EP3063301A4 - Méthodes de séquençage génomique de nouvelle génération - Google Patents

Méthodes de séquençage génomique de nouvelle génération Download PDF

Info

Publication number: EP3063301A4
Authority: EP; European Patent Office
Prior art keywords: next generation; sequencing methods; genomic sequencing; generation genomic; methods
Prior art date: 2013-10-29
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Withdrawn

Application number

EP14856946.0A

Other languages

German (de)

English (en)

Other versions

EP3063301A1 (fr

Inventor

Luke T. Daum

Gerald W. Fischer

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

Longhorn Vaccines and Diagnostics LLC

Original Assignee

Longhorn Vaccines and Diagnostics LLC

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

2013-10-29

Filing date

2014-10-29

Publication date

2017-07-19

2014-10-29 Application filed by Longhorn Vaccines and Diagnostics LLC filed Critical Longhorn Vaccines and Diagnostics LLC

2016-09-07 Publication of EP3063301A1 publication Critical patent/EP3063301A1/fr

2017-07-19 Publication of EP3063301A4 publication Critical patent/EP3063301A4/fr

Status Withdrawn legal-status Critical Current

Links

238000012163 sequencing technique Methods 0.000 title 1

Classifications

- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
- C12Q1/701—Specific hybridization probes
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa

Landscapes

Chemical & Material Sciences (AREA)
Life Sciences & Earth Sciences (AREA)
Organic Chemistry (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Health & Medical Sciences (AREA)
Zoology (AREA)
Analytical Chemistry (AREA)
Wood Science & Technology (AREA)
Engineering & Computer Science (AREA)
Immunology (AREA)
Biochemistry (AREA)
Microbiology (AREA)
Molecular Biology (AREA)
Biotechnology (AREA)
Biophysics (AREA)
Physics & Mathematics (AREA)
Bioinformatics & Cheminformatics (AREA)
General Engineering & Computer Science (AREA)
General Health & Medical Sciences (AREA)
Genetics & Genomics (AREA)
Tropical Medicine & Parasitology (AREA)
Virology (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

EP14856946.0A 2013-10-29 2014-10-29 Méthodes de séquençage génomique de nouvelle génération Withdrawn EP3063301A4 (fr)

Applications Claiming Priority (2)

Application Number	Priority Date	Filing Date	Title
US201361897015P	2013-10-29	2013-10-29
PCT/US2014/062889 WO2015066174A1 (fr)	2013-10-29	2014-10-29	Méthodes de séquençage génomique de nouvelle génération

Publications (2)

Publication Number	Publication Date
EP3063301A1 EP3063301A1 (fr)	2016-09-07
EP3063301A4 true EP3063301A4 (fr)	2017-07-19

Family

ID=53005068

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP14856946.0A Withdrawn EP3063301A4 (fr)	2013-10-29	2014-10-29	Méthodes de séquençage génomique de nouvelle génération

Country Status (5)

Country	Link
EP (1)	EP3063301A4 (fr)
CN (1)	CN106170560A (fr)
AU (1)	AU2014342414B2 (fr)
CA (1)	CA2929108A1 (fr)
WO (1)	WO2015066174A1 (fr)

Families Citing this family (30)

