EP1146888A2 - Interventions therapeutiques specifiques obtenues par interference avec redistribution et ou ciblage - Google Patents

Interventions therapeutiques specifiques obtenues par interference avec redistribution et ou ciblage

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EP1146888A2
EP1146888A2 EP99948735A EP99948735A EP1146888A2 EP 1146888 A2 EP1146888 A2 EP 1146888A2 EP 99948735 A EP99948735 A EP 99948735A EP 99948735 A EP99948735 A EP 99948735A EP 1146888 A2 EP1146888 A2 EP 1146888A2
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use according
cells
kappab
cell
pde
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Per O. G. Arkhammar
Bernard Robert Terry
Kurt Marshall Scudder
Sara Petersen Bjorn
Ole Thastrup
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BioImage AS
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BioImage AS
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    • G01N2333/91—Transferases (2.)
    • G01N2333/912—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • G01N2333/91205—Phosphotransferases in general
    • G01N2333/9121—Phosphotransferases in general with an alcohol group as acceptor (2.7.1), e.g. general tyrosine, serine or threonine kinases
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Definitions

  • This application describes a novel mechanism of action of chemical entities in order to prevent or treat adverse conditions which may be reduced or abolished by modulating the effectiveness of l-kappaB kinase (IKK) or cyclic nucleotide phosphodiesterases (PDE:s) by modulation of their targeting or localisation in the cell.
  • IKK l-kappaB kinase
  • PDE cyclic nucleotide phosphodiesterases
  • the present application relates to a novel method for preventing or treating, in an animal in need thereof, an adverse condition which may be reduced or abolished by modulating the activity of one or more IKKs or PDE:s having the ability to cleave cAMP or cGMP.
  • the method comprises modulation of the specific effectiveness of IKKs or PDE:s by modulating their spatial distribution within cells of the animal.
  • the IKK is chosen from the group consisting of IKK ⁇ , IKK ⁇ , IKK ⁇ and NIK. In one embodiment IKK ⁇ is the preferred isoform.
  • the PDE:s are chosen from the group consisting of PDE1 , PDE2, PDE3, PDE4, PDE 5, PDE6, PDE7, PDE8, PDE9 and PDE10.
  • the method relates to PDE4 and isoforms thereof, such as PDE4D, and splice variants of PDE4D, such as PDE4D1 , PDE4D2, PDE4D3, PDE4D4 and PDE4D5.
  • the animal with the adverse condition may be a mammal and preferably a human.
  • modulation of the specific effectiveness of the PDE is a dislocation of the PDE from a native location within the cell.
  • modulation of the specific effectiveness of the PDE involves a disruption of its targeting to a native location within the cell.
  • modulation of the specific effectiveness of the PDE involves interference with the redistribution of the PDE, the redistribution being associated with an increase or a decrease of the specific effectiveness of the PDE.
  • the modulation of the specific effectiveness of the PDE may involve both an up- regulation or a down-regulation of the effectiveness of the PDE to perform its function within the cell.
  • the present invention provides compositions and methods for modifying the activation of NF-kappaB by mis-targeting and/or modulation of the redistribution of specific IKKs.
  • the mis-targeting has, as shown in example 1 , significant functional consequences that can be related to a diminished ability of cytokines and other stimuli to activate NFkappaB.
  • NFkappaB has been shown to rescue transformed cells from undergoing apoptosis when exposed to pro-inflammatory cytokines like TNF ⁇ (Baichwal, V.R. & Baeuerle, P.A. (1997) Curr Biol 7, R94-6).
  • cytokines like TNF ⁇
  • PS473 was able to influence TNF -induced apoptosis. As seen in example 1 the probe (PS473) was found to hypersensitise cells to apoptotic stimuli.
  • the present invention provides agents that modulate the targeting and/or redistribution of IKKs.
  • agents include polypeptides that comprise a putative leucine zipper region of IKK ⁇ . Included are DNA molecules and expression vectors that encode for the described peptides, furthermore host cells are provided that express said peptides in a stable or transient expression system.
  • the invention provides a method for finding compounds that modulate targeting and redistribution of IKK ⁇ and of derivatives thereof.
  • the method renders itself to screening for compounds that modulate the functional activity of I- kappaB kinase ⁇ through modulation of one or more of multiple targeting sites of IKK ⁇ (or other IKKs) and which thereby cause either a partial or a complete inhibition of the NF-kappaB activation.
  • the method will allow for identification of compounds that modulate said targeting or redistribution in specific cell types.
  • the presented novel mechanism of action will be useful in the treatment of the following diseases/conditions: chronic inflammation, asthma and chronic bronchial hyperreactivity of non-asthma etiology, rheumatoid arthritis and pelvospondylitis, ulcerative colitis and Crohn's disease, diabetes mellitus type I, systemic lupus erythematosus, myasthenia gravis, Hashimoto's thyreoiditis, Graves' disease and immune thrombocytopenic purpura, acute respiratory distress syndrome (ARDS) and septic shock as well as depression.
  • diseases/conditions chronic inflammation, asthma and chronic bronchial hyperreactivity of non-asthma etiology, rheumatoid arthritis and pelvospondylitis, ulcerative colitis and Crohn's disease, diabetes mellitus type I, systemic lupus erythematosus, myasthenia gravis, Hashimoto's
  • Cytokines are produced in cascades, the pro-inflammatory TNF and IL-1 ⁇ often responsible for initiating a process, which leads to a more general production of further cytokines.
  • This cascade of gene expression is largely under the control of NF-kappaB, a ubiquitous transcription factor that, by regulating the expression of multiple inflammatory and immune genes, plays a critical role in host defence and in chronic inflammatory diseases (Sen and Baltimore, 1986; Mukaida et al., 1990; Beg et al., 1993; Cogswell et al., 1993).
  • NF-kappaB is activated not only by cytokines, but also by reactive oxygen species (ROS), viruses, and a range of other generally noxious and pathogenic stimuli (Blackwell et al., 1997; Schulzwe-Osthoff et al., 1997). Activation of NF-kappaB via ROS has been implicated in neurodegenerative disorders such as Parkinson's and Alzheimer's (Lesoualc'h et al., 1998; O'Neill et al., 1997) and also in inflammatory bowel disease (Jourd'heuil et al., 1997).
  • ROS reactive oxygen species
  • NF-kappaB Tissue inflammatory reponse to x- rays is mediated directly by NF-kappaB (Hallahan et al., 1995). Activation of NF-kappaB has been implicated in the production of atherosclerotic lesions of smooth muscle cells (Bourcier et al., 1997) and in cardiac inflammatory disorders (Hattori et al., 1997).
  • NF- kappaB/Rel transcription factors are also known to play a role in the pathogenesis of certain tumours, especially those of haematopoetic origin (Neumann et al., 1997), and constitutive (autocrine) activation of NF-kappaB is known to promote a resistance to apoptotic stimuli (Giri et al., 1998).
  • Inhibitors of NF-kappaB should increase the cytotoxic efficacy of anticancer chemotherapies (Bours et al., 1998).
  • the inflammatory pathways are notoriously complex, yet the feasibility of reducing or eliminating inflammatory responses through modulation of NF-kappaB activity has already been demonstrated in a number of different cells (Makarov et al., 1997).
  • the key proteins involved in this control system divide into distinct groups: a) Those that bind DNA. These belong to the Rel family of transcription factors (Ghosh et al., 1990) and include p50, p65, p52/49, p75/Rel and RelB.
  • Bcl3 Nolan et al., 1993; Watanabe et al., 1997) and Cbp/p300 (Zhong et al., 1998.
  • Inactive p65/p50 NF-kappaB dimers are held in the cytoplasm coupled to inhibitory I- kappaB molecules ( and ⁇ isoforms) via the p65 subunits.
  • Activated l-kappaB kinases (IKK) phosphorylate the inhibitors, targeting them for ubiquitination and subsequent proteasomal digestion (Beg et al., 1993).
  • the released subunits translocate to the nucleus and there activate transcription.
  • the l-kappa kinases (IKK- ⁇ , IKK- ⁇ and IKK- ⁇ ) have been shown to be part of a large multi-component complex (Chen et al. 1996; Rothwarf et al., 1998).
  • IKK-complex-associated protein IKAP (Cohen et al. 1998). It is expected that a tight assembly of the complex is necessary for the IKKs to be activated by the NF-kappa- B-inducing kinase (NIK) and thereby induce phosphorylation of the l-kappaB subunits. Interestingly the affinity of IKK- ⁇ for IKAP diminishes upon phosphorylation of IKK- ⁇ by NIK.
  • Glucocorticoids are powerfully efficient modulators of inflammation, but suffer from the potential hazards of suppressing necessary protective responses to infection and decreasing some essential healing processes. They modulate cytokine expression by a combination of genomic mechanisms.
  • the activated GC-receptor complex can (i) bind to and inactivate AP-1 or NF-kappaB, (ii) upregulate l-kappaB production via GC response elements (iii) reduce the half-life of cytokine mRNAs (Brattsand & Linden 1996). But steroid treatment broadly attenuates all cytokine production from all lymphocytes, so not only do levels of the inflammatory cytokines fall, but also that of the anti-inflammatory IL- 10.
  • Th1 -type pathways Specific modulation of Th1 -type pathways would be an initial goal of this project. It is also known that some fibroblast cell NF-kappaB-mediated responses are likely governors of inflammatory progression, so inhibition of such responses could have detrimental effects (Smith et al., 1997). Therapies, which maintain appropriate feedback systems, but modulate inappropriate cytokine production represent an unmet medical need.
  • cAMP cyclic adenosine monophosphate
  • cGMP cyclic guanosine monophosphate
  • the processes mediated by cAMP and cGMP include control of smooth muscle tone, learning, vision, cellular differentiation, control of pro-inflammatory mediator production and action, apoptosis, lipogenesis, glycogenolysis and gluconeogenesis, circadian rhythms, cardiac function, and mood control through noradrenergic potentiation.
  • Cyclic nucleotides are generated by adenylate and guanylate cyclases (ACs and GCs, respectively) from ATP and GTP, signal to cAMP- and cGMP-dependent effector proteins such as protein kinases (cAKs and cGKs, respectively) and certain ion channels.
  • cAMP and cGMP are removed by phosphodiesterases (PDE:s).
  • PDE phosphodiesterases
  • cAMP/cGMP Inactivation of cAMP/cGMP occurs by hydrolysis of the 3'-ester bond, catalysed by the PDEs.
  • the PDE:s are key components of the cyclic nucleotide signalling systems, allowing local concentration differences of the cyclic nucleotide messengers to be established, between adjacent tissues, between adjacent cells, even within a single cell between different volumes of cytoplasm.
  • the ability to generate such heterogeneity in the distribution of concentrations of a commonly shared signalling molecule, such as cAMP, is at the heart of directed signalling processes.
  • cyclic nucleotide control has to be achieved with defined cellular selectivity (Perry and Higgs, 1998).
  • the catalytic domain lies towards the carboxylic acid terminus of each PDE protein and has the greatest homology between the PDE families, being >75% homologous at the amino acid level (Perry and Higgs, 1998). Nevertheless, each of the more than 30 PDE:s known have individually distinct substrate specificities, kinetic characteristics, regulatory properties and cellular and subcellular distributions (Houslay and Milligan, 1997).
  • PDE s 4, 7 and 8 are highly specific for cAMP.
  • PDE:s 5, 6, 9 and 10 are selective for cGMP.
  • PDE3s bind cAMP and cGMP with similar affinity, but hydrolyse cAMP most efficiently, cGMP rather poorly. PDE3s are therefore negatively regulated in their cAMP hydrolysing ability by cGMP.
  • PDE:s 1 and 2 hydrolyse both cAMP and cGMP, but with PDE1 the relative efficiencies vary with isoenzyme subtype (Perry and Higgs, 1998).
  • the amino terminal ends of PDE:s consist of the regulatory domains, which are very different both between families and between variants within families.
  • This region contains variously: a binding domain for Ca 2+ -calmodulin (CaM) in PDE1 ; non-catalytic cGMP- binding sites in PDE:s 2, 5 and 6; a binding domain for the signalling G-protein transducin in PDE6.
  • the amino terminal region also contains protein- and membrane- targeting sequences in several PDE3:s and PDE4:s, as well as protein kinase phosphorylation sites in PDE:s 1 , 3, 4 and 5. These phosphorylation sites are likely to be important in regulation of catalytic activity and/or subcellular location (Perry and Higgs, 5 1998).
