OA19245A - GLP-1 receptor agonists and uses thereof. - Google Patents

GLP-1 receptor agonists and uses thereof. Download PDF

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Publication number
OA19245A
OA19245A OA1201900230 OA19245A OA 19245 A OA19245 A OA 19245A OA 1201900230 OA1201900230 OA 1201900230 OA 19245 A OA19245 A OA 19245A
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OAPI
Prior art keywords
methyl
oxy
pyridin
carboxylic acid
benzimidazole
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OA1201900230
Inventor
Kentaro Futatsugi
Kim HUARD
David James EDMONDS
Wenhua Jiao
Matthew S. Dowling
Gary Erik Aspnes
Scott W. Bagley
John M. Curto
Mark E. Flanagan
David A. Griffith
Gajendra Ingle
Chris Limberakis
Alan M. Mathiowetz
David W. Piotrowski
Roger B. Ruggeri
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Pfizer Inc.
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Publication of OA19245A publication Critical patent/OA19245A/en

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Abstract

Provided herein are 6-carboxylic acids of benzimidazoles and 4-aza-, 5-aza-, 7-aza- and 4,7-diaza-benzimidazoles as GLP-1R agonists, processes to make said compounds, and methods comprising administering said compounds to a mammal in need thereof.

Description

GLP-1 RECEPTOR AGONISTS AND USES THEREOF
FIELDOF INVENTION
Provided herein are 6-carboxylic acids of benzimidazoles and 4-aza-, 5-aza-, 7-aza-, and 4,7-diaza-benzimidazoles as GLP-1 R agonists, processes to make said compounds, and methods comprising administering said compounds to a mammal in need thereof.
BACKGROUND OF THE INVENTION
Diabètes is a major public health concern because of its increasing prevalence and associated health risks. The disease is characterized by high levels of blood glucose resulting from defects in insulin production, insulin action, or both. Two major forms of diabètes are recognized, Type 1 and Type 2. Type 1 diabètes (T1D) develops when the body's immune System destroys pancreatic beta cells, the only cells in the body that make the hormone insulin that régulâtes blood glucose. To survive, people with Type 1 diabètes must hâve insulin administered by injection or a pump. Type 2 diabètes mellitus (referred to generally as T2DM) usually begins with either insulin résistance or when there is insufficient production of insulin to maintain an acceptable glucose level.
Currently, various pharmacological approaches are available for treating hyperglycemia and subsequently, T2DM (Hampp, C. et al. Use of Antidiabetic Drugs in the U.S., 2003-2012, Diabètes Care 2014, 37, 1367-1374). These may be grouped into six major classes, each acting through a different primary mechanism: (A) Insulin secretogogues, including sulphonyl-ureas (e.g., glipizide, glimepiride, glyburide), meglitinides (e.g., nateglidine, repaglinide), dipeptidyl peptidase IV (DPP-IV) inhibitors (e.g., sitagliptin, vildagliptin, alogliptin, dutogliptin, linagliptin, saxogliptin), and glucagonlike peptide-1 receptor (GLP-1 R) agonists (e.g., liraglutide, albiglutide, exenatide, lixisenatide, dulaglutide, semaglutide), which enhance sécrétion of insulin by acting on the pancreatic beta-cells. Sulphonyl-ureas and meglitinides hâve limited efficacy and tolerability, cause weight gain and often induce hypoglycemia. DPP-IV inhibitors hâve limited efficacy. Marketed GLP-1 R agonists are peptides administered by subcutaneous injection. Liraglutide is additionally approved for the treatment of obesity. (B) Biguanides (e.g., metformin) are thought to act primarily by decreasing hepatic glucose production. Biguanides often cause gastrointestinal disturbances and lactic acidosis, further limiting 1 their use. (C) Inhibitors of alpha-glucosidase (e.g., acarbose) decrease intestinal glucose absorption. These agents often cause gastrointestinal disturbances. (D) Thiazolidinediones (e.g., pioglitazone, rosiglitazone) act on a spécifie receptor (peroxisome proliferator-activated receptor-gamma) in the liver, muscle and fat tissues. They regulate lipid metabolism subsequently enhancing the response of these tissues to the actions of insulin. Frequent use of these drugs may lead to weight gain and may induce edema and anémia. (E) Insulin is used in more severe cases, either alone or in combination with the above agents, and frequent use may also lead to weight gain and carries a risk of hypoglycemia. (F) sodium-glucose linked transporter cotransporter 2 (SGLT2) inhibitors (e.g., dapagliflozin, empagliflozin, canagliflozin, ertugliflozin) inhibit reabsorption of glucose in the kidneys and thereby lower glucose levels in the blood. This emerging class of drugs may be associated with ketoacidosis and urinary tract infections.
However, with the exception of GLP-1R agonists and SGLT2 inhibitors, the drugs hâve limited efficacy and do not address the most important problems, the declining βcell function and the associated obesity.
Obesity is a chronic disease that is highly prévalent in modem society and is associated with numerous medical problems including hypertension, hypercholesterolemia, and coronary heart disease. It is further highly correlated with T2DM and insulin résistance, the latter of which is generally accompanied by hyperinsulinemia or hyperglycemia, or both. In addition, T2DM is associated with a two to fourfold increased risk of coronary artery disease. Presently, the only treatment that éliminâtes obesity with high efficacy is bariatric surgery, but this treatment is costly and risky. Pharmacological intervention is generally less efficacious and associated with side effects. There is therefore an obvious need for more efficacious pharmacological intervention with fewer side effects and convenient administration.
Although T2DM is most commonly associated with hyperglycemia and insulin résistance, other diseases associated with T2DM include hepatic insulin résistance, impaired glucose tolérance, diabetic neuropathy, diabetic nephropathy, diabetic retinopathy, obesity, dyslipidemia, hypertension, hyperinsulinemia and nonalcoholic fatty liver disease (NAFLD).
NAFLD is the hepatic manifestation of metabolic syndrome, and is a spectrum of hepatic conditions encompassing steatosis, non-alcoholic steatohepatitis (NASH), fibrosis, cirrhosis and ultimately hepatocellular carcinoma. NAFLD and NASH are considered the primary fatty liver diseases as they account for the greatest proportion of individuals with elevated hepatic lipids. The severity of NAFLD/NASH is based on the presence of lipid, inflammatory cell infiltrate, hépatocyte ballooning, and the degree of fibrosis. Although not ail individuals with steatosis progress to NASH, a substantial portion does.
GLP-1 is a 30 amino acid long incretin hormone secreted by the L-cells in the intestine in response to ingestion of food. GLP-1 has been shown to stimulate insuiin sécrétion in a physiological and glucose-dependent manner, decrease glucagon sécrétion, inhibit gastric emptying, decrease appetite, and stimulate prolifération of betacells. In non-clinical experiments GLP-1 promûtes continued beta-cell compétence by stimulating transcription of genes important for glucose-dependent insuiin sécrétion and by promoting beta-cell neogenesis (Meier, étal. Biodrugs. 2003; 17 (2): 93-102).
In a healthy individual, GLP-1 plays an important rôle regulating post-prandial blood glucose levels by stimulating glucose-dependent insuiin sécrétion by the pancréas resulting in increased glucose absorption in the periphery. GLP-1 also suppresses glucagon sécrétion, leading to reduced hepatic glucose output. In addition, GLP-1 delays gastric emptying and slows small bowel motility delaying food absorption. In people with T2DM, the normal post-prandial rise in GLP-1 is absent or reduced (Vilsboll T, et al. Diabètes. 2001. 50; 609-613).
Holst (Physiol. Rev. 2007, 87, 1409) and Meier (Nat. Rev. Endocrinol. 2012, 8, 728) describe that GLP-1 receptor agonists, such as GLP-1, liraglutide and exendin-4, hâve 3 major pharmacological activities to improve glycémie control in patients with T2DM by reducing fasting and postprandial glucose (FPG and PPG): (i) increased glucosedependent insuiin sécrétion (improved firstr and second-phase), (ii) glucagon suppressing activity under hyperglycémie conditions, (iii) delay of gastric emptying rate resulting in retarded absorption of meal-derived glucose.
There remains a need for an easily-administered prévention and/or treatment for cardiometabolic and associated diseases.
DETAILED DESCRIPTION OF THE INVENTION
The présent invention concerns compounds of Formula I
R4
OH or a pharmaceutically acceptable sait thereof, wherein each R1 is independently halogen, -ON, —Ci-ealkyl, or -OC-i-salkyl, wherein the alkyl of Ci-aalkyl and OCi-salkyl is substituted with 0 to 3 F atoms;
m is 0, 1, 2, or 3;
each R2 is independently F, Cl, or -CN;
p is 0, 1 or 2;
each R3 is independently F, -OH, -CN, -Ci salkyl, -OCi-salkyl, or-C3-4cycloalkyl, or 2 R3s may together cyclize to form -C3-4spirocycloalkyl, wherein the alkyl of Ci-salkyl and OCi salkyl, cycloalkyl, or spirocycloalkyl may be substituted as valency allows with 0 to 3 F atoms and with 0 to 1 -OH;
q is 0, 1, or 2;
Y is CH or N;
R4 is-Ci-salkyl, -Co salkylene-Cs-ecycloalkyl, -Co-salkylene-R5, or-Ci-salkylene-R6, wherein said alkyl may be substituted as valency allows with 0 to 3 substituents independently selected from 0 to 3 F atoms and 0 to 1 substituent selected from -Co-ialkylene-CN, -Co-ialkylene-OR°, and -N(Rn)2, and wherein said alkylene and cycloalkyl may be independently substituted as valency allows with 0 to 2 substituents independently selected from 0 to 2 F atoms and 0 to 1 substituent selected from -Co-ialkylene-CN, -Co-ialkylene-OR°, and -N(Rn)2;
R5 is a 4- to 6-membered heterocycloalkyl, wherein said heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from:
to 1 oxo (=O), to 1 -CN, to 2 F atoms, and to 2 substituents independently selected from —Ci-salkyl and -OCi salkyl, wherein the alkyl of Ci salkyl and OCi-salkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms, to 1 -CN, and to 1 -OR°;
R6 is a 5- to 6-membered heteroaryl, wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows independently selected from:
to 2 halogens, to 1 substituent selected from -OR0 and -N(Rn)2, and to 2 —Ci salkyl, wherein the alkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms, and to 1 -OR0;
each R° is independently H, or —Ci-aalkyl, wherein Ci salkyl may be substituted with 0 to 3 F atoms;
each RN is independently H, or -Ci-salkyl;
Z1 isCH or N;
Z2 and Z3 are each independently -CRZ or N, provided that when Z1 or Z3 is N, Z2 is -CRZ; and each Rz is independently H, F, Cl, or-CHa.
