DK3234200T3 - Fremgangsmåde til målrettet depletering af nukleinsyrer ved anvendelse af CRISPR/CAS-systemproteiner - Google Patents

Fremgangsmåde til målrettet depletering af nukleinsyrer ved anvendelse af CRISPR/CAS-systemproteiner Download PDF

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DK3234200T3
DK3234200T3 DK15871259.6T DK15871259T DK3234200T3 DK 3234200 T3 DK3234200 T3 DK 3234200T3 DK 15871259 T DK15871259 T DK 15871259T DK 3234200 T3 DK3234200 T3 DK 3234200T3
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crispr
nucleic acids
cas system
system proteins
targeted depletion
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Meredith L Carpenter
Carlos D Bustamante
Stephane B Gourguechon
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Arc Bio Llc
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12N9/14Hydrolases (3)
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    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22Ribonucleases [RNase]; Deoxyribonucleases [DNase]
    • C12N9/222Clustered regularly interspaced short palindromic repeats [CRISPR]-associated [CAS] enzymes
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
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    • C12N2310/00Structure or type of the nucleic acid
    • C12N2310/10Type of nucleic acid
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    • C12N2800/00Nucleic acids vectors
    • C12N2800/80Vectors containing sites for inducing double-stranded breaks, e.g. meganuclease restriction sites

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DK15871259.6T 2014-12-20 2015-12-19 Fremgangsmåde til målrettet depletering af nukleinsyrer ved anvendelse af CRISPR/CAS-systemproteiner DK3234200T3 (da)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201462094980P 2014-12-20 2014-12-20
US201562198097P 2015-07-28 2015-07-28
PCT/US2015/066949 WO2016100955A2 (en) 2014-12-20 2015-12-19 Compositions and methods for targeted depletion, enrichment, and partitioning of nucleic acids using crispr/cas system proteins

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DK3234200T3 true DK3234200T3 (da) 2021-08-23

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US (4) US10774365B2 (da)
EP (2) EP3234200B1 (da)
JP (3) JP6947638B2 (da)
CN (2) CN114438169B (da)
AU (2) AU2015364286B2 (da)
CA (1) CA2971444A1 (da)
DK (1) DK3234200T3 (da)
WO (1) WO2016100955A2 (da)

Families Citing this family (111)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP6261500B2 (ja) 2011-07-22 2018-01-17 プレジデント アンド フェローズ オブ ハーバード カレッジ ヌクレアーゼ切断特異性の評価および改善
EP4372084A3 (en) 2012-01-26 2024-08-14 Tecan Genomics, Inc. Compositions and methods for targeted nucleic acid sequence enrichment and high efficiency library generation
US20150011396A1 (en) 2012-07-09 2015-01-08 Benjamin G. Schroeder Methods for creating directional bisulfite-converted nucleic acid libraries for next generation sequencing
US20150044192A1 (en) 2013-08-09 2015-02-12 President And Fellows Of Harvard College Methods for identifying a target site of a cas9 nuclease
US9359599B2 (en) 2013-08-22 2016-06-07 President And Fellows Of Harvard College Engineered transcription activator-like effector (TALE) domains and uses thereof
US9388430B2 (en) 2013-09-06 2016-07-12 President And Fellows Of Harvard College Cas9-recombinase fusion proteins and uses thereof
US9526784B2 (en) 2013-09-06 2016-12-27 President And Fellows Of Harvard College Delivery system for functional nucleases
US9340799B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College MRNA-sensing switchable gRNAs