  • PDE4 cAMP degrading phosphodiesterases
  • PDE4A, PDE4B, PDE4C, PDE4D share common C-terminal regions, different for each family, and catalytic domains that for all PDE4 isoforms are very similar (84% homology over about 360 amino acids across all PDE4:s; Houslay, Sullivan and Bolger, 1998). From N- terminus to catalytic region, the sequence in "long form" PDE4s can be divided into 5
  • PDE4 15 regions, three of which are isoform-specific (N-terminal region, linker regions 1 and 2, or LR1 and LR2) and two, more conserved regions, that are broadly similar between all isoforms, the upstream conserved regions 1 and 2 (UCR1 and UCR2).
  • PKA phosphorylation sites for a variety of kinases, including PKA (e.g. Ser 54 in human PDE4D3), mitogen activated protein kinases (e.g. Ser 487 of human PDE4B2), casein kinase II (e.g. Ser 489 of PDE4B2) and calcium-diacylglycerol dependent protein kinases (Houslay, Sullivan and Bolger, 1998). Phosphorylations at some of these sites have been shown to activate the PDEs (e.g. Ser 54), others serve to inhibit. There is also, PKA (e.g. Ser 54 in human PDE4D3), mitogen activated protein kinases (e.g. Ser 487 of human PDE4B2), casein kinase II (e.g. Ser 489 of PDE4B2) and calcium-diacylglycerol dependent protein kinases (Houslay, Sullivan and Bolger, 1998). Phosphorylations at some of these sites have been
  • PDE4:s (Wachtel, 1982, Nemoz et al., 1985) gave an important tool by which to determine the role of PDE4:s in different cell types. Originally developed as a neurotropic agent, rolipram indicated the therapeutic potential of PDE4 inhibition in control of depressive disorders. Analysis of the pharmacological properties of rolipram, and over 800 publications covering these properties have appeared over the period 1993 to 1998
  • PDE4 inhibition helps to increase cAMP in bronchial smooth muscle, thereby producing a modest bronchodilatory effect, of use in the alleviation of asthmatic symptoms.
  • inhibition of PDE4 s is now a recognised method by which to suppress immune and inflammatory cell responses (Hughes et al., 1997; Torphy, 1998; Teixeira etal., 1997).
  • PDE4 s play major roles in modulating the activity of virtually every cell type involved in the inflammatory process. Immune and inflammatory conditions occur when recruitment of leukocytes from the blood compartment into tissues is either uncontrolled, inappropriate, prolonged or directed against self.
  • ARDS acute respiratory distress syndrome
  • inflammation may play a part in defining the extent of injury resulting from reperfusion following ischaemia, at least in brain and lung (Entman and Smith, 1994).
  • Chronic inflammatory conditions such as asthma are currently treatable with steroids, but long term treatment brings unavoidable side-effects including immunosuppression, metabolic disturbance and hypertension (Teixeira et al., 1997).
  • NSAIDS non-steroidal anti-inflammatories
  • PDE4 s appear to play the dominant role in neutrophils, basophils, eosinophils and mast cells, PDE3s being dominant in monocytes/macrophages and lymphocytes.
  • Inhibitors of PDE3s and PDE4 s often interact synergistically in control of inflammatory response in asthma models (Teixeira et al., 1997).
  • Other PDE s may be important in inflammatory cells, but their involvement has yet to be clarified or demonstrated.
  • Increased cAMP modulates myosin light chain kinase (MLCK) activity causing relaxation, and this is the primary effect in bronchial smooth muscle.
  • Useful compounds will relax bronchial smooth muscle slowly and maintain relaxation for sustained periods, but also help reduce inflammatory immune responses to allergens.
  • PDE3 and PDE4 isozymes seems to relax bronchial smooth muscle most effectively (Raeburn & Advenier,1995) in humans, the possibility of cardiovascular complications is increased by the use of PDE3 inhibitors, and in fact PDE4 inhibitors such as rolipram, alone or in combination with agonists of the ⁇ 2 adrenoceptors such as salbutamol, are effective bronchorelaxants.
  • PDE4 inhibition may be to inhibit chemokine production, especially those that are chemoattractants of leukocytes (Teixeira et al., 1997).
  • Inhibitors of PDE4 are effective suppressers of cytokine production in vitro and reduce serum levels of tumor necrosis factor alpha (TNF- ⁇ ) in animal models of septic shock (Sekut et al., 1995; Pettipher et al., 1996; Prabhakar et al., 1994).
  • TNF- ⁇ tumor necrosis factor alpha
  • Inhibition of TNF- ⁇ production may be central to the beneficial effects of PDE4 inhibition in treatment of inflammatory conditions, but inhibition of the release of chemoattractants such as the ⁇ -chemokine interleukin-8 and the lipid leukotriene (LT)B may also be important for reducing leukocyte recruitment to sites of inflammation (Turner et al., 1994; Griswold et al., 1993).
  • chemoattractants such as the ⁇ -chemokine interleukin-8 and the lipid leukotriene (LT)B
  • PDE4 inhibition also stimulates macrophages to produce and release the antiinflammatory cytokine interleukin 10 (IL-10) when challenged with lipopolysaccharide (LPS) in vitro (Kambayashi et al., 1995; Jilg et al., 1996), and this same effect may be involved in the protective action of methylxanthines, which are general PDE inhibitors, in a murine model of septic shock (Jilg et al., 1996).
  • IL-10 cytokine interleukin 10
  • LPS lipopolysaccharide
  • Inhibition of neutrophil activation in vivo may also be how PDE4 inhibition protects against acute lung injury induced by LPS followed by zymosan in a murine model (Miotla et al., 1995), and in animal models of asthma, it is likely that PDE4 inhibition suppresses allergic inflammation by inhibition of eosinophil activation together with inhibition of mast cell de-granulation (Hughes et al., 1996).
  • PDE4 inhibition has also been shown to affect the in vitro expression and presentation of cell adhesion molecules such as E-selectin by endothelial cells of the microvasculature (Blease et al, 1998; Morandini et al., 1996) and increased cAMP also prevents mediator- induced upregulation of ⁇ 2 integrins on the surface of eosinophils and neutrophils (Teixeira et al., 1996). Inhibition of the cell adhesion components responsible for recruitment of leukocytes and for initiation of tissue infiltration by the inflammatory cells is an important aspect of therapeutic control for inflammatory conditions. cAMP-elevating agents also enhance apoptotic clearance of various leukocytes in vitro (Hallsworth et al., 1996), and this too may be useful effect in the control of inflammation through PDE4 inhibition.
  • cell adhesion molecules such as E-selectin by endothelial cells of the microvasculature
  • cAMP also prevent
  • the major cGMP-degrading PDEs are types 1 ,2,5, 6, 9 and 10 but here we focus on PDE5, since this is the principal cGMP-specific PDE found in airway and vascular smooth muscle, and it is one of the better documented families ofcGMP-specific PDEs. Little is known yet concerning the role of the newly discovered PDE9 and PDE10 isoforms (Soderling et al., 1998; Fisher et al., 1998; Soderling et al., 1999; Fujishige et al., 1999), and the situation is similar for PDE2s, since good inhibitors are as yet unknown for these (Perry and Higgs, 1998).
  • PDE5 is activated by cAK and (10-fold faster) by cGK (Thomas et al., 1990). Phosphorylation of PDE5 is enhanced in the presence of cGMP, and apparently increases the enzyme's V max by 10-fold (Burns et al., 1992). Coupled with PDE3, these interactions form a feedback system to limit cGMP signaling: increased cGMP will increase cAMP through inhibition of PDE3, high cAMP will activate cAK which, in the presence of elevated cGMP will activate PDE5 and therefore stimulate cGMP breakdown. cAMP levels return to baseline as cGMP falls, by re-activation of PDE3.
  • PDE5 may have additional protein components associated with it analagous to the gamma subunits of PDE6.
  • the PDE6 ⁇ subunits serve to link activation of the G-protein transducin to activation of the PDE. They are subsequently involved in turning off the signal by helping to activate the transducin GTPase.
  • these associated proteins 14 to 18 kDa
  • cGMP-degrading PDEs work in concert with the action of guanylate cyclases, just as cAMP PDE:s and adenylate cyclases together control cAMP levels in cells.
  • Two groups of GCs are known in mammals, the soluble ones and those that are membrane located. GCs from both groups are central to systemic control of blood pressure. Soluble GCs are expressed in almost all cell types of the cardiovascular system including cardiomyocytes, vascular smooth muscle cells (VSMCs), endothelial cells and platelets (Drewett and Garbers, 1994).
  • Soluble GCs contain a prosthetic heme group which binds NO (and CO) and leads to activation of the enzyme: the vasoactive properties of NO are mediated through the cGMP pathway in this way.
  • the membrane located GCs act as receptors for various ligands (among them, natriuretic peptides and guanylin).
  • cGMP-mediated functions of the natriuretic hormone receptors include vascular smooth muscle relaxation as well as regulation of blood volume (Benner et al., 1990).
  • cGMP interacts with a number of different effector proteins: a) with certain ion channels e.g.
  • cGKI and cGKII cGMP-dependent protein kinases
  • cGKI variants are found in vascular smooth muscle (Keilbach et al., 1992, Hofmann et al., 1992); c) at high concentrations, with cAMP-dependent protein kinases (cAK), which being similar to the cGKs have a certain affinity for cGMP, just as the reverse is also true (Vaandrager & de Jonge, 1996).
  • cAK cAMP-dependent protein kinases
  • cGMP binds to a non-catalytic site of PDE2 and lowers its K m for cAMP, lowering the baseline level of cAMP achievable by the enzyme.
  • PDE3 catalysis of cAMP is effectively inhibited by cGMP (Pyne et al., 1987), thus in cells where PDE3 predominates, increased cGMP leads to increased cAMP.
  • cGK1 relaxes smooth muscle by lowering free cytoplasmic Ca 2+ levels, but the principal means by which this is accomplished varies considerably between types of smooth muscle, animal species, and the nature of the contractile stimulus being antagonised (Vaandrager & de Jonge, 1996).
  • cGKI has been implicated in: inhibition of G-protein activation of phospholipase C ⁇ ; activation of Ca 2+ -ATPase activity at plasma membrane and sarcoplasmic reticulum (SR); hyperpolarisation of membrane potential through activation of Ca 2+ -activated K + channels; inhibition of voltage operated Ca + channels; stimulation of the Na7Ca 2+ exchanger; inhibition of SR IP 3 receptors. All of these actions require that the normally cytoplasmic cGKs must find membrane located targets, and specific anchor proteins may be involved. cGKI is already known to be targeted to specific anchor proteins of the cytoskeleton (MacMillan-Crow & Lincoln, 1994), and the discovery of further interactions is likely.
  • Blood pressure elevation to a degree that requires medical treatment is often encountered in up to 15% of an adult population. In only 10-15% of these, a definite cause for the hypertension can be found and in the rest, the "essential hypertension" has to be treated without a hope for cure of the underlying disease. Long-standing elevation of blood pressure, even quite moderate, damages vessels in the heart, kidneys and brain and dramatically increases the risk for coronary heart disease, renal failure and stroke. It has been shown that effective pharmacologic treatment of hypertension substantially reduces morbidity and mortality from these conditions.
  • endothelial cells produce a local vascular relaxation factor, identified as nitric oxide (NO), that activates guanylyl cyclase and increases cGMP that in turn leads to reduction in vascular smooth muscle cell tone, has opened new possibilities for blood pressure regulation / vasorelaxation based on modulation of the cellular levels of cGMP.
  • NO nitric oxide
  • a number of the components in the cGMP system displays tissue specific distribution (Vaandrager & de Jonge, 1996; Pyne etal., 1996). This increases the likelihood for improved pharmacological specificity and fewer side-effects when using these as targets for antihypertensive treatment instead of the traditional ones.
  • Isoform-specific inhibitors for PDE5 are being developed by several companies and one compound from Pfizer, Sildenafil, has proven selectivity for PDE5 and is currently being marketed as treatment against impotence (Viagra), originally a side-effect resulting from vasorelaxation in the corpus cavernosum.
  • the screening procedures currently used search only for direct enzymatic inhibitors of PDE and the compounds found are 5 often not selective, inhibiting for instance both PDE 1 and 5 (e.g. Zaprinast (M&B 22948 RPR), Sch 59498 and Sch 51866).
  • the therapeutic potential of selective modulators of cGMP-related PDE action is not restricted to relaxation of smooth muscle cells but also encompasses other effects ascribed to PKG, such as inhibition of platelet activation (Chiu et al., 1997: Vemulapalli
  • a known inhibitor of the catalytic activity of a particular class of PDE:s may have on cyclic nucleotide levels often varies between different cell types.
  • the reasons for this are several, but include: differences in the basal level of cyclase activity in distinct cell types, crosstalk between cAMP and cGMP systems, and differences in
  • PDE inhibition is only useful if it produces the appropriate change in the activity of the dependent effectors, for instance activation of cAK when the concentration of cAMP can be increased above a threshold level.