Another embodiment concerns compounds of Formula II
R4
II or a pharmaceutically acceptable sait thereof, wherein m is 0 or 1;
R2 is F;
p is 0, or 1; and q is 0 or 1.
Another embodiment concerns compounds of Formulas I or II, wherein m is 0 or 1 ;
q is 0 or 1 ; and
R3 is -F, -CH3, -CH2CH3, -CH2OH, -CF3, isopropyl, or cyclopropyl, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formula lll
R4
lll or a pharmaceutically acceptable sait thereof, wherein m is 0 or 1;
R2 is F;
p is 0, or 1;
R3 is -Ci-2alkyl, wherein —Ci-?alkyl may be substituted as valency allows with 0 to
F atoms; and q is 0 or 1.
Another embodiment concerns compounds of Formulas I, II, or III, wherein each R1 is independently F, Cl, -CN, -CH3, or -CFs, or a pharmaceutically acceptable sait thereof. Another embodiment concerns compounds of Formulas l, II, or III, wherein
R3 is -CH3;
q is 0 or 1 ; and
R4 is -CH2CH2OCH3, C-isalkylene-R5, or Ci-salkylene-R6, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein
R4 is -CH2-R5, wherein R5 is the 4- to 5-membered heterocycloalkyl, wherein said heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from:
to 2 F atoms, and to 1 substituent selected from -OCH3 and -CH2OCH3; or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heterocycloalkyl is
wherein the heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows, e.g., replacing hydrogen, independently selected from:
to 1 oxo (O=), to 1 -CN, to 2 F atoms, and to 2 substituents independently selected from -C-isalkyl and -OCi-salkyl, wherein the alkyl of Ci-salkyl and OCvsalkyl may be independently substituted with to 3 substituents as valency allows independently selected from:
to 3 F atoms, to 1 -CN, and to 1 -OR°, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heterocycloalkyl is
wherein the heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows, e.g., replacing hydrogen, independently selected from:
to 1 -CN, to 2 F atoms, and to 2 substituents independently selected from -Ci salkyl and -OCisalkyl, wherein the alkyl of Ci-aalkyl and OCi salkyl may be independently substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms, to 1 -CN, and to 1 -OR0, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heterocycloalkyl is
wherein the heterocycloalkyl may be substituted with 0 to 1 substituent as valency allows, e.g., replacing hydrogen, selected from:
-CN,
F atom, and to 1 substituent independently selected from —Ci salkyl and -OC-i-salkyl, wherein the alkyl of Ci-salkyl and OCi-salkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms,
O to 1 -CN, and to 1 -OR°, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or lll, wherein the heterocycloalkyl is
and wherein the heterocycloalkyl may be substituted with 0 to 1 substituent as valency allows, e.g., replacing hydrogen, selected from:
-CN,
F atom, and to 1 substituent independently selected from —Ci-oalkyl and -OCi-salkyl, wherein the alkyl of Ci salkyl and OCi-salkyl may be substituted with 0 to 3 substituents as valency allows with:
to 3 F atoms, to 1 -CN, or to 1 -OR0, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or lll, wherein the heterocycloalkyl is
and wherein the heterocycloalkyl may be substituted as valency allows with 0 to 1 methyl, wherein said methyl may be substituted with 0 to 3 F atoms, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds independently selected from one or any combination of the following:
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
ΙΟ
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[oxetan2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-{[4-(6-{[(4-cyano-2-fluorophenyl)(methyl-d2)]oxy}pyridin-2-yl)piperidin-1yl]methyl}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yI]methyI}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}pipeiïdin-1-yl)methyl]-1-[(2S)-oxetan2-ylmethyI]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)-oxetan2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3R)tetrahydrofuran-3-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3R)tetrahydrofuran-3-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3S)tetrahydrofuran-3-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)tetrahydrofuran-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)tetrahydrofuran-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(2,4-difluorobenzyl)oxy]-5-fluoropyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}1-[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1y l]methy I}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-3-[(2S)-oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-3-[(2S)-oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid; or
2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}-1[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns a compound that is 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)m ethy l]-1 -[(2S)-oxetan-2-ylmethyl]-1 Hbenzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns a compound that is 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1 Hbenzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns a compound that is 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1Hbenzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
Another embodiment is the tris sait of 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y I )m ethy I]-1 -[(2S)-oxetan-2-ylmethyl]-1 Hbenzimidazole-6-carboxylic acid.
Another embodiment is the free acid of 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1Hbenzimidazole-6-carboxylic acid.
Another embodiment concerns a compound that is 2-{[4-(6-{[(4-cyano-2fluorophenyl)(methyl-d2)]oxy}pyridin-2-yl)piperidin-1-yl]methyl}-1-[(2S)-oxetan-2ylmethyl]-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns a compound that is 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein
R4 is -CH2-R6, wherein R6 is the 5-membered heteroaryl, wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows independently selected from:
to 2 halogens, wherein the halogen is independently selected from F and Cl, to 1 -OCH3, and to 1 —CH3, -CH2CH3, -CF3, or -CH2CH2OCH3;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heteroaryl is
, or o-^
wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows, e.g., replacing hydrogen, independently selected from:
to 2 halogens, wherein the halogen is independently selected from F and Cl, to 1 substituent selected from -OR0 and -N(Rn)2, or to 2 —Ci oalkyl, wherein the alkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms, and to 1 -OR0;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heteroaryl is
wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows, e.g., replacing hydrogen, independently selected from:
to 2 halogens, wherein the halogen is independently selected from F and Cl, to 1 substituent selected from -OR° and -N(RN)2, or to 2 -Ci-3alkyl, wherein the alkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
to 3 F atoms, and to 1 -OR°;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of Formulas I, II, or III, wherein the heteroaryl is
M'N ^N-C^alkyl ^N-C1.3alkyl ^N-C^alkyl \Qj^ , or I^O wherein C1-3 alkyl on said heteroaryl may be substituted with 0 to 3 substituents as valency allows, e.g., replacing hydrogen, independently selected from:
to 3 F atoms, and to 1 -OR0;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds independently selected from one or any combination of the following:
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid; 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -[(1 methyl-1 H-1,2,3-triazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yIjmethyI}-1 -(1,3-oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid; 2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid; 2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3-oxazol2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1-ethyl-1Himidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-ch Ιο ro-2-f I uo robenzy l)oxy] py rid i n-2-y l}p i pe razi η-1 -y I )methy I]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(1ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -y l)methyl]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -y l)methy l]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3oxazol-4-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methyl]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3-oxazol5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(1ethyl-1 H-1,2,3-triazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy l]-1 -(1,2oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,2oxazol-3-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -[(1 -ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy l]-1 -[(1 ethyl-1 H-1,2,3-triazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-(1,3oxazol-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylic acid; or
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-(1,3oxazol-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds independently selected from one or any combination of the following:
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3oxazol-5-ylmethyl)-1H-benzimidazole-6-carboxylic acid; or
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-'l-(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid ;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds independently selected from one or any combination of the following:
2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-7-fluoro-1-(2methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-7-fluoro1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(2methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}-1(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyI}-1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]-5-fluoropyridin-2-yl}-2methylpiperazin-1-yl]methyl}-1-(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(2methoxyethyl)-1H-benzimidazole-6-carboxylic acid; or
2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1methoxycyclobutyl)methyl]-1H-benzimidazole-6-carboxylic;
or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein Z1, Z2, and Z3 are each CRZ, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein Rz is H, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein Z1, Z2, and Z3 are each CH, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein p is 0 or 1; and R2 is F.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein R3 is -CH3, or -CF3; and q is 1, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein each R1 is independently F, Cl, or -CN, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein R4 is -CH2-R5, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formulas I, II, or III, wherein R4 is -CH2-R6, or a pharmaceutically acceptable sait thereof.
Another embodiment concerns compounds of other embodiments herein, e.g., compounds of Formula I, II, or III, wherein the compound is the free acid.
In another embodiment, the invention provides a pharmaceutical composition comprising a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, in admixture with at least one pharmaceutically acceptable excipient.
The invention also includes the following embodiments:
a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for use as a médicament;
a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for use in the prévention and/or treatment of cardiometabolic and associated diseases discussed herein, including T2DM, pre-diabetes, NASH, and cardiovascular disease;
a method of treating a disease for which an agonist of GLP-1R is indicated, in a subject in need of such prévention and/or treatment, comprising administering to the subject a therapeutically effective amount of a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein;
the use of a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for the manufacture of a médicament for treating a disease or condition for which an agonist of the GLP-1R is indicated;
a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for use in the treatment of a disease or condition for which an agonist of GLP-1 R is indicated; or a pharmaceutical composition for the treatment of a disease or condition for which an agonist of the GLP-1 R is indicated, comprising a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein.
Every Example or pharmaceutically acceptable sait thereof may be claimed individually or grouped together in any combination with any number of each and every embodiment described herein.
The invention also relates to a pharmaceutical composition comprising a compound of Formulas I, II, or III, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for use in the treatment and/or
I9 prévention of cardiometabolic and associated diseases discussed herein, including
T2DM, pre-diabetes, NASH, and cardiovascular disease.