US20150165054A1 (en) 2013-12-12 2015-06-18 President And Fellows Of Harvard College Methods for correcting caspase-9 point mutations
PL3102722T3 (pl) 2014-02-04 2021-03-08 Jumpcode Genomics, Inc. Frakcjonowanie genomu
EP4063503A1 (en) 2014-02-11 2022-09-28 The Regents of the University of Colorado, a body corporate Crispr enabled multiplexed genome engineering
WO2015122967A1 (en) 2014-02-13 2015-08-20 Clontech Laboratories, Inc. Methods of depleting a target molecule from an initial collection of nucleic acids, and compositions and kits for practicing the same
WO2016022363A2 (en) 2014-07-30 2016-02-11 President And Fellows Of Harvard College Cas9 proteins including ligand-dependent inteins
WO2016057951A2 (en) * 2014-10-09 2016-04-14 Life Technologies Corporation Crispr oligonucleotides and gene editing
CA2971444A1 (en) 2014-12-20 2016-06-23 Arc Bio, Llc Compositions and methods for targeted depletion, enrichment, and partitioning of nucleic acids using crispr/cas system proteins
WO2016138292A1 (en) 2015-02-25 2016-09-01 Igenomx International Genomics Corporation Methods and compositions for in silico long read sequencing
AU2016308283B2 (en) * 2015-08-19 2022-04-21 Arc Bio, Llc Capture of nucleic acids using a nucleic acid-guided nuclease-based system
JP7109784B2 (ja) 2015-10-23 2022-08-01 プレジデント アンド フェローズ オブ ハーバード カレッジ 遺伝子編集のための進化したCas9蛋白質
CN109310784B (zh) * 2015-12-07 2022-08-19 阿克生物公司 用于制备和使用指导核酸的方法和组合物
US11339427B2 (en) 2016-02-12 2022-05-24 Jumpcode Genomics, Inc. Method for target specific RNA transcription of DNA sequences
US10017760B2 (en) 2016-06-24 2018-07-10 Inscripta, Inc. Methods for generating barcoded combinatorial libraries
KR102547316B1 (ko) 2016-08-03 2023-06-23 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 아데노신 핵염기 편집제 및 그의 용도
US11661590B2 (en) 2016-08-09 2023-05-30 President And Fellows Of Harvard College Programmable CAS9-recombinase fusion proteins and uses thereof
US11046995B2 (en) * 2016-08-16 2021-06-29 The Regents Of The University Of California Method for finding low abundance sequences by hybridization (FLASH)
US11542509B2 (en) 2016-08-24 2023-01-03 President And Fellows Of Harvard College Incorporation of unnatural amino acids into proteins using base editing
KR101964746B1 (ko) * 2016-09-07 2019-04-03 울산대학교 산학협력단 dCas9 단백질 및 표적 핵산 서열에 결합하는 gRNA를 이용한 핵산 검출의 민감도 및 특이도 향상용 조성물 및 방법
EA201990599A1 (ru) 2016-09-27 2019-10-31 Способ и система для получения и секвенирования библиотеки на основе crispr
EP3526320A1 (en) 2016-10-14 2019-08-21 President and Fellows of Harvard College Aav delivery of nucleobase editors
WO2018119359A1 (en) 2016-12-23 2018-06-28 President And Fellows Of Harvard College Editing of ccr5 receptor gene to protect against hiv infection
GB2559118B (en) * 2017-01-19 2021-07-07 Agency For Science Tech And Research Astarstar Method for normalizing a nucleic acid sample
NZ755816A (en) 2017-01-19 2026-03-27 Omniab Inc Human antibodies from transgenic rodents with multiple heavy chain immunoglobulin loci
EP3592853A1 (en) 2017-03-09 2020-01-15 President and Fellows of Harvard College Suppression of pain by gene editing
JP2020510038A (ja) 2017-03-09 2020-04-02 プレジデント アンド フェローズ オブ ハーバード カレッジ がんワクチン
JP2020510439A (ja) 2017-03-10 2020-04-09 プレジデント アンド フェローズ オブ ハーバード カレッジ シトシンからグアニンへの塩基編集因子
CA3057192A1 (en) 2017-03-23 2018-09-27 President And Fellows Of Harvard College Nucleobase editors comprising nucleic acid programmable dna binding proteins
JP2020515250A (ja) 2017-04-07 2020-05-28 セージ サイエンス, インコーポレイテッド 統合型電気泳動dna精製を使用する遺伝的構造変動を検出するためのシステムおよび方法
