DK3699289T3 - Prøveklargøring til nukleinsyreamplifikation - Google Patents

Prøveklargøring til nukleinsyreamplifikation Download PDF

Info

Publication number
DK3699289T3
DK3699289T3 DK20165344.1T DK20165344T DK3699289T3 DK 3699289 T3 DK3699289 T3 DK 3699289T3 DK 20165344 T DK20165344 T DK 20165344T DK 3699289 T3 DK3699289 T3 DK 3699289T3
Authority
DK
Denmark
Prior art keywords
nucleic acid
sample preparation
acid amplification
amplification
sample
Prior art date
Application number
DK20165344.1T
Other languages
English (en)
Inventor
Louise Fraser
Paula Kokko-Gonzales
Andrew Slatter
Original Assignee
Illumina Cambridge Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GB201410196A external-priority patent/GB201410196D0/en
Priority claimed from GB201412207A external-priority patent/GB201412207D0/en
Application filed by Illumina Cambridge Ltd filed Critical Illumina Cambridge Ltd
Application granted granted Critical
Publication of DK3699289T3 publication Critical patent/DK3699289T3/da

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00Preparation of compounds containing saccharide radicals
    • C12P19/26Preparation of nitrogen-containing carbohydrates
    • C12P19/28N-glycosides
    • C12P19/30Nucleotides
    • C12P19/34Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6846Common amplification features

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Biomedical Technology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Plant Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
DK20165344.1T 2014-06-09 2015-06-09 Prøveklargøring til nukleinsyreamplifikation DK3699289T3 (da)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GB201410196A GB201410196D0 (en) 2014-06-09 2014-06-09 Sample preparation for nucleic acid amplification
GB201412207A GB201412207D0 (en) 2014-07-09 2014-07-09 Sample preparation for nucleic acid amplification
EP15731093.9A EP3152316B1 (en) 2014-06-09 2015-06-09 Sample preparation for nucleic acid amplification

Publications (1)

Publication Number Publication Date
DK3699289T3 true DK3699289T3 (da) 2022-06-13

Family

ID=53484085

Family Applications (2)

Application Number Title Priority Date Filing Date
DK15731093.9T DK3152316T3 (da) 2014-06-09 2015-06-09 Prøveklargøring til nukleinsyreamplifikation
DK20165344.1T DK3699289T3 (da) 2014-06-09 2015-06-09 Prøveklargøring til nukleinsyreamplifikation

Family Applications Before (1)

Application Number Title Priority Date Filing Date
DK15731093.9T DK3152316T3 (da) 2014-06-09 2015-06-09 Prøveklargøring til nukleinsyreamplifikation

Country Status (9)

Country Link
US (5) US20150353989A1 (da)
EP (3) EP4039815A1 (da)
CN (2) CN113025687A (da)
AU (1) AU2015273272B2 (da)
CA (1) CA2951495C (da)
DK (2) DK3152316T3 (da)
ES (2) ES2788948T3 (da)
SG (2) SG11201610315YA (da)
WO (1) WO2015189588A1 (da)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20150353989A1 (en) 2014-06-09 2015-12-10 Illumina Cambridge Limited Sample preparation for nucleic acid amplification
US10017759B2 (en) * 2014-06-26 2018-07-10 Illumina, Inc. Library preparation of tagged nucleic acid
US10900065B2 (en) 2014-11-14 2021-01-26 University Of Washington Methods and kits for labeling cellular molecules
US11408890B2 (en) 2015-04-14 2022-08-09 Massachusetts Institute Of Technology Iterative expansion microscopy
CN107922966B (zh) * 2015-07-06 2022-06-28 伊卢米纳剑桥有限公司 用于核酸扩增的样品制备
WO2018157048A1 (en) 2017-02-24 2018-08-30 Massachusetts Institute Of Technology Methods for examining podocyte foot processes in human renal samples using conventional optical microscopy
WO2018157074A1 (en) 2017-02-24 2018-08-30 Massachusetts Institute Of Technology Methods for diagnosing neoplastic lesions
WO2019023214A1 (en) * 2017-07-25 2019-01-31 Massachusetts Institute Of Technology ATAC IN SITU SEQUENCING
US10221444B1 (en) * 2017-11-05 2019-03-05 URIT Medical Electronic Co., Ltd. Methods and systems for production of DNA libraries directly from FFPE tissue
IL276343B2 (en) 2018-01-29 2024-10-01 St Jude Childrens Res Hospital Inc Method for nucleic acid amplification
US11873374B2 (en) 2018-02-06 2024-01-16 Massachusetts Institute Of Technology Swellable and structurally homogenous hydrogels and methods of use thereof
WO2020013833A1 (en) 2018-07-13 2020-01-16 Massachusetts Institute Of Technology Dimethylacrylamide (dmaa) hydrogel for expansion microscopy (exm)
US12228480B2 (en) * 2018-11-30 2025-02-18 Revvity Health Sciences, Inc. Biological sample preparation using electric fields
DE102018222357A1 (de) * 2018-12-19 2020-06-25 Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. In-vitro-Verfahren zum Nachweis von mindestens einer Nukleinsäure, die sich bei einem Lebewesen im Vollblut außerhalb der Blutzellen befindet und Vorrichtung und Kit hierzu
WO2020172247A1 (en) 2019-02-22 2020-08-27 Massachusetts Institute Of Technology Iterative direct expansion microscopy
CN110511978A (zh) * 2019-09-09 2019-11-29 北京优迅医学检验实验室有限公司 Ffpe样本dna文库及其构建方法
US12265004B2 (en) 2019-11-05 2025-04-01 Massachusetts Institute Of Technology Membrane probes for expansion microscopy
WO2021113505A1 (en) 2019-12-05 2021-06-10 Massachusetts Institute Of Technology Method for preparing a specimen for expansion microscopy
CN114107284B (zh) * 2021-12-03 2023-09-05 辽宁康惠生物科技有限公司 一种石蜡切片宏基因组提取试剂盒及提取方法