  • the rate of change in concentration depends in part on the activity of the cyclases which generate the cyclic nucleotides, and that basal level of activity differs from isoform to isoform, and therefore from cell type to cell type.
  • AC activity is high and cAMP levels are kept at baseline only by a correspondingly high PDE activity.
  • Hepatocytes on the other hand have a rather low AC activity. If both cell types share PDE:s of the same family, and are treated with a chemical inhibitor targeting that family, there will be a rapid increase in cAMP within adipocytes and activation of their cAKs, but no activation in hepatocytes, unless the AC is also stimulated.
  • Atrial natriuretic factor elevates cGMP but inhibits cAMP-stimulated aldosterone synthesis via cGMP-stimulation of PDE2 (MacFarland et al., 1991 ).
  • the expected effects of PDE inhibition may be modified by differences in local concentrations of substrates, the reason being that most chemical inhibitors of PDE action are competitive with substrate, so their therapeutic profile is dependent on both the Michaelis-Menton equilibrium constant (K M ) and the substrate concentration in which they are operating (Perry and Higgs, 1998). Most effective inhibition will always occur at lowest substrate levels, but as a corollary, a locally increased substrate level will reduce the inhibition attained.
  • Targeting of signalling enzymes is a recognised mechanism by which sensitivity, specificity, precision and control may be introduced into intracellular signalling pathways
  • 35 associated proteins include both integral and peripherally adherent species. Such interactions have been probed at a gross level through the use of nonionic detergents and elevated ionic strength (Scotland et al., 1998).
  • PDE4A-D human and rat
  • PDE4A-D human and rat
  • each of these produces multiple splice variants (more than 20 described to June 98), many with unique amino terminal regions
  • Some variants have extensive deletions, even to the point of removing catalytic activity (Obernolte et al., 1997).
  • Differences in the amino terminal regions are presently contemplated to be important for determining differences in the subcellular localisation, activity and sensitivity to inhibitors amongst PDE4 isozymes (Bolger, 1997; Scotland et al., 1998).
  • PDE4D1 and PDE4D2 are found only in cytosolic fractions, PDE4D3, D4 & D5 are all represented in both cytosolic and particulate fractions.
  • PDE4D3 and D5 are both more sensitive to rolipram inhibition in the cytosolic phase than they are in the particulate fraction (Bolger et al., 1997).
  • PDE4B2 is approximately 10 fold more sensitive to rolipram in the particulate fraction than in the cytosolic (Huston et al., 1997).
  • Certain PDE4 isozymes are known to have restricted tissue distributions, e.g.
  • PDE4A8 and PDE4C-delta54 are found only in testis, PDE4C-791 in lung and a melanoma cell line G361 (Bolger et al., 1996; Obernolte et al., 1997). In other cells the expression of isozymes changes with cellular differentiation (Verghese et al., 1995; Giorgi et al., 1997; Bolger et al., 1994; Essayan et al., 1997).
  • PDE4 isozymes are known to associate with membranes, some with proteins bearing SH3 domains, and some to be purely cytosolic (Scotland et al., 1998; Bolger et al., 1997).
  • a variant of PDE4A (“RD1") transfected into human thyroid carcinoma lines accumulates specifically in Golgi, and at the same time inhibits all expression of "native" PDE1 in those cells (Pooley et al., 1997). These distinct locations are believed to reflect very different functions of the specific phosphodiesterases.
  • RD1 PDE4A
  • PDE4 Specific inhibition of PDE4 suppresses ROM production, but not proliferation.
  • Specific inhibition of PDE3 inhibits proliferation but not ROM production (Chini et al., 1997). Both responses are mediated by PKA but control of the cAMP pool is effectively separated.
  • Certain PDE4 isozymes are activated by anionic phospholipids such as phosphatidyl serine and phosphatidic acid (Disanto et al., 1995; Nemoz et al., 1997). Dislocation from the membrane will inhibit such activation, and crosstalk with phopholipid signalling systems.
  • Targeting or anchoring of PDE4 is likely to have its greatest effect through compartmentalisation of cAMP signalling within cells (Houslay and Milligan, 1997). Associated with the PDE4:s will be specific ACs together with specific isoforms of the effector cAK, or cAMP-operated ion channels. cAKs will likely be attached to specific AKAPs (A-kinase anchoring proteins). Specific subcellular distributions of these components have been mapped in cells (Houslay and Milligan, 1997; Scott and Pawson, 1997; Coghlan et al., 1995) and allow for spatial and temporal gradients of cAMP to be established within cellular compartments.
  • Targeted PDE4 species might serve to control threshold levels of cAMP in the environs of specific cAK molecules, perhaps protecting certain protein complexes from cAK-mediated phosphorylation or manipulating the activity levels of ACs that are necessary before cAK activation may occur.
  • rolipram For the family of PDE4 enzymes, the pyrollidone compound rolipram remains the "gold standard" reference inhibitor. However, its profile of serious side effects prevented rolipram from becoming a compound of clinical utility. Principal side effects of rolipram are headaches, nausea, emesis and an unacceptable increase in gastric acid secretion (Barnes, 1995). The PDE4 family is likely to consist of more than the 20 or so isoforms already known in humans (Houslay, Sullivan and Milligan, 1998).
  • PDE5s exist in two distinct forms: one membrane-bound (mPDE5) and one cytosolic (cPDE5) (Pyne et al., 1996).
  • the mPDE5 is activated by PKA and is inhibited by a G- protein dependent mechanism. It is assumed that cPDE5 is part of a "signalling cassette" with NO-regulated guanylate cyclase and PDE3. The latter construction will lead to very short-lived messages whereas the former allows for generation of prologed cGMP signals Targeting or anchoring of PDE5s is likely to have its greatest effect through compartmentalisation of cGMP signalling within cells.
  • cGKs may be attached to specific G-kinase anchoring proteins. Specific subcellular distributions of these components will allow for spatial and temporal gradients of cGMP to be established within cellular compartments.
  • Targeted PDE5 species might serve to control threshold levels of cGMP in the environs of specific cGK molecules, perhaps protecting certain protein complexes from cGK-mediated phosphorylation or manipulating the activity levels of GCs that are necessary before cGK activation may occur.
  • Competitive chemical inhibitors are known which can selectively inhibit PDE5s.
  • PDE5 Relatively few isoforms of PDE5 are known to date. PDE5 is found rather specifically in vascular and airway smooth muscle. That sildenafil, with its 5 nM IC 5 o for PDE5, affects only a subset of vascular smooth muscle is puzzling, but strongly suggests that either multiple PDE5 isoforms or states exist in different vascular smooth muscle, presumably with different sensitivities to sildenafil, or more likely, other cGMP-hydrolysing PDEs are important in different vascular smooth muscles.
  • PDE9 s have only been known since the end of 1997, PDE10:s since late 1998.
  • PDE9 s have a rather general distribution (kidney, brain, lung), have a very high affinity for cGMP (about 70 nM) and are inhibitable by the PDE1/5 inhibitor SCH51866 (1.55 ⁇ M), but "not by sildenafil” (7 ⁇ M, Soderling et al., 1998).
  • PDEs possess heterogenity, particularly in their amino terminal, or "regulatory" regions, and the approach outlined in this application exploits those differences between isoforms and splice variants to produce what should be confined and defined therapeutic effects. Furthermore, in many cases it may be expected that dislocation of an active enzyme from a targeted site of action will have little effect on average cellular concentrations of their preferred cyclic nucleotide substrate, although significant increases may occur at the now PDE-free site of action. This may have significance where an acute short-term process is the therapeutic target, but an integrative gene-regulation effect may occur upon general, non-specific PDE inhibition and overall cyclic nucleotide increase in the cell.
  • influence covers any influence to which the cellular response comprises a redistribution.
  • heating, cooling, high pressure, low pressure, humidifying, or drying are influences on the cellular response on which the resulting redistribution can be quantified, but perhaps the most important influence is the influence of contacting or incubating the cell or cells with a substance which is known or suspected to cause a redistribution or modify a change of redistribution.
  • the influence could be substances from a compound drug library.
  • GFP green fluorescent protein
  • the term "green fluorescent protein” is intended to indicate a protein which, when expressed by a cell, emits fluorescence upon exposure to light of the correct excitation wavelength (cf. Chalfie, M. et al. (1994) Science 263, 802-805).
  • GFP in which one or more amino acids have been substituted, inserted or deleted is also termed “modified GFP”.
  • GFP as used herein includes wild-type GFP derived from the jelly fish Aequorea victoria and modifications of GFP, such as the blue fluorescent variant of GFP disclosed by Heim et al. (Heim, R. etal. (1994). Proc.Natl.Acad.Sci.
  • GFP variants are F64L-GFP, F64L-Y66H-GFP and F64L-S65T-GFP.
  • An especially preferred variant of GFP for use in all the aspects of this invention is EGFP (DNA encoding EGFP which is a F64L-S65T variant with codons optimized for expression in mammalian cells is available from Ciontech, Palo Alto, plasmids containing the EGFP DNA sequence, cf. GenBank Ace. Nos. U55762, U55763).
  • intracellular signalling pathway and “signal transduction pathway” are intended to indicate the coordinated intracellular processes whereby a living cell transduces an external or internal signal into cellular responses.
  • Said signal transduction will involve an enzymatic reaction said enzymes include but are not limited to protein kinases, GTPases, ATPases, protein phosphatases, phospholipases and cyclic nucleotide phosphodiesterases.
  • the cellular responses include but are not limited to gene transcription, secretion, proliferation, mechanical activity, metabolic activity, cell death.
  • second messenger is used to indicate a low molecular weight component involved in the early events of intracellular signal transduction pathways.
  • luminophore is used to indicate a chemical substance which has the property of emitting light either inherently or upon stimulation with chemical or physical means. This includes but is not limited to fluorescence, bioluminescence, phosphorescence, chemiluminescence.
  • mechanically intact living cell is used to indicate a cell which is considered living according to standard criteria for that particular type of cell such as maintenance of normal membrane potential, energy metabolism, proliferative capability, and has not experienced any physically invasive treatment designed to introduce external substances into the cell such as microinjection.
  • permeabilised living cell is used to indicate cells where a pore forming agent such as Streptolysin O or Staphylococcus Aureus ⁇ -toxin has been applied and thereby incorporated into the plasma membrane in the cells.
  • a pore forming agent such as Streptolysin O or Staphylococcus Aureus ⁇ -toxin has been applied and thereby incorporated into the plasma membrane in the cells.
  • Pores could also be made by electroporation, i.e. exposing the cells to high voltage discharges, a procedure that creates small holes in the plasma membrane by coagulating integral membrane proteins. Treatment with a mild detergent such as saponin may accomplish the same thing. Common to all these treatments is that pores are formed only in the plasma membrane without affecting the integrity of cytoplasmic structural elements and organelles.
  • the term living in this context means that the permeabilised cell or cells bathed in a solution mimicking the intracellular milieu still have functional organelles, such as actively respiring mitochondria and endoplasmatic reticulum that can take up and release calcium ions, and functional structural elements.
  • this method is applied so that substances that normally can not traverse the plasma membrane, but most likely exert their influence intracellularly, can be introduced and their influence studied.
  • this method is used to record the response to an influence from many cells simultaneously.
  • permeabilisation is intended to indicate the selective disruption of the plasma membrane barrier so that soluble substances freely mobile in the cytosol may be lost from the interior of the cells.
  • the permeabilisation can be achieved as described above under “permeabilised living cells” or by using other chemical detergents such as Triton X-100 or digitonin in carefully titrated amounts.
  • image processing and “image analysis” are used to describe a large family of digital data analysis techniques or combination of such techniques which reduce ordered arrays of numbers (images) to quantitative information describing those ordered arrays of numbers.
  • images images
  • the quantitative information derived is therefore a measure of the physical process.
  • mammalian cell is intended to indicate any living cell of mammalian origin.
  • the cell may be an established cell line, many of which are available from The American Type Culture Collection (ATCC, Virginia, USA) or a primary cell with a limited life span derived from a mammalian tissue, including tissues derived from a transgenic animal, or a newly established immortal cell line derived from a mammalian tissue including transgenic tissues, or a hybrid cell or cell line derived by fusing different celltypes of mammalian origin e.g. hybridoma cell lines.
  • the cells may optionally express one or more non-native gene products, e.g. receptors, enzymes, enzyme substrates, prior to or in addition to the fluorescent probe.