WO2018209320A1 (en) 2017-05-12 2018-11-15 President And Fellows Of Harvard College Aptazyme-embedded guide rnas for use with crispr-cas9 in genome editing and transcriptional activation
CN109526228B (zh) * 2017-05-26 2022-11-25 10X基因组学有限公司 转座酶可接近性染色质的单细胞分析
AU2018279112B2 (en) * 2017-06-07 2024-11-07 Arc Bio, Llc Creation and use of guide nucleic acids
US10947599B2 (en) 2017-06-13 2021-03-16 Genetics Research, Llc Tumor mutation burden
CA3222176A1 (en) 2017-06-13 2018-12-20 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Isolation of target nucleic acids
US10527608B2 (en) 2017-06-13 2020-01-07 Genetics Research, Llc Methods for rare event detection
US10081829B1 (en) 2017-06-13 2018-09-25 Genetics Research, Llc Detection of targeted sequence regions
US10011849B1 (en) 2017-06-23 2018-07-03 Inscripta, Inc. Nucleic acid-guided nucleases
US9982279B1 (en) 2017-06-23 2018-05-29 Inscripta, Inc. Nucleic acid-guided nucleases
US20190048425A1 (en) * 2017-06-28 2019-02-14 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Tumor detection and monitoring
US20190002964A1 (en) * 2017-06-28 2019-01-03 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Bodily fluid target enrichment
US20190085318A1 (en) * 2017-06-28 2019-03-21 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Solid phase negative enrichment
US20190071716A1 (en) * 2017-06-28 2019-03-07 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Bodily fluid enrichment
CN107190008A (zh) * 2017-07-19 2017-09-22 苏州吉赛基因测序科技有限公司 一种基于Crispr/cas9的捕获基因组目标序列的方法及其在高通量测序中的应用
WO2019023680A1 (en) 2017-07-28 2019-01-31 President And Fellows Of Harvard College METHODS AND COMPOSITIONS FOR EVOLUTION OF BASIC EDITORS USING PHAGE-ASSISTED CONTINUOUS EVOLUTION (PACE)
WO2019030306A1 (en) * 2017-08-08 2019-02-14 Depixus ISOLATION AND IN VITRO ENRICHMENT OF NUCLEIC ACIDS USING SITE-SPECIFIC NUCLEASES
EP3676376B1 (en) 2017-08-30 2025-01-15 President and Fellows of Harvard College High efficiency base editors comprising gam
KR20250107288A (ko) 2017-10-16 2025-07-11 더 브로드 인스티튜트, 인코퍼레이티드 아데노신 염기 편집제의 용도
CN107893260B (zh) * 2017-11-27 2021-01-12 广州市锐博生物科技有限公司 高效去除核糖体rna的构建转录组测序文库的方法及试剂盒
WO2019118949A1 (en) 2017-12-15 2019-06-20 The Broad Institute, Inc. Systems and methods for predicting repair outcomes in genetic engineering
EP3722422B1 (en) * 2018-01-03 2022-07-06 Cure Genetics Co., Ltd Method for isolating dna by using cas protein system
KR102086689B1 (ko) * 2018-02-06 2020-03-09 주식회사 진씨커 돌연변이 세포 유리 유전자 분리 키트 및 이를 이용한 돌연변이 세포 유리 유전자 분리 방법
CA3093846A1 (en) * 2018-03-15 2019-09-19 Twinstrand Biosciences, Inc. Methods and reagents for enrichment of nucleic acid material for sequencing applications and other nucleic acid material interrogations
US11649481B2 (en) 2018-03-19 2023-05-16 Illumina, Inc. Methods and compositions for recombinase-mediated selective cleavage of nucleic acids
AU2019239623B2 (en) * 2018-03-19 2022-03-10 Illumina, Inc. Methods and compositions for selective cleavage of nucleic acids with recombinant nucleases
EP3797160A1 (en) 2018-05-23 2021-03-31 The Broad Institute Inc. Base editors and uses thereof
AU2019282812B2 (en) 2018-06-07 2025-08-14 Arc Bio, Llc Compositions and methods for making guide nucleic acids
EP3587590A1 (en) * 2018-06-21 2020-01-01 Progenika Biopharma, S.A. Nucleic acid depletion and detection
US12522807B2 (en) 2018-07-09 2026-01-13 The Broad Institute, Inc. RNA programmable epigenetic RNA modifiers and uses thereof
CN109182454A (zh) * 2018-08-22 2019-01-11 杭州恺思医疗器械有限公司 一种捕获基因组特定dna片段的方法
EP3850088A4 (en) 2018-09-07 2023-07-19 Beam Therapeutics, Inc. Compositions and methods for improving base editing