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US11041216B2 (en)	2007-10-01	2021-06-22	Longhorn Vaccines And Diagnostics, Llc	Compositions and methods for detecting and quantifying nucleic acid sequences in blood samples
SG11201600853UA (en)	2013-08-05	2016-03-30	Twist Bioscience Corp	De novo synthesized gene libraries
US9981239B2 (en)	2015-04-21	2018-05-29	Twist Bioscience Corporation	Devices and methods for oligonucleic acid library synthesis
EP3350314A4 (fr)	2015-09-18	2019-02-06	Twist Bioscience Corporation	Banques de variants d'acides oligonucléiques et synthèse de ceux-ci
KR102794025B1 (ko)	2015-09-22	2025-04-09	트위스트 바이오사이언스 코포레이션	핵산 합성을 위한 가요성 기판
WO2017091809A1 (fr) *	2015-11-25	2017-06-01	Longhorn Vaccines And Diagnostics, Llc	Compositions et procédés de détection et de quantification de séquences d'acides nucléiques dans des échantillons sanguins
CN105950726A (zh) *	2016-05-16	2016-09-21	杭州市疾病预防控制中心	结核分枝杆菌吡嗪酰胺分子药敏的检测方法
EP3500672A4 (fr)	2016-08-22	2020-05-20	Twist Bioscience Corporation	Banques d'acides nucléiques synthétisés de novo
US10417457B2 (en)	2016-09-21	2019-09-17	Twist Bioscience Corporation	Nucleic acid based data storage
IL266681B2 (en)	2016-11-18	2025-01-01	Twist Bioscience Corp	Polynucleotide libraries with controlled stoichiometry and their synthesis
EP4556433A3 (fr)	2017-02-22	2025-08-06	Twist Bioscience Corporation	Stockage de données à base d'acide nucléique
WO2018170169A1 (fr)	2017-03-15	2018-09-20	Twist Bioscience Corporation	Banques de variants de la synapse immunologique et leur synthèse
WO2018231872A1 (fr)	2017-06-12	2018-12-20	Twist Bioscience Corporation	Méthodes d'assemblage d'acides nucléiques sans joint
WO2018231864A1 (fr)	2017-06-12	2018-12-20	Twist Bioscience Corporation	Méthodes d'assemblage d'acides nucléiques continus
US11407837B2 (en)	2017-09-11	2022-08-09	Twist Bioscience Corporation	GPCR binding proteins and synthesis thereof
US10368502B2 (en)	2017-09-25	2019-08-06	Multiple Energy Technologies Llc	Bioceramic and carbon-based hydroponic systems, methods and devices
CN111565834B (zh)	2017-10-20	2022-08-26	特韦斯特生物科学公司	用于多核苷酸合成的加热的纳米孔
KR102804057B1 (ko)	2018-01-04	2025-05-07	트위스트 바이오사이언스 코포레이션	Dna 기반 디지털 정보 저장
CA3096508A1 (fr) *	2018-04-20	2019-10-24	Longhorn Vaccines And Diagnostics, Llc	Methodes rapides pour la detection d'une resistance microbienne
CA3100739A1 (fr)	2018-05-18	2019-11-21	Twist Bioscience Corporation	Polynucleotides, reactifs, et procedes d'hybridation d'acides nucleiques
WO2020139871A1 (fr)	2018-12-26	2020-07-02	Twist Bioscience Corporation	Synthèse de novo polynucléotidique hautement précise
CN113766930B (zh)	2019-02-26	2025-07-22	特韦斯特生物科学公司	Glp1受体的变异核酸文库
JP2022522668A (ja)	2019-02-26	2022-04-20	ツイストバイオサイエンスコーポレーション	抗体を最適化するための変異体核酸ライブラリ
US11332738B2 (en)	2019-06-21	2022-05-17	Twist Bioscience Corporation	Barcode-based nucleic acid sequence assembly
JP2022548783A (ja)	2019-09-23	2022-11-21	ツイストバイオサイエンスコーポレーション	単一ドメイン抗体のバリアント核酸ライブラリー
EP4034566A4 (fr)	2019-09-23	2024-01-24	Twist Bioscience Corporation	Banques d'acides nucléiques variants pour crth2
CN112779343A (zh) *	2019-11-07	2021-05-11	杭州迪安医学检验中心有限公司	一种病原微生物药敏检测方法
BR112022011235A2 (pt)	2019-12-09	2022-12-13	Twist Bioscience Corp	Bibliotecas de variantes de ácido nucleico para receptores de adenosina
CN112410406A (zh) *	2020-11-23	2021-02-26	深圳基因家科技有限公司	一种确定文库扩增循环数的方法
CN121263535A (zh) *	2023-06-05	2026-01-02	新泽西鲁特格斯州立大学	用于检测结核分枝杆菌中的吡嗪酰胺耐药突变的方法和系统