  • Preferred cell lines include but are not limited to those of fibroblast origin, e.g. BHK, CHO, BALB, or of endothelial origin, e.g. HUVEC, BAE (bovine artery endothelial), CPAE (cow pulmonary artery endothelial), HLMVEC (human lung microvascular endothelial cells), or of airway epithelial origin, e.g. BEAS- 2B, or of pancreatic origin, e.g. RIN, INS-1 , MIN6, bTC3, aTC6, bTC6, HIT, or of hematopoietic origin, e.g.
  • endothelial origin e.g. HUVEC, BAE (bovine artery endothelial), CPAE (cow pulmonary artery endothelial), HLMVEC (human lung microvascular endothelial cells
  • airway epithelial origin e.g. BEAS- 2B
  • adipocyte origin e.g. 3T3-L1
  • human pre-adipocytes or of neuroendocrine origin, e.g. AtT20, PC12, GH3, muscle origin, e.g. SKMC, A10, C2C12, renal origin, e.g. HEK 293, LLC-PK1 , or of neuronal origin, e.g. SK-N-DZ, SK-N-BE(2), HCN-1A, NT2/D1.
  • hybrid polypeptide is intended to indicate a polypeptide which is a fusion of at least a portion of each of two proteins, in this case at least a portion of the green fluorescent protein, and at least a portion of a catalytic and/or regulatory domain of a protein kinase. Furthermore a hybrid polypeptide is intended to indicate a fusion polypeptide comprising a GFP or at least a portion of the green fluorescent protein that contains a functional fluorophore, and at least a portion of a biologically active polypeptide as defined herein provided that said fusion is not the Glucocorticoid Receptor-GFP disclosed by Carey, KL et al.
  • GFP may be N- or C-terminally tagged to a biologically active polypeptide, optionally via a linker portion or linker peptide consisting of a sequence of one or more amino acids.
  • the hybrid polypeptide or fusion polypeptide may act as a fluorescent probe in mechanically intact or permeabilised living cells carrying a DNA sequence encoding the hybrid polypeptide under conditions permitting expression of said hybrid polypeptide.
  • hybrid polypeptide or fusion polypeptide is intended also to include the term "fluorescent probe", where the latter is used to indicate a fluorescent fusion polypeptide comprising a GFP or any functional part thereof which is N- or C-terminally fused to a biologically active polypeptide as defined herein, optionally via a peptide linker consisting of one or more amino acid residues, where the size of the linker peptide in itself is not critical as long as the desired functionality of the fluorescent probe is maintained.
  • a fluorescent probe according to the invention is expressed in a cell and basically mimics the physiological behaviour of the biologically active polypeptide moiety of the fusion polypeptide.
  • kinase is intended to indicate an enzyme that is capable of phosphorylating a cellular component.
  • protein kinase is intended to indicate an enzyme that is capable of phosphorylating serine and/or threonine and/or tyrosine in peptides and/or proteins.
  • phosphatase is intended to indicate an enzyme that is capable of dephosphorylating phosphoserine and/or phosphothreonine and/or phosphotyrosine in peptides and/or proteins.
  • cyclic nucleotide phosphodiesterase is intended to indicate an enzyme that is capable of inactivating the second messengers cAMP and cGMP by hydrolysis of their 3'-ester bond.
  • biologically active polypeptide is intended to indicate a polypeptide affecting intracellular processes upon activation, such as an enzyme which is active in intracellular processes or a portion thereof comprising a desired amino acid sequence which has a biological function or exerts a biological effect in a cellular system.
  • polypeptide one or several amino acids may have been deleted, inserted and/or replaced to alter its biological function, e.g. by rendering a catalytic site inactive or by disrupting the targeting sequence.
  • one or several amino acids may have been deleted, inserted and/or replaced without altering the biological function of the polypeptide, that is, it remains biologically equivalent.
  • the biologically active polypeptide is selected from the group consisting of proteins taking part in an intracellular signalling pathway, such as enzymes involved in the intracellular phosphorylation and dephosphorylation processes including kinases, protein kinases and phosphorylases as defined herein, but also proteins making up the cytoskeleton play important roles in intracellular signal transduction and are therefore included in the meaning of "biologically active polypeptide" herein.
  • the biologically active polypeptide is a protein which according to its state as activated or non-activated changes localisation within the cell, preferably as an intermediary component in a signal transduction pathway. Included in this preferred group of biologically active polypeptides are cAMP dependent protein kinases, 'inhibitor of NF-kappaB' kinases, and cyclic nucleotide phosphodiesterases.
  • the term "a substance" is intended to indicate any sample which has a biological function or exerts a biological effect in a cellular system.
  • the sample may be a sample of a biological material such as a sample of a body fluid including blood, plasma, saliva, milk, urine, or a microbial or plant extract, an environmental sample containing pollutants including heavy metals or toxins, or it may be a sample containing a compound or mixture of compounds prepared by organic synthesis or genetic techniques.
  • any change in fluorescence means any change in absorption properties, such as wavelength and intensity, or any change in spectral properties of the emitted light, such as a change of wavelength, fluorescence lifetime, intensity or polarisation, or any change in the intracellular localisation of the fluorophore. It may thus be localised to a specific cellular component (e.g. organelle, membrane, cytoskeleton, molecular structure) or it may be evenly distributed throughout the cell or parts of the cell.
  • a specific cellular component e.g. organelle, membrane, cytoskeleton, molecular structure
  • organism indicates any unicellular or multicellular organism preferably originating from the animal kingdom including protozoans, but also organisms that are members of the plant kingdoms, such as algae, fungi, bryophytes, and vascular plants are included in this definition.
  • nucleic acid is intended to indicate any type of poly- or oligonucleic acid sequence, such as a DNA sequence, a cDNA sequence, or an RNA sequence.
  • biologically equivalent as it relates to proteins is intended to mean that a first protein is equivalent to a second protein if the cellular functions of the two proteins may substitute for each other, e.g. if the two proteins are closely related isoforms encoded by different genes, if they are splicing variants, or allelic variants derived from the same gene, if they perform identical cellular functions in different cell types, or in different species.
  • biologically equivalent as it relates to DNA is intended to mean that a first DNA sequence encoding a polypeptide is equivalent to a second DNA sequence encoding a polypeptide if the functional proteins encoded by the two genes are biologically equivalent.
  • fixed cells is used to mean cells treated with a cytological fixative such as glutaraldehyde or formaldehyde, treatments which serve to chemically cross-link and stabilize soluble and insoluble proteins within the structure of the cell. Once in this state, such proteins cannot be lost from the structure of the now-dead cell.
  • a cytological fixative such as glutaraldehyde or formaldehyde
  • a "quantitative fluorescence redistribution assay” is intended to indicate an assay whereby it is possible to observe and quantify the subcelluar localisation and possible redistribution of an biologically active polypeptide, or part thereof, genetically or chemically tagged with a luminophore inside an intact living cell or cells or permeabilised living cells.
  • the subcelluar location and redistribution may be monitored using fluorescence microscopy or fluorescence imaging microscopy but is preferably monitored using a fluorescence imaging plate reader or a fluorescence plate reader for improved throughput.
  • a "mortal cell line” is used to indicate animal cells that may grow in vitro, given the right conditions, but that have a definite life span of a number of cell divisions or days, week or months beyond which it is not at present possible to keep them alive.
  • an " immortalised cell line” is used to indicate cells of animal origin where the normal limitations for cell life and number of cell divisions do not apply. Essentially, such cells can live, grow and divide for an unlimited or very long (years to decades) time.
  • the term 'targeting sequence is used to indicate the amino-acid sequence of a biologically active polypeptide that contains the actual structure or structures necessary for association of the biologically active polypeptide with its native intracellular binding sites.
  • targeting sequence is also used to indicate the amino-acid sequence of a protein that contains the actual structure or structures necessary for association of a biologically active polypeptide with the protein.
  • targeting is used to indicate the process whereby a spatially distributed protein is directed to the intracellular sites and maintained at the intracellular sites to which it is normally anchored or associated. These anchoring sites are normally assumed to be the intracellular sites where the protein has its optimal function for the cell.
  • locate and derivatives thereof is used to indicate the process whereby an intracellularly spatially distributed protein is forced to detach from its normal anchoring or association structures in the cells due to intercalation of another, preferably smaller, compound at the site of anchoring or association. This usually means that the optimal function of the protein within the cell is lost or reduced and that a larger portion of the protein molecules are freely mobile within the cytoplasm.
  • screening assay is intended to mean any measurement protocol, including materials, cells, instruments, chemicals, reagents, detection units, calibration and quantification procedures used to measure a response from mechanically intact or permeabilised living cells relevant to influences on an intracellular pathway.
  • a "primary screening assay” is used to indicate the first screening assay in a discovery project that is used to select and sort all compounds available to the project according to the quantified effect of the compounds in the assay.
  • a "counterscreen” is intended to mean a screening assay that is relevant to a phenomenon that is undesirable seen from the point of view of the discovery project.
  • a "discovery project” is intended to mean the process whereby general or specific ideas about ways of how to modulate an intracellular signalling pathway are exploited in order to find new chemical compounds that can be used to modulate the intracellular signalling pathway and thereby treat, reduce or abolish symptoms associated with a condition or a disease that is lethal, degenerative, performance-reducing or just uncomfortable to an animal, preferably a human being.
  • the aim of the discovery project is to produce drug candidates that can be tested as potential drugs in an animal, preferably in human beings.
  • the term "discovery project” also encompasses the actual group of individuals, screening assays, tests, machinery, cells, animals and compounds involved in different aspects of the project.
  • the term 'lagging is used to indicate the process whereby a luminophore is genetically or chemically attached to the protein, or part of the protein, of interest to the discovery project.
  • primary hit is used to indicate compounds identified in the primary screening assay as having at least the minimum level of desired effect that has been specified in the discovery project.
  • primary lead compound is used to indicate a primary hit that has at least the minimal level of desired potency and specificity predetermined by the discovery project.
  • dose-response relationship is in the present context intended to mean a clear correlation between the quantified response of cells in a screening assay to application of an influence, such as a compound, and the concentration of the applied influence.
  • the response to the influence may be both an up-regulation and a down-regulation of the quantitated parameter used in the screening assay.
  • the term "potency" is intended to mean the ability of an influence to affect the process under study.
  • the process under study may be, for example a screening assay or a specific physiological or pathophysiological response in an animal.
  • the term "selectivity" is intended to mean the difference in potency on the desired process, such as a screening assay, and an undesired process, such as a counterscreen, with the view of the discovery project. An influence or a compound is said to display selectivity if the potency for the desired process is higher than for the undesired process.
  • structure-activity relationship or "SAR” is intended to mean the situation where a direct relationship exists between a compound and modifications made to the compound and the activity of the compound and the modifications made to the compound in one or more screening assays. The process of building a SAR may be used to direct the chemical construction of new compounds with higher potency and selecivity than the original compound.
  • drug candidate lead is used to indicate compounds that may be pursued by a discovery project as potential candidates for the final outcome of the project.
  • the term “efficacy” is intended to mean the ability of a compound to affect the process or condition under study. It is closely related to the term “potency” but is in the present context used when relating to effects of a compound on more complex screening assays than the primary screening assay or counterscreens and when relating to effects of a compound in animals.
  • toxicity is intended to mean that a compound in some way is toxic to cells, tissues or animals.
  • the toxicity means that the cells, tissues or animals will in some way be harmed if the compound is applied at a sufficient concentration. The effects may ultimately lead to cell, tissue or animal death or a limited life compared to the normal condition.
  • physiology is intended to mean the normal function of biological and biochemical processes inside cells, between cells and in the whole organism or animal.
  • pathophysiology is intended to mean deviations from the normal function of biological and biochemical processes inside cells, between cells and in the whole organism or animal that may be part of a condition or disease.
  • the term "pathogenesis” is intended to mean the process, be it genetical, biological, biochemical, chemical or environmental, that ultimately may explain, at least in part, the apparent pathophysiology associated with a condition or disease in an animal.
  • the term "fractionated cells” is intended to mean the outcome of a simple division of initially mechanically intact living cells into two fractions, particulate (the components that can be sedimented by centrifugation at more than 10 OOOxg and not more than 100 OOOxg for 10 minutes) and soluble fraction (the soluble components and small membrane fragments that do not sediment), after subjecting the cells to plasma membrane disruption either mechanically with some form of homogeniser or sonicator or osmotically (hypoosmotic shock) or through some kind of permeabilisation of the plasma membrane with detergents, toxins or electroporation.
  • parenteral route of administration is used to indicate the administration of a drug or compound in solution to an animal, such as a mammal or a human, by injection or infusion of the drug or compound into the bloodstream of the animal via an injection needle iserted into one of the animals blood vessels, preferably a vein.