Another embodiment of the invention concerns a compound of Formulas I, II, or lll, or a pharmaceutically acceptable sait thereof, as defined in any of the embodiments described herein, for use in the treatment and/or treatment for cardiometabolic and associated diseases including diabètes (T1D and/or T2DM, including pre-diabetes), idiopathic T1D (Type 1b), latent autoimmune diabètes in adults (LADA), early-onset T2DM (EOD), youth-onset atypical diabètes (YOAD), maturity onset diabètes of the young (MODY), malnutrition-related diabètes, gestational diabètes, hyperglycemia, insulin résistance, hepatic insulin résistance, impaired glucose tolérance, diabetic neuropathy, diabetic nephropathy, kidney disease (e.g., acute kidney disorder, tubular dysfunction, proinflammatory changes to the proximal tubules), diabetic retinopathy, adipocyte dysfunction, viscéral adipose déposition, sleep apnea, obesity (including hypothalamic obesity and monogenic obesity) and related comorbidities (e.g., osteoarthritis and urine incontinence), eating disorders (including binge eating syndrome, bulimia nervosa, and syndromic obesity such as Prader-Willi and Bardet-Biedl syndromes), weight gain from use of other agents (e.g., from use of steroids and antipsychotics), excessive sugar craving, dyslipidemia (including hyperlipidemia, hypertriglyceridemia, increased total cholestérol, high LDL cholestérol, and low HDL cholestérol), hyperinsulinemia, NAFLD (including related diseases such as steatosis, NASH, fibrosis, cirrhosis, and hepatocellular carcinoma),cardiovascular disease, atherosclerosis (including coronary artery disease), peripheral vascular disease, hypertension, endothélial dysfunction, impaired vascular compliance, congestive heart failure, myocardial infarction (e.g. necrosis and apoptosis), stroke, hémorrhagie stroke, ischémie stroke, traumatic brain injury, pulmonary hypertension, restenosis after angioplasty, intermittent claudication, post-prandial lipemia, metabolic acidosis, ketosis, arthritis, osteoporosis, Parkinson’s Disease, left ventricular hypertrophy, peripheral arterial disease, maculardegeneration, cataract, glomerulosclerosis, chronic rénal failure, metabolic syndrome, syndrome X, premenstrual syndrome, angina pectoris, thrombosis, atherosclerosis, transient ischémie attacks, vascular restenosis, impaired glucose metabolism, conditions of impaired fasting plasma glucose, hyperuricemia, goût, erectile dysfunction, skin and connective tissue disorders, psoriasis, foot ulcérations, ulcerative colitis, hyper apo B lipoproteinemia, Alzheimer’s Disease, schizophrenia, impaired cognition, inflammatory bowel disease, short bowel syndrome, Crohn’s disease, colitis, irritable bowel syndrome, prévention or treatment of Polycystic Ovary Syndrome and treatment of addiction (e.g., alcohol and/or drug abuse).
Abbreviations used herein are as follows:
The term alkyl, as used herein, means a straight or branched chain monovalent hydrocarbon group of formula -CnH(2n+i). Non-limiting examples include methyl, ethyl, propyl, butyl, 2-methyl-propyl, 1,1-dimethylethyl, pentyl and hexyl.
The term “alkylene”, as used herein, means a straight or branched chain divalent hydrocarbon group of formula -CnHzn-. Non-limiting examples include ethylene, and propylene.
The term cycloalkyl, as used herein, means a cyclic, monovalent hydrocarbon group of formula -CnH(2n-i) containing at least three carbon atoms. Non-limiting examples include cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
The term “halogen”, as used herein, refers to fluoride, chloride, bromide, or iodide.
The term “heterocycloalkyl”, as used herein, refers to a cycloalkyl group in which one or more ofthe ring methylene groups (-CH2-) has been replaced with a group selected from -O-, -S- or nitrogen, wherein the nitrogen may provide a point of attachment or may be substituted as provided within each embodiment. Where nitrogen provides a point of attachment, a structural drawing of a heterocycloalkyl would hâve an hydrogen on said nitrogen. Generally, the heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from oxo, -CN, halogen, alkyl and -Oalkyl and the alkyl may be further substituted. One will note that when there is 0 substitution, the heterocycloalkyl is unsubstituted.
The term “heteroaryl”, as used herein, refers to a monocyclic aromatic hydrocarbon containing from 5 to 6 carbon atoms in which at least one of the ring carbon atoms has been replaced with a heteroatom selected from oxygen, nitrogen and sulfur. Such a heteroaryl group may be attached through a ring carbon atom or, where valency permits, through a ring nitrogen atom. Generally, the heteroaryl may be substituted with 0 to 2 substituents as valency allows independently selected from halogen, OH, alkyl, Oalkyl, and amino (e.g., NH2, NHalkyl, N(alkyl)2), and the alkyl may be further substituted. One will note that when there is 0 substitution, the heteroaryl is unsubstituted.
Room température: RT.
Methanol: MeOH.
Ethanol: EtOH.
Isopropanol: iPrOH.
Ethyl acetate: EtOAc.
Tetrahydrofuran: THF.
Toluene: PhCHs.
Césium carbonate: CS2CO3.
Lithium bis(trimethylsilyl)amide: LiHMDS.
Sodium t-butoxide: NaOtBu.
Potassium t-butoxide: KOtBu.
Lithium diisopropylamide: LDA.
Triethylamine: EtsN.
Ν,Ν-diisopropylethyl amine: DIPEA. Potassium carbonate: K2CO3.
Dimethyl formamide: DMF.
Dimethyl acetamide: DMAc.
Dimethyl sulfoxide: DMSO.
N-Methyl-2-pyrrolidinone: NMP.
Sodium hydride: NaH.
Trifluoroacetic acid: TFA.
Trifluoroacetic anhydride: TFAA.
Acetic anhydride: AC2O.
Dichloromethane: DCM.
1,2-Dichloroethane: DCE.
Hydrochloric acid: HCl.
1,8-Diazabicyclo[5.4.0]undec-7-ene: DBU. Borane-dimethylsulfide complex: BH3-DMS. Borane-tetrahydrofuran complex: BH3-THF. Lithium aluminum hydride: LAH.
Acetic acid: AcOH.
Acetonitrile: MeCN.
p-Toluenesulfonic acid: pTSA.
Dibenzylidine acetone: DBA.
2,2'-Bis(diphenylphosphino)-1,T-binaphthalene: BINAP.
1,1 '-Ferrocenediyl-bis(diphenylphosphine): dppf.
1,3-Bis(diphenylphosphino)propane: DPPP.
3- Chloroperbenzoic acid: m-CPBA.
Tert-Butyl methyl ether: MTBE.
Methanesulfonyl: Ms.
N-Methylpyrrolidinone: NMP.
Thin layer chromatography: TLC.
Supercritical fluid chromatography: SFC.
4- (Dimethylamino)pyridine: DMAP.
Tert-Butyloxycarbonyl: Boc.
1- [Bis(dimethylamino)methylene]-1 H-1,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate: HATU.
Petroleum ether: PE.
2- (1 H-Benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate: HBTU.
2-Amino-2-(hydroxymethyl)propane-1,3-diol: tris.
tris(dibenzylideneacetone)dipalladium: Pd2(dba)3 1H Nuclear magnetic résonance (NMR) spectra were in ail cases consistent with the proposed structures. Characteristic chemical shifts (δ) are given in parts-per-million relative to the residual proton signal in the deuterated solvent (CHCh at 7.27 ppm; CD2HOD at 3.31 ppm; MeCN at 1.94 ppm; DMSO at 2.50 ppm) and are reported using conventional abbreviations for désignation of major peaks: e.g. s, singlet; d, doublet; t, triplet; q, quartet; m, multiplet; br, broad. 1H NMR spectra were obtained with field strengths of 400 or 600 MHz if not stated.
As used herein, a wavy line,“ 7^” dénotés a point of attachment of a substituent to another group.
The compounds and intermediates described below were named using the naming convention provided with ChemBioDraw Ultra, Version 13.0 (CambridgeSoft Corp.,
Cambridge, Massachusetts) or ACD/Labs, Version 12 (Advanced Chemistry Development, Inc., Toronto, Ontario). The naming conventions provided with ChemBioDraw Ultra, Version 13.0 and ACD/Labs, Version 12 are well known by those skilled in the art and it is believed that the naming conventions provided with ChemBioDraw Ultra, Version 13.0 and ACD/Labs, Version 12 generally comporte with the IUPAC (International Union for Pure and Applied Chemistry) recommendations on Nomenclature of Organic Chemistry and the CAS Index rules. One will note that the chemical names may hâve only parenthèses or may hâve parenthèses and brackets. The stereochemical descriptors may also be placed different locations within the name itself, depending on the naming convention. One of ordinary skill in the art will recognize these formatting variations and understand they provide the same chemical structure.
Pharmaceutically acceptable salts of the compounds of Formula I include acid addition and base salts.
Suitable acid addition salts are formed from acids which form non-toxic salts. Examples include the acetate, adipate, aspartate, benzoate, besylate, bicarbonate/carbonate, bisulfate/sulfate, borate, camsylate, citrate, cyclamate, edisylate, esylate, formate, fumarate, gluceptate, gluconate, glucuronate, hexafluorophosphate, hibenzate, hydrochloride/chloride, hydrobromide/bromide, hydroiodide/iodide, isethionate, lactate, malate, maleate, malonate, mesylate, methylsulfate, naphthylate, 2napsylate, nicotinate, nitrate, orotate, oxalate, palmitate, pamoate, phosphate/hydrogen phosphate/dihydrogen phosphate, pyroglutamate, saccharate, stéarate, succinate, tannate, tartrate, tosylate, trifluoroacetate, 1,5-naphathalenedisulfonic acid and xinafoate salts.
Suitable base salts are formed from bases which form non-toxic salts. Examples include the aluminium, arginine, benzathine, calcium, choline, diethylamine, bis(2hydroxyethyl)amine (diolamine), glycine, lysine, magnésium, meglumine, 2-aminoethanol (olamine), potassium, sodium, 2-Amino-2-(hydroxymethyl)propane-1,3-diol (tris or tromethamine) and zinc salts.
Hemisalts of acids and bases may also be formed, for example, hemisulfate and hemicalcium salts. For a review on suitable salts, see Handbook of Pharmaceutical Salts: Properties, Sélection, and Use by Stahl and Wermuth (Wiley-VCH, 2002).
Pharmaceutically acceptable salts of compounds of Formula I may be prepared by one or more of three methods:
(i) by reacting the compound of Formula I with the desired acid or base;
(ii) by removing an acid- or base-labile protecting group from a suitable precursor of the compound of Formula I or by ring-opening a suitable cyclic precursor, for example, a lactone or lactam, using the desired acid or base; or (iii) by converting one sait of the compound of Formula I to another by reaction with an appropriate acid or base or by means of a suitable ion exchange column.
Ail three reactions are typically carried out in solution. The resulting sait may precipitate out and be collected by filtration or may be recovered by évaporation of the solvent. The degree of ionisation in the resulting sait may vary from completely ionised to almost non-ionised.
The compounds of Formula I, and pharmaceutically acceptable salts thereof, may exist in unsolvated and solvated forms. The term ‘solvaté’ is used herein to describe a molecular complex comprising the compound of Formula I, or a pharmaceutically acceptable sait thereof, and one or more pharmaceutically acceptable solvent molécules, for example, éthanol. The term ‘hydrate’ is employed when said solvent is water.
A currently accepted classification System for organic hydrates is one that defines isolated site, channel, or metal-ion coordinated hydrates - see Polymorphism in Pharmaceutical Solids by K. R. Morris (Ed. H. G. Brittain, Marcel Dekker, 1995). Isolated site hydrates are ones in which the water molécules are isolated from direct contact with each other by intervening organic molécules. In channel hydrates, the water molécules lie in lattice channels where they are next to other water molécules. In metal-ion coordinated hydrates, the water molécules are bonded to the métal ion.
