JPH06500556A - 連結分子を介する3’―尾分子付オリゴヌクレオチドの固体支持体合成 - Google Patents
連結分子を介する3’―尾分子付オリゴヌクレオチドの固体支持体合成Info
- Publication number
- JPH06500556A JPH06500556A JP3515341A JP51534191A JPH06500556A JP H06500556 A JPH06500556 A JP H06500556A JP 3515341 A JP3515341 A JP 3515341A JP 51534191 A JP51534191 A JP 51534191A JP H06500556 A JPH06500556 A JP H06500556A
- Authority
- JP
- Japan
- Prior art keywords
- molecule
- oligonucleotide
- group
- tail
- tables
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 108091034117 Oligonucleotide Proteins 0.000 title claims description 141
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- OAICVXFJPJFONN-UHFFFAOYSA-N Phosphorus Chemical compound [P] OAICVXFJPJFONN-UHFFFAOYSA-N 0.000 claims description 4
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- 239000000243 solution Substances 0.000 description 35
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 33
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- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 28
- VHYFNPMBLIVWCW-UHFFFAOYSA-N 4-Dimethylaminopyridine Chemical compound CN(C)C1=CC=NC=C1 VHYFNPMBLIVWCW-UHFFFAOYSA-N 0.000 description 26
- XKRFYHLGVUSROY-UHFFFAOYSA-N Argon Chemical compound [Ar] XKRFYHLGVUSROY-UHFFFAOYSA-N 0.000 description 26
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 25
- HVYWMOMLDIMFJA-DPAQBDIFSA-N cholesterol group Chemical group [C@@H]1(CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C)[C@H](C)CCCC(C)C HVYWMOMLDIMFJA-DPAQBDIFSA-N 0.000 description 24
- VLKZOEOYAKHREP-UHFFFAOYSA-N n-Hexane Chemical compound CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 23
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- WFDIJRYMOXRFFG-UHFFFAOYSA-N Acetic anhydride Chemical compound CC(=O)OC(C)=O WFDIJRYMOXRFFG-UHFFFAOYSA-N 0.000 description 21
- 238000004458 analytical method Methods 0.000 description 21
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- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 20
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 19
- 108020004414 DNA Proteins 0.000 description 19
- 238000004128 high performance liquid chromatography Methods 0.000 description 19
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- 125000003277 amino group Chemical group 0.000 description 13
- 229910052786 argon Inorganic materials 0.000 description 13
- WYURNTSHIVDZCO-UHFFFAOYSA-N tetrahydrofuran Substances C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 13
- 230000002829 reductive effect Effects 0.000 description 12
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- 125000002103 4,4'-dimethoxytriphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H] 0.000 description 9
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- 238000001308 synthesis method Methods 0.000 description 1
- 230000009897 systematic effect Effects 0.000 description 1
- WWJZWCUNLNYYAU-UHFFFAOYSA-N temephos Chemical compound C1=CC(OP(=S)(OC)OC)=CC=C1SC1=CC=C(OP(=S)(OC)OC)C=C1 WWJZWCUNLNYYAU-UHFFFAOYSA-N 0.000 description 1
- 125000003396 thiol group Chemical group [H]S* 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- FGMPLJWBKKVCDB-UHFFFAOYSA-N trans-L-hydroxy-proline Natural products ON1CCCC1C(O)=O FGMPLJWBKKVCDB-UHFFFAOYSA-N 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 238000005866 tritylation reaction Methods 0.000 description 1
