JPH02103459A - Densitometric pattern reading display recording device - Google Patents

Abstract

(57) [Abstract] This bulletin contains application data before electronic filing, so abstract data is not recorded.

Description

Detailed Description of the Invention [Industrial Application Fields] The present invention continuously detects the shading of a densitometric pattern of a substance to be measured, and determines the molecular weight from the position information based on the position information and the shading information. This invention relates to a densitometer suitable for determining the isoelectric point and calculating the absolute amount of each component by numerically inputting the optical density, area percentage, relative ratio of each component, and total amount from the isoelectric point information.

More preferably, the present invention relates to an apparatus for acquiring and analyzing shading information and position information of densitometric patterns of various electrophoresis gels, thin layer chromatography (TLC) gels, paper chromatography gels, and the like.

[Prior art] In clinical tests, biochemical research, etc., serum is electrophoresed and densitometric patterns are measured to measure the concentration and percentage of each component in protein fractions in serum, and to calculate the percentage of protein fractions in serum. Analyzing isozymes is widely practiced.

Furthermore, densitometric patterns of various proteins, peptides, and nucleic acids (DNA, RNA, etc.) ranging from low molecular weight to high molecular weight, and fragments thereof, are separated by electrophoresis or chromatography to be measured. The shading information of this densitometric pattern is often expressed using various pigments.

On the other hand, in order to determine the molecular weight and isoelectric point from the positional information of the densitometric pattern, standard substances with known molecular weights and isoelectric points are simultaneously moved and fractionated on the same gel, and each densitometric point of the standard substance is fractionated. The relationship between the moving distance of the metric pattern and the known molecular weight, isoelectric point, etc. is also expressed as a standard calibration curve and used.

At that time, it was usual to express the moving distance of each densitometric pattern, that is, the interval on the gel film, in units such as rhymes. However, with this method, even if the substance is the same, the distance traveled will usually vary depending on the measurement conditions, measurement time, etc. for each measurement, and it is not scientifically standardized, so it cannot be used with other materials. Comparisons were difficult.

As a means of solving the above-mentioned difficulties, the distance moved from the sample application point to each densitometric pattern toward the front end is determined by defining the side closer to the sample application point of the densitometric pattern in electrophoresis or chromatography separation as the rear end. A known method is to express the distance between the sample application point and the moving front edge of the fraction or the ratio (relative moving distance!@) to the moving front edge of the solvent in chromatographic separation. Relative movement distance value in electrophoresis etc. is usually calculated by setting the measurement interval distance between the measurement start point and measurement end point of the densitometric pattern as 1, and calculate the movement distance of each densitometric pattern from the measurement start point. Relative mobility expressed as a relative movement distance value with respect to the measurement distance interval between the measurement start point and measurement end point of the pattern
It is abbreviated as ) and is commonly used.

However, since this method is carried out by manual measurement using a ruler or the like, it is not only complicated and time-consuming, but also has the disadvantage of being inaccurate due to individual differences.

On the other hand, in electrophoresis, chromatography, and the like, it is possible to simultaneously fractionate many samples and measure densitometric patterns. Therefore, when determining the molecular weight or isoelectric point of a densitometric pattern, a standard sample with a known molecular weight or isoelectric point is separated by electrophoresis or chromatography on the same gel film at the same time as the experimental sample, and the components of the standard sample are separated by electrophoresis or chromatography. Expressing the relationship between the migration distance or Rm and the known molecular weight or isoelectric point on a standard calibration curve,
On the other hand, the calibration curve method (abbreviated as R
It is called the m method. ) is being carried out. However, similar to the above-mentioned method, these operations using the conventional method involve using a ruler or the like, which is not only complicated and time-consuming, but also lacks accuracy, which is a major problem.

