NO20070611L - Resekvensering av patogene mikroarray. - Google Patents

Resekvensering av patogene mikroarray.

Info

Publication number
NO20070611L
NO20070611L NO20070611A NO20070611A NO20070611L NO 20070611 L NO20070611 L NO 20070611L NO 20070611 A NO20070611 A NO 20070611A NO 20070611 A NO20070611 A NO 20070611A NO 20070611 L NO20070611 L NO 20070611L
Authority
NO
Norway
Prior art keywords
present
resequencing
pathogenic organisms
pathogenic
biological
Prior art date
Application number
NO20070611A
Other languages
English (en)
Inventor
Brian Agan
Eric H Hanson
Russell Kruzelock
Boachuan Lin
Robb Rowley
Don Seto
David Stenger
Jennifer Thomton
Clark Tibbetts
Dzung Thach
Gary Vora
Elizabeth Walther
Zheng Wang
Original Assignee
Us Gov Sec Navy
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Us Gov Sec Navy filed Critical Us Gov Sec Navy
Publication of NO20070611L publication Critical patent/NO20070611L/no

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Virology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

Foreliggende oppfinnelse vedrører påvisning og identifisering av patogene organismer ved hjelp av DNA-resekvenseringsmikromatriser. Foreliggende oppfinnelse tilveiebringer også resekvenseringsmikromatrisebrikker for differensiell diagnose og serotyping av patogene organismer som foreligger i en biologisk prøve. Foreliggende oppfinnelse tilveiebringer videre fremgangsmåter for påvisning av nærvær og identitet av patogene organismer som foreligger i en biologisk prøve. Foreliggende oppfinnelse tilveiebringer også et datamaskinimplementert system for identifisering av biologiske sekvenser (CIBSI) og en fremgangsmåte for utvelgelse av en undersekvens fra biologiske sekvensdata ifølge minst én seleksjonsparameter. Den minst ene seleksjonsparameter tilsvarer en sannsynlighet for erholdelse av et meningsfylt resultat fra et likhetssøk.
NO20070611A 2004-07-02 2007-02-01 Resekvensering av patogene mikroarray. NO20070611L (no)

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US59093104P 2004-07-02 2004-07-02
US60991804P 2004-09-15 2004-09-15
US63143704P 2004-11-29 2004-11-29
US63146004P 2004-11-29 2004-11-29
US69176805P 2005-06-16 2005-06-16
PCT/US2005/024054 WO2006088493A2 (en) 2004-07-02 2005-07-05 Resequencing pathogen microarray

Publications (1)

Publication Number Publication Date
NO20070611L true NO20070611L (no) 2007-03-29

Family

ID=36916882

Family Applications (1)

Application Number Title Priority Date Filing Date
NO20070611A NO20070611L (no) 2004-07-02 2007-02-01 Resekvensering av patogene mikroarray.

Country Status (10)

Country Link
US (4) US20060210967A1 (no)
EP (3) EP2383670A1 (no)
JP (3) JP2008504844A (no)
CN (2) CN103224942A (no)
AU (1) AU2005327520B2 (no)
CA (2) CA2823727A1 (no)
NO (1) NO20070611L (no)
NZ (2) NZ579206A (no)
SG (1) SG156616A1 (no)
WO (1) WO2006088493A2 (no)

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Also Published As

Publication number Publication date
US20060210967A1 (en) 2006-09-21
JP5455977B2 (ja) 2014-03-26
CA2572617A1 (en) 2006-08-24
EP2385477A1 (en) 2011-11-09
HK1118081A1 (en) 2009-01-30
JP2011204261A (ja) 2011-10-13
AU2005327520B2 (en) 2011-04-28
WO2006088493A8 (en) 2007-08-09
CN103224942A (zh) 2013-07-31
CA2572617C (en) 2013-10-29
JP2011200250A (ja) 2011-10-13
EP2383670A1 (en) 2011-11-02
AU2005327520A1 (en) 2006-08-24
EP1778881A4 (en) 2008-12-10
SG156616A1 (en) 2009-11-26
JP2008504844A (ja) 2008-02-21
NZ552432A (en) 2009-11-27
EP1778881A2 (en) 2007-05-02
US20120035857A1 (en) 2012-02-09
US20090170717A1 (en) 2009-07-02
US8032310B2 (en) 2011-10-04
WO2006088493A3 (en) 2007-05-31
CA2823727A1 (en) 2006-08-24
WO2006088493A2 (en) 2006-08-24
US9430610B2 (en) 2016-08-30
JP5517996B2 (ja) 2014-06-11
CN101133164A (zh) 2008-02-27
NZ579206A (en) 2011-04-29
US20070065832A1 (en) 2007-03-22
CN101133164B (zh) 2014-01-22

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