- 238000000108 ultra-filtration Methods 0.000 description 1
- ORHBXUUXSCNDEV-UHFFFAOYSA-N umbelliferone Chemical compound C1=CC(=O)OC2=CC(O)=CC=C21 ORHBXUUXSCNDEV-UHFFFAOYSA-N 0.000 description 1
- 238000003828 vacuum filtration Methods 0.000 description 1
- 239000011787 zinc oxide Substances 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
- C07D401/06—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D207/00—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom
- C07D207/02—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D207/04—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
- C07D207/10—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D207/12—Oxygen or sulfur atoms
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Saccharide Compounds (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Description
Claims (13)
- 1.連結分子を介してその3′末端に連結した低分子量の尾を有するオリゴヌク レオチドを合成するにあたり、 (a)連結分子として、3つの独立した官能基(ただし、1つの官能基の化学的 反応性は他の2つの官能基の反応性とは異なる。)を有する連結分子を選択し、 (b)連結分子の第1官能基を低分子量の尾分子と反応させて、当該連結分子と 当該尾分子を結合させ、 (c)結合尾分子を有する上記連結分子の第2官能基を固相支持体と反応させて 、当該連結分子と当該固相支持体を結合させ、(d)第1の3′ホスホロアミダ イト・ヌクレオチドの3′末端を上記連結分子の第3官能基と反応させて、当該 第1ヌクレオチドをその3′末端を介して当該連結分子に結合させ(かかる第1 ヌクレオチドの連結分子への結合は、当該第1ヌクレオチドを当該連結分子を介 して尾分子に連結させるとともに、当該第1ヌクレオチドを当該連結分子を介し て固相支持体に連結させるものである。)、(e)さらに、付加的な3′ホスホ ロアミダイト・ヌクレオチドを、先行するヌクレオチドの5′末端と連続的に反 応させて、オリゴヌクレオチドの3′末端において連結分子に結合した合成オリ ゴヌクレオチドを形成し(かかる合成オリゴヌクレオチドのその3′末端におけ る連結分子への結合は、当該オリゴヌクレオチドを当該連結分子を介して当該オ リゴヌクレオチド3′末端における尾分子に連結させるとともに、当該オリゴヌ クレオチドを固相支持体に、当該付加的なヌクレオチドの連続反応の間に連結さ せるものである。)、(f)連結分子を介してその3′末端に連結した尾分子を 有するオリゴヌクレオチドを固相支持体から、当該連結分子の第2官能基と当該 固相支持体の間の連結の開裂によって分離させ、次いで (g)連結分子を介してその3′末端に連結した尾分子を有するオリゴヌクレオ チドを単離する ことを特徴とする方法。
- 2.連結分子の官能基が第一級アルコール、第二級アルコールおよびアミンであ る請求項1記載の方法。
- 3.尾分子をアミンと反応させて、当該尾分子を連結分子に結合させ、固相支持 体を第二級アルコールと反応させて、連結尾分子を有する当該連結分子を当該固 相支持体に結合させ、第1ホスホロアミダイト・ヌクレオチドを第一級アルコー ルと反応させて、当該第1ヌクレオチドを当該連結分子に結合させる請求項2記 載の方法。
- 4.3′末端を有するオリゴヌクレオチドからなる誘導体オリゴヌクレオチドで あって、 当該3′末端に位置するホスフェートエステルが式:▲数式、化学式、表等があ ります▼または▲数式、化学式、表等があります▼ 〔式中、Zは、▲数式、化学式、表等があります▼、▲数式、化学式、表等があ ります▼、▲数式、化学式、表等があります▼、▲数式、化学式、表等がありま す▼、または▲数式、化学式、表等があります▼、mおよびm′は各々独立して 11よりも小さな正の整数、nは0または1、Qは接続基、およびRはレポータ ー基、インターカレーター基および親液性基および開裂基からなる群から選ばれ るものである。〕で示されるオリゴヌクレオチド。
- 5.式: ▲数式、化学式、表等があります▼または▲数式、化学式、表等があります▼ 〔式中、Zは、▲数式、化学式、表等があります▼、▲数式、化学式、表等があ ります▼、▲数式、化学式、表等があります▼、▲数式、化学式、表等がありま す▼、または▲数式、化学式、表等があります▼mおよびm′は各々独立して1 1よりも小さな正の整数、nは0または1、Qは接続基、およびRはレポーター 基、インターカレーター基および親液性基または新油性基および開裂基からなる 群から選ばれるもの、Yは水素またはジメトキシトリチル、およびXは固相支持 体である。〕で示されるオリゴヌクレオチド合成用の化合物または支持体。
- 6.式: ▲数式、化学式、表等があります▼または▲数式、化学式、表等があります▼ 〔式中、Zは ▲数式、化学式、表等があります▼、▲数式、化学式、表等があります▼、▲数 式、化学式、表等があります▼、▲数式、化学式、表等があります▼、または▲ 数式、化学式、表等があります▼mおよびm′は各々独立して11よりも小さな 正の整数、nは0または1、Qは接続基、およびRはレポーター基、インターカ レーター基および親液性基および開裂基からなる群から選ばれるもの、Yは水素 またはジメトキシトリチルである。〕で示される化合物。
- 7.インターカレーター薬剤をオリゴヌクレオチドの内部に導入するにあたり、 内部アミン修飾を有するオリゴヌクレオチドを式:▲数式、化学式、表等があり ます▼インターカレーター薬剤〔式中、nは1〜10、Rはアミンと反応してア ミドを形成可能な活性エステル〕で示される化合物と反応させ、次いで 内部にインターカレーター薬剤を有するオリゴヌクレオチドを単離することを特 徴とする方法。
- 8.式: ▲数式、化学式、表等があります▼ 〔式中、Rはアルキル、アリール、アリールアルキル、ヘテロアルキルまたはヘ テロアリールである。〕 で示されるオリゴヌクレオチド合成用の固体支持体。
- 9.その3′末端に連結したアミン・尾分子を有するオリゴヌクレオチドを合成 するにあたり、 (a)請求項8記載の固体支持体であるヒドロキシ誘導体を、第1の3′ホスホ ロアミダイト・ヌクレオチドと反応させ、(b)付加的な3′ホスホロアミダイ ト・ヌクレオチドを、先行するヌクレオチドの5′末端と連続的に反応させて、 その3′末端において当該化合物に結合した合成オリゴヌクレオチドを形成し、 (c)固定化合成オリゴヌクレオチドを水性アンモニアでインキュベートして、 3′−アミン末端を有する合成オリゴヌクレオチドを分離・放出させ、次いで( d)3′−アミン・テールを有するオリゴヌクレオチドを単離することを特徴と する方法。