Citations (10)

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Publication number	Priority date	Publication date	Assignee	Title
US5550040A (en) *	1993-06-23	1996-08-27	Hoffman-La Roche Inc.	Method, reagents and kits for the detection of Neisseria gonorrhoeae
WO2003080870A1 (fr) *	2002-03-20	2003-10-02	Handylab	Amorces et sondes polynucleotidiques pour une detection rapide de streptocoque du groupe b (sgb)
WO2005001128A2 (fr) *	2003-04-11	2005-01-06	University Of Florida Research Foundation, Inc.	Materiaux et procedes de production de bibliotheques d'adn, detection et identification de micro-organismes
US20090233292A1 (en) *	2007-11-30	2009-09-17	Daniele Podini	Method and kit for identification of genetic polymorphisms
US20110281754A1 (en) *	2006-09-12	2011-11-17	Longhorn Vaccines & Diagnostics, Llc	Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
CN102250924A (zh) *	2010-05-17	2011-11-23	中国疾病预防控制中心病毒病预防控制所	盖塔病毒全基因组序列、扩增方法及引物
US20120034685A1 (en) *	2010-08-06	2012-02-09	Tandem Diagnostics, Inc.	Assay systems for determination of source contribution in a sample
WO2012037531A1 (fr) *	2010-09-16	2012-03-22	Gen-Probe Incorporated	Sondes de capture immobilisables par l'intermédiaire d'une queue nucléotidique l
WO2013022961A1 (fr) *	2011-08-08	2013-02-14	3The Broad Institute	Compositions et procédés pour la co-amplification de sous-séquences d'une séquence de fragment d'acide nucléique
WO2013169998A1 (fr) *	2012-05-09	2013-11-14	Longhorn Vaccines And Diagnostics, Llc	Séquençage génomique ion torrent™

Family Cites Families (1)

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Publication number	Priority date	Publication date	Assignee	Title
US20090215050A1 (en) *	2008-02-22	2009-08-27	Robert Delmar Jenison	Systems and methods for point-of-care amplification and detection of polynucleotides

2014
- 2014-10-29 CN CN201480071698.4A patent/CN106170560A/zh active Pending
- 2014-10-29 AU AU2014342414A patent/AU2014342414B2/en active Active
- 2014-10-29 WO PCT/US2014/062889 patent/WO2015066174A1/fr not_active Ceased
- 2014-10-29 EP EP14856946.0A patent/EP3063301A4/fr not_active Withdrawn
- 2014-10-29 CA CA2929108A patent/CA2929108A1/fr not_active Abandoned

Patent Citations (10)

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Publication number	Priority date	Publication date	Assignee	Title
US5550040A (en) *	1993-06-23	1996-08-27	Hoffman-La Roche Inc.	Method, reagents and kits for the detection of Neisseria gonorrhoeae
WO2003080870A1 (fr) *	2002-03-20	2003-10-02	Handylab	Amorces et sondes polynucleotidiques pour une detection rapide de streptocoque du groupe b (sgb)
WO2005001128A2 (fr) *	2003-04-11	2005-01-06	University Of Florida Research Foundation, Inc.	Materiaux et procedes de production de bibliotheques d'adn, detection et identification de micro-organismes
US20110281754A1 (en) *	2006-09-12	2011-11-17	Longhorn Vaccines & Diagnostics, Llc	Compositions and methods for detecting, identifying and quantitating mycobacterial-specific nucleic acids
US20090233292A1 (en) *	2007-11-30	2009-09-17	Daniele Podini	Method and kit for identification of genetic polymorphisms
CN102250924A (zh) *	2010-05-17	2011-11-23	中国疾病预防控制中心病毒病预防控制所	盖塔病毒全基因组序列、扩增方法及引物
US20120034685A1 (en) *	2010-08-06	2012-02-09	Tandem Diagnostics, Inc.	Assay systems for determination of source contribution in a sample
WO2012037531A1 (fr) *	2010-09-16	2012-03-22	Gen-Probe Incorporated	Sondes de capture immobilisables par l'intermédiaire d'une queue nucléotidique l
WO2013022961A1 (fr) *	2011-08-08	2013-02-14	3The Broad Institute	Compositions et procédés pour la co-amplification de sous-séquences d'une séquence de fragment d'acide nucléique
WO2013169998A1 (fr) *	2012-05-09	2013-11-14	Longhorn Vaccines And Diagnostics, Llc	Séquençage génomique ion torrent™