When the solvent or water is tightly bound, the complex may hâve a well-defined stoichiometry independent of humidity. When, however, the solvent or water is weakly bound, as in channel solvatés and hygroscopic compounds, the water/solvent content may be dépendent on humidity and drying conditions. In such cases, non-stoichiometry will be the norm.
Also included within the scope of the invention are multi-component complexes (other than salts and solvatés) wherein the drug and at least one other component are présent in stoichiometric or non-stoichiometric amounts. Complexes of this type include clathrates (drug-host inclusion complexes) and co-crystals. The latter are typically defined as crystalline complexes of neutral molecular constituents which are bound together through non-covalent interactions, but could also be a complex of a neutral molécule with a sait. Co-crystals may be prepared by melt crystallisation, by recrystallisation from solvents, or by physically grinding the components together - see Chem Commun, 17, 1889-1896, by O. Almarsson and M. J. Zaworotko (2004). For a general review of multicomponent complexes, see J Pharm Sci, 64 (8), 1269-1288, by Haleblian (August 1975).
The compounds of the invention may exist in a continuum of solid states ranging from fully amorphous to fully crystalline. The term ‘amorphous’ refers to a state in which the material lacks long range order at the molecular level and, depending upon température, may exhibit the physical properties of a solid or a liquid. Typically such materials do not give distinctive X-ray diffraction patterns and, while exhibiting the properties of a solid, are more formally described as a liquid. Upon heating, a change from solid to liquid properties occurs which is characterised by a change of state, typically second order (‘glass transition’). The term ‘crystalline’ refers to a solid phase in which the material has a regular ordered internai structure at the molecular level and gives a distinctive X-ray diffraction pattern with defined peaks. Such materials when heated sufficiently will also exhibit the properties of a liquid, but the change from solid to liquid is characterised by a phase change, typically first order (‘melting point’).
The compounds of Formula I may also exist in a mesomorphic state (mesophase or liquid crystal) when subjected to suitable conditions. The mesomorphic state is intermediate between the true crystalline state and the true liquid state (either melt or solution). Mesomorphism arising as the resuit of a change in température is described as ‘thermotropic’ and that resulting from the addition of a second component, such as water or another solvent, is described as ‘lyotropic’. Compounds that hâve the potential to form lyotropic mesophases are described as ‘amphiphilic’ and consist of molécules which possess an ionic (such as -COO'Na+, -COO’K+, or -SO3'Na+) or non-ionic (such as -N' N+(CH3)s) polar head group. For more information, see Crystals and the Polarizinq Microscope by N. H. Hartshorne and A. Stuart, 4th Edition (Edward Arnold, 1970).
The compounds of Formula I may exhibit polymorphism and/or one or more kinds of isomerism (e.g. optical, géométrie or tautomeric isomerism). The compounds of Formula I may also be isotopically labelled. Such variation is implicit to the compounds of
Formula I defined as they are by reference to their structural features and therefore within the scope of the invention.
Compounds of Formula I containing one or more asymmetric carbon atoms can exist as two or more stereoisomers. Where a compound of Formula I contains an alkenyl or alkenylene group, géométrie cis/trans (or Z/E) isomers are possible. Where structural isomers are interconvertible via a low energy barrier, tautomeric isomerism (‘tautomerism’) can occur. This can take the form of proton tautomerism in compounds of Formula I containing, for example, an imino, keto, or oxime group, or so-called valence tautomerism in compounds which contain an aromatic moiety. It follows that a single compound may exhibit more than one type of isomerism.
The pharmaceutically acceptable salts of compounds of Formula I may also contain a counterion which is optically active (e.g. d-lactate or l-lysine) or racemic (e.g. dl-tartrate or dl-arginine).
Cis/trans isomers may be separated by conventional techniques well known to those skilled in the art, for example, chromatography and fractional crystallisation.
Conventional techniques for the preparation/isolation of individual enantiomers include chiral synthesis from a suitable optically pure precursor or resolution of the racemate (or the racemate of a sait or dérivative) using, for example, chiral high pressure liquid chromatography (HPLC). Alternatively, the racemate (or a racemic precursor) may be reacted with a suitable optically active compound, for example, an alcohol, or, in the case where the compound of Formula I contains an acidic or basic moiety, a base or acid such as 1 -phenylethylamine or tartaric acid. The resulting diastereomeric mixture may be separated by chromatography and/or fractional crystallization and one or both of the diastereoisomers converted to the corresponding pure enantiomer(s) by means well known to a skilled person. Chiral compounds of Formula I (and chiral precursors thereof) may be obtained in enantiomerically-enriched form using chromatography, typically HPLC, on an asymmetric resin with a mobile phase consisting of a hydrocarbon, typically heptane or hexane, containing from 0 to 50% by volume of isopropanol, typically from 2% to 20%, and from 0 to 5% by volume of an alkylamine, typically 0.1% diethylamine. Concentration of the eluate affords the enriched mixture. Chiral chromatography using sub-and supercritical fluids may be employed. Methods for chiral chromatography useful in some embodiments of the présent invention are known in the art (see, for example,
Smith, Roger M., Loughborough University, Loughborough, UK; Chromatographie
Science Sériés (1998), 75 (Supercritical Fluid Chromatography with Packed Columns), pp. 223-249 and référencés cited therein). In some relevant examples herein, columns were obtained from Chiral Technologies, Inc, West Chester, Pennsylvania, USA, a subsidiary of Daicel® Chemical Industries, Ltd., Tokyo, Japan.
When any racemate crystallises, crystals of two different types are possible. The first type is the racemic compound (true racemate) referred to above wherein one homogeneous form of crystal is produced containing both enantiomers in equimolar amounts. The second type is the racemic mixture or conglomerate wherein two forms of crystal are produced in equimolar amounts each comprising a single enantiomer. While both of the crystal forms présent in a racemic mixture hâve identical physical properties, they may hâve different physical properties compared to the true racemate. Racemic mixtures may be separated by conventional techniques known to those skilled in the art - see, for example, Stereochemistry of Organic Compounds by E. L. Eliel and S. H. Wilen (Wiley, 1994).
It must be emphasised that the compounds of Formula I hâve been drawn herein in a single tautomeric form, ail possible tautomeric forms are included within the scope of the invention.
The présent invention includes ail pharmaceutically acceptable isotopically-labeled compounds of Formula I wherein one or more atoms are replaced by atoms having the same atomic number, but an atomic mass or mass number different from the atomic mass or mass number which prédominâtes in nature.
Examples of isotopes suitable for inclusion in the compounds of the invention include isotopes of hydrogen, such as 2H and 3H, carbon, such as 11C, 13C and 14C, chlorine, such as 36CI, fluorine, such as 18F, iodine, such as 123l and 125l, nitrogen, such as 13N and 15N, oxygen, such as 15O, 17O and 18O, phosphores, such as 32P, and sulfur, such as 35S.
Certain isotopically-labelled compounds of Formula I, for example those incorporating a radioactive isotope, are useful in drug and/or substrate tissue distribution studies. The radioactive isotopes tritium, i.e. 3H, and carbon-14, i.e. 14C, are particularly useful for this purpose in view of their ease of incorporation and ready means of détection.
Substitution with heavier isotopes such as deuterium, i.e. 2H, may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life or reduced dosage requirements.
Substitution with positron emitting isotopes, such as 11C, 18F, 15O and 13N, can be useful in Positron Emission Topography (PET) studies for examining substrate receptor occupancy.
Isotopically-labeled compounds of Formula I can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying Examples and Préparations using an appropriate isotopically-labeled reagent in place of the non-labeled reagent previously employed.
Pharmaceutically acceptable solvatés in accordance with the invention include those wherein the solvent of crystallization may be isotopically substituted, e.g. D2O, deacetone, de-DMSO.
One way of carrying out the invention is to administer a compound of Formula l in the form of a prodrug. Thus, certain dérivatives of a compound of Formula I which may hâve little or no pharmacological activity themselves can, when administered into or onto the body, be converted into a compound of Formula I having the desired activity, for example by hydrolytic cleavage, particularly hydrolytic cleavage promoted by an esterase or peptidase enzyme. Such dérivatives are referred to as ‘prodrugs’. Further information on the use of prodrugs may be found in ‘Pro-drugs as Novel Delivery Systems’, Vol. 14, AGS Symposium Sériés (T. Higuchi and W. Stella) and ‘Bioreversible Carriers in Drug Design’, Pergamon Press, 1987 (Ed. E. B. Roche, American Pharmaceutical Association). Reference can also be made to Nature Reviews/Drug Discovery, 2008, 7, 355 and Current Opinion in Drug Discovery and Development, 2007, 10, 550.
Prodrugs in accordance with the invention can, for example, be produced by replacing appropriate functionalities présent in the compounds of Formula I with certain moieties known to those skilled in the art as ‘pro-moieties’ as described, for example, in ‘Design of Prodrugs’ by H. Bundgaard (Elsevier, 1985) and Y. M. Choi-Sledeski and C. G. Wermuth, ‘Designing Prodrugs and Bioprecursors’ in Practice of Médicinal Chemistry, (Fourth Edition), Chapter28, 657-696 (Elsevier, 2015).
Thus, a prodrug in accordance with the invention is (a) an ester or amide dérivative of a carboxylic acid in a compound of Formula I; (b) an ester, carbonate, carbamate, phosphate or ether dérivative of a hydroxyl group in a compound of Formula I; (c) an amide, imine, carbamate or amine dérivative of an amino group in a compound form
Formula I; (d) an oxime or imine dérivative of a carbonyl group in a compound of Formula
I; or (e) a methyl, primary alcohol or aldéhyde group that can be metabolically oxidized to a carboxylic acid in a compound of Formula I.