- 10.単離したのち、3′−アミン・テールを有するオリゴヌクレオチドを親電 子性尾形成用薬剤と反応させて、その3′末端に結合した官能基を有するオリゴ ヌクレオチドを形成し、次いで その3′末端に結合した官能基を有するオリゴヌクレオチドを単離することから なる請求項9記載の方法。
- 11.ヌクレアーゼ耐性のオリゴヌクレオチドを合成するにあたり、式:X−O −R−O−Y〔Xは固体支持体、Rはアルキル、アリール、アリールアルキル、 ヘテロアルキルまたはヘテロアリール、Yは水素またはジメトキシトリチルであ る。〕で表わされる修飾固体支持体を用い、修飾固体支持体のヒドロキシ誘導体 を第1の3′ホスホロアミダイト・ヌクレオチドの3′末端と反応させ、 付加的な3′ホスホロアミダイト・ヌクレオチドを先行するヌクレオチドの5′ 末端と反応させて、その3′末端で当該化合物に結合する固定化・合成ヌクレオ チドを形成し、 固定化・合成オリゴヌクレオチドを水性アンモニアでインキュベートして3′− アミン・テールを有する合成オリゴヌクレオチドを分離・放出させ、次いで3′ −アミン・テールを有するオリゴヌクレオチドを単離することを特徴とする方法 。
- 12.テトラフルオロフェニルトリフルオロアセテートからなるカルボン酸のT FPエステル製造用の化合物。
- 13.カルボン酸含有インターカレーター薬剤のテトラフルオロフェニル・エス テルからなる化合物。
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US57434890A | 1990-08-28 | 1990-08-28 | |
| US574,348 | 1990-08-28 | ||
| US71414291A | 1991-06-10 | 1991-06-10 | |
| US714,142 | 1991-06-10 | ||
| CA002089588A CA2089588A1 (en) | 1990-08-28 | 1993-02-16 | Solid support synthesis of 3'-tailed oligonucleotides via a linking molecule |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2000246403A Division JP3284127B2 (ja) | 1990-08-28 | 2000-08-15 | オリゴヌクレオチドの固相支持体 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JPH06500556A true JPH06500556A (ja) | 1994-01-20 |
| JP3256539B2 JP3256539B2 (ja) | 2002-02-12 |
Family
ID=27169350
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP51534191A Expired - Fee Related JP3256539B2 (ja) | 1990-08-28 | 1991-08-28 | 連結分子を介する3’―尾分子付オリゴヌクレオチドの固体支持体合成 |
Country Status (4)
| Country | Link |
|---|---|
| EP (1) | EP0547142A1 (ja) |
| JP (1) | JP3256539B2 (ja) |
| CA (1) | CA2089588A1 (ja) |
| WO (1) | WO1992003464A1 (ja) |
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Family Cites Families (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0972779A3 (en) * | 1987-10-28 | 2004-10-20 | Howard Florey Institute Of Experimental Physiology And Medicine | Oligonucleotide-polyamide conjugates |
-
1991
- 1991-08-28 EP EP91916634A patent/EP0547142A1/en not_active Withdrawn
- 1991-08-28 WO PCT/US1991/006143 patent/WO1992003464A1/en not_active Ceased
- 1991-08-28 JP JP51534191A patent/JP3256539B2/ja not_active Expired - Fee Related
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1993
- 1993-02-16 CA CA002089588A patent/CA2089588A1/en not_active Abandoned
Cited By (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2007525454A (ja) * | 2003-04-17 | 2007-09-06 | アルナイラム ファーマシューティカルズ インコーポレイテッド | 修飾iRNA剤 |
| JP2007525453A (ja) * | 2003-04-17 | 2007-09-06 | アルナイラム ファーマシューティカルズ インコーポレイテッド | 保護モノマー |
| WO2007094218A1 (ja) * | 2006-02-16 | 2007-08-23 | Gifu University | 修飾オリゴヌクレオチド |
| JP2010504355A (ja) * | 2006-09-22 | 2010-02-12 | ダーマコン, インコーポレイテッド | 二本鎖オリゴヌクレオチド複合体、rna干渉による遺伝子サイレンシング方法、および医薬品組成物 |
| WO2015125845A1 (ja) * | 2014-02-20 | 2015-08-27 | 塩野義製薬株式会社 | 含窒素非芳香族複素環を含む核酸のリン酸部位修飾 |
| WO2021177419A1 (ja) * | 2020-03-04 | 2021-09-10 | 国立大学法人京都大学 | アンチセンスオリゴヌクレオチド医薬のスクリーニング方法 |
Also Published As
| Publication number | Publication date |
|---|---|
| EP0547142A1 (en) | 1993-06-23 |
| CA2089588A1 (en) | 1994-08-17 |
| JP3256539B2 (ja) | 2002-02-12 |
| EP0547142A4 (ja) | 1995-01-18 |
| WO1992003464A1 (en) | 1992-03-05 |
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