IL281982B2 (en) 2018-10-04 2025-12-01 Arc Bio Llc Normalization controls for managing low sample inputs in next generation sequencing
WO2020092453A1 (en) 2018-10-29 2020-05-07 The Broad Institute, Inc. Nucleobase editors comprising geocas9 and uses thereof
EP3650555B1 (en) * 2018-11-07 2024-02-21 Siemens Healthineers AG Target irrelevant guide rna for crispr
CA3120176A1 (en) * 2018-11-16 2020-05-22 Depixus Optimization of in vitro isolation of nucleic acids using site-specific nucleases
EP3887538A1 (en) * 2018-11-28 2021-10-06 Keygene N.V. Targeted enrichment by endonuclease protection
ES2921401T3 (es) * 2018-12-12 2022-08-25 Depixus Método de enriquecimiento de ácidos nucleicos usando nucleasas específicas de sitio seguido de captura
CN109652861A (zh) * 2018-12-22 2019-04-19 阅尔基因技术(苏州)有限公司 一种生化试剂盒及其应用方法
US12351837B2 (en) 2019-01-23 2025-07-08 The Broad Institute, Inc. Supernegatively charged proteins and uses thereof
KR20210121113A (ko) * 2019-01-31 2021-10-07 빔 테라퓨틱스, 인크. 비-표적 탈아미노화가 감소된 핵염기 편집기 및 핵염기 편집기를 특성규명하기 위한 분석
WO2020167795A1 (en) * 2019-02-12 2020-08-20 Jumpcode Genomics, Inc. Methods for targeted depletion of nucleic acids
WO2020168122A1 (en) 2019-02-13 2020-08-20 Beam Therapeutics Inc. Modified immune cells having adenosine deaminase base editors for modifying a nucleobase in a target sequence
US11224850B2 (en) 2019-02-20 2022-01-18 Genetics Research, Llc Regulated multiplex reactions in a single tube
JP7657726B2 (ja) 2019-03-19 2025-04-07 ザ ブロード インスティテュート,インコーポレーテッド 編集ヌクレオチド配列を編集するための方法および組成物
CA3136228A1 (en) 2019-04-09 2020-10-15 Arc Bio, Llc Compositions and methods for nucleotide modification-based depletion
US12473543B2 (en) 2019-04-17 2025-11-18 The Broad Institute, Inc. Adenine base editors with reduced off-target effects
CN110041109A (zh) * 2019-04-22 2019-07-23 刘坚 一种猪粪源生物肥的制备方法
CN110093409B (zh) * 2019-04-26 2020-11-24 南京世和基因生物技术股份有限公司 一种基于高通量测序的感染线检测方法以及试剂盒
CN110205318A (zh) * 2019-05-15 2019-09-06 杭州杰毅生物技术有限公司 基于CRISPR-Cas去除宿主基因组DNA的宏基因组提取方法
CN110272921A (zh) * 2019-06-20 2019-09-24 武汉百翼生物科技有限公司 一种安全高效的CRISPR/Cas9基因编辑方法
MX2021014861A (es) 2019-06-25 2022-06-22 Inari Agriculture Tech Inc Edicion genomica de reparacion dependiente de homologia mejorada.
US20210040537A1 (en) * 2019-08-08 2021-02-11 Genetics Research, Llc Selective enrichment
US20210079481A1 (en) * 2019-09-16 2021-03-18 Stitch Bio, Llc Diagnostic assay for cancer
EP4034138A4 (en) 2019-09-27 2024-07-31 Beam Therapeutics, Inc. COMPOSITIONS AND METHODS FOR THE TREATMENT OF LIQUID CANCERS
US12435330B2 (en) 2019-10-10 2025-10-07 The Broad Institute, Inc. Methods and compositions for prime editing RNA
CN115279898A (zh) * 2019-10-23 2022-11-01 成对植物服务股份有限公司 用于植物中rna模板化编辑的组合物和方法
EP3816299A1 (en) * 2019-10-31 2021-05-05 Siemens Healthcare GmbH A method to prepare personalized target-irrelevant guide rna for crispr
WO2021108557A1 (en) * 2019-11-27 2021-06-03 Stitch Bio, Llc Methods and compositions for inducing tumor cell death
CN115298323A (zh) * 2020-01-17 2022-11-04 嘉普科德基因组学公司 靶向测序方法
IL295011A (en) * 2020-01-27 2022-09-01 Sherlock Biosciences Inc Improved detection tests
CN111471745B (zh) * 2020-03-30 2021-09-07 华中农业大学 基于CRISPR/Cas9系统介导的DNA靶向捕获方法
DE112021002672T5 (de) 2020-05-08 2023-04-13 President And Fellows Of Harvard College Vefahren und zusammensetzungen zum gleichzeitigen editieren beider stränge einer doppelsträngigen nukleotid-zielsequenz
WO2022035950A2 (en) * 2020-08-12 2022-02-17 Jumpcode Genomics, Inc. Methods for targeted depletion of nucleic acids
AU2021347359A1 (en) 2020-09-25 2023-05-18 Beam Therapeutics Inc. Fratricide resistant modified immune cells and methods of using the same
