 (en) 2014-12-11 2014-12-11 Genome architecture mapping
PCT/EP2015/079413 WO2016092070A1 (en) 2014-12-11 2015-12-11 Genome architecture mapping

Publications (1)

Publication Number Publication Date
DK3230465T3 true DK3230465T3 (da) 2020-01-27

Family

ID=52102530

Family Applications (1)

Application Number Title Priority Date Filing Date
DK15808219.8T DK3230465T3 (da) 2014-12-11 2015-12-11 Genomarkitekturkortlægning

Country Status (8)

Country Link
US (1) US10526639B2 (da)
EP (2) EP3031929A1 (da)
JP (1) JP6837970B2 (da)
CN (1) CN107406873B (da)
CA (1) CA2968629C (da)
DK (1) DK3230465T3 (da)
IL (1) IL252591B (da)
WO (1) WO2016092070A1 (da)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2018132518A1 (en) 2017-01-10 2018-07-19 Juno Therapeutics, Inc. Epigenetic analysis of cell therapy and related methods
CA3052290A1 (en) 2017-02-10 2018-08-16 The Rockefeller University Methods for cell-type specific profiling to identify drug targets
CN108647492B (zh) * 2018-05-02 2019-04-16 中国人民解放军军事科学院军事医学研究院 一种染色质拓扑相关结构域的表征方法及装置
CN109448783B (zh) * 2018-08-07 2022-05-13 清华大学 一种染色质拓扑结构域边界的分析方法
WO2021167986A1 (en) 2020-02-17 2021-08-26 10X Genomics, Inc. In situ analysis of chromatin interaction
KR20230016627A (ko) * 2020-04-23 2023-02-02 코닌클리즈케 네덜란드세 아카데미 반 베텐샤펜 염색체 근접성 실험에서 구조적 변이 검출
EP3988669A1 (en) * 2020-10-22 2022-04-27 Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft Method for nucleic acid detection by oligo hybridization and pcr-based amplification
CN115050417B (zh) * 2022-06-27 2024-07-19 华南农业大学 一种基于染色质随机折叠过程预测染色质域结构tad的方法

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7625697B2 (en) * 1994-06-17 2009-12-01 The Board Of Trustees Of The Leland Stanford Junior University Methods for constructing subarrays and subarrays made thereby
AU2006264564B2 (en) 2005-07-04 2012-04-19 Erasmus University Medical Center Chromosome conformation capture-on-chip (4c) assay
GB0810051D0 (en) * 2008-06-02 2008-07-09 Oxford Biodynamics Ltd Method of diagnosis
JP5685195B2 (ja) * 2008-12-02 2015-03-18 バイオ−ラッド ラボラトリーズ インコーポレーティッド クロマチン構造の検出方法
CA2826384C (en) * 2011-02-04 2020-08-04 The Trustees Of The University Of Pennsylvania A method for detecting chromosome structure and gene expression simultaneously in single cells
US20140073520A1 (en) * 2011-12-23 2014-03-13 California Institute Of Technology Imaging chromosome structures by super-resolution fish with single-dye labeled oligonucleotides
US10059989B2 (en) * 2013-05-23 2018-08-28 The Board Of Trustees Of The Leland Stanford Junior University Transposition of native chromatin for personal epigenomics

Also Published As

Publication number Publication date
JP2017537640A (ja) 2017-12-21
US20170342462A1 (en) 2017-11-30
EP3230465A1 (en) 2017-10-18
IL252591A0 (en) 2017-07-31
CA2968629A1 (en) 2016-06-16
CA2968629C (en) 2023-01-03
WO2016092070A1 (en) 2016-06-16
CN107406873A (zh) 2017-11-28
EP3031929A1 (en) 2016-06-15
CN107406873B (zh) 2021-07-09
EP3230465B1 (en) 2019-10-16
IL252591B (en) 2022-01-01
JP6837970B2 (ja) 2021-03-03
US10526639B2 (en) 2020-01-07

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