[Problems to be Solved by the Invention] As described above, the present invention solves the problems of calculating and identifying the molecular weight or isoelectric point of a densitometric pattern of an unknown sample, which is time-consuming, inconvenient, and inaccurate. In order to eliminate
Automatically and easily, quickly and accurately based on the computer program software installed inside the densitometer from the known molecular weight or isoelectric point value separated by electrophoresis or chromatography and the optical measurement value of the migration distance. A densitometric pattern reading/display record characterized in that a calibration curve is created, then the molecular weight or isoelectric point is automatically calculated from the distance traveled by the measured unknown sample, and the calculation results are displayed and/or recorded. The aim is to provide equipment. In addition, in this case, a standard sample of the molecular weight or isoelectric point of the densitometric pattern is electrophoretically or chromatographically separated at the same time, and a standard calibration curve obtained from the known molecular weight or isoelectric point value of the standard sample and Rm is analyzed. Equipped with internal programming in the computer attached to the tomemeter,
It can be easily and quickly calculated, quantified, and/or displayed in a profile, printed out, and used to perform interpolation or extrapolation operations for the Rm of the experimental sample on a computer equipped with a densitometer based on the internal program. A program that allows you to scientifically, quickly, and accurately determine the molecular weight or isoelectric point of an experimental sample with simple operations by performing simple calculations and identifying the molecular weight or isoelectric point of the experimental sample. The purpose of this project is to develop a densitometer equipped with a computer containing software.

Furthermore, we believe that other purposes will become apparent as the following description or examples proceed.

[Means for solving the problem] In electrophoresis or chromatography separation, Rm can be programmed into a computer attached to a densitometer and incorporated into the computer to make it scientific, standardized, simple, quick, and
In order to enable efficient and accurate densitometric pattern measurement, the present invention includes the following components.

(1) In a densitometric pattern reading display recording device, the moving distance of each densitometric pattern from the measurement start point is calculated as the relative movement distance to the measurement distance interval between the measurement start point and the measurement end point of the densitometric pattern. A densitometric pattern reading, displaying and recording device that calculates values and displays and/or prints out relative movement distance values.

(2) A standard sample with a known molecular weight or isoelectric point is simultaneously electrophoretically or chromatographically separated on the same support as the experimental sample, and based on the signals from the densitometric pattern reader, the relative A standard calibration curve based on the relationship between the target movement distance value and the molecular weight or isoelectric point is calculated, created, displayed, and/or printed out using the device's internal computer program, and the relative movement of the densitometric pattern of the experimental sample is calculated. The above (1) comprises a means for interpolating or extrapolating this standard calibration curve to the distance value to identify the corresponding molecular weight and isoelectric point, converting it into numerical values, displaying it on a profile, and printing it out. The densitometric pattern reading display recording device as described in 2.

(3) The above-mentioned system is equipped with a computer equipped with a program that calculates the relative movement distance value of the densitometric pattern from the measurement starting point on the support to the center of gravity value of the peak area of the pattern. (
The densitometric pattern reading display recording device according to item 1) or (2).

(4) The above-described ( 1
) or the densitometric pattern reading display recording device according to item (2).

(5) A program that selects a part of the densitometric pattern as the measurement range, detects all the finely structured densitometric patterns, and automatically displays and prints out a profile enlarged from the actual distance traveled. The densitometric reading display/recording device according to item (1) above, further comprising an internal computer.

(6) Among the densitometric patterns of the experimental samples,
The above-mentioned system is equipped with a computer equipped with a program for calculating, displaying and printing out on a profile for identifying the molecular weight or isoelectric point using the standard calibration curve method at one point of the relative movement distance of an arbitrary pattern. The densitometric pattern reading display recording device according to item (1) or (2).

[Function] When determining Rm, the measurement starting point of a normal densitometric pattern is, for example, selected, for example, the point where the sample is applied between electric lines on the gel, but in the present invention, the measurement starting point is It is not necessarily limited to this point, but any place where there is no densitometric pattern at the rear end where the sample is not attached to the gel and has not been developed is jl! You may choose.