Some spécifie examples of prodrugs in accordance with the invention include:
(i) where the compound of Formula I contains a carboxylic acid functionality (-COOH), an ester thereof, such as a compound wherein the hydrogen of the carboxylic acid functionality of the compound of Formula I is replaced by Ci-Ce alkyl (e.g. ethyl) or (Ci-Ce alkyl)C(=O)OCH2- (e.g. ιΒυΟ(=Ο)ΟΟΗ2-);
(ii) where the compound of Formula I contains an alcohol functionality (-OH), an ester thereof, such as a compound wherein the hydrogen of the alcohol functionality of the compound of Formula I is replaced by -CO(Ci-Cs alkyl) (e.g. methylcarbonyl) or the alcohol is esterified with an amino acid;
(iii) where the compound of Formula I contains an alcohol functionality (-OH), an ether thereof, such as a compound wherein the hydrogen of the alcohol functionality of the compound of Formula I is replaced by (Ci-Ce alkyl)C(=O)OCH2- or CH2OP(=O)(OH)2;
(iv) where the compound of Formula I contains an alcohol functionality (-OH), a phosphate thereof, such as a compound wherein the hydrogen of the alcohol functionality of the compound of Formula I is replaced by -P(=O)(OH)2 or P(=O)(ONa)2 or-P(=O)(O')2Ca2+;
(v) where the compound of Formula I contains a primary or secondary amino functionality (-NH2 or -NHR where R + H), an amide thereof, for example, a compound wherein, as the case may be, one or both hydrogens of the amino functionality of the compound of Formula I is/are replaced by (Ci-Cio)alkanoyl, COCH2NH2 or the amino group is derivatised with an amino acid;
(vi) where the compound of Formula I contains a primary or secondary amino functionality (-NH2 or -NHR where R + H), an amine thereof, for example, a compound wherein, as the case may be, one or both hydrogens of the amino functionality of the compound of Formula I is/are replaced by -CH2OP(=O)(OH)2;
(vii) where the carboxylic acid group within compound of Formula I is replaced by a methyl group, a -CH2OH group or an aldéhyde group.
Certain compounds of Formula I may themselves act as prodrugs of other compounds of Formula I. It is also possible for two compounds of Formula I to be joined together in the form of a prodrug. In certain circumstances, a prodrug of a compound of Formula I may be created by internally linking two functional groups in a compound of Formula I, for instance by forming a lactone.
Référencés to compounds of Formula I are taken to include the compounds themselves and prodrugs thereof. The invention includes such compounds of Formula I as well as pharmaceutically acceptable salts of such compounds and pharmaceutically acceptable solvatés of said compounds and salts.
Administration and Dosinq
Typically, a compound ofthe invention is administered in an amount effective to treat a condition as described herein. The compounds of the invention can be administered as compound per se, or alternatively, as a pharmaceutically acceptable sait. For administration and dosing purposes, the compound per se or pharmaceutically acceptable sait thereofwill simply be referred to as the compounds ofthe invention.
The compounds of the invention are administered by any suitable route in the form of a pharmaceutical composition adapted to such a route, and in a dose effective for the treatment intended. The compounds ofthe invention may be administered orally, rectally, vaginally, parenterally, ortopically.
The compounds of the invention may be administered orally. Oral administration may involve swallowing, so that the compound enters the gastrointestinal tract, or buccal or sublingual administration may be employed by which the compound enters the bloodstream directly from the mouth.
In anotherembodiment, the compounds ofthe invention may also be administered directly into the bloodstream, into muscle, or into an internai organ. Suitable means for parentéral administration include intravenous, intraarterial, intraperitoneal, intrathecal, intraventricular, intrauréthral, intrasternal, intracranial, intramuscular and subcutaneous. Suitable devices for parentéral administration include needle (including microneedle) injectors, needle-free injectors and infusion techniques.
In another embodiment, the compounds of the invention may also be administered topically to the skin or mucosa, that is, dermally or transdermally. In another embodiment, the compounds of the invention can also be administered intranasally or by inhalation. In another embodiment, the compounds of the invention may be administered rectally or vaginally. In another embodiment, the compounds of the invention may also be administered directly to the eye or ear.
The dosage regimen for the compounds of the invention and/or compositions containing said compounds is based on a variety of factors, including the type, âge, weight, sex and medical condition ofthe patient; the severity ofthe condition; the route of administration; and the activity of the particular compound employed. Thus the dosage regimen may vary widely. In one embodiment, the total daily dose of a compound of the invention is typically from about 0.001 to about 100 mg/kg (i.e., mg compound of the invention per kg body weight) for the treatment of the indicated conditions discussed herein. In another embodiment, total daily dose ofthe compound ofthe invention is from about 0.01 to about 30 mg/kg, and in another embodiment, from about 0.03 to about 10 mg/kg, and in yet another embodiment, from about 0.1 to about 3. It is not uncommon that the administration of the compounds of the invention will be repeated a plurality of times in a day (typically no greater than 4 times). Multiple doses per day typically may be used to increase the total daily dose, if desired.
For oral administration, the compositions may be provided in the form of tablets containing 0.1, 0.5, 1.0, 2.5, 5.0, 10.0, 15.0, 25.0, 30.0 50.0, 75.0, 100, 125, 150, 175, 200, 250 and 500 milligrams of the active ingrédient for the symptomatic adjustment of the dosage to the patient. A médicament typically contains from about 0.01 mg to about 500 mg ofthe active ingrédient, or in another embodiment, from about 1 mg to about 100 mg of active ingrédient. Intravenously, doses may range from about 0.01 to about 10 mg/kg/minute during a constant rate infusion.
Suitable subjects according to the invention include mammalian subjects. In one embodiment, humans are suitable subjects. Human subjects may be of either gender and at any stage of development.
Pharmaceutical Compositions
In another embodiment, the invention comprises pharmaceutical compositions. Such pharmaceutical compositions comprise a compound ofthe invention presented with a pharmaceutically acceptable carrier. Other pharmacologically active substances can also be présent. As used herein, pharmaceutically acceptable carrier includes any and ail solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonie and absorption delaying agents, and the like that are physiologically compatible. Examples of pharmaceutically acceptable carriers include one or more of water, saline, phosphate buffered saline, dextrose, glycerol, éthanol and the like, as well as combinations thereof, and may include isotonie agents, for example, sugars, sodium chloride, or polyalcohols such as mannitol, orsorbitol in the composition. Pharmaceutically acceptable substances such as wetting agents or minor amounts of auxiliary substances such as wetting or emulsifying agents, preservatives or buffers, which enhance the shelf life or effectiveness of the antibody or antibody portion.
The compositions of this invention may be in a variety of forms. These include, for example, liquid, semi-solid and solid dosage forms, such as liquid solutions (e.g., injectable and infusible solutions), dispersions or suspensions, tablets, pills, powders, liposomes and suppositories. The form dépends on the intended mode of administration and therapeutic application.
Typical compositions are in the form of injectable or infusible solutions, such as compositions similar to those used for passive immunization of humans with antibodies in general. One mode of administration is parentéral (e.g. intravenous, subcutaneous, intraperitoneal, intramuscular). In another embodiment, the antibody is administered by intravenous infusion or injection. In yet another embodiment, the antibody is administered by intramuscular or subcutaneous injection.
Oral administration of a solid dose form may be, for example, presented in discrète units, such as hard or soft capsules, pills, cachets, lozenges, or tablets, each containing a predetermined amount of at least one compound of the invention. In another embodiment, the oral administration may be in a powder or granule form. In another embodiment, the oral dose form is sub-lingual, such as, for example, a lozenge. In such solid dosage forms, the compounds of Formula I are ordinarily combined with one or more adjuvants. Such capsules or tablets may contain a controlled release formulation. In the case of capsules, tablets, and pills, the dosage forms also may comprise buffering agents or may be prepared with enteric coatings.
In another embodiment, oral administration may be in a liquid dose form. Liquid dosage forms for oral administration include, for example, pharmaceutically acceptable émulsions, solutions, suspensions, syrups, and élixirs containing inert diluents commonly used in the art (e.g., water). Such compositions also may comprise adjuvants, such as wetting, emulsifying, suspending, flavoring (e.g., sweetening), and/or perfuming agents.
In another embodiment, the invention comprises a parentéral dose form. Parentéral administration includes, for example, subcutaneous injections, intravenous injections, intraperitoneally, intramuscular injections, intrasternal injections, and infusion. Injectable préparations (i.e., stérile injectable aqueous or oleaginous suspensions) may be formulated according to the known art using suitable dispersing, wetting agents, and/or suspending agents.
In another embodiment, the invention comprises a topical dose form. Topical administration includes, for example, transdermal administration, such as via transdermal patches or iontophoresis devices, intraocular administration, or intranasal or inhalation administration. Compositions for topical administration also include, for example, topical gels, sprays, ointments, and creams. A topical formulation may include a compound which enhances absorption or pénétration of the active ingrédient through the skin or other affected areas. When the compounds of this invention are administered by a transdermal device, administration will be accomplished using a patch either of the réservoir and porous membrane type or of a solid matrix variety. Typical formulations for this purpose include gels, hydrogels, lotions, solutions, creams, ointments, dusting powders, dressings, foams, films, skin patches, wafers, implants, sponges, fibres, bandages and microemulsions. Liposomes may also be used. Typical carriers include alcohol, water, minerai oil, liquid petrolatum, white petrolatum, glycerin, polyethylene glycol and propylene glycol. Pénétration enhancers may be incorporated - see, for example, B. C. Finnin and T. M. Morgan, J. Pharm. Sci., vol. 88, pp. 955-958, 1999.
Formulations suitable for topical administration to the eye include, for example, eye drops wherein the compound of this invention is dissolved or suspended in a suitable carrier. A typical formulation suitable for ocular or aurai administration may be in the form of drops of a micronized suspension or solution in isotonie, pH-adjusted, stérile saline. Other formulations suitable for ocular and aurai administration include ointments, biodégradable (i.e., absorbable gel sponges, collagen) and non-biodegradable (i.e., silicone) implants, wafers, lenses and particulate or vesicular Systems, such as niosomes or liposomes. A polymer such as crossed linked polyacrylic acid, polyvinyl alcohol, hyaluronic acid, a cellulosic polymer, for example, hydroxypropylmethylcellulose, hydroxyethylcellulose, or methylcellulose, or a heteropolysaccharide polymer, for example, gelan gum, may be incorporated together with a preservative, such as benzalkonium chloride. Such formulations may also be delivered by iontophoresis.
For intranasal administration or administration by inhalation, the compounds of the invention are conveniently delivered in the form of a solution or suspension from a pump spray container that is squeezed or pumped by the patient or as an aérosol spray présentation from a pressurized container or a nebulizer, with the use of a suitable propellant. Formulations suitable for intranasal administration are typically administered in the form of a dry powder (either alone, as a mixture, for example, in a dry blend with lactose, or as a mixed component particle, for example, mixed with phospholipids, such as phosphatidylcholine) from a dry powder inhaler or as an aérosol spray from a pressurized container, pump, spray, atomizer (preferably an atomizer using electrohydrodynamics to produce a fine mist), or nebulizer, with or without the use of a suitable propellant, such as 1,1,1,2-tetrafluoroethane or 1,1,1,2,3,3,3heptafluoropropane. For intranasal use, the powder may comprise a bioadhesive agent, for example, chitosan or cyclodextrin.