Family Cites Families (67)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU622426B2 (en) 1987-12-11 1992-04-09 Abbott Laboratories Assay using template-dependent nucleic acid probe reorganization
CA1341584C (en) 1988-04-06 2008-11-18 Bruce Wallace Method of amplifying and detecting nucleic acid sequences
AU3539089A (en) 1988-04-08 1989-11-03 Salk Institute For Biological Studies, The Ligase-based amplification method
US5130238A (en) 1988-06-24 1992-07-14 Cangene Corporation Enhanced nucleic acid amplification process
ATE144556T1 (de) 1988-06-24 1996-11-15 Amgen Inc Verfahren und mittel zum nachweis von nukleinsäuresequenzen
WO1990001069A1 (en) 1988-07-20 1990-02-08 Segev Diagnostics, Inc. Process for amplifying and detecting nucleic acid sequences
US5185243A (en) 1988-08-25 1993-02-09 Syntex (U.S.A.) Inc. Method for detection of specific nucleic acid sequences
EP0450060A1 (en) 1989-10-26 1991-10-09 Sri International Dna sequencing
DE69118930T2 (de) 1990-01-26 1997-01-09 Abbott Lab Verbessertes Verfahren zur Amplifikation von Nuklein säurezielsequenz, einsetzbar für die Polymerase und Ligasekettenreaktion
US5573907A (en) 1990-01-26 1996-11-12 Abbott Laboratories Detecting and amplifying target nucleic acids using exonucleolytic activity
US5455166A (en) 1991-01-31 1995-10-03 Becton, Dickinson And Company Strand displacement amplification
DE69531542T2 (de) 1994-02-07 2004-06-24 Beckman Coulter, Inc., Fullerton Ligase/polymerase-vermittelte analyse genetischer elemente von einzelnukleotid-polymorphismen und ihre verwendung in der genetischen analyse
US5677170A (en) 1994-03-02 1997-10-14 The Johns Hopkins University In vitro transposition of artificial transposons
JPH09510351A (ja) 1994-03-16 1997-10-21 ジェン−プローブ・インコーポレイテッド 等温鎖置換核酸増幅法
US5846719A (en) 1994-10-13 1998-12-08 Lynx Therapeutics, Inc. Oligonucleotide tags for sorting and identification
US5750341A (en) 1995-04-17 1998-05-12 Lynx Therapeutics, Inc. DNA sequencing by parallel oligonucleotide extensions
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
WO1998035057A1 (en) * 1997-02-06 1998-08-13 The National University Of Singapore Diagnosis of plasmodium infection by analysis of extrachromosomal genetic material
EP1591541B1 (en) 1997-04-01 2012-02-15 Illumina Cambridge Limited Method of nucleic acid sequencing
US6969488B2 (en) 1998-05-22 2005-11-29 Solexa, Inc. System and apparatus for sequential processing of analytes
AR021833A1 (es) 1998-09-30 2002-08-07 Applied Research Systems Metodos de amplificacion y secuenciacion de acido nucleico
US6274320B1 (en) 1999-09-16 2001-08-14 Curagen Corporation Method of sequencing a nucleic acid
US7582420B2 (en) 2001-07-12 2009-09-01 Illumina, Inc. Multiplex nucleic acid reactions
US7955794B2 (en) 2000-09-21 2011-06-07 Illumina, Inc. Multiplex nucleic acid reactions
US7611869B2 (en) 2000-02-07 2009-11-03 Illumina, Inc. Multiplexed methylation detection methods
US7001792B2 (en) 2000-04-24 2006-02-21 Eagle Research & Development, Llc Ultra-fast nucleic acid sequencing device and a method for making and using the same
ATE377093T1 (de) 2000-07-07 2007-11-15 Visigen Biotechnologies Inc Sequenzbestimmung in echtzeit
US7211414B2 (en) 2000-12-01 2007-05-01 Visigen Biotechnologies, Inc. Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
EP2607369B1 (en) 2002-08-23 2015-09-23 Illumina Cambridge Limited Modified nucleotides for polynucleotide sequencing
EP1636337A4 (en) 2003-06-20 2007-07-04 Illumina Inc METHODS AND COMPOSITIONS USEFUL FOR THE AMPLIFICATION AND GENOTYPING OF THE GENOME
GB0321306D0 (en) 2003-09-11 2003-10-15 Solexa Ltd Modified polymerases for improved incorporation of nucleotide analogues