The measurement end point of a densitometric pattern in the Rm method is usually the leading edge where the densitometric pattern develops in electrophoresis, and the leading edge where the solvent develops and moves in chromatographic separation. However, in the present invention, a location where there is no densitometric pattern may be arbitrarily selected on the tip side of the leading edge where the densitometric pattern develops and moves, or conversely, an arbitrary location in the middle of the densitometric pattern may be selected. It is also possible to set it to the point.

Since each densitometric pattern usually has a width of a certain length, it is preferable to take the value of Rm up to the centroid value of the peak area, but for convenience, it can also be taken up to the maximum value of the peak. It may be taken at the rising point, or it may be taken at a certain fixed position within the peak. These may be automatically selected by a computer or may be selected manually.

The migration distance of each densitometric pattern is standardized by treating it with Rm, which not only makes it easier to compare densitometric patterns of gels with different measurement conditions, but also makes it easier to compare densitometric patterns of gels with different measurement conditions. Gels are also standardized, displayed on the display, and can be printed out.

To identify the molecular weight or isoelectric point of an experimental sample, a standard sample with a known molecular weight or isoelectric point is simultaneously electrophoresed or chromatographically separated on the same gel film as the experimental sample, and the known molecular weight or isoelectric point value of the standard sample is determined. Using the standard calibration curve from the densitometric pattern distance, the molecular weight or isoelectric point of the experimental sample can be calculated by interpolation or extrapolation using the computer program software installed in the densitometer, and then displayed and recorded. Not only is it easy and convenient to operate, it also allows scientific and accurate values to be obtained.

Experimental samples and standard samples are coated separately on a support, moved and
It may be developed or the experimental sample and the standard sample may be mixed and applied, then moved and developed.

The use of the Rm method is particularly significant in the calibration curve method. In other words, even in electrophoresis experiments using the same experimental sample or similar experimental samples, it is difficult to repeat the experiment or to make the measurement conditions exactly the same for different electrophoresis experiments, and it is difficult to perform densitometric measurements with different migration distances. Sometimes a pattern can be obtained. In that case, the molecular weights and isoelectric points determined by the calibration curve method should be the same or similar values, and by standardizing the corresponding migration distances using the Rm method, the migration distances (Rm) will be the same or similar. It can be said that it is more reasonable to have one.

In the present invention, the display of densitometric patterns using the Rm method and/or the identification using the calibration curve method can be performed quickly and in large quantities, so that densitometric patterns from a large number of samples containing different measurement conditions can be standardized. ,
This method allows comparisons to be made more accurately, quickly, and easily than manual methods, so it has the advantage of reducing the effort and time of the person who collects densitometric pattern information.

This Rm handling is useful for displaying, printing out, and analyzing fine parts of the densitometric pattern in detail, and by setting the densitometric pattern measurement range to a narrow distance, the densitometric pattern can be enlarged and displayed. There is an advantage that axis marking is performed.

When reading a densitometric pattern, the density of the densitometric pattern at each point is converted into an electrical signal, but smoothing of the densitometric pattern is performed to prevent electrical noise from being mistakenly read as a densitometric pattern. It will be done. If the measurement range of the densitometric pattern is set wide, there is a risk that the fine densitometric pattern will not be separated due to smoothing.However, by setting the measurement range of the densitometric pattern to a narrow range, it is possible to Denji,
It becomes possible to separate, fix, display and record all metric patterns.

In biochemical research and the like, values such as molecular weight or isoelectric point at one point in a densitometric pattern of electrophoresis or chromatography separation may be required. In this case, it is highly useful to be able to identify the molecular weight or isoelectric point using the standard calibration curve method at one point of any relative movement distance.

Conventionally, this was a complicated, time-consuming, inaccurate, and inaccurate manual method, but the present invention allows for a simple procedure to scientifically and quickly determine the molecular weight or isoelectric point of an experimental sample. can be determined accurately.

The display for displaying and printing out the profile may be a normal CRT or a liquid crystal display.