  • oral route of administration is used to indicate the administration of a drug or compound in solution or as a solid to an animal, such as a mammal or a human, by placing the drug or compound in the mouth of the animal so that the animal itself can swallow the drug or compound or have it delivered to the stomach or intestine by intubation.
  • an animal such as a mammal or a human
  • oral route of administration is used to indicate the administration of a drug or compound in solution or as a solid to an animal, such as a mammal or a human, by placing the drug or compound in the mouth of the animal so that the animal itself can swallow the drug or compound or have it delivered to the stomach or intestine by intubation.
  • the drug or compound enters the stomach and intestine it will be taken up over the mucosa into the bloodstream and administered via the blood stream to the tissues and organs where it is to exert its effect, or it will be acting locally in the stomach and intestine.
  • pulmonary route of administration is used to indicate the administration of a drug or compound as an aerosol with either solid or liquid particles to an animal, such as a mammal or a human, by placing the drug or compound container close to or in contact with the mouth and/or nose of the animal so that the animal itself can inhale the drug or compound aerosol.
  • the drug or compound enters the peripheral bronchioloi and alveoli it will be taken up over the alveolar membrane, either into the bloodstream and administered via the blood stream to the tissues and organs where it is to exert its effect or it will act locally in the lungs on lung, vessel and muscle cells as well as any other cell type present there.
  • the term "cutaneous route of administration" is used to indicate the administration of a drug or compound in solution or as a solid to an animal, such as a mammal or a human, by placing the drug or compound on the skin of the animal.
  • the drug can then enter the blood vessels under the skin as it is permeaing the skin and thereby be taken up into the bloodstream and administered via the blood stream to the tissues and organs where it is to exert its effect. It may also exert an effect locally on the site of application on the skin.
  • rectal route of administration is used to indicate the administration of a drug or compound in solution or as a solid to an animal, such as a mammal or a human, by placing the drug or compound in the rectal cavity of the animal.
  • an animal such as a mammal or a human
  • the drug or compound enters the rectum and parts of the large intestine it will be taken up over the mucosa into the bloodstream and administered via the blood stream to the tissues and organs where it is to exert its effect, or it will act locally in the rectum and parts of the large intestine.
  • IKKs and very many phosphodiesterases are known. They are grouped in families according to functional criteria. Within each family there may be several members - isoforms- encoded by different genes. Each isoform may give rise to several splice variants. This hierarchy is evidenced at the sequence level: isoforms are more similar to each other than to members of other families; splice variants are more similar to each other than to other PDE:s. Each specific PDE thus contains sequences that are unique to itself, as well as sequences that are shared between isoforms and/or families.
  • a first criterion is that it is imperative that the target IKK or PDE be present in the tissue or cell type(s) where the pharmacological agent is to exert its effect.
  • a second criterion is that it is desirable that either the target or a specific anchoring/targeting site not be present in tissues or cell types where no pharmacological effects are desired.
  • mRNA isolated from a given source is probed with a labelled nucleotide, whose sequence is complementary to the mRNA or a region in a mRNA of interest.
  • the assay allows the investigator to determine the stringency of the probing, i.e. to correlate the resulting signal(s) with sequence similarities.
  • nucleotide sequences of IKKs or PDE:s are compiled and inspected to identify regions that are unique to specific IKKs or PDE:s as well as regions that are shared among several, many, or all IKKs or PDE:s.
  • Nucleotide sequences may be found in a depository of genetic information, e.g. GenBank, which is a well known resource. The inspection of the sequences may be aided by using computer programs that were developed to align several or many sequences, and in so doing highlighting regions of similarity or lack of the same. Many of these are presented and explained in great detail in e.g. Sequence Data Analysis Guidebook /edited by S.R.Swindell, Methods in Molecular Biology vol.
  • oligonucleotide probes based on these sequences may be designed and synthesized.
  • the use of such probes to detect mRNA is well established in the research community, see e.g. Basic DNA and RNA Protocols/edited by A.J.Harwood, Methods in Molecular Biology vol. 58 (1996), from Humana Press Inc. Totowa, New Jersey. E.g. Life Technologies offer to synthesize specified oligonucleotides.
  • RNA extracted from the tissues and cell types of interest is required, preferably in a form ready to use in Northern analysis.
  • Several companies offer such material, e.g. Invitrogen and Clontech. Briefly, they provide RNA extracted from a great many human and non-human tissues or cell types immobilized on membranes, as an array or size-fractionated.
  • a detectable label needs to be attached to the oligonucleotide probe(s).
  • the label is traditionally in the form of a radioactive isotope, but may to advantage be a chemiluminescent reagent or a fluorescent agent. See e.g.
  • DNA Probes by Keller and Manak (1993), from Macmillan Publishers. Several companies offer reagents to label nucleotide probes, e.g. Ambion (Austin, Texas) and Molecular Probes (Eugene, Oregon).
  • the actual probing procedure involves contacting the immobilized mRNA (s) with the probe(s), washing away unbound probe(s) and detecting the signal(s) from the probe(s) that bound under the conditions tested, a positive signal indicating that the target(s) of the probe(s) was present in the sample(s) subjected to the test.
  • the test is "one-to-one", i.e. each sample of mRNA is exposed to each probe.
  • IKKs or PDE sequence hierarchy of the IKKs or PDE:s, by first probing arrays of mRNA from multiple sources with family-specific probes, then examining first positives with isotype-specific probes, and then examining the secondary positives in detail with very specific probes.
  • the outcome of the analysis is information regarding the expression pattern(s) of IKKs and PDE:s.
  • IKKs and/or PDE:s are then selected for further study, and genetic probes are constructed.
  • a genetic probe i.e. a "GeneX"-GFP fusion or a GFP-"GeneX” fusion
  • the fusion may contain a short vector derived sequence between "GeneX” and GFP (e.g. part of a multiple cloning site region in the plasmid) resulting in a peptide linker between "GeneX” and GFP in the resulting fusion protein.
  • the fusion may be made using ploymerase chain reaction techniques, which are common laboratory procedures, see e.g. PCR Protocols/edited by B.A.White, Methods in Molecular Biology vol. 15 (1993), from Humana Press Inc. Totowa, New Jersey.
  • the top-strand primer encompasses the ATG start codon of the gene and the following ca. 20 nucleotides, while the bottom-strand primer encompasses the stop codon and the ca. 20 preceding nucleotides, if the gene is to be fused behind GFP, i.e. a GFP-"GeneX” fusion. If the gene is to be fused in front of GFP, i.e. a "GeneX"-GFP fusion, a stop codon must be avoided.
  • the full length sequence of GeneX may not be used in the fusion, but merely the part which localizes and redistributes like GeneX in response to a signal.
  • the primers contain at least one recognition sequence for a restriction enzyme, to allow subsequent cloning of the PCR product.
  • the sites are chosen so that they are unique in the PCR product and compatible with sites in the cloning vector.
  • it may be necessary to include an exact number of nucleotides between the restriction enzyme site and the gene-specific sequence in order to establish the correct reading frame of the fusion gene and/or a translation initiation concensus sequence.
  • the primers always contain a few nucleotides in front of the restriction enzyme site to allow efficient digestion with the enzyme.
  • cDNA libraries from a great variety of tissues or cell types from various species are commercially available, e.g. from Clontech (Palo Alto), Stratagene (La Jolla) and Invitrogen (San Diego). Many genes are also available in cloned form from The American Type Tissue Collection (Virginia).
  • PCR reaction Optimizing the PCR reaction.
  • Several factors are known to influence the efficiency and specificity of a PCR reaction, including the annealing temperature of the primers, the concentration of ions, notably Mg 2+ and K + , present in the reaction, as well as pH of the reaction. If the result of a PCR reaction is deemed unsatisfactory, it might be because the parameters mentioned above are not optimal.
  • Various annealing temperatures should be tested, e.g. in a PCR machine with a built-in temperature gradient, available from e.g. Stratagene (La Jolla), and/or various buffer compositions should be tried, e.g. the OptiPrime buffer system from Stratagene (La Jolla).
  • OptiPrime buffer system from Stratagene (La Jolla).
  • the vector into which the amplified gene product will be cloned and fused with GFP will already have been taken into consideration when the primers were designed.
  • a vector When choosing a vector, one should at least consider in which cell types the probe subsequently will be expressed, so that the promoter controlling expression of the probe is compatible with the cells.
  • Most expression vectors also contain one or more selective markers, e.g. conferring resistance to a drug, which is a useful feature when one wants to make stable transfectants.
  • the selective marker should also be compatible with the cells to be used.
  • the actual cloning of the PCR product should present no difficulty for the person skilled in the art as it typically will be a one-step cloning of a fragment digested with two different restriction enzymes into a vector digested with the same two enzymes. If the cloning proves to be problematic, it may be because the restriction enzymes did not work well with the PCR fragment. In this case one could add longer extensions to the end of the primers to overcome a possible difficulty of digestion close to a fragment end, or one could introduce an intermediate cloning step not based on restriction enzyme digestion. Several companies offer systems for this approach, e.g. Invitrogen (San Diego) and Clontech (Palo Alto).
  • the resulting product usually a plasmid, should be carefully checked to make sure it is as expected. The most exact test would be to obtain the nucleotide sequence of the fusion- gene.
  • DNA construct for a probe Once a DNA construct for a probe has been generated, its functionality and usefulness may be tested by subjecting it to the following tests: - Transfecting it into cells capable of expressing the probe. The fluorescence of the cell is inspected soon after, typically the next day. At this point, two features of cellular fluorescence are noted:
  • the intensity should usually be at least as strong as that of unfused GFP in the cells. If it is not, the sequence or quality of the probe-DNA might be faulty, and should be carefully checked.
  • the sub-cellular localization is an indication of whether the probe is likely to perform well. If it localizes as expected for the gene in question, e.g. is excluded from the nucleus, it can immediately go on to a functional test. If the probe is not localized soon after the transfection procedure, it may be because of overexpression at this point in time, as the cell typically will have taken of very many copies of the plasmid, and localization will occur in time, e.g. within a few weeks, as plasmid copy number and expression level decreases. If localization does not occur after prolonged time, it may be because the fusion to GFP has destroyed a localization function, e.g. masked a protein sequence essential for interaction with its normal cellular anchor-protein.
  • a localization function e.g. masked a protein sequence essential for interaction with its normal cellular anchor-protein.
  • GFP-GeneX might, as two different parts of GeneX will be affected by the proximity to GFP. If this does not work, the proximity of GFP at either end might be a problem, and it could be attempted to increase the distance by incorporating a longer linker between GeneX and GFP in the DNA construct.
  • the probe should not be localized at this point, because such is the nature of the protein fused to GFP. It should then be subjected to a functional test.
  • a functional test the cells expressing the probe are treated with at least one compound known to perturb, usually by activating, the signalling pathway on which the probe is expected to report by redistributing itself within the cell. If the redistribution is as expected, e.g. if prior knowledge tell that it should translocate from location X to location Y, it has passed the first critical test. In this case it can go on to further characterization and quantification of the response.
  • the cell lacks at least one component of the signalling pathway, e.g. a cell surface receptor, or there is species incompatibility, e.g. if the probe is modelled on sequence information of a human geneproduct, and the cell is of hamster origin. In both instances one should identify other cell types for the testing process where these potential problems would not apply. If there is no prior knowledge about the pattern of redistribution, the analysis of the redistribution will have to be done in greater depth to identify what the essential and indicative features are, and when this is clear, it can go on to further characterization and quantification of the response.
  • the signalling pathway e.g. a cell surface receptor
  • species incompatibility e.g. if the probe is modelled on sequence information of a human geneproduct, and the cell is of hamster origin.
  • the problem might be as mentioned above, and the probe should be retested under more optimal cellular conditions.
  • cloning libraries for cloning of cDNA libraries in the present discovery plan are naturally related to the target tissues of the projects.
  • the cloning libraries should preferably be obtained from one ore more of the following tissue or cells types: Bronchial smooth muscle, Lung microvascular endothelial cells, eosinophil granulocytes, Th1 or 2 lymphocytes and alveolar macrophages.
  • the cloning libraries should preferably be obtained from one ore more of the following tissue or cell types: Th1 or 2 lymphocytes, T-lymphocytes, B-lymphocytes, Monocytes, Eosinophil granulocytes, Neutrophil granulocytes, Basophil granulocytes, Tissue specific macrophages (such as the liver Kupffer cells and skin Langhans cells), microvascular endothelial cells, vascular endothelial cells, antigen presenting cells, joint connective and synovial cells.
  • the cloning libraries should preferably be obtained from one or more of the various tissue regions of the brain containing noradrenergic neurons.
  • the cloning libraries should preferably be obtained from one or more of the various tissues of the brain such as the pineal gland, hypothalamus and substantia nigra.