US20110059865A1 (en) 2004-01-07 2011-03-10 Mark Edward Brennan Smith Modified Molecular Arrays
US20080108515A1 (en) * 2004-02-10 2008-05-08 Gormley Niall A Arrayed polynucleotides
US20060062531A1 (en) 2004-09-17 2006-03-23 Stephen Turner Fabrication of optical confinements
EP1828412B2 (en) 2004-12-13 2019-01-09 Illumina Cambridge Limited Improved method of nucleotide detection
US8623628B2 (en) 2005-05-10 2014-01-07 Illumina, Inc. Polymerases
GB0514936D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Preparation of templates for nucleic acid sequencing
US7405281B2 (en) 2005-09-29 2008-07-29 Pacific Biosciences Of California, Inc. Fluorescent nucleotide analogs and uses therefor
WO2007123744A2 (en) 2006-03-31 2007-11-01 Solexa, Inc. Systems and devices for sequence by synthesis analysis
US8343746B2 (en) 2006-10-23 2013-01-01 Pacific Biosciences Of California, Inc. Polymerase enzymes and reagents for enhanced nucleic acid sequencing
US8349167B2 (en) 2006-12-14 2013-01-08 Life Technologies Corporation Methods and apparatus for detecting molecular interactions using FET arrays
US8262900B2 (en) 2006-12-14 2012-09-11 Life Technologies Corporation Methods and apparatus for measuring analytes using large scale FET arrays
EP2639578B1 (en) 2006-12-14 2016-09-14 Life Technologies Corporation Apparatus for measuring analytes using large scale fet arrays
WO2009016652A1 (en) 2007-07-31 2009-02-05 Bigtec Private Limited A buffer system and a method for direct pcr amplification
US20090042290A1 (en) * 2007-08-06 2009-02-12 Christopher Steele Method of modifying a macromolecule without prior extraction from a sample
WO2010038042A1 (en) 2008-10-02 2010-04-08 Illumina Cambridge Ltd. Nucleic acid sample enrichment for sequencing applications
US20100137143A1 (en) 2008-10-22 2010-06-03 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes
ES2595055T3 (es) 2009-08-25 2016-12-27 Illumina, Inc. Métodos para seleccionar y amplificar polinucleótidos
US8771951B2 (en) 2009-11-16 2014-07-08 Genomics Usa, Inc. Methods for PCR and HLA typing using raw blood
EP2539449B9 (en) * 2010-02-26 2018-09-05 Qiagen GmbH Process for parallel isolation and/or purification of rna and dna
JP2011188856A (ja) * 2010-03-11 2011-09-29 Samsung Techwin Co Ltd リアルタイムpcrのための核酸テンプレートの製造
EP2388312A1 (en) * 2010-05-17 2011-11-23 Curetis AG Universally applicable lysis buffer and processing methods for the lysis of bodily samples
CN102344919A (zh) * 2010-08-04 2012-02-08 中国农业大学 一种无需提取动物组织dna的直接pcr方法
EP2614161B1 (en) 2010-09-09 2020-11-04 Fabric Genomics, Inc. Variant annotation, analysis and selection tool
US8951781B2 (en) 2011-01-10 2015-02-10 Illumina, Inc. Systems, methods, and apparatuses to image a sample for biological or chemical analysis
EP3623481B1 (en) 2011-09-23 2021-08-25 Illumina, Inc. Compositions for nucleic acid sequencing
NO2694769T3 (da) * 2012-03-06 2018-03-03
CA3138752C (en) 2012-04-03 2024-02-06 Illumina, Inc. Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing
US9644199B2 (en) * 2012-10-01 2017-05-09 Agilent Technologies, Inc. Immobilized transposase complexes for DNA fragmentation and tagging
EP3572527B1 (en) * 2013-10-17 2021-05-26 Illumina, Inc. Methods and compositions for preparing nucleic acid libraries
CA2949952C (en) * 2014-05-23 2021-03-23 Fluidigm Corporation Haploidome determination by digitized transposons
US20150353989A1 (en) 2014-06-09 2015-12-10 Illumina Cambridge Limited Sample preparation for nucleic acid amplification
US10017759B2 (en) * 2014-06-26 2018-07-10 Illumina, Inc. Library preparation of tagged nucleic acid
US11406980B2 (en) * 2015-02-25 2022-08-09 The Broad Institute, Inc. Reaction circuit design in microfluidic circuits
CN107922966B (zh) 2015-07-06 2022-06-28 伊卢米纳剑桥有限公司 用于核酸扩增的样品制备

