IN2014MU01682A - - Google Patents

Download PDF

Info

Publication number
IN2014MU01682A
IN2014MU01682A IN1682MU2014A IN2014MU01682A IN 2014MU01682 A IN2014MU01682 A IN 2014MU01682A IN 1682MU2014 A IN1682MU2014 A IN 1682MU2014A IN 2014MU01682 A IN2014MU01682 A IN 2014MU01682A
Authority
IN
India
Prior art keywords
nucleic acid
acid sequence
index
subsequence
data
Prior art date
Application number
Other languages
English (en)
Inventor
Sterling Thomas
Nathan Dellinger
Original Assignee
Noblis Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Noblis Inc filed Critical Noblis Inc
Publication of IN2014MU01682A publication Critical patent/IN2014MU01682A/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/22—Indexing; Data structures therefor; Storage structures
    • G06F16/2228—Indexing structures
    • G06F16/2255—Hash tables
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Software Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
IN1682MU2014 2013-05-29 2014-05-20 IN2014MU01682A (fr)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US13/904,738 US10191929B2 (en) 2013-05-29 2013-05-29 Systems and methods for SNP analysis and genome sequencing

Publications (1)

Publication Number Publication Date
IN2014MU01682A true IN2014MU01682A (fr) 2015-09-04

Family

ID=50884687

Family Applications (1)

Application Number Title Priority Date Filing Date
IN1682MU2014 IN2014MU01682A (fr) 2013-05-29 2014-05-20

Country Status (5)

Country Link
US (3) US10191929B2 (fr)
EP (1) EP2808814A3 (fr)
CN (1) CN104217134A (fr)
IN (1) IN2014MU01682A (fr)
SG (1) SG10201402714UA (fr)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10262107B1 (en) * 2013-03-15 2019-04-16 Bao Tran Pharmacogenetic drug interaction management system
US10191929B2 (en) 2013-05-29 2019-01-29 Noblis, Inc. Systems and methods for SNP analysis and genome sequencing
WO2016103148A1 (fr) * 2014-12-23 2016-06-30 Koninklijke Philips N.V. Systèmes, procédés et appareils d'alignement de séquences
CN106021992A (zh) * 2015-03-27 2016-10-12 知源生信公司（美国硅谷） 位置相关变体识别计算流水线
US10560552B2 (en) 2015-05-21 2020-02-11 Noblis, Inc. Compression and transmission of genomic information
JP6884143B2 (ja) * 2015-10-21 2021-06-09 コーヒレント・ロジックス・インコーポレーテッド 階層的転置索引表を使用したｄｎａアラインメント
KR102384832B1 (ko) 2016-10-07 2022-04-08 일루미나, 인코포레이티드 뉴클레오타이드 서열분석 데이터의 이차 분석을 위한 시스템 및 방법
BR112019009830A2 (pt) * 2016-11-16 2019-08-13 Illumina, Inc. métodos para realinhamento de leitura de dados de sequenciamento
CA3058413A1 (fr) * 2017-03-29 2018-10-04 Nantomics, Llc Hachage de signature pour fichiers a sequences multiples
US11222712B2 (en) 2017-05-12 2022-01-11 Noblis, Inc. Primer design using indexed genomic information
JP7562426B2 (ja) * 2018-10-31 2024-10-07 イルミナ インコーポレイテッド 配列決定リードのグルーピングおよびコラプシングのためのシステムおよび方法
EP3938540A4 (fr) * 2019-03-15 2022-12-14 The Trustees of Columbia University in the City of New York Systèmes et procédés d'analyse de données de séquençage
CN112309501B (zh) * 2019-08-02 2025-01-28 华为技术有限公司 基因比对技术
US12195729B2 (en) 2020-04-16 2025-01-14 Noblis, Inc. Portable field-deployable nucleic acid sequencing kit
CA3216210A1 (fr) * 2021-04-06 2022-10-13 Rprd Diagnostics, Llc Procedes et systemes d'analyse de regions genomiques complexes