In another embodiment, the invention comprises a rectal dose form. Such rectal dose form may be in the form of, for example, a suppository. Cocoa butter is a traditional suppository base, but various alternatives may be used as appropriate.
Other carrier materials and modes of administration known in the pharmaceutical art may also be used. Pharmaceutical compositions ofthe invention may be prepared by any of the well-known techniques of pharmacy, such as effective formulation and administration procedures. The above considérations in regard to effective formulations and administration procedures are well known in the art and are described in standard textbooks. Formulation of drugs is discussed in, for example, Hoover, John E., Remington’s Pharmaceutical Sciences, Mack Publishing Co., Easton, Pennsylvania, 1975; Liberman et al., Eds., Pharmaceutical Dosage Forms, Marcel Decker, New York, N.Y., 1980; and Kibbe et al., Eds., Handbook of Pharmaceutical Excipients (3rd Ed.), American Pharmaceutical Association, Washington, 1999.
Co-administration
The compounds of the invention can be used alone, or in combination with other therapeutic agents. The invention provides any of the uses, methods or compositions as defined herein wherein the compound of any embodiment of Formula I herein, or pharmaceutically acceptable sait thereof, or pharmaceutically acceptable solvaté of said compound or sait, is used in combination with one or more other therapeutic agent discussed herein.
The administration of two or more compounds “in combination” means that ail of the compounds are administered closely enough in time that each may generate a biological effect in the same time frame. The presence of one agent may alter the biological effects of the other compound(s). The two or more compounds may be administered simultaneously, concurrently or sequentially. Additionally, simultaneous administration may be carried out by mixing the compounds prior to administration or by administering the compounds at the same point in time but as separate dosage forms at the same or different site of administration.
The phrases “concurrent administration,” “co-administration,” “simultaneous administration,” and “administered simultaneously” mean that the compounds are administered in combination.
In another embodiment, the invention provides methods of treatment that include administering compounds of the présent invention in combination with one or more other pharmaceutical agents, wherein the one or more other pharmaceutical agents may be selected from the agents discussed herein.
In one embodiment, the compounds of this invention are administered with an antidiabetic agent including but not limited to a biguanide (e.g., metformin), a sulfonylurea (e.g., tolbutamide, glibenclamide, gliclazide, chlorpropamide, tolazamide, acetohexamide,glyclopyramide, glimepiride, or glipizide), a thiazolidinedione (e.g., pioglitazone, rosiglitazone, or lobeglitazone), a glitazar (e.g., saroglitazar, aleglitazar, muraglitazar or tesaglitazar), a meglitinide (e.g., nateglinide, repaglinide), a dipeptidyl peptidase 4 (DPP-4) inhibitor (e.g., sitagliptin, vildagliptin, saxagliptin, linagliptin, gemigliptin, anagliptin, teneligliptin, alogliptin, trelagliptin, dutogliptin, or omarigliptin), a glitazone (e.g., pioglitazone, rosiglitazone, balaglitazone, rivoglitazone, or lobeglitazone), a sodium-glucose linked transporter 2 (SGLT2) inhibitor (e.g., empagliflozin, canagliflozin, dapagliflozin, ipragliflozin, Ipragliflozin, tofogliflozin, sergliflozin etabonate, remogliflozin etabonate, orertugliflozin), an SGLTL1 inhibitor, a GPR40 agonist (FFAR1/FFA1 agonist, e.g. fasiglifam), glucose-dependent insulinotropic peptide (GIP) and analogues thereof, an alpha glucosidase inhibitor (e.g. voglibose, acarbose, or miglitol), or an insulin or an insulin analogue, including the pharmaceutically acceptable salts of the specifically named agents and the pharmaceutically acceptable solvatés of said agents and salts.
In another embodiment, the compounds of this invention are administered with an anti-obesity agent including but not limited to peptide YY or an analogue thereof, a neuropeptide Y receptor type 2 (NPYR2) agonist, a NPYR1 or NPYR5 antagonist, a cannabinoid receptor type 1 (CB1R) antagonist, a lipase inhibitor (e.g., orlistat), a human proislet peptide (HIP), a melanocortin receptor 4 agonist (e.g., setmelanotide), a melanin concentrating hormone receptor 1 antagonist, a farnesoid X receptor (FXR) agonist (e.g. obeticholic acid), zonisamide, phentermine (alone or in combination with topiramate), a norepinephrine/dopamine reuptake inhibitor (e.g., buproprion), an opioid receptor antagonist (e.g., naltrexone), a combination of norepinephrine/dopamine reuptake inhibitor and opioid receptor antagonist (e.g., a combination of bupropion and naltrexone), a GDF-15 analog, sibutramine, a cholecystokinin agonist, amylin and analogues therof (e.g., pramlintide), leptin and analogues thereof (e.g., metroleptin), a serotonergic agent (e.g., lorcaserin), a méthionine aminopeptidase 2 (MetAP2) inhibitor (e.g., beloranib or ZGN-1061), phendimetrazine, diethylpropion, benzphetamine, an SGLT2 inhibitor (e.g., empagliflozin, canagliflozin, dapagliflozin, ipragliflozin, Ipragliflozin, tofogliflozin, sergliflozin etabonate, remogliflozin etabonate, or ertugliflozin), an SGLTL1 inhibitor, a dual SGLT2/SGLT1 inhibitor, a fibroblast growth factor receptor (FGFR) modulator, an AMP-activated protein kinase (AMPK) activator, biotin, a MAS receptor modulator, or a glucagon receptor agonist (alone or in combination with another GLP-1R agonist, e.g., liraglutide, exenatide, dulaglutide, albiglutide, lixisenatide, or semaglutide), including the pharmaceutically acceptable salts of the specifically named agents and the pharmaceutically acceptable solvatés of said agents and salts.
In another embodiment, the compounds of this invention are administered with an agent to treat NASH including but not limited to PF-05221304, an FXR agonist (e.g., obeticholic acid), a PPAR α/δ agonist (e.g., elafibranor), a synthetic fatty acid-bile acid conjugate (e.g., aramchol), a caspase inhibitor (e.g., emricasan), an anti-lysyl oxidase homologue 2 (LOXL2) monoclonal antibody (e.g., simtuzumab), a galectin 3 inhibitor (e.g., GR-MD-02), a MAPK5 inhibitor (e.g., GS-4997), a dual antagonist of chemokine receptor 2 (CCR2) and CCR5 (e.g., cenicriviroc), a fibroblast growth factor 21 (FGF21) agonist (e.g., BMS-986036), a leukotriene D4 (LTD4) receptor antagonist (e.g., tipelukast), a niacin analogue (e.g., ARI 3037MO), an ASBT inhibitor (e.g., volixibat), an acetyl-CoA carboxylase (ACC) inhibitor (e.g., NDI 010976), a ketohexokinase (KHK) inhibitor, a diacylglyceryl acyltransferase 2 (DGAT2) inhibitor, a CB1 receptor antagonist, an anti-CB1R antibody, or an apoptosis signal-regulating kinase 1 (ASK1) inhibitor, including the pharmaceutically acceptable salts of the specifically named agents and the pharmaceutically acceptable solvatés of said agents and salts.
These agents and compounds of the invention can be combined with pharmaceutically acceptable vehicles such as saline, Ringer’s solution, dextrose solution, and the like. The particular dosage regimen, i.e., dose, timing and répétition, will dépend on the particular individual and that individual’s medical history.
Acceptable carriers, excipients, or stabilizers are nontoxic to récipients at the dosages and concentrations employed, and may comprise buffers such as phosphate, citrate, and other organic acids; salts such as sodium chloride; antioxidants including ascorbic acid and méthionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexaméthonium chloride; benzalkonium chloride, benzéthonium chloride; phénol, butyl or benzyl alcohol; alkyl parabens, such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptides; proteins, such as sérum album in, gelatin, or Igs; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides, and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose orsorbitol; salt-forming counter-ions such as sodium; métal complexes (e.g., Zn-protein complexes); and/or non-ionic surfactants such as TWEEN™, PLURONICS™ or polyethylene glycol (PEG).
Liposomes containing these agents and/or compounds of the invention are prepared by methods known in the art, such as described in U.S. Pat. Nos. 4,485,045 and 4,544,545. Liposomes with enhanced circulation time are disclosed in U.S. Patent
No. 5,013,556. Particularly useful liposomes can be generated by the reverse phase évaporation method with a lipid composition comprising phosphatidylcholine, cholestérol and PEG-derivatized phosphatidylethanolamine (PEG-PE). Liposomes are extruded through filters of defined pore size to yield liposomes with the desired diameter.
These agents and/or the compounds of the invention may also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly(methylmethacrylate) microcapsules, respectively, in colloïdal drug delivery Systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions. Such techniques are disclosed in Remington, The Science and Practice of Pharmacy, 20th Ed., Mack Publishing (2000).
Sustained-release préparations may be used. Suitable examples of sustainedrelease préparations include semi-permeable matrices of solid hydrophobie polymers containing the compound of Formulas I, II, or III, which matrices are in the form of shaped articles, e.g., films, or microcapsules. Examples of sustained-release matrices include polyesters, hydrogels (for example, poly(2-hydroxyethyl-methacrylate), or 'poly(vinylalcohol)), polylactides (U.S. Pat. No. 3,773,919), copolymers of L-glutamic acid and 7 ethyl-L-glutamate, non-degradable ethylene-vinyl acetate, degradable lactic acidglycolic acid copolymers such as those used in LUPRON DEPOT™ (injectable microspheres composed of lactic acid-glycolic acid copolymer and leuprolide acetate), sucrose acetate isobutyrate, and poly-D-(-)-3-hydroxybutyric acid.
The formulations to be used for intravenous administration must be stérile. This is readily accomplished by, for example, filtration through stérile filtration membranes. Compounds of the invention are generally placed into a container having a stérile access port, for example, an intravenous solution bag or vial having a stopper pierceable by a hypodermic injection needle.
Suitable émulsions may be prepared using commercially available fat émulsions, such as Intralipid™, Liposyn™, Infonutrol™, Lipofundin™ and Lipiphysan™. The active ingrédient may be either dissolved in a pre-mixed émulsion composition or alternative^ it may be dissolved in an oil (e.g., soybean oil, safflower oil, cottonseed oil, sesame oil, corn oil or almond oil) and an émulsion formed upon mixing with a phospholipid (e.g., egg phospholipids, soybean phospholipids or soybean lecithin) and water. It will be appreciated that other ingrédients may be added, for example glycerol or glucose, to adjust the tonicity of the émulsion. Suitable émulsions will typically contain up to 20% oil, for example, between 5 and 20%. The fat émulsion can comprise fat droplets between
0.1 and 1.0 pm, particularly 0.1 and 0.5 pm, and hâve a pH in the range of 5.5 to 8.0.