Also Published As

Publication number Publication date
US10774367B2 (en) 2020-09-15
SG10202007321RA (en) 2020-09-29
CN106574287A (zh) 2017-04-19
ES2920524T3 (es) 2022-08-05
US11142786B2 (en) 2021-10-12
ES2788948T3 (es) 2020-10-23
WO2015189588A1 (en) 2015-12-17
CN113025687A (zh) 2021-06-25
US20200392563A1 (en) 2020-12-17
US20250146049A1 (en) 2025-05-08
EP3152316A1 (en) 2017-04-12
CA2951495C (en) 2024-06-04
US20220002783A1 (en) 2022-01-06
AU2015273272B2 (en) 2019-05-30
SG11201610315YA (en) 2017-01-27
CN106574287B (zh) 2021-03-23
EP4039815A1 (en) 2022-08-10
AU2015273272A1 (en) 2017-01-05
EP3699289A1 (en) 2020-08-26
EP3152316B1 (en) 2020-04-08
CA2951495A1 (en) 2015-12-17
DK3152316T3 (da) 2020-06-15
EP3699289B1 (en) 2022-04-13
US20190078139A1 (en) 2019-03-14
US20150353989A1 (en) 2015-12-10
US12188078B2 (en) 2025-01-07

Similar Documents

Publication Publication Date Title
DK3152316T3 (da) Prøveklargøring til nukleinsyreamplifikation
DK3129487T3 (da) Forbedrede nukleinsyrekonstruktioner til eukaryot genekspression
LT3334841T (lt) Nukleorūgščių tyrimo būdai
PL3118311T3 (pl) Antysensowny kwas nukleinowy
DK4023249T3 (da) Nukleinsyrevacciner
IL252556A0 (en) Nucleic acid constructs for genome editing
IL254000B (en) Nucleic acid sequence assembly
DK3134553T3 (da) Kolorimetrisk detektering af nukleinsyreamplifikation
EP3169793A4 (en) Isothermal methods for amplifying nucleic acid samples
DK3384274T3 (da) Fremgangsmåder til prøvekarakterisering
IL253464B (en) Universal killer t-cell
DK3222717T3 (da) Fremgangsmåde til at amplificere cirkulært dna
GB2548733B (en) Nucleic acid analysis device
DK3094731T3 (da) Saccharidmodificerede nukleinsyremolekyler
DK3125898T3 (da) Farmakofor til trail-induktion
GB201403216D0 (en) Nucleic acid sample preparation
DK3320111T3 (da) Prøveklargøring til nukleinsyreamplifikation
PT3234188T (pt) Amplificação de ácidos nucleicos em base exponencial superior a 2
EP3178919A4 (en) Nucleic acid amplification device
EP3158088A4 (en) Nucleic acid sample preparation
GB201413318D0 (en) Nucleic acid sample preparation
EP3202901A4 (en) Method for nucleic acid amplification
GB201418621D0 (en) Improved nucleic acid sample preparation using concatenation
GB201805223D0 (en) Nucleic acid amplification
EP3199615A4 (en) Nucleic acid analysis device