Family Cites Families (59)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2036946C (fr) * 1990-04-06 2001-10-16 Kenneth V. Deugau Molecules de liaison pour indexation
GB9214873D0 (en) * 1992-07-13 1992-08-26 Medical Res Council Process for categorising nucleotide sequence populations
US5871697A (en) * 1995-10-24 1999-02-16 Curagen Corporation Method and apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing
EP0880598A4 (fr) * 1996-01-23 2005-02-23 Affymetrix Inc Evaluation rapide de difference d'abondance d'acides nucleiques, avec un systeme d'oligonucleotides haute densite
US5994068A (en) * 1997-03-11 1999-11-30 Wisconsin Alumni Research Foundation Nucleic acid indexing
US6057779A (en) * 1997-08-14 2000-05-02 Micron Technology, Inc. Method of controlling access to a movable container and to a compartment of a vehicle, and a secure cargo transportation system
DE69901544T2 (de) * 1998-10-30 2003-01-16 International Business Machines Corp., Armonk Verfahren und vorrichtung zum erstellen eines musterwörterbuches zur anwendung in der erkennung von homologen sequenzen
WO2000043939A1 (fr) * 1999-01-25 2000-07-27 Institute Of Medicinal Molecular Design. Inc. Procede de description et de stockage de donnees d'alignement
US20020061526A1 (en) * 2000-05-19 2002-05-23 Jingfang Ju Method for analyzing a nucleic acid
US7657379B2 (en) * 2000-07-05 2010-02-02 Microsoft Corporation Methods and systems for determining the biological function of cell constituents using response profiles
US6963807B2 (en) * 2000-09-08 2005-11-08 Oxford Glycosciences (Uk) Ltd. Automated identification of peptides
US20050049795A1 (en) * 2001-08-21 2005-03-03 Miki Fikuda Biological sequence information reading method and storing method
US7406385B2 (en) * 2001-10-25 2008-07-29 Applera Corporation System and method for consensus-calling with per-base quality values for sample assemblies
US7809510B2 (en) * 2002-02-27 2010-10-05 Ip Genesis, Inc. Positional hashing method for performing DNA sequence similarity search
WO2003093434A2 (fr) * 2002-05-01 2003-11-13 Diversa Corporation Genome nanoarchaeum, polypeptides nanoarchaeum et acides nucleiques les codant et leurs procedes de fabrication et d'utilisation
US20040224330A1 (en) * 2003-01-15 2004-11-11 Liyan He Nucleic acid indexing
US20050142584A1 (en) * 2003-10-01 2005-06-30 Willson Richard C. Microbial identification based on the overall composition of characteristic oligonucleotides
US20050239102A1 (en) * 2003-10-31 2005-10-27 Verdine Gregory L Nucleic acid binding oligonucleotides
JP4614949B2 (ja) 2004-03-31 2011-01-19 株式会社バイオシンクタンク 塩基配列検索装置及び塩基配列検索方法
US7487169B2 (en) * 2004-11-24 2009-02-03 International Business Machines Corporation Method for finding the longest common subsequences between files with applications to differential compression
US7424371B2 (en) * 2004-12-21 2008-09-09 Helicos Biosciences Corporation Nucleic acid analysis
US20060286566A1 (en) * 2005-02-03 2006-12-21 Helicos Biosciences Corporation Detecting apparent mutations in nucleic acid sequences
WO2007008987A1 (fr) * 2005-07-11 2007-01-18 Emolecules, Inc. Indexation de mots-cles moleculaires pour le stockage, l'exploration et l'extraction de bases de donnees de structures chimiques
US8116988B2 (en) * 2006-05-19 2012-02-14 The University Of Chicago Method for indexing nucleic acid sequences for computer based searching
WO2008000090A1 (fr) * 2006-06-30 2008-01-03 University Of Guelph Classification de séquences de codes à barres d'adn
US8700334B2 (en) * 2006-07-31 2014-04-15 International Business Machines Corporation Methods and systems for reconstructing genomic common ancestors
US20100021914A1 (en) * 2006-11-23 2010-01-28 Querdenker Aps Oligonucleotides for modulating target rna activity
WO2008093098A2 (fr) * 2007-02-02 2008-08-07 Illumina Cambridge Limited Procedes pour indexer des echantillons et sequencer de multiples matrices nucleotidiques