In the device of the present invention. [Concentration pattern analysis device] for which the present applicant has applied for a patent on October 12, 1988 can be applied to the specific reading means for the object to be measured, and thereby, the necessary and sufficient action,
The effect can be ensured.

[Embodiment] FIG. 1 shows a schematic or block diagram of an embodiment of the apparatus of the present invention.

In the figure, 1 is a mounting table consisting of a half mirror on which a sample such as a film is placed, and 2 is a pin photodiode, etc., which is a light receiving unit for reflected light from a reflection light source 4 equipped with an LED point beam for measuring the sample. The reflected light detection unit 3 used is a transmitted light detection unit which is also a light receiving unit for light from the transmission light source 5.
Reference numeral 6 denotes an analog voltmeter that inputs the conversion signal from the detection section 4, ) 2' or 3, and can be used as an index for adjusting the light amount of the light source 4 or 5.

7 is an interface, 8 is an analog-to-digital converter, 9 is a calculation unit that calculates the signal into a calibration curve, molecular weight, isoelectric point, area percentage, etc., IO is a display unit that displays the calculation results, ■ is a printer data buffer, 12
indicates a printer.

In the above-mentioned apparatus, an electrophoretic film or the like is placed on the support mounting table 1, and various conditions (measurement start point, measurement end point, number of measurements, etc.) necessary for measurement of the object to be measured are set using operation buttons (not shown). Enter into computer. According to the input signal, first, the light source and the detector are moved to the X-axis origin and Y-axis origin positions on the support mounting table, respectively, using the X-axis drive pulse motor and the Y-axis drive pulse motor as drive sources. After that, the computer attached to the device (CPU)
According to the information inputted in advance in >, the detection means is irradiated onto an automatic electrophoresis film or the like up to the measurement start point of the object to be measured, and the reflected light is received by the reflected light detection section 2.

On the other hand, in "transmitted light mode j, the transmitted light light source 5 is turned on,
The light from the light source is similarly irradiated onto an electrophoretic film or the like, and the transmitted light is received by the transmitted light detection section 3.

A pin photodiode included in the reflected light detection section 2 or the transmitted light detection section 3 converts the received optical signal into an electrical signal and transmits it to the analog voltmeter 6 and the interface 7. The pattern position information at this time is simultaneously input to the computer based on the number of steps (pulses) required to move the densitometric pattern from the measurement start point of the X-axis sub-movement stepping motor and the Y-axis drive stepping motor.

The electrical signal is converted into an analog-to-analog signal by an analog-to-digital converter 8.
After being digitally converted, it is transmitted to the calculation section 9. Each calculation is performed in the calculation section, and the results of the calculation are displayed on the display section IO.

Alternatively, the calculation results are stored in the printer data buffer section 11 and then output and recorded from the printer I2, if necessary.

Next, a specific example of automatic molecular weight measurement analyzed using the densitometric pattern reading, displaying and recording device according to this embodiment will be explained based on FIGS. 2, 3, 4 and 5.

That is, FIG. 2 shows an example of an electrophoretic film after electrophoresis. On the film 13, 14 indicates a standard sample for molecular weight measurement, and 15 indicates a sample of unknown molecular weight.

First, the density of the standard sample 14 for molecular weight measurement is measured at the measurement starting point A.
The densitometric pattern is read from to the measurement end point B, and the densitometric pattern is displayed on the display section IO.

FIG. 3 shows the densitometric pattern. At the same time, the moving distance of each peak (14a to 14d) of the densitometric pattern is detected as a relative mobility Rm by the centroid method (Rml to 2), and after storing it in the calculation unit 9, a slope line corresponding to each peak is detected. A standard molecular weight calibration curve consisting of the following is created and stored in the calculation unit 9. Next, the density of the densitometric pattern of the unknown molecular weight sample 15 (see Figure 2) was read from the measurement start point C to the measurement end point (see Figure 5) in the same way as the standard sample for molecular weight measurement. Detect each peak (15a - 15b) of the densitometric pattern and its migration distance as the relative mobility Rm (Rm5-6) using the center of gravity method, and use the previously prepared molecular weight standard calibration (see Figure 4). ), the molecular weight corresponding to each peak is calculated, displayed on the display section 10, and recorded on the printer 12.

