EP1003770A1 - Sekretierte polypeptide sowie diese kodierende polynukleotide - Google Patents
Sekretierte polypeptide sowie diese kodierende polynukleotideInfo
- Publication number
- EP1003770A1 EP1003770A1 EP98930279A EP98930279A EP1003770A1 EP 1003770 A1 EP1003770 A1 EP 1003770A1 EP 98930279 A EP98930279 A EP 98930279A EP 98930279 A EP98930279 A EP 98930279A EP 1003770 A1 EP1003770 A1 EP 1003770A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- seq
- polynucleotide
- amino acid
- protein
- nucleotide
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
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Classifications
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- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
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Definitions
- NO:l from nucleotide 1 to nucleotide 850;
- the present invention provides a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:2 having biological activity, the fragment preferably comprising eight (more preferably twenty, most preferably thirty) consecutive amino acids of SEQ ID NO:2, or a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:2 having biological activity, the fragment comprising the amino acid sequence from amino acid 231 to amino acid 240 of SEQ ID NO:2.
- the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
- a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone dx290_l deposited under accession number ATCC 98468;
- the present invention provides a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:4 having biological activity, the fragment preferably comprising eight (more preferably twenty, most preferably thirty) consecutive amino acids of SEQ ID NO:4, or a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:4 having biological activity, the fragment comprising the amino acid sequence from amino acid 331 to amino acid 340 of SEQ ID NO:4.
- (k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above; (1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
- the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone ek390_4 deposited under accession number ATCC 98468.
- the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:6 from amino acid 6 to amino acid 92.
- polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and (m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
- the present invention provides a protein comprising a fragment of the amino acid sequence of SEQ ID NO:8 having biological activity, the fragment preferably comprising eight (more preferably twenty, most preferably thirty) consecutive amino acids of SEQ ID NO:8, or a protein comprising a fragment of the amino acid sequence of SEQ ID NO:8having biological activity, the fragment comprising the amino acid sequence from amino acid 195 to amino acid 204 of SEQ ID NO:8.
- polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fs40_3 deposited under accession number ATCC 98468.
- the present invention provides a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:12 having biological activity, the fragment preferably comprising eight (more preferably twenty, most preferably thirty) consecutive amino acids of SEQ ID NO:12, or a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:12 having biological activity, the fragment comprising the amino acid sequence from amino acid 266 to amino acid 275 of SEQ ID NO:12.
- SEQ ID NO: 14 having biological activity, the fragment comprising the amino acid sequence from amino acid 79 to amino acid 88 of SEQ ID NO:14.
- a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO: 18 having biological activity, the fragment comprising eight consecutive amino acids of SEQ ID NO: 18;
- a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
- polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
- polynucleotide comprises the nucleotide sequence of SEQ ID NO: 1
- the present invention provides a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:20 having biological activity, the fragment preferably comprising eight (more preferably twenty, most preferably thirty) consecutive amino acids of SEQ ID NO:20, or a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of
- SEQ ID NO:20 having biological activity, the fragment comprising the amino acid sequence from amino acid 370 to amino acid 379 of SEQ ID NO:20.
- the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
- a "secreted” protein is one which, when expressed in a suitable host cell, is transported across or through a membrane, including transport as a result of signal sequences in its amino acid sequence.
- "Secreted” proteins include without limitation proteins secreted wholly (e.g., soluble proteins) or partially (e.g. , receptors) from the cell in which they are expressed.
- “Secreted” proteins also include without limitation proteins which are transported across the membrane of the endoplasmic reticulum.
- dx290_l demonstrated at least some similarity with the sequence identified as AA064383 (ml47h02.rl Stratagene mouse testis (#937308) Mus musculus cDNA clone 515187 5'). Based upon sequence similarity, dx290_l proteins and each similar protein or peptide may share at least some activity.
- nucleotide sequence of ek390_4 as presently determined is reported in SEQ ID NO:5. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the ek390_4 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:6.
- Amino acids 25 to 37 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 38, or are a transmembrane domain.
- ek390_4 proteins and each similar protein or peptide may share at least some activity.
- the TopPredll computer program predicts a potential transmembrane domain within the ek390_4 protein sequence centered around amino acid 160 of SEQ ID NO:6.