WO2022074058A1 (en) * 2020-10-06 2022-04-14 Keygene N.V. Targeted sequence addition
US20240002904A1 (en) * 2020-11-24 2024-01-04 Keygene N.V. Targeted enrichment using nanopore selective sequencing
CA3209074A1 (en) * 2021-03-09 2022-09-15 Andrew Kennedy Genomic library preparation and targeted epigenetic assays using cas-grna ribonucleoproteins
US20240309362A1 (en) * 2021-07-07 2024-09-19 Arc Bio, Llc Non-ribosomal sequence enrichment and single-stranded dna library for nucleic acid guided nuclease targeting
CN115806978B (zh) * 2021-09-14 2026-02-27 中国农业大学 异源染色体定向转移的方法
CN119013418A (zh) * 2022-03-10 2024-11-22 麦克诺玛公司 通过靶向微生物扩增子测序获得的疾病分类器
WO2024059516A1 (en) * 2022-09-12 2024-03-21 Jumpcode Genomics, Inc. Methods for generating cdna library from rna
EP4599059A4 (en) 2022-10-21 2026-03-04 Watchmaker Genomics Inc METHODS AND COMPOSITIONS FOR NORMALIZING SEQUALIZATION LIBRARIES
CN115772555A (zh) * 2022-11-30 2023-03-10 杭州杰毅生物技术有限公司 一种利用dCas13去除核糖体RNA序列的方法
CN119307590A (zh) * 2023-07-14 2025-01-14 清华大学 用于微生物检测的样品制备方法、样品、检测方法、试剂盒及应用
CN117551746B (zh) * 2023-12-01 2024-08-27 北京博奥医学检验所有限公司 一种检测目标核酸及其邻近区域核酸序列的方法

Family Cites Families (44)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5948902A (en) 1997-11-20 1999-09-07 South Alabama Medical Science Foundation Antisense oligonucleotides to human serine/threonine protein phosphatase genes
US7166432B2 (en) * 1999-03-12 2007-01-23 Integragen Compositions and methods for genetic analysis
US20050233340A1 (en) 2004-04-20 2005-10-20 Barrett Michael T Methods and compositions for assessing CpG methylation
US20090318305A1 (en) 2008-06-18 2009-12-24 Xi Erick Lin Methods for selectively capturing and amplifying exons or targeted genomic regions from biological samples
WO2012051327A2 (en) 2010-10-12 2012-04-19 Cornell University Method of dual-adapter recombination for efficient concatenation of multiple dna fragments in shuffled or specified arrangements
CA2821299C (en) 2010-11-05 2019-02-12 Frank J. Steemers Linking sequence reads using paired code tags
GB2496016B (en) 2011-09-09 2016-03-16 Univ Leland Stanford Junior Methods for obtaining a sequence
US9528107B2 (en) * 2012-01-31 2016-12-27 Pacific Biosciences Of California, Inc. Compositions and methods for selection of nucleic acids
US9637739B2 (en) * 2012-03-20 2017-05-02 Vilnius University RNA-directed DNA cleavage by the Cas9-crRNA complex
WO2013141680A1 (en) 2012-03-20 2013-09-26 Vilnius University RNA-DIRECTED DNA CLEAVAGE BY THE Cas9-crRNA COMPLEX
EP3241902B1 (en) 2012-05-25 2018-02-28 The Regents of The University of California Methods and compositions for rna-directed target dna modification and for rna-directed modulation of transcription
WO2013191775A2 (en) 2012-06-18 2013-12-27 Nugen Technologies, Inc. Compositions and methods for negative selection of non-desired nucleic acid sequences
US10847248B2 (en) 2012-08-10 2020-11-24 The Board Of Trustees Of The Leland Stanford Junior University Techniques for determining haplotype by population genotype and sequence data
EP3252174B1 (en) * 2012-10-15 2020-07-01 Life Technologies Corporation Compositions, methods, systems and kits for target nucleic acid enrichment
WO2014093718A1 (en) 2012-12-12 2014-06-19 The Broad Institute, Inc. Methods, systems, and apparatus for identifying target sequences for cas enzymes or crispr-cas systems for target sequences and conveying results thereof
MX374090B (es) 2013-03-14 2025-03-05 Caribou Biosciences Inc Composiciones y métodos de ácidos nucleicos dirigidos al ácido nucleico.