The molecular weight E is the molecular weight corresponding to the peak 15a calculated from the molecular weight calibration curve in this manner, and the molecular weight F is the molecular weight corresponding to the peak 15b calculated in the same manner.

The embodiments described above are merely one of the preferred embodiments of the present invention, and each element constituting the embodiments is generally known in the art at the time of this application.
It is obvious that another member having the same function can be substituted.

Therefore, each device described or used in this embodiment should not be used as a limiting interpretation of the technology of the present invention.

[Effects of the Invention] As explained above, the present invention has advantages over conventional means by developing a densitometric pattern reading, displaying and recording device with a calibration curve creation function and a computer with a built-in program for calculating molecular weight or isoelectric point. As a result, it has become possible to measure the molecular weight and isoelectric point of unknown samples easily, extremely quickly, and efficiently and accurately.

[Brief explanation of the drawing]

FIG. 1 is a block diagram of an embodiment of the densitometric pattern reading, displaying and recording apparatus of the present invention, and FIGS.
The figure is a diagram illustrating the process of automatically measuring the molecular weight of an unknown sample using the apparatus of the present invention using a specific example. 1...Support mounting table, 2...Reflected light detection unit,
3... Transmitted light detection section, 4... Light source for reflected light,
5... Light source for transmitted light, 6... Analog voltmeter, 7... Interface, 8... Analog-digital converter, 9... Arithmetic unit, IO... Display section, +1...Alinter data buffer, 12...Printer. Agent Patent Attorney Ei 1) Hiroshi - Figure 2 Figure 3 □Transfer! 77 Distance Race Figure 4 Figure 5 Procedural Amendments December 15, 1999

Claims (6)

[Claims] (1) In a densitometric pattern reading display recording device, the moving distance of each densitometric pattern from the measurement start point is calculated as the relative movement distance to the measurement distance interval between the measurement start point and the measurement end point of the densitometric pattern. A densitometric pattern reading, displaying and recording device that calculates values and displays and/or prints out relative movement distance values. (2) A standard sample with a known molecular weight or isoelectric point is simultaneously electrophoretically or chromatographically separated on the same support as the experimental sample, and based on the signals from the densitometric pattern reader, the relative A standard calibration curve based on the relationship between the migration distance value and the molecular weight or isoelectric point is calculated and created using the device's internal computer program.
Display and/or print out, interpolate or extrapolate this standard calibration curve to the relative movement distance value of the densitometric pattern of the experimental sample, and calculate the numerical value and identify the corresponding molecular weight and isoelectric point. The densitometric pattern reading, displaying and recording device according to claim 1, further comprising means for displaying and printing out a profile. (3) A claim comprising a computer equipped with a program that calculates the relative movement distance value of the densitometric pattern from the measurement start point on the support to the center of gravity value of the peak area of the pattern. The densitometric pattern reading display recording device according to item (1) or (2). (4) A claim comprising a computer equipped with a program for calculating the relative movement distance value of the densitometric pattern from the measurement start point on the support to the maximum peak value of the pattern. (
The densitometric pattern reading display recording device according to 1) or (2). (5) A program that selects a part of the densitometric pattern as the measurement range, detects all the finely structured densitometric patterns, and automatically displays and prints out a profile enlarged from the actual distance traveled. The densitometric reading display recording device according to claim 1, further comprising an internal computer. (6) Among the densitometric patterns of the experimental samples,
A claim consisting of a computer equipped with a program to identify the molecular weight or isoelectric point using the standard calibration curve method for one point of the relative movement distance of an arbitrary pattern, and to display and print out on a profile. The densitometric pattern reading display recording device according to item (1) or (2).