- the nucleotide sequence of ek390_4 indicates that it may contain GGGA repeat sequences.
- ga63_6 A polynucleotide of the present invention has been identified as clone "ga63_6".
- ga63_6 was isolated from a human adult testes cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
- ga63_6 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "ga63_6 protein").
- the nucleotide sequence of ga63_6 as presently determined is reported in SEQ ID NO:ll. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the ga63_6 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:12. Amino acids 11 to 23 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 24, or are a transmembrane domain.
- the EcoRI/NotI restriction fragment obtainable from the deposit containing clone ga63_6 should be approximately 2300 bp.
- binding of sp32 to proacrosin may be involved in packaging the acrosin zymogen into the acrosomal matrix.
- ga63_6 proteins and each similar protein or peptide may share at least some activity.
- hy370_9 The nucleotide sequence disclosed herein for hy370_9 was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. hy370_9 demonstrated at least some similarity with the sequence identified as AA763313 (vv89h07.rl Stratagene mouse skin (#937313) Mus musculus cDNA clone 1229629 5'). Based upon sequence similarity, hy370_9 proteins and each similar protein or peptide may share at least some activity. The TopPredll computer program predicts an additional potential transmembrane domain within the hy370_9 protein sequence centered around amino acid 140 of SEQ ID NO:16.
- a polynucleotide of the present invention has been identified as clone "ie47_4".
- ie47_4 was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
- ie47_4 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "ie47_4 protein").
- the nucleotide sequence of ie47_4 as presently determined is reported in SEQ ID NO: 17.
- the EcoRI/NotI restriction fragment obtainable from the deposit containing clone ie47_4 should be approximately 2300 bp.
- proteins and protein fragments that contain a segment preferably comprising 8 or more (more preferably 20 or more, most preferably 30 or more) contiguous amino acids that shares at least 75% sequence identity (more preferably, at least 85% identity; most preferably at least 95% identity) with any such segment of any of the disclosed proteins.
- Species homologues of the disclosed polynucleotides and proteins are also provided by the present invention.
- a "species homologue" is a protein or polynucleotide with a different species of origin from that of a given protein or polynucleotide, but with significant sequence similarity to the given protein or polynucleotide.
- allelic variants of the disclosed polynucleotides or proteins that is, naturally-occurring alternative forms of the isolated polynucleotides which also encode proteins which are identical or have significantly similar sequences to those encoded by the disclosed polynucleotides.
- allelic variants have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% identity) with the given polynucleotide, where sequence identity is determined by comparing the nucleotide sequences of the polynucleotides when aligned so as to maximize overlap and identity while minimizing sequence gaps.
- Allelic variants may be isolated and identified by making suitable probes or primers from the sequences provided herein and screening a suitable nucleic acid source from individuals of the appropriate species.
- bacterial strains include Escherichia coli, Bacillus subtilis, Salmonella typhimurium, or any bacterial strain capable of expressing heterologous proteins. If the protein is made in yeast or bacteria, it may be necessary to modify the protein produced therein, for example by phosphorylation or glycosylation of the appropriate sites, in order to obtain the functional protein. Such covalent attachments may be accomplished using known chemical or enzymatic methods.
- the protein of the invention may also be expressed as a product of transgenic animals, e.g., as a component of the milk of transgenic cows, goats, pigs, or sheep which are characterized by somatic or germ cells containing a nucleotide sequence encoding the protein.
- the protein may also be produced by known conventional chemical synthesis.
- the proteins provided herein also include proteins characterized by amino acid sequences similar to those of purified proteins but into which modification are naturally provided or deliberately engineered.
- modifications in the peptide or DNA sequences can be made by those skilled in the art using known techniques.
- Modifications of interest in the protein sequences may include the alteration, substitution, replacement, insertion or deletion of a selected amino acid residue in the coding sequence.
- one or more of the cysteine residues may be deleted or replaced with another amino acid to alter the conformation of the molecule.
- Techniques for such alteration, substitution, replacement, insertion or deletion are well known to those skilled in the art (see, e.g., U.S. Patent No.4,518,584).
- such alteration, substitution, replacement, insertion or deletion retains the desired activity of the protein.