The émulsion compositions can be those prepared by mixing a compound of the invention with Intralipid™ or the components thereof (soybean oil, egg phospholipids, glycerol and water).
Compositions for inhalation or insufflation include solutions and suspensions in pharmaceutically acceptable, aqueous or organic solvents, or mixtures thereof, and powders. The liquid or solid compositions may contain suitable pharmaceutically acceptable excipients as set out above. In some embodiments, the compositions are administered by the oral or nasal respiratory route for local or systemic effect. Compositions in preferably stérile pharmaceutically acceptable solvents may be nebulised by use of gases. Nebulised solutions may be breathed directly from the nebulising device or the nebulising device may be attached to a face mask, tent or intermittent positive pressure breathing machine. Solution, suspension or powder compositions may be administered, preferably orally or nasally, from devices which deliverthe formulation in an appropriate manner.
Kits
Another aspect of the invention provides kits comprising the compound of Formulas I, II, or III or pharmaceutical compositions comprising the compound of Formulas I, II, or III of the invention. A kit may include, in addition to the compound of Formulas I, II, or III, of the invention or pharmaceutical composition thereof, diagnostic or therapeutic agents. A kit may also include instructions for use in a diagnostic or therapeutic method. In some embodiments, the kit includes the compound of Formulas I, II, or III, or a pharmaceutical composition thereof and a diagnostic agent. In other embodiments, the kit includes the compound of Formulas I, II, or III, or a pharmaceutical composition thereof.
In yet another embodiment, the invention comprises kits that are suitable for use in performing the methods of treatment described herein. In one embodiment, the kit contains a first dosage form comprising one or more of the compounds of the invention in quantifies sufficient to carry out the methods of the invention. In another embodiment, the kit comprises one or more compounds ofthe invention in quantifies sufficient to carry out the methods of the invention and a container for the dosage and a container for the dosage.
PREPARATION
The compounds of Formulas I, II, or III, may be prepared by the general and spécifie methods described below, using the common general knowledge of one skilled in the art of synthetic organic chemistry. Such common general knowledge can be found in standard reference books such as Comprehensive Organic Chemistry, Ed. Barton and Ollis, Elsevier; Comprehensive Organic Transformations: A Guide to Functional Group Préparations, Larock, John Wiley and Sons; and Compendium of Organic Synthetic Methods, Vol. I-XII (published by Wiley-lnterscience). The starting materials used herein are commercially available or may be prepared by routine methods known in the art.
In the préparation of the compounds of Formulas I, II, or III, it is noted that some of the préparation methods described herein may require protection of remote functionality (e.g., primary amine, secondary amine, carboxyl in Formula I precursors). The need for such protection will vary depending on the nature of the remote functionality and the conditions of the préparation methods. The need for such protection is readily determined by one skilled in the art. The use of such protection/deprotection methods is also within the skill in the art. For a general description of protecting groups and their use, see T.W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York, 1991.
For example, certain compounds contain primary amines or carboxylic acid functionalities which may interfère with reactions at other sites of the molécule if left unprotected. Accordingly, such functionalities may be protected by an appropriate protecting group which may be removed in a subséquent step. Suitable protecting groups for amine and carboxylic acid protection include those protecting groups commonly used in peptide synthesis (such as N-t-butoxycarbonyl (Boc), benzyloxycarbonyl (Cbz), and 9fluorenylmethylenoxycarbonyl (Fmoc) for amines and lower alkyl or benzyl esters for carboxylic acids) which are generally not chemically reactive under the reaction conditions described and can typically be removed without chemically altering other functionality in the Formula I compounds.
The Schemes described below are intended to provide a general description of the methodology employed in the préparation of the compounds of the présent invention. Some of the compounds of the présent invention may contain single or multiple chiral centers with the stereochemical désignation (R) or (S). It will be apparent to one skilled in the art that ail of the synthetic transformations can be conducted in a similar manner whether the materials are enantioenriched or racemic. Moreover the resolution to the desired optically active material may take place at any desired point in the sequence using well known methods such as described herein and in the chemistry literature.
In the Schemes that follow, the variables Y, Z1, Z2, Z3, R1, R2, R3, R4, m, p, and q are as described herein for compounds of Formulas I, II, or III unless otherwise noted. For the Schemes provided below, each X1, X2, X3, and X4 can independently be a leaving group such as any alkyl or aryl sulfonate (e.g., mesylate, tosylate, or triflate), or a halogen or any other group that can be displaced by an amine or utilized in a métal mediated coupling reaction. X4 may also be a protected carboxylic acid (i.e., ester). When the protecting group is identified as Pg1, it can be an alkyl amine protecting group such as benzyl, benzhydryl, or the like; a carbamate protecting group such as Boc, Cbz, or the like; or an amide protecting group such trifluoroacetamide. When the protecting group is identified as Pg2, it can be acid protecting group such as methyl, ethyl, benzyl, t-butyl or the like. R4a is Ci-zalkyl, Co-2alkylene-C3-6cycloalkyl, Co-2alkylene-R5, or Ci-2alkylene-R6, wherein said alkyl, alkylene, or cycloalkyl may be independently substituted as valency allows with 0 to 3 F atoms and 0 to 1 substituent independently selected from Coialkylene-OR° and -N(Rn)2.
The substituted pyridine 6 may be prepared as discussed in Scheme 1. A 2,6dihalopyridine (1, synthesized or purchased commercially) can be reacted with a substituted boronic acid or boronate ester (2) in the presence of a palladium catalyst and ligand complex in the manner of a Suzuki reaction (Maluenda and Navarro, Molécules, 2015, 20, 7528-7557) to provide compounds ofthe general formula 3. For best results in the Suzuki reaction, the X2 halogen is preferably Cl, Br or I. Réduction of the olefin to provide compounds of general structure 4 would be performed under an atmosphère of hydrogen (15-100 psi H2) in an alcoholic solvent such as MeOH or EtOH or alternatively an aprotic organic solvent such as EtOAc or THF in the presence of an appropriate catalyst such as palladium on carbon, Pd(OH)2 on carbon (Pearlman’s catalyst) or PtÛ2 (Adams catalyst). Alternatively, the réduction may be accomplished by alternative methods know to those skilled in the art using reagents such as triethyl silane or other silanes, under acid or metallic catalysis, or metallic reductants, such as magnésium or similar. Alternatively, the olefin can be functionalized by methods known to one skilled in the art to introduce R3 groups. For example, the olefin could be hydroborated to produce an alcohol that could be alkylated or further converted to a nitrile, F or alkyl group. Conversion to compounds of general structure 5 can be accomplished by such manner as a Buchwald-Hartwig C-0 coupling (Lundgren and Stradiotto, Aldrich Chimica Acta, 2012, 45, 59-65) between compounds of the general structure 4 and an appropriately substituted benzyl alcohol in the presence of a palladium or copper catalyst and ligand complex. A preferred X1 halogen is Cl. These reactions are generally performed between 0 and 110 °C in aprotic organic solvents such as but not limited to 1,4-dioxane and PhCHs with added base such as CS2CO3, LiHMDS or NaOtBu. Alternatively, reaction of 4 with an appropriately substituted benzyl alcohol in an aprotic solvent such as DMF or THF in the presence of a strong base such as NaH, KOtBu or LiHMDS can deliver compounds of the general structure 5. Preferred X1 substituents for this reaction include F and Cl or sulfones (e.g. SÜ2Me). Removal of Pg1 could be effected with many methods described in literature to provide amines 6.
Scheme 1
Pg1 2
Alternatively, as shown in Scheme 2, appropriately substituted piperidine esters of general structure 7 can be reacted with 1 in the presence of strong base such as LiHMDS or LDA or other suitable base in an aprotic organic solvent such as THF to deliver compounds ofthe general structure 8. For best results in préparation of compounds such as 8, X2 is preferably F or Cl. Removal of Pg2 through ester hydrolysis to deliver carboxylic acids 9 can be performed in a traditional manner such as aqueous lithium, sodium or potassium hydroxide in a water miscible solvent such as MeOH, EtOH, THF or the like. Subjecting carboxylic acids 9 to heat (60-120 °C) in an appropriate solvent such as DCE or PhCHs will resuit in décarboxylation to deliver compounds of general formula for use as described in Scheme 1 to obtain amines 6.
Scheme 2
Scheme 3 provides an alternative préparation of compounds 5. Reaction of 1 with an appropriately substituted benzyl alcohol in an aprotic solvent such as DMF or THF in the presence of a strong base such as NaH, KOtBu or LiHMDS can deliver compounds of the general structure 10. Preferred X1 substituents for this reaction include F and Cl, while X2 substituents may include Cl, Br or I. Alternatively, Buchwald-Hartwig C-O coupling conditions similar to the préparation of 5 may be used to préparé 10 with preferred X1 substituents Cl, Br or I. Suzuki reaction conditions similar to the préparation of general structure 3 may be used to préparé compounds of general structure 11 from
10. Preferred X2 substituents for use in the coupling include Cl, Br or I. The olefin may be reduced via methods previously described in Scheme 1 to deliver compounds of general structure 5 that are then used to obtain amines 6.
Scheme 3
As provided in Scheme 4, conversion of 10 to compounds of general structure 12 can be accomplished by such manner as a Buchwald-Hartwig C-N coupling between compounds of the general structure 10 and an appropriately substituted and protected piperazine in the presence of a palladium or copper catalyst and ligand complex. Preferred X2 substituents for use in the coupling include Cl, Br or I. These reactions are generally performed between 0 and 110 °C in aprotic organic solvents such as but not limited to 1,4-dioxane and PhCHs with added base such as CS2CO3, LiHMDS or NaOtBu. Removal of Pg1 could be effected with many methods described in literature to provide amines 13.
Scheme 4
Compounds of the structure 14 (Scheme 5) may be converted to compounds of the general structure 15 through methods described previously in Scheme 1 or Scheme
2. Preferred X2 substituents for use in the coupling include Cl, Br or I. Conversion of 10 intermediates 15 into their respective A/-oxides 16 can be performed with oxidants such as 3-chloroperoxybenzoic acid, Oxone® or other suitable oxidant. Rearrangement to compounds of structure 17 can be affected by treatment with an organic acid anhydride such as AC2O or TFAA in aprotic solvents with an appropriate organic amine base such as EtsN, DI PEA or other suitable base. Préparation of benzyl ethers of general structure 15 18 can be achieved by standard alkylation methods with appropriately substituted benzyl bromides or through standard Mitsunobu alkylation protocols (Swamy et al., Chem. Rev. 2009, 109, 2551-2651) with appropriately substituted benzyl alcohols. Removal of Pg1 could be effected by many methods described in literature to provide amines 19.