  • the cloning libraries should preferably be obtained from one or more of the following tissue or cell types: vascular smooth muscle, vascular smooth muscle from resistance vessels on the arterial side of the vascular system, vascular smooth muscle from capacitance vessels on the venous side of the vascular system, vascular smooth muscle cells from small arteries, arterioles, venules or veins, smooth vascular cells lines such as T/G HA-VSMCA10 and A7r5.
  • the cells should always be of animal origin, most likely of mammalian origin and preferably of human origin.
  • the cells could be derived from normal tissue or from tissue of an individual animal having a disease or condition of interest for the project.
  • the cells may also be a mortal or immortalised cell line where the initial cell clone has been derived from a tissue or cell type as described above.
  • the cells of interest for screening assays will vary but may be chosen from the above mentioned categories.
  • the original fluorescent probe Once a genetic construct containing the protein of interest and the luminophore, from here on referred to as "the original fluorescent probe", has been transfected into a relevant cell type, as described above under 'preferred cell types for cloning libraries' the cells are monitored for the appearance of spatially distributed or randomly distributed intracellular fluorescence. Based on prior knowledge regarding the distribution of the actual protein different patterns can be expected. If for example previous studies have found the protein associated only with the particulate fraction of fractionated cells, it can be expected to find a spatial distribution of the original fluorescent probe to the plasma membrane, internal membrane/organelle structures or structural cytoplasmic elements such as microtubuies and microfilaments.
  • the stategy described herein is used to search for chemical entities which can interfere with the protein-protein interactions that occur amongst biologically active polypeptides and their anchoring/regulating partners, and thereby interfere with the effectiveness of a biologically active polypeptide's action within its cellular environment.
  • the strategy will have different effects, and require slightly different discovery methods depending on the nature of the interaction. The possibilities are as follows:
  • a biologically active polypeptide is permanently located at its targeting point, and either remains permanently active there, or its activity is modulated in some way by post- translational modification such as phosphorylation or by binding of modulators to non- catalytic regulatory sites. Dislocation from the targeting site will remove the biologically active polypeptide from a localised site of action, and may also lead to inactivation of its inherent catalytic activity.
  • a biologically active polypeptide is permanently located at its targeting point, and remains inactive there until its activity is modulated in some way by post-translational modification, such as phosphorylation or by binding of modulators to non-catalytic regulatory sites. Dislocation from the targeting site will remove the biologically active polypeptide from a localised site of action, and may also lead to activation of its inherent catalytic activity, albeit away from its original anchoring site.
  • a biologically active polypeptide is inactive in its unattached or untargeted form, and when activated (as described in "1" above), or partially activated, it redistributes within the cell and becomes attached to its targeting site, its activity being restricted to the anchoring site and possibly enhanced by interaction with the anchoring protein or some associated factor, or at some later time inhibited by the anchoring protein or an associated regulatory factor.
  • Any agent which prevents association of the biologically active polypeptide with its anchoring or targeting site will prevent it from locating to the preferred site of action, and may also prevent the biologically active polypeptide from becoming fully activated by the appropriate stimulus whilst in the untargeted state.
  • a biologically active polypeptide is active in its unattached or untargeted form, and when inactivated (as described in "1" above), or partially inactivated, it redistributes within the cell and becomes attached to its targeting site, whereby its activity is inhibited by interaction with the anchoring protein or an associated regulatory factor. Subsequent stimuli may then activate and release the biologically active polypeptide. Any agent which prevents association of the biologically active polypeptide with its anchoring or targeting site will prevent it from relocating to the anchoring position, and may also prevent the biologically active polypeptide from ever being inactivated. In addition, if the biologically active polypeptide cannot target to its anchoring site, it may not be possible subsequently to activate the biologically active polypeptide in the appropriate way in the untargeted state.
  • constructs to test may consist of selecting a particular part of the IKK or PDE to fuse to GFP, or it may involve the generation of in-frame deletions in the IKK or PDE part of the fusion. Both approaches have been widely used in molecular genetic studies.
  • the amino acid residues most important for this trait may be identified by a more detailed analysis, e.g. substituting them one by one with e.g. an alanine residue, a so called Ala-scan, which also has been used extensively in molecular genetic studies.
  • an alanine residue a so called Ala-scan
  • To identify the identity of the cellular protein partaking in the specific distribution of the IKK or PDE one may exploit the knowledge about the region of the IKK or PDE responsible for the subcellular distribution; for example, one may use the region of the IKK or PDE as bait in a genetic two hybrid screen to pull out its binding partner.
  • Several companies offer two hybrid systems, e.g. Life Technologies.
  • the knowledge about the normal distribution of the original fluorescent probe is used to establish which part or which parts of the terminal (or entire) amino-acid sequence that is important for the attachment of this fluorescent probe to subcellular structures, giving it its specific spatially distributed pattern in the cell or cells, when such a pattern has been established as the normal distribution of this fluorescent probe.
  • This may be accomplished by creating new fluorescent probes where a systematic deletion of short N- or C-terminal or internal sequences (number of DNA bases) of the original fluorescent probe are made. These new shorter variants of the of the original fluorescent probe construct are transfected into the cells of interest and then the cells are examined for spatial distribution of the new fluorescent probes as described above for the original fluorescent probe.
  • the new fluorescent probe distribution pattern is different from the original fluorescent probe distribution pattern it is evident that part of the, or the entire, targeting sequence has been deleted.
  • the DNA- or amino-acid sequence of the missing part therefore contains the structural information necessary for association of the original fluorescent probe with its intracellular binding sites.
  • Peptides for inhibition of the established normal distribution of the original fluorescent probe are designed according to the hypothesis, that the deduced targeting sequence, or sequences, in the original fluorescent probe amino-acid sequence are the important sequences for the actual spatial distribution of the original fluorescent probe in intact living cells, is tested. This is done by producing peptides of identical amino-acid sequence as the deduced targeting sequence or parts thereof and introducing them into the cytoplasm, either by microinjection or transient or permanent permeabilisation, of cells containing the original fluorescent probe and thereafter monitoring the spatial distribution of the original fluorescent probe in the cells.
  • the introduced peptides will self-associate with the anchoring sites for the original fluorescent probe and thereby disrupt the normal distribution of the original fluorescent probe.
  • the introduction of the peptides should change the original distribution pattern so that a decrease in fluorescence of 10% or more, compared to the pattern before their introduction, can be detected. This is done by observing the same cells before and after administration of the peptides.
  • 'peptide leads' When peptides that fulfil this criterion have been found they are called 'peptide leads' and will hereafter be referred to using this expression.
  • PS473 and derivatives thereof show a discrete intracellular localisation that allow establishment of assay systems valuable in the screening for compounds that modulate targeting of said probes.
  • IKK ⁇ interacts with multiple components of the IkappaB complex. Construction of the described assay systems has allowed us to screen for compounds that interact with specific or multiple targeting sites. This approach allow for development of compounds that through modulation of one (or several) of multiple targeting sites of IKK ⁇ (or other IKKs) will provoke either a partial or a complete inhibition of the NF-kappaB activation.
  • cell specific anchoring will allow design of compounds that only affect defined cell types.
  • the distribution pattern found for the original fluorescent probe is compared to the naturally occurring spatial distribution of the protein on which the original fluorescent probe is based. This may be accomplished by observing fixed primary cells separated from or still within the tissue of interest and fixed cells that contain the original fluorescent probe. Thereafter the protein is stained using ordinary immunocytochemical or immunohistochemical methods and the spatial distribution revealed by this staining procedure is compared to the spatial distribution of the original fluorescent probe. It is desirable, but not required, that a high degree of correlation between the two patterns obtained in this step can be observed.
  • the assay procedure can be chosen: 1. If the fluorescent probe normally is targeted to specific sites and stays associated with these sites during stimulation of the intracellular pathway, the assay should preferably be designed to detect dislocation of the original fluorescent probe from the targeting sites in mechanically intact or permeabilised living cells. This is an assay where the dislocation can be detected within minutes after application of an influence and the time frame for the detection and time for exposing the cells to an influence should be chosen to match this. 2.
  • the influence may need hours to produce a detectable response.
  • the actual measurement still of a change in the fluorescence or luminescence distribution pattern compared to the normal distribution pattern for the original fluorescent probe, may be made at two time points; before and after the influence has exerted any effect it may have. This is an assay where the effect of an influence may require several hours to produce a detectable response and the time frame for the detection and time for exposing the cells to an influence should be chosen to match this. 3.
  • the fluorescent probe normally redistributes between two intracellular sites upon activation of the intracellular pathway one may either want to disrupt the initial targeting or dislocate the original fluorescent probe from its initial or resting anchoring site. In this case procedure no.
  • the targeting sequence of this site should be in focus for the lead peptide generation.
  • This is an assay where the redistribution may be detected within minutes after application of an influence and the time frame for the detection and time for exposing the cells to an influence should be chosen to match this.
  • any influence applied to inhibit the targeting of the original fluorescent probe upon its redistribution may need to be added to the cells before activation of the intracellular pathway.
  • constructs are made for new fluorescent probes encoding the protein isoforms tagged with GFP. These constructs are subsequently transfected into the cells of interest. When the new fluorescent probes are expressed in the cells, some of the cells are chosen as the basis for new cell lines that can be used in the counterscreen or counterscreens.
  • Suitable probes for this purpose comprise DNA constructs encoding fusion polypeptides comprising forms of IKK ⁇ , IKK ⁇ , IKK ⁇ or NIK and GFP; PDE1 , PDE2, PDE3, PDE4, PDE5, PDE6, PDE7, PDE8 , PDE9 or PDE10 and GFP; PKA catalytic subunit and GFP.
  • the DNA constructs will encode fusion polypeptides comprising isoforms of IKK ⁇ , PDE 4, mPDE5, PKA catalytic subunit and GFP.
  • the DNA construct is selected from table 1.
  • Table 1 list of the fusion constructs of the invention by the names used herein as well as by reference to relevant SEQ ID NOs of sequences of DNA encoding the construct and full amino acid sequences
  • the cell lines established for the primary screen and the counterscreen, or counterscreens are used to establish peptide leads that more specifically dislocate the desired isoform of the protein of interest compared to other isoforms of the same protein.
  • the peptide leads are introduced into the cells as described above and the changes in spatial distribution of the original and counterscreen fluorescent probes are quantified and dose-response relationships are established for each lead peptide. Thereafter the dose-response relationships are compared.
  • a peptide lead is considered specific for the original fluorescent probe if the dose of the peptide required to dislocate at least 10% of the fluorescent probes in the counterscreen or conterscreens are at least two times higher than the dose required to dislocate 10% of the original fluorescent probe.
  • the lead peptides with the biggest dose difference when comparing the primary and the counterscreen dose-response relationships are chosen as the basis for the next step in the discovery project.
  • the primary screening assay and counterscreen or counterscreens are used to define specificity of the peptide leads by using a procedure that compares their ability to cause a dislocation, disruption of targeting or inhibition of redistribution of the original fluorescent probe in the primary screening assay to their ability to cause a dislocation, disruption of targeting or inhibition of redistribution of the new fluorescent probes in the counterscreen or counterscreens.
  • the dose of a peptide lead required to cause a quantified dislocation, disruption of targeting or inhibition of redistribution of the original fluorescent probe of at least 10% in the primary screening assay is 50% or less of the dose required to cause a quantified dislocation, disruption of targeting or inhibition of redistribution of the new fluorescent probes of at least 10% in the counterscreen or counterscreens.
  • the invention provides for a specificity index which may be constructed describing a numerical relationship, with the primary screening asay result first, of the dose required to produce half-maximal effect in the primary assay compared to the dose required to produce half-maximal effect in the counterscreen or counterscreens.
  • the peptide leads chosen for further use in the discovery project have a specificity index of 1 to 2. In another embodiment the peptide leads chosen for further use in the discovery project have a specificity index between 1 to 2 and 1 to 10.
  • the peptide leads chosen for further use in the discovery project have a specificity index between 1 to 11 and 1 to 100.
  • the peptide leads chosen for further use in the discovery project have a specificity index better than 1 to 100.
  • Lead peptides are used to create and select libraries of small organic molecules that can be useful in screening assays to find bioactive substances useful as drugs to treat the condition or disease of interest for the project.
  • the amino-acid sequence information and other structural information about the lead peptide or peptides is used to extract information useful for finding and/or defining and synthesising bioactive organic molecules that can mimic the effect of the lead peptides on the normal spatial distribution pattern of the original fluorescent probe.
  • Such compounds may be useful as drugs to treat the condition or disease of interest for the project.