- the polynucleotides provided by the present invention can be used by the research community for various purposes.
- the polynucleotides can be used to express recombinant protein for analysis, characterization or therapeutic use; as markers for tissues in which the corresponding protein is preferentially expressed (either constitutively or at a particular stage of tissue differentiation or development or in disease states); as molecular weight markers on Southern gels; as chromosome markers or tags (when labeled) to identify chromosomes or to map related gene positions; to compare with endogenous DNA sequences in patients to identify potential genetic disorders; as probes to hybridize and thus discover novel, related DNA sequences; as a source of information to derive PCR primers for genetic fingerprinting; as a probe to "subtract-out" known sequences in the process of discovering other novel polynucleotides; for selecting and making oligomers for attachment to a "gene chip” or other support, including for examination of expression patterns; to raise anti-protein antibodies using DNA im
- Polynucleotides and proteins of the present invention can also be used as nutritional sources or supplements. Such uses include without limitation use as a protein or amino acid supplement, use as a carbon source, use as a nitrogen source and use as a source of carbohydrate.
- the protein or polynucleotide of the invention can be added to the feed of a particular organism or can be administered as a separate solid or liquid preparation, such as in the form of powder, pills, solutions, suspensions or capsules.
- the protein or polynucleotide of the invention can be added to the medium in or on which the microorganism is cultured.
- Assays for T-cell or thymocyte proliferation include without limitation those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H.
- a molecule which inhibits or blocks interaction of a B7 lymphocyte antigen with its natural ligand(s) on immune cells such as a soluble, monomeric form of a peptide having B7-2 activity alone or in conjunction with a monomeric form of a peptide having an activity of another B lymphocyte antigen
- Blocking B lymphocyte antigen function in this matter prevents cytokine synthesis by immune cells, such as T cells, and thus acts as an immunosuppressant. Moreover, the lack of costimulation may also be sufficient to anergize the T cells, thereby inducing tolerance in a subject. Induction of long-term tolerance by B lymphocyte antigen-blocking reagents may avoid the necessity of repeated administration of these blocking reagents. To achieve sufficient immunosuppression or tolerance in a subject, it may also be necessary to block the function of a combination of
- Blocking antigen function may also be therapeutically useful for treating autoimmune diseases.
- Many autoimmune disorders are the result of inappropriate activation of T cells that are reactive against self tissue and which promote the production of cytokines and autoantibodies involved in the pathology of the diseases. Preventing the activation of autoreactive T cells may reduce or eliminate disease symptoms.
- reagents which block costimulation of T cells by disrupting recepto ⁇ ligand interactions of B lymphocyte antigens can be used to inhibit T cell activation and prevent production of autoantibodies or T cell-derived cytokines which may be involved in the disease process. Additionally, blocking reagents may induce antigen-specific tolerance of autoreactive T cells which could lead to long-term relief from the disease.
- the efficacy of blocking reagents in preventing or alleviating autoimmune disorders can be determined using a number of well-characterized animal models of human autoimmune diseases.
- tumor cells which lack MHC class I or MHC class II molecules, or which fail to reexpress sufficient amounts of MHC class I or MHC class II molecules, can be transfected with nucleic acid encoding all or a portion of ⁇ e.g., a cytoplasmic-domain truncated portion) of an MHC class I chain protein and ⁇ 2 microglobulin protein or an MHC class II ⁇ chain protein and an MHC class II ⁇ chain protein to thereby express MHC class I or MHC class II proteins on the cell surface.
- Assays for stem cell survival and differentiation include, without limitation, those described in: Methylcellulose colony forming assays, Freshney, M.G. In Culture of Hematopoietic Cells. R.I. Freshney, et al. eds. Vol pp. 265-268, Wiley-Liss, Inc., New York, NY. 1994; Hirayama et al., Proc. Natl. Acad. Sci. USA 89:5907-5911, 1992; Primitive hematopoietic colony forming cells with high proliferative potential, McNiece, I.K. and Briddell, R.A.
- a protein of this invention may also be used in the treatment of periodontal disease, and in other tooth repair processes. Such agents may provide an environment to attract bone-forming cells, stimulate growth of bone-forming cells or induce differentiation of progenitors of bone-forming cells.