WO2014182574A1 (en) 2013-05-04 2014-11-13 The Board Of Trustees Of The Leland Stanford Junior University Enrichment of dna sequencing libraries from samples containing small amounts of target dna
EP4321628B1 (en) 2013-05-23 2025-09-03 The Board of Trustees of the Leland Stanford Junior University Transposition into native chromatin for personal epigenomics
US11414695B2 (en) * 2013-05-29 2022-08-16 Agilent Technologies, Inc. Nucleic acid enrichment using Cas9
US10421957B2 (en) 2013-07-29 2019-09-24 Agilent Technologies, Inc. DNA assembly using an RNA-programmable nickase
US9340799B2 (en) 2013-09-06 2016-05-17 President And Fellows Of Harvard College MRNA-sensing switchable gRNAs
JP7451070B2 (ja) 2013-11-07 2024-03-18 ザ ボード オブ トラスティーズ オブ ザ レランド スタンフォード ジュニア ユニバーシティー ヒトミクロビオームおよびその成分の分析のための無細胞核酸
AU2014346559B2 (en) 2013-11-07 2020-07-09 Editas Medicine,Inc. CRISPR-related methods and compositions with governing gRNAs
WO2015075056A1 (en) 2013-11-19 2015-05-28 Thermo Fisher Scientific Baltics Uab Programmable enzymes for isolation of specific dna fragments
WO2015116686A1 (en) 2014-01-29 2015-08-06 Agilent Technologies, Inc. Cas9-based isothermal method of detection of specific dna sequence
PL3102722T3 (pl) * 2014-02-04 2021-03-08 Jumpcode Genomics, Inc. Frakcjonowanie genomu
WO2015122967A1 (en) 2014-02-13 2015-08-20 Clontech Laboratories, Inc. Methods of depleting a target molecule from an initial collection of nucleic acids, and compositions and kits for practicing the same
US9670485B2 (en) 2014-02-15 2017-06-06 The Board Of Trustees Of The Leland Stanford Junior University Partitioning of DNA sequencing libraries into host and microbial components
US10208338B2 (en) 2014-03-03 2019-02-19 Swift Biosciences, Inc. Enhanced adaptor ligation
CN106687601A (zh) 2014-05-28 2017-05-17 株式会社图尔金 使用靶特异性核酸酶灵敏检测靶dna的方法
US20160053304A1 (en) 2014-07-18 2016-02-25 Whitehead Institute For Biomedical Research Methods Of Depleting Target Sequences Using CRISPR
AU2015294354B2 (en) 2014-07-21 2021-10-28 Illumina, Inc. Polynucleotide enrichment using CRISPR-Cas systems
US10435685B2 (en) * 2014-08-19 2019-10-08 Pacific Biosciences Of California, Inc. Compositions and methods for enrichment of nucleic acids
EP3183358B1 (en) 2014-08-19 2020-10-07 President and Fellows of Harvard College Rna-guided systems for probing and mapping of nucleic acids
CA2971444A1 (en) 2014-12-20 2016-06-23 Arc Bio, Llc Compositions and methods for targeted depletion, enrichment, and partitioning of nucleic acids using crispr/cas system proteins
CN107922971A (zh) 2015-05-18 2018-04-17 凯锐思公司 用于富集核酸群体的组合物和方法
WO2016196805A1 (en) 2015-06-05 2016-12-08 The Regents Of The University Of California Methods and compositions for generating crispr/cas guide rnas
AU2016308283B2 (en) 2015-08-19 2022-04-21 Arc Bio, Llc Capture of nucleic acids using a nucleic acid-guided nuclease-based system
EP3360067B1 (en) 2015-10-07 2025-10-01 The Board of Trustees of the Leland Stanford Junior University Techniques for determining whether an individual is included in ensemble genomic data
US20190083656A1 (en) 2015-10-16 2019-03-21 Temple University - Of The Commonwealth System Of Higher Education Methods and compositions utilizing cpf1 for rna-guided gene editing
CA3185611A1 (en) 2016-03-25 2017-09-28 Karius, Inc. Synthetic nucleic acid spike-ins
US11046995B2 (en) 2016-08-16 2021-06-29 The Regents Of The University Of California Method for finding low abundance sequences by hybridization (FLASH)
US20180051320A1 (en) 2016-08-22 2018-02-22 The Regents Of The University Of California Depletion of abundant sequences by hybridization (dash)
JP7068287B2 (ja) 2016-10-13 2022-05-16 ビオメリュー メタゲノム試料中の病原体の同定と抗生物質の特徴づけ

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