  • Peptide leads selected by the discovery project are used to design and assemble compound libraries based on the structural and chemical information inherent in the lead peptides using prior chemical knowledge and computational chemistry approaches so that the compounds have a structure that give them the ability to interact with or bind to the targeting sequence of IKK ⁇ , PDE 4D X or mPDE5 thereafter testing the compound libraries at a concentration of 10 or 100 micromolar of each compound in the primary screening assay.
  • the libraries of compounds have been defined and are at hand it is time to initiate primary screening. In this procedure, cells containing the original fluorescent probe are contacted with the compounds. The compounds are all tested at just one or a few 5 concentrations, typically 10 and 100 micromolar, in a highly parallel fashion using a quantitative fluorescence redistribution assay.
  • the predetermined value is 50%. In yet another embodiment the predetermined value is 70%.
  • Primary hits may be deselected by the discovery project when they display a half- maximal potency at a dose corresponding to a concentration of more than 10 micromolar or because they display a selectivity index less than 1 to 2.
  • Primary hits may be selected by the discovery project when they display a half-maximal potency at a dose corresponding to a concentration of 10 micromolar or less or because they display a selectivity index higher than 1 to 2, the compounds hereafter also referred to as "primary lead compounds”.
  • a Structure- Activity Relationship is built by iterations of compound library composition and screening to define drug candidate leads. This step is included to further improve the possibilities of finding bioactive compounds with desirable properties for treatment of the diseases or conditions of interest to the project.
  • the primary lead compounds are here used to provide chemical structural information that can be used as the basis for composition or chemical synthesis of new, directed, compound libraries. By systematic chemical modification of part of the structure of one or more primary lead compounds new libraries are assembled. These new libraries of compounds are also investigated using the primary screening assay and counterscreen or counterscreens. Preferably, dose-response relationships are recorded for each chemical modification of the primary lead compound and compared to the primary lead compound itself. Thereby SAR is established.
  • the ones that in this step has the best combination of potency and specificity are chosen either as the basis for a new round of compound library synthesis or composition or, as the final step of the SAR building process, as compounds that will be further for actual pharmacoloical effects in assay systems and animals that are relevant to the underlying physiological and pathophysiological processes of interest to the project.
  • drug candidate leads will hereafter be referred to as "drug candidate leads”.
  • drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 1 micromolar and a selectivity index higher than 1 to 2. In one embodiment the drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 1 micromolar and a selectivity index higher than 1 to 10.
  • the drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 1 micromolar and a selectivity index higher than 1 to 100. In one embodiment the drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 0,1 micromolar and a selectivity index higher than 1 to 2.
  • the drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 0,1 micromolar and a selectivity index higher than 1 to 10.
  • the drug candidate leads have a half-maximal potency at a dose corresponding to a concentration of less than 0,1 micromolar and a selectivity index higher than 1 to 100.
  • Drug candidate leads may be further characterised in tissue based, cell based and biochemical assays to validate in vitro their efficacy and toxicity.
  • tissue based, cell based and biochemical assays to validate in vitro their efficacy and toxicity.
  • the drug candidate lead is tested in assay systems with high relevance to the underlying physiological and pathophysiological processes involved in the pathogenesis and pathophysiology of the disease or condition of interest to the project.
  • the drug candidate leads are tested for toxic effects, preferably testing for genetic effects (influence on the integrity and arrangement of DNA), metabolic effects (influence on cellular metabolic processes) and cytotoxic effects (influence on cell integrity and organelle integrity).
  • drug candidate leads chosen by the discovery project are tested in vitro for efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in hypotension, inflammatory diseases, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in vitro for efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in inflammatory airway diseases, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in vitroiot efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in inflammatory joint diseases, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in vitro lor efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in inflammatory bowel diseases, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in vitroior efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in autoimmune diseases, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • l-kappaB degradation is inhibited by a novel mechanism namely by mis-targeting and/or modulation of the redistribution of specific IKKs.
  • the presented invention does not involve direct inhibition of the IKK enzymatic activity.
  • the substance is an organic compound, the organic compound being a weak acid in that it is a neutral molecule that can reversibly dissociate into an anion (a negatively charged molecule) and a proton (a hydrogen ion).
  • the organic compound is a weak base in that it is a neutral molecule that can form a cation (a positively charged molecule) by combining with a proton.
  • the functional groups of the targeting sequences include functional groups selected from the group consisting of: methyl-, isopropyl-, isobutyl-, hydroxyl-, thiol-, benzyl-, benzyloyl-, methylindolyl-, methylimidazolyl-, amine-, imine-, carboxyl- and acetamide-groups as parts of amino acids in the targeting sequences.
  • the organic compound is a compound having one or more chemical domains capable of interacting with one or more functional groups of the targeting sequence of the native anchoring site of the cyclic nucleotide phosphodiesterase or 1-kappaB kinase.
  • the organic compound is a compound having at least two chemical domains capable of interacting with at least two functional groups of the targeting sequence of the native anchoring site for the cyclic nucleotide phosphodiesterase or l-kappaB kinase.
  • the organic compound is a compound having at least three chemical domains capable of interacting with at least three functional groups of the targeting sequence of the native anchoring site for the cyclic nucleotide phosphodiesterase or l-kappaB kinase.
  • the organic compound is, in one aspect of the invention, a compound having at least two chemical domains capable of interacting with at least two functional groups of the targeting sequence of the cyclic nucleotide phosphodiesterase.
  • the organic compound is a compound having at least three chemical domains capable of interacting with at least three functional groups of the targeting sequence of the cyclic nucleotide phosphodiesterase.
  • the drug candidate leads are tested in vivo for toxic and unwanted effects in animals such as mice and rats.
  • the drug candidate leads are also tested for efficacy in animals that have a disease or condition with high degree of relevance to the disease or condition of interest to the project.
  • the drug candidate leads may also be tested for efficacy in animals which have been treated in a way that make them experience a disease or condition with high degree of relevance to the disease or condition of interest to the project.
  • Drug candidate leads that display efficacy in one or more of such animal tests and that does not display any apparent toxicity at a dosage level, preferably 2 -10 times higher than the level that gives satisfactory efficacy are chosen to be the final drug candidates that should be considered for further animal testing and initial testing in humans.
  • drug candidate leads chosen by the discovery project are tested in w ' tro for efficacy, in assay systems with high degree of relevance to the underlying physiological and pathophysiological processes involved in depression, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in w ' tro for efficacy, in assay systems with high degree of relevance to the underlying physiological and pathophysiological processes involved in jet-lag, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested in vitro for efficacy, in assay systems with high degree of relevance to the underlying physiological and patophysiological processes involved in erectile dysfunction, and for toxicity, preferably testing for genetic, metabolic and cytotoxic effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity are chosen to be the candidates that will enter testing in animals.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in hypotension, and for toxicity and unwanted side effects, after which the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in inflammatory diseases, and for toxicity and unwanted side effects, after which the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in hypertension, and for toxicity and unwanted side effects, after which the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in jet-lag and circadian rhythm resetting, and for toxicity and unwanted side effects, after which the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in erectile dysfunction, and for toxicity and unwanted side effects, after which the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in inflammatory airway diseases, and for toxicity and unwanted side effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in inflammatory joint diseases, and for toxicity and unwanted side effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in inflammatory bowel diseases, and for toxicity and unwanted side effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in autoimmune diseases, and for toxicity and unwanted side effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • drug candidate leads chosen by the discovery project are tested for efficacy, in healthy animals and animals with a condition with high degree of relevance to the underlying physiological and pathophysiological processes involved in depression, and for toxicity and unwanted side effects, whereafter the drug candidate leads that display the best efficacy and the least, or no, indications of toxicity or unwanted side effects are chosen to be the candidates, called discovery project leads, that will enter further testing in animals and testing in humans.
  • the administration route of any of the compounds of the invention may be of any suitable route which leads to a concentration in the blood corresponding to a therapeutic concentration by the oral route, the parenteral route, the cutaneous route, the nasal route, the rectal route, the vaginal route and the ocular route. It should be clear to a person skilled in the art that the administration route is dependant on the compound in question, particularly, the choice of administration route depends on the physico- chemical properties of the compound together with the age and weight of the patient and on the particular disease and the severity of the same.
  • the compounds of the invention may be contained in any appropriate amount in a pharmaceutical composition, and are generally contained in an amount of about 1-95% by weight of the total weight of the composition.
  • the composition may be in form of, e.g., tablets, capsules, pills, powders, granulates, suspensions, emulsions, solutions, gels including hydrogels, pastes, ointments, creams, plasters, drenches, delivery devices, suppositories, enemas, injectables, implants, sprays, aerosols and in other suitable form.
  • the pharmaceutical compositions may be formulated according to conventional pharmaceutical practice, see, e.g., "Remington's Pharmaceutical Sciences” and "Encyclopedia of Pharmaceutical Technology”.
  • compositions according to the present invention may be formulated to release the active compound substantially immediately upon administration or at any 5 substantially predetermined time or time period after administration.
  • the latter type of compositions are generally known as controlled release formulations.
  • Controlled release formulations may also be denoted “sustained release”, “prolonged release”, “programmed release”, “time release”, “rate-controlled” and/or “targeted release” formulations. 10
  • every pharmaceutical composition is an actual drug delivery system, since upon administration it presents the active drug substance to the body of the organism.
  • the compounds of the invention are preferably administered in an amount of about 0.1-
  • the compound in question may be administered orally in the form of tablets, cap-sules, elixirs or syrups, or rectally in the form of suppositories.
  • Parenteral administration of the compounds of the invention is suitably performed in the form of saline solutions of the compounds or with the compound incorporated into liposomes. In cases where the
  • compositions adapted for oral administration for systemic use the dosage is normally 1 mg to 1 g per dose administered 1 -4 times daily for 1 week, 12 months or even lifelong depending on the disease to be treated.
  • compositions adapted for rectal a somewhat higher amount of compound is usually preferred, i.e. from approximately 1 mg to 100 mg per kg body weight per day.
  • parenteral administration For parenteral administration a dose of about 0.1 mg to about 50 mg per kg body weight per day is convenient. For intravenous administration a dose
  • a dose of about 0.1 mg to about 20 mg per kg body weight per day is usually preferable.
  • a solution in an aqueous medium of 0.5-2% or more of the active ingredients may be employed. Cutaneous administration.
  • Example 1 Probes for detection of PDE4D dislocation.
  • PDE4D variants fused to a GFP are specific PDE4D variants fused to a GFP.
  • PDE4D splice variants are known: PDE4D1 , PDE4D2, PDE4D3, PDE4D4 and PDE4D5. These all share C- terminal sequences but differ in their N-termini.
  • PDE4D1 and PDE4D2 subtypes are found only in the cytosolic fraction, whereas PDE4D3, PDE4D4 and PDE4D5 subtypes appear to associate with some form of cellular structure(s).
  • Targetting sequences of PDE4Ds are presently believed to be located in their N-terminal domain(s).
  • PDE4D1 and PDE4D2 have much shorter N-terminal domains than PDE4d3, PDE4D4 and PDE4D5.
  • the fusions are made between the C-terminus of the PDE4D species and the N-terminal of the GFP.
  • PDE4D-GFP fusions PDE4D sequences are amplified using PCR according to standard protocols with specific top-primers as listed below, and the common bottom-primer listed below.
  • the PCR products are digested with restriction enzymes Hind3 and EcoRI , and ligated into pEGFP-N1 (Clontech, Palo Alto; GenBank Accession number U55762) digested with Hind3 and EcoRI .
  • PDE4D- EGFP fusions under the control of a CMV promoter (SEQ ID NOs: 5 and 6 (PDE4D5- EGFP); SEQ ID NOs: 3 and 4 (PDE4D4-EGFP); SEQ ID NOs: 1 and 2 (PDE4D3- EGFP)).
  • Top primers all include specific sequences following the ATG, a Kozak sequence, and a cloning site (Hind3).
  • the bottom primer includes the common C-terminal sequence minus the stop codon, an EcoRI cloning site, and an extra nucleotide to preserve the reading frame in EGFP-N1.
  • the resulting plasmids are transfected into a suitable cell line, e.g. MVLEC.
  • a suitable cell line e.g. MVLEC.
  • the subcellular distribution of the probes is examined carefully by fluorescence microscopy, both under resting conditions, and upon elevation of cAMP, e.g. by activation of adenylate cyclase with forskolin, which may or may not have an effect on the normal distribution.
  • PDE5 variants fused to a GFP.
  • the first fusion is made between the C-terminus of the PDE5 species and the N-terminal of the GFP.
  • PDE5 sequences are amplified using
  • PCR according to standard protocols with the specific primers listed below.