- a protein of the invention may also be useful in the treatment of osteoporosis or osteoarthritis, such as through stimulation of bone and /or cartilage repair or by blocking inflammation or processes of tissue destruction (collagenase activity, osteoclast activity, etc.) mediated by inflammatory processes.
- Assays for tissue generation activity include, without limitation, those described in: International Patent Publication No. WO95/ 16035 (bone, cartilage, tendon); International Patent Publication No. WO95/05846 (nerve, neuronal); International Patent Publication No. WO91/07491 (skin, endothelium ).
- proteins of the present invention with cadherin activity can be used to generate antibodies recognizing and binding to cadherins.
- Such antibodies can be used to block the adhesion of inappropriately expressed tumor-cell cadherins, preventing the cells from forming a tumor elsewhere.
- Such an anti-cadherin antibody can also be used as a marker for the grade, pathological type, and prognosis of a cancer, i.e. the more progressed the cancer, the less cadherin expression there will be, and this decrease in cadherin expression can be detected by the use of a cadherin-binding antibody.
- a protein of the present invention may be used in a pharmaceutical composition when combined with a pharmaceutically acceptable carrier.
- a pharmaceutically acceptable carrier may also contain (in addition to protein and a carrier) diluents, fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art.
- pharmaceutically acceptable means a non-toxic material that does not interfere with the effectiveness of the biological activity of the active ingredient(s). The characteristics of the carrier will depend on the route of administration.
- a preferred pharmaceutical composition for intravenous, cutaneous, or subcutaneous injection should contain, in addition to protein of the present invention, an isotonic vehicle such as Sodium Chloride Injection, Ringer's Injection, Dextrose Injection, Dextrose and Sodium Chloride Injection, Lactated Ringer's Injection, or other vehicle as known in the art.
- the pharmaceutical composition of the present invention may also contain stabilizers, preservatives, buffers, antioxidants, or other additives known to those of skill in the art.
- the amount of protein of the present invention in the pharmaceutical composition of the present invention will depend upon the nature and severity of the condition being treated, and on the nature of prior treatments which the patient has undergone.
- the amount of sequestering agent useful herein is 0.5-20 wt%, preferably 1-10 wt% based on total formulation weight, which represents the amount necessary to prevent desorbtion of the protein from the polymer matrix and to provide appropriate handling of the composition, yet not so much that the progenitor cells are prevented from infiltrating the matrix, thereby providing the protein the opportunity to assist the osteogenic activity of the progenitor cells.
- proteins of the invention may be combined with other agents beneficial to the treatment of the bone and /or cartilage defect, wound, or tissue in question.
- CTCTCTGGAT TCAATCAAGG CTGATGGGAC CTCTCTGGAC TTCAGCACTT ACCGCAGTAG 180
- AGTCTTCACT CACCAAGGAA AAGTGGCTCT GTATGGCAAG CTGGTGCAGT CAGCTCAGAA 660 TGAGAGGGAG AAACTTCAAA TAAAGATAGA TGAGATGGAT AAAATACTTA AGAAGATCGA 720
- CTCTAGCTCC GCAGCATTTG CAAAGTTTGA AATAACTTTG TTTCTCTCAG CCTATTATCC 1440 ATCTGTACCA TTACCTTCCA CCATTCAGAA TCACGTTGGG AACACTAGCC AAGATGATAT 1500
- Lys lie Lys Ser Cys Phe Thr Lys Met Thr Lys Val Phe Thr His Gin 130 135 140
- Cys Lys Gly lie Leu Gin Lys Ala Glu Thr Leu Tyr Thr Met Gly Asp 85 90 95
- Gin Gin Lys Pro lie Tyr Ala Arg Glu Arg Asp Arg Lys Leu Met Gin 245 250 255