GB0703793D0 (en) * 2007-02-27 2007-04-04 Biosystems Informatics Inst Signature peptide identification
US20100114918A1 (en) * 2007-05-31 2010-05-06 Isentio As Generation of degenerate sequences and identification of individual sequences from a degenerate sequence
US7809765B2 (en) * 2007-08-24 2010-10-05 General Electric Company Sequence identification and analysis
US8296075B2 (en) * 2008-05-21 2012-10-23 Mito Tech, LLC Computer system and computer-facilitated method for nucleic acid sequence alignment and analysis
US20110264377A1 (en) * 2008-11-14 2011-10-27 John Gerald Cleary Method and system for analysing data sequences
WO2010091023A2 (fr) * 2009-02-03 2010-08-12 Complete Genomics, Inc. Indexage d'une séquence de référence pour la cartographie d'une séquence d'oligomère
US20120089338A1 (en) * 2009-03-13 2012-04-12 Life Technologies Corporation Computer implemented method for indexing reference genome
WO2010105428A1 (fr) * 2009-03-19 2010-09-23 Google Inc. Éditeur de procédé d'entrée
US8259831B2 (en) * 2009-11-05 2012-09-04 Nec Laboratories America, Inc. Subband indexing methods and systems
US9165109B2 (en) * 2010-02-24 2015-10-20 Pacific Biosciences Of California, Inc. Sequence assembly and consensus sequence determination
US20110257889A1 (en) * 2010-02-24 2011-10-20 Pacific Biosciences Of California, Inc. Sequence assembly and consensus sequence determination
WO2011137368A2 (fr) * 2010-04-30 2011-11-03 Life Technologies Corporation Systèmes et méthodes d'analyse de séquences d'acides nucléiques
KR101638594B1 (ko) * 2010-05-26 2016-07-20 삼성전자주식회사 Ｄｎａ 서열 검색 방법 및 장치
WO2012006291A2 (fr) * 2010-07-06 2012-01-12 Life Technologies Corporation Systèmes et procédés pour détecter une variation de nombre de copies
WO2012012698A1 (fr) * 2010-07-23 2012-01-26 Board Of Trustees Of Michigan State University Féruloyl-coa:monolignol transférase
US20130053541A1 (en) * 2011-03-11 2013-02-28 Lynntech, Inc. Methods for discovering molecules that bind to proteins
WO2012158621A1 (fr) 2011-05-13 2012-11-22 Indiana University Reaserch And Technology Coporation Mappage sécurisé et évolutif de lectures de séquençage humain sur des nuages hybrides
EP2718862B1 (fr) * 2011-06-06 2018-10-31 Koninklijke Philips N.V. Procédé pour l'assemblage des données de séquence d'acide nucléique
US20130090266A1 (en) * 2011-10-11 2013-04-11 Biolauncher Ltd. Methods and systems for optimization of peptide screening
US8209130B1 (en) * 2012-04-04 2012-06-26 Good Start Genetics, Inc. Sequence assembly
CN102682226B (zh) * 2012-04-18 2015-09-30 盛司潼 一种核酸测序信息处理系统及方法
US9600625B2 (en) 2012-04-23 2017-03-21 Bina Technologies, Inc. Systems and methods for processing nucleic acid sequence data
US8812243B2 (en) 2012-05-09 2014-08-19 International Business Machines Corporation Transmission and compression of genetic data
WO2014081456A1 (fr) * 2012-11-26 2014-05-30 Illumina, Inc. Comparaison efficace de séquences polynucléotidiques
US20150337388A1 (en) * 2012-12-17 2015-11-26 Virginia Tech Intellectual Properties, Inc. Methods and compositions for identifying global microsatellite instability and for characterizing informative microsatellite loci
US20130309666A1 (en) * 2013-01-25 2013-11-21 Sequenom, Inc. Methods and processes for non-invasive assessment of genetic variations
EP3553175B1 (fr) * 2013-03-13 2021-07-14 Illumina, Inc. Procédé de préparation d'une banque de séquençage d'acides nucléiques
US10191929B2 (en) 2013-05-29 2019-01-29 Noblis, Inc. Systems and methods for SNP analysis and genome sequencing
CN104699998A (zh) 2013-12-06 2015-06-10 国际商业机器公司 用于对基因组进行压缩和解压缩的方法和装置
US10560552B2 (en) 2015-05-21 2020-02-11 Noblis, Inc. Compression and transmission of genomic information
US11222712B2 (en) 2017-05-12 2022-01-11 Noblis, Inc. Primer design using indexed genomic information