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GRABENSTEINER ET AL: "Development of a multiplex RT-PCR for the simultaneous detection of three viruses of the honeybee (Apis mellifera L.): Acute bee paralysis virus, Black queen cell virus and Sacbrood virus", JOURNAL OF INVERTEBRATE PATHO, SAN DIEGO, CA, US, vol. 94, no. 3, 14 February 2007 (2007-02-14), pages 222 - 225, XP005887833, ISSN: 0022-2011, DOI: 10.1016/J.JIP.2006.11.006 *
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MELLMANN A ET AL: "Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology", PLOS ONE, vol. 6, no. 7, 20 July 2011 (2011-07-20), pages e22751, XP055199494, DOI: 10.1371/journal.pone.0022751 *
See also references of WO2015066174A1 *

Also Published As

Publication number	Publication date
AU2014342414B2 (en)	2017-06-29
CA2929108A1 (fr)	2015-05-07
AU2014342414A1 (en)	2016-05-19
WO2015066174A1 (fr)	2015-05-07
CN106170560A (zh)	2016-11-30
EP3063301A1 (fr)	2016-09-07

Legal Events

Date	Code	Title	Description
2016-08-05	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2016-09-07	17P	Request for examination filed	Effective date: 20160428
2016-09-07	AK	Designated contracting states	Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
2016-09-07	AX	Request for extension of the european patent	Extension state: BA ME
2017-02-01	DAX	Request for extension of the european patent (deleted)
2017-07-19	A4	Supplementary search report drawn up and despatched	Effective date: 20170619
2017-07-19	RIC1	Information provided on ipc code assigned before grant	Ipc: C12Q 1/70 20060101ALI20170609BHEP Ipc: C12Q 1/68 20060101AFI20170609BHEP
2018-04-18	17Q	First examination report despatched	Effective date: 20180316
2020-10-09	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN
2020-11-11	18D	Application deemed to be withdrawn	Effective date: 20200603

Publication	Publication Date	Title
EP3063301A4 (fr)	2017-07-19	Méthodes de séquençage génomique de nouvelle génération
EP3965111B8 (fr)	2025-06-11	Méthodes d'analyse génomique
PT3083958T (pt)	2019-06-27	Métodos de integração genómica
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EP3060161A4 (fr)	2017-08-30	Brosse à dents
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EP3045222A4 (fr)	2017-03-22	Réacteur
EP3015164A4 (fr)	2017-03-22	Réacteur
GB201300957D0 (en)	2013-03-06	Sequencing method
EP3065728A4 (fr)	2017-06-07	Nouvelles méthodes
EP3018750A4 (fr)	2017-03-22	Pile
EP3085880A4 (fr)	2017-08-23	Outil entraîné par impact
EP3088520A4 (fr)	2017-07-26	ß-FRUCTOFURANOSIDASE AMÉLIORÉE
EP3012948A4 (fr)	2017-02-22	Générateur
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AU2014220484B2 (en)	2020-01-30	Methods
EP3068226A4 (fr)	2017-05-17	Nouveaux procédés
AU2013904184A0 (en)	2013-11-14	Spacing means