- AACCGCCGCC AGCACCATGG CCAGCACCAT TTCCGCCTAC AAGGAGAAGA TGAAGGAGCT 120 GTCGGTGCTG TCGCTCATCT GCTCCTGCTT CTACACACAG CCGCACCCCA ATACCGTCTA 180 CCAGTACGGG GACATGGAGG TGAAGCAGCT GGACAAGCGG GCCTCAGGCC AGAGCTTCGA 240
- CTTCCAGAGC CACACCCAGG GACCACGGGA GGATCCTGAC CCCTGCAGGG CTCAGGGGTC 1980
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Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US98588 | 1979-11-29 | ||
| US878715 | 1992-04-30 | ||
| US87871597A | 1997-06-19 | 1997-06-19 | |
| US9858898A | 1998-06-17 | 1998-06-17 | |
| PCT/US1998/012516 WO1998057976A1 (en) | 1997-06-19 | 1998-06-18 | Secreted proteins and polynucleotides encoding them |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| EP1003770A1 true EP1003770A1 (de) | 2000-05-31 |
| EP1003770A4 EP1003770A4 (de) | 2002-10-30 |
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| EP98930279A Withdrawn EP1003770A4 (de) | 1997-06-19 | 1998-06-18 | Sekretierte polypeptide sowie diese kodierende polynukleotide |
Country Status (5)
| Country | Link |
|---|---|
| EP (1) | EP1003770A4 (de) |
| JP (1) | JP2002513294A (de) |
| AU (1) | AU7970498A (de) |
| CA (1) | CA2294569A1 (de) |
| WO (1) | WO1998057976A1 (de) |
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| WO2001040271A2 (en) * | 1999-12-01 | 2001-06-07 | Ludwig Institute For Cancer Research | Cancer associated antigens and uses therefor |
| JP5504562B2 (ja) * | 2006-12-20 | 2014-05-28 | 東レ株式会社 | 癌の検出方法 |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4798885A (en) * | 1986-02-07 | 1989-01-17 | Genentech, Inc. | Compositions of hormonally active human and porcine inhibin containing an α chain and 62 chain |
| US5770209A (en) * | 1991-08-30 | 1998-06-23 | University Of South Florida | Acceleration of wound healing using connective tissue growth factor |
| US5536637A (en) * | 1993-04-07 | 1996-07-16 | Genetics Institute, Inc. | Method of screening for cDNA encoding novel secreted mammalian proteins in yeast |
| KR960703433A (ko) * | 1993-06-29 | 1996-08-17 | 로버트 피. 블랙버언 | 증가된 생물학적 활성을 갖는 끝이 잘린 케라틴세포성장인자(kgf) (a truncated keratinocyte growth factor(kgf) having increased biological activity) |
| US5707829A (en) * | 1995-08-11 | 1998-01-13 | Genetics Institute, Inc. | DNA sequences and secreted proteins encoded thereby |
| US5708157A (en) * | 1996-07-26 | 1998-01-13 | Genetics Institute, Inc. | Secreted proteins and polynucleotides encoding them |
| US5792628A (en) * | 1997-03-14 | 1998-08-11 | Bowman; Michael | Secreted protein, BA3.1, and polynucleotides encoding same |
-
1998
- 1998-06-18 WO PCT/US1998/012516 patent/WO1998057976A1/en not_active Ceased
- 1998-06-18 JP JP50468199A patent/JP2002513294A/ja active Pending
- 1998-06-18 CA CA002294569A patent/CA2294569A1/en not_active Abandoned
- 1998-06-18 AU AU79704/98A patent/AU7970498A/en not_active Abandoned
- 1998-06-18 EP EP98930279A patent/EP1003770A4/de not_active Withdrawn
Non-Patent Citations (5)
| Title |
|---|
| DATABASE EMBL [Online] 30 June 1993 (1993-06-30) Database accession no. L20259 XP002209843 * |
| DATABASE EMBL [Online] Database accession no. AB007912 XP002209845 * |
| DATABASE EMBL [Online] Database accession no. L14938 XP002209844 * |
| OKAZAKI TAKASHI ET AL: "Molecular diversity of the SCG10/stathmin gene family in the mouse." GENOMICS, vol. 18, no. 2, 1993, pages 360-373, XP002209842 ISSN: 0888-7543 * |
| See also references of WO9857976A1 * |
Also Published As
| Publication number | Publication date |
|---|---|
| EP1003770A4 (de) | 2002-10-30 |
| WO1998057976A1 (en) | 1998-12-23 |
| JP2002513294A (ja) | 2002-05-08 |
| CA2294569A1 (en) | 1998-12-23 |
| AU7970498A (en) | 1999-01-04 |
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