Also Published As

Publication number Publication date
EP2808814A2 (fr) 2014-12-03
US12141116B2 (en) 2024-11-12
US20140358937A1 (en) 2014-12-04
CN104217134A (zh) 2014-12-17
US10191929B2 (en) 2019-01-29
US11308056B2 (en) 2022-04-19
US20220253420A1 (en) 2022-08-11
US20190146962A1 (en) 2019-05-16
SG10201402714UA (en) 2014-12-30
EP2808814A3 (fr) 2015-06-03

Similar Documents

Publication Publication Date Title
SG10201402714UA (en) Systems and methods for snp analysis and genome sequencing
ES2547321T3 (es) Sistema y método para optimizar un sistema de seguimiento
Bagirov et al. Nonsmooth nonconvex optimization approach to clusterwise linear regression problems
PH12017501364A1 (en) Order allocation system and method
WO2014178050A3 (fr) Enregistrement 3d d'une pluralité de modèles 3d
TW201612743A (en) Bit group interleave processors, methods, systems, and instructions
HK1210292A1 (en) Secure mobile user interface
EP2951715A4 (fr) Graphe orienté à forces avec données en série chronologique
EP2837128A4 (fr) Nouveaux systèmes cryptographiques utilisant un appariement comprenant des erreurs
MX388338B (es) Sistemas y metodos para recolectar, rastrear y almacenar datos de rendimiento de sistema y de evento para dispositivos informaticos.
MX2016007151A (es) Indicacion de disponibilidad de usuario para comunicacion.
GB2531678A (en) Moving objects in primary computer based on memory errors in secondary computer
GB2526984A (en) Secure digital artifact storage and access
WO2014066052A3 (fr) Systèmes et procédés de partage de données commandé par un intérêt dans des systèmes de veille stratégique commandée par un intérêt
IL227982B (en) Missile system with navigation capability based on image processing
BR112015032864A2 (pt) método , sistema de computação , e meio de armazenamento legível por computador não transitório armazenando as instruções que mediante a execução causam um sistema
BR112015019392A2 (pt) gerenciamento de latência de memória
GB2571686A (en) System and method for analyzing and associating elements of a computer system by shared characteristics
EP3036648A4 (fr) Transfert de données amélioré dans des systèmes à multiples cpu
MX346840B (es) Hacer opcional una consulta de base vertical.
EP2863329A8 (fr) Établissement de localisation physique entre environnements d'exécution sûrs
EA201590756A1 (ru) Система сетевого принтера
TW201614494A (en) Data storage device and operating method thereof
EP2960803A4 (fr) Système de partage de données
GB201603947D0 (en) Document-based search with facet information