  • the PCR product is digested with restriction enzymes EcoRI and Acc65l, and ligated into pEGFP- N1 (Clontech, Palo Alto; GenBank Accession number U55762) digested with EcoRI and Acc65l. This produces a PDE5-EGFP fusion under the control of a CMV promoter (SEQ ID NOs: 7 and 8).
  • the top primer includes specific sequences following the ATG, a Kozak sequence, and a cloning site (EcoRI ).
  • the bottom primer includes specific C-terminal sequences minus the stop codon, an Acc65l cloning site, and two extra nucleotides to preserve the reading frame in EGFP-N1.
  • PDE5-bottom 5'-GTGGTACCCAGTTCCGCTTGGCC
  • the resulting plasmids are transfected into a suitable cell line, e.g. MVLEC.
  • MVLEC a suitable cell line
  • the subcellular distribution of the probes is examined carefully by fluorescence microscopy, both under resting conditions, and upon elevation of cGMP, e.g. by activation of cyclase with NO or nitroprusside, which may or may not have an effect on the normal distribution.
  • EXAMPLE 3 Probes for detection of IKK redistribution.
  • IKK ⁇ redistribution by mis-targeting provoke an inhibition of cytokine- induced NF-kappaB activation.
  • specific mis- tageting of IKK ⁇ inhibits cytokine-induced NF-kappaB activation.
  • Dislocation of endogenous IKK ⁇ from its anchoring sites is achieved by expression of a C-terminal part of IKK ⁇ (PS473).
  • PS473 probe which is a GFP fusion, allows a simultaneous monitoring of its localisation and redistribution.
  • IKK subunit variants fused to a GFP.
  • IKK ⁇ GenBank Acc.no. AF009225
  • IKK ⁇ GenBank Ace. No. AF031416
  • IKK ⁇ GenBank Ace. No. AF074382
  • NIK GeneBank Ace. No. NM003954
  • IKAP complex during activation, and so becomes the first choice for a probe to detect redistribution.
  • IKK ⁇ sequences are amplified using PCR according to standard protocols with the specific primers listed below.
  • the PCR product is digested with restriction enzymes Hind3 and Acc65l, and ligated into pEGFP-N1 (Clontech, Palo Alto; GenBank Accession number U55762) digested with Hind3 and Acc65l.
  • the top primer includes specific sequences following the ATG and a cloning site (Hind3).
  • the bottom primer includes specific C-terminal sequences minus the stop codon, an Acc65l cloning site, and two extra nucleotides to preserve the reading frame in EGFP- N1.
  • IKK ⁇ -top 5'-GTAAGCTTACATGAGCTGGTCACCTTCCCTG-3'
  • IKK ⁇ -bottom 5'-GTGGTACCCATG AGGCCTGCTCCAG-3'
  • the resulting plasmids are transfected into a suitable cell line.
  • the subcellular distribution of the probes is examined carefully by fluorescence microscopy, both under resting conditions, and upon activation, e.g. with TNF ⁇ .
  • Plasmid PS377 contains an NFkappaBp65-EGFP fusion.
  • GenBank accession number of the p65 subunit of NFkappaB is M62399. It is constructed by performing PCR on human cDNA (from Clontech) with specific primers p65-top and p65-bottom. The resulting ca. 1.7 kb PCR product is cut with restriction enzymes Xho1 and Hind3 and cloned into pEGFP-N1 (Clontech) cut with Xho1 and Hind3. This produces an NFkappaB-EGFP fusion (SEQ ID NOs: 11 and 12) under the control of the CMV promoter.
  • Plasmid PS397 contains a selectable NFkappaB reporter construct. It is constructed through ligation of two BamH1 -Not1 fragments: A 2.4 kb fragment from pNFkappaB-Luc (from Clontech,), which contains a luciferase gene and NFkappaB response elements, and a 2.8 kb BamH1-Not1 fragment from pZeoSV (from Invitrogen), which contains essential plasmid elements and a zeocin selective marker for use in E.coli and mammalian cells.
  • Plasmid PS410 contains an EGFP-IKK ⁇ fusion.
  • GenBank accession number of the beta subunit of IkappaB kinase is AF031416. It is constructed by performing PCR on human cDNA (from Clontech) with specific primers IKK ⁇ -top and IKK ⁇ -stop. The resulting 2.2 kb PCR product is cut with restriction enzymes Hind3 and Acc65l and cloned into pEGFP-Cl (Clontech) cut with Hind3 and Acc65l. This produces an EGFP- IKK ⁇ fusion (SEQ ID NOs: 13 and 14) under the control of the CMV promoter.
  • IKK ⁇ -top 5'-GTAAGCTTACATGAGCTGGTCACCTTCCCTG-3'
  • IKK ⁇ -stop 5'-GTGGTACCTCATGAGGCCTGCTCCAG-3'
  • Plasmid PS472 contains a full length IKK ⁇ under the control of the CMV promoter. It is constructed by cutting PS410 with restriction enzymes Nhe1 and Hind3, which flank EGFP. This excises EGFP sequences from the plasmid, while placing IKK ⁇ immediately downstream of the CMV promoter. The protruding ends generated by the enzymes are then made blunt using Klenow polymerase according to standard protocol, and the plasmid is recircularized with DNA ligase.
  • PS473 contains EGFP fused to the C-terminal part of IKK ⁇ .
  • This part of IKK ⁇ contains a putative leucine zipper region, but is without catalytic activity as this function resides in the N-terminal part of IKK ⁇ . It is constructed by performing PCR on PS410 with primers IKK ⁇ -LZ-top and IKK ⁇ -stop.
  • IKK ⁇ -LZ-top contains a Hind3 site and specific IKK ⁇ sequence from amino acid position 455 in the predicted amino acid sequence. This is almost immediately upstream of the first leucine of the predicted leucine zipper, which is at position 458.
  • the resulting 0.9 kb PCR product is cut with restriction enzymes Hind3 and Acc65l and cloned into pEGFP-C1 (Clontech) cut with Hind3 and Acc65l.
  • Plasmid PS474 contains the IKK ⁇ C-terminal part under the control of the CMV promoter. It is constructed by cutting PS473 with restriction enzymes Age1 and BspE1 , which flank EGFP. This excises EGFP sequences from the plasmid, while placing IKK ⁇ sequences immediately downstream of the CMV promoter. As Age1 and BspE1 produce compatible ends, the plasmid is simply recircularized with DNA ligase. The ATG methionine codon at position 455 in the predicted amino acid sequence of IKK ⁇ , may serve as initiation codon in this construct.
  • CHO Chinese hamster ovary cells
  • HEK293 Human epithelial kidney cells
  • HeLa Human epithelial adenocarcinoma cells
  • Stable transfectants were selected using 1000 ⁇ g Zeocin/ml (Invitrogen) or 500 ⁇ g G418/ml (Neo marker) in the growth medium [DMEM (HEK293 and HeLa) or HAM F12 (CHO) with 1000 mg glucose/l, 10 % fetal bovine serum (FBS), 100 ⁇ g penicillin-streptomycin mixture ml "1 , 2 mM L-glutamine purchased from Life Technologies Inc., Gaithersburg, MD, USA).
  • DMEM HEK293 and HeLa
  • FBS fetal bovine serum
  • penicillin-streptomycin mixture ml "1 , 2 mM L-glutamine purchased from Life Technologies Inc., Gaithersburg, MD, USA.
  • cells were allowed to adhere to Lab-Tek chambered coverglasses (Nalge Nunc Int., Naperville, IL, USA) for at least 24 hours and cultured to about 80% confluence. Prior to experiments, the cells were cultured over night without selection pressure in DMEM or HAM F-12 medium with glutamax (Life Technologies), 100 ⁇ g penicillin-streptomycin mixture ml "1 and 0.3 % FBS. This medium has low autofluorescence enabling fluorescence microscopy of cells straight from the incubator.
  • a sequence of images with a time separation of 10 sec is acquired. At each time point the sequence consists of one NF-kappaB-GFP image and one image of the Hoechst stained nucleus.
  • the image sequence is corrected for dark current by performing a pixel-by-pixel subtraction of a dark image (an image taken under the same conditions as the actual image, except the camera shutter is not allowed to open).
  • the image sequence is corrected for non-uniformity of the illumination by performing a pixel-by-pixel ratio with a flat field correction image (an image taken under the same conditions as the actual image of a uniformly fluorescent specimen).
  • a flat field correction image an image taken under the same conditions as the actual image of a uniformly fluorescent specimen.
  • the Hoechst image is used to mask the nucleus.
  • the full length IKK ⁇ probe (PS410) show an even distribution throughout the cytoplasm when expressed in CHO (Fig. 2) and HEK293 cells.
  • PS473 show a similar localisation after its expression (Fig. 3A).
  • the probe has sensitised the cells to stimuli that induce apoptosis. It is thus observed that the PS473 expressing cells upon 2 hrs of serum starvation undergo apoptosis, in comparison non-tranfected cells or PS410 expressing cells did show no sign on apoptosis after similar treatment.
  • the induction of apoptosis could be visualised as a change in the localisation of the PS473 probe from an even distribution throughout the cytoplasm to a discrete punctate localisation (Fig. 3B).
  • CHO cells expressing PS377 for monitoring NFkappaB redistribution in live cells A) Before stimulation and B) 10 minutes after stimulation with IL-1 (10 ng/ml).
  • the full length IKK ⁇ probe (PS410) show an even distribution throughout the cytoplasm when expressed in CHO cells.
  • PS473 expressed in CHO cells show an even distribution throughout the cytoplasm.
  • B The distributaion change when cells undergo appoptosis as observed after two hours of serum starvation.
  • PS473 inhibits IL-1 (0.5 ng/ml) induced redistribution of NF-kappaB in CHO cells.
  • FIG. 5 Expression of PS473 inhibits IL-1 (0.5 ng/ml) and TNF- ⁇ (0.5 ng/ml) induced NF-kappaB regulated transcription in HEK293 cells.
  • IKAP is a scaffold protein of the IkB kinase complex . Nature 395: 292-296. Disanto, M.E., Glaser, K.B., Heaslip, R.J. (1995) Cell. Sig. 7:827-835. Drewett, J.G. and Garbers, D.L. (1994) Endocrine Reviews, 15: 135-162. Entman, M.L, Smith, C.W. (1994) Cardiovasc. Res. 28:1301-1311 Essayan, D.M., Kageysobotka, A., Lichenstein, L.M., Huang, S.K.(1997) J. Pharm. Exp.
  • NF-kappaB precursor p105 and the proto-oncogene product bcl-3 are l-kappaB molecules and control nuclear translocation of NF-kappaB.
  • the bcl-3 proto-oncogene encodes a nuclear l-kappaB-like molecule that preferentially interacts with NF-kappaB p50 and p52 ina phosphorylation-dpendent manner.
  • Mol. Cell. Biol., 13:3557-3566 O'Connell, J.C., et al., (1996) Biochem. J. 318:255-262. O'Neill, L.A., Kaltschmidt, C. (1997) NF-kappaB: a crucial transcription factor for glial and neuronal cell function.
  • IKK-g is an essential regulatory subunit of the IkB kinase complex. Nature 395: 297-300. Schulze-Osthoff, K., Ferrari, D., Riehemann, K., Wesselborg, S. (1997) Regulation of

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Abstract

La présente invention concerne un mécanisme d'action, c'est à dire de modulation de l'efficacité spécifique de kinases I-kappa ou de phosphodiestérases (PDE) de nucléotides cycliques qui peuvent couper un GMPc ou un AMPc. Le mode d'action préféré s'effectue par dislocation, interruption du ciblage ou interférence avec redistribution d'isoformes spécifiques de variants d'épissure de PDE4, PDE5, ou de kinases I-kappa de leurs sites d'ancrage dans des cellules, modulant ainsi leur efficacité spécifique, mais pas leur capacité enzymatique. Les entités chimiques peuvent être utiles dans la prévention ou le traitement chez l'animal, de préférence chez l'homme, dans le besoin, condition défavorable qui peut être réduite ou supprimée par modulation de l'efficacité spécifique de PDE4, PDE5, ou de kinases I-kappa.
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US8637528B2 (en) 2007-03-27 2014-01-28 Omeros Corporation Use of PDE7 inhibitors for the treatment of movement disorders
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US11446398B2 (en) 2016-04-11 2022-09-20 Obsidian Therapeutics, Inc. Regulated biocircuit systems
WO2018231759A1 (fr) * 2017-06-12 2018-12-20 Obsidian Therapeutics, Inc. Compositions de pde5 et méthodes d'immunothérapie
WO2018237323A1 (fr) * 2017-06-23 2018-12-27 The Board Of Trustees Of The Leland Stanford Junior University Domaines de déstabilisation de pde5a
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