Scheme 5
Compound 20 (Scheme 6) can be reacted with an appropriately substituted and protected piperazine in the presence of a suitable base such as CS2CO3, K2CO3, NaH or 5 LiHMDS or organic base such as EtsN, DIPEA or DBU in a polar aprotic solvent such as but not limited to DMF, DMAc, DMSO or NMP to deliver compounds of the general structure 21. Preferred X1 and X2 substituents for use in the coupling include F and Cl; F is most preferred. Benzyl ethers 22 can be prepared analogously to compounds 10 in Scheme 3. Alternatively, by performing the above steps in reverse order, compounds of 10 the general structure 25 can be prepared from the same starting material 20. Removal of Pg1 could be effected by many methods described in the literature to provide amines 23 and 26.
Scheme 6
25
Amine compounds prepared via methods described in Schemes 1-6, collectively 5 designated as amines 27, can be alkylated with a protected 2-bromoacetate in the presence of a suitable base such as K2CO3, EtsN, NaH or LiHMDS in a polar aprotic solvent such as but not limited to DMF, DMAc, DMSO or NMP to deliver compounds of the general structure 28. Standard ester hydrolysis can be performed to provide acids 29. If Pg2 is t-butyl, standard acidic deprotection methods such as TFA/DCM, HCI/1,410 dioxane, HCI/EtOAc or other suitable conditions may be used to deliver acids 29.
Scheme 7
Compounds of general structure 30 (Scheme 8) can react with amines R4NH2 in the presence of bases such as sodium-, potassium-, or césium carbonate, -bicarbonate, hydroxide, acetate, or an organic amine base such as EtsN, DIPEA, DBU, and the like in a polar aprotic solvent such as but not limited to THF, DMF, DMAc, DMSO or NMP or a protic solvent such as water, MeOH, EtOH or iPrOH or a mixture thereof to deliver compounds of the general structure 31. One will note that if an example provides an R4 with a resolved enantiomeric center, the other enantiomer or a racemix mixture thereof could be obtained by sélection of the appropriate starting matériel. Preferred X3 substituents include F, Cl, and Br, preferred X4 groups include Cl, Br, -CO2-Pg2 Réduction of the nitro group can be affected by hydrogénation at 1-6 atm H2 with a métal catalyst such as palladium on carbon or Raney nickel in a protic solvent such as MeOH or EtOH or aprotic solvent such as DMF, THF or EtOAc. Alternative^, the nitro group may be reduced with iron, zinc, SnCh or other suitable métal in an acidic media such as 1N HCl, AcOH or aqueous NH4CI in THF to provide compounds of general structure 32 (Scheme 8a). Compounds such as 33 may be acylated by acyl halides by standard fashion or by carboxylates via standard amide coupling protocols to provide compounds 34. Réduction to compounds 35 may be performed under standard conditions with reducing agents such as LAH or BH3-THF or BH3-DMS (Scheme 8b).
Scheme 8
Diamine compounds 32 and 35 prepared via methods described in Schemes 8a and 8b, collectively designated as diamine 37 (Scheme 9), may be acylated with acids of general structure 29 under standard amide coupling protocols to deliver amines 38 which will exist as a mixture from 100% 38a to 100% 38b. This mixture of amines 38 may be cyclized to deliver compounds of general structure 39 by a variety of methods. Amines 38 may be heated with a dehydrating agent such as T3P® or an alkyl alcohol such as nbutanol under microwave conditions (10-60 min at 120-180 °C) to deliver compounds 39. Alternatively, the mixture of compounds 38 may be heated under acidic conditions such as AcOH from 60-100 °C or under basic conditions such as aqueous NaOH or KOH in
1,4-dioxane from 60-100 °C to provide 39. Compounds of general structure 39 (X4 = Cl, Br or I) can be converted to esters of structure 40 by palladium-catalyzed carbonylation under a 15-100 psi carbon monoxide atmosphère at a température from 20-100 at a température from 20-100 °C with an appropriate alcohol such as MeOH or EtOH or other alkyl alcohol. Hydrolysis of ester 40 can be performed as described in Scheme 7 to provide acids 41. For compounds 38 where X4 = CO2-Pg2 conversion to ester 40 proceeds under similar conditions as described previously except for use of the basic cyclization method where compound 41 may be isolated directly from the reaction mixture. For compounds 40 where X4 is CO2tBu, deprotection to acid 41 can be performed under acidic conditions described in Scheme 7.
Scheme 9
Additionally, diamine 37 may be converted to the 2-chloromethyl benzimidazole 42 (Scheme 10) by several methods. Treatment with 2-chloroacetyl chloride in an aprotic 5 solvent such as 1,4-dioxane followed by heating at 40-100 °C for 2-18 h can deliver the desired benzimidazole 42 where Z1, Z2 and Z3 are CH. In the cases where Z1, Z2 and Z3 are not ail CRZ, after treatment with 2-chloroacetyl chloride in an aprotic solvent such as
1,4-dioxane for 30 min to 4 h, the solvent is exchanged for an acidic media such as AcOH or TFA followed by heating at 40-100 °C for 2-18 h to provide the desired compound 42. Diamine 37 can also be treated with chloroacetic anhydride at a température between 0 and 80 °C in an aprotic solvent such as, but not limited to 1,4-dioxane, THF or MeCN, followed by heating for 2 to 18 h at 60-100 °C to deliver the desired compound 42. In addition, diamine 37 can be treated with 2-chloro-1,1,1-trimethoxyethane in an aprotic solvent such as, but not limited to 1,4-dioxane, THF or MeCN, or a protic solvent, e.g., MeOH or EtOH, in the presence of an acid catalyst, e.g., pTSA, at 20-100 °C. Alternatively, diamines 37 may be heated 100-180 °C with 2-hydroxyacetic acid in an aprotic solvent, such as but not limited to mesitylene, to provide a hydroxymethyl intermediate. Conversion of the hydroxymethyl group to the chloromethyl compound 42 may be accomplished by standard methods, including treatment with SOCI2 in an aprotic solvent. Compounds of general structure 42 can be reacted with compounds 27 in the presence of bases such as sodium-, potassium-, or césium carbonate, -bicarbonate, NaH or an organic amine base such as EtsN, DIPEA, DBU, and the like in a polar aprotic solvent, such as but not limited to THF, MeCN, DMF, DMAc, DMSO or NMP, to deliver compounds 39 (X4 = Cl, Br, I) or compounds 40 (X4 = CO2-Pg2) that are then used to obtain compounds 41 via methods described in Scheme 9.
Scheme 10
R4 N Z?, X427
---- /—<\ JJ X ---------- 40 *
Cl N^zlZ X4 = CO2-Pg2 ..
----------►39
X4 = Cl, Br, I
Alternatively, compounds of general structure 42 can be reacted with appropriately substituted and protected piperazines to provide compounds 43 (Scheme 11). Removal of Pg1 could be effected with many methods described in literature to provide amines 44. Conversion to compounds of general structure 39 (X4 = Cl, Br or I) or 40 (X4 = CO2-Pg2) can be accomplished by such manner as a Buchwald-Hartwig C-N coupling between compounds of the general structures 10 and as described previously in Scheme 4.
Compounds of general structure 39 or 40 can then be used to obtain compounds of structure 41 via methods described in Scheme 9.
Scheme 11
R4
Examples
Intermediate 1 tert-Butyl 6-chloro-3',6'-dihydro-[2,4'-bipyridine]-1'(2'H)-carboxylate
A reaction vessel equipped with a reflux condenser was charged with of tert-butyl 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydropyridine-1(2H)-carboxylate (1.5 g, 4.9 mmol), 2,6-dichloropyridine (1.4 g, 9.7 mmol), Pd(dppf)Cl2 (0.34 g, 0.49 mmol), and césium carbonate (3.5 g, 11 mmol). A sparged solution of 1,4-dioxane (15 mL) and water (3 mL) was added and the mixture was heated to 90 °C under N2 (g). After 7 h, the mixture was allowed to cool to RT and filtered through a pad of Celite® with EtOAc (50 mL). The mixture was diluted with water (20 mL), the aq. layer was extracted with EtOAc (3 x 50 mL), and the combined organic layers were dried over anhydrous Na2SO4, filtered, and the solvent removed under reduced pressure. The crude material was purified using column chromatography eluting with 10% EtOAc in heptane to obtain Intermediate 1 as a colorless oil (1.1 g, 75%). 1H NMR (CDCh) δ: 7.57 (t, 1H), 7.23 (d, 1H), 7.14 (d, 1H), 6.66 (br s, 1 H), 4.11 (br s, 2H), 3.61 (br s, 2H), 2.57 (br s, 2H), 1.43-1.52 (m, 9H).
Intermediate 2 tert-ButyI 4-(6-chloropyridin-2-yl)piperidine-1 -carboxylate
To a stirred solution of Intermediate 1 (0.55 g, 1.9 mmol) in MeOH (19 mL) was added PtO2 (0.042 g, 0.19 mmol). The solution was subject to a hydrogen atmosphère (30 PSI) at RT. After 3 h, the solution was filtered through a Celite® plug, washed with MeOH (2x15 mL) and concentrated under reduced pressure. The crude material was purified using column chromatography eluting with 30% EtOAc in heptane to obtain Intermediate 2 (0.22 g, 40%) as a colorless oil. 1H NMR (CDCh) δ: 7.57 (t, 1H), 7.15 (d, 1 H), 7.05 (d, 1 H), 4.23 (br s, 2H), 2.80 (d, 3H), 1.89 (d, 2H), 1.60-1.73 (m, 2H), 1.45 (s, 9H).
Intermediate 3
2-((4-Chloro-2-fluorobenzyl)oxy)-6-(piperidin-4-yl)pyridine bis(4methylbenzenesulfonate)
Step 1
A reaction vessel equipped with a reflux condenser was charged with Intermediate 2 (6.5 g, 22 mmol), (4-chloro-2-fluorophenyl)methanol (3.5 g, 22 mmol), Pd2(dba)3 (1.0 g,
1.1 mmol), BINAP (1.4 g, 2.2 mmol) and césium carbonate (14 g, 44 mmol). Toluene (73 mL) was added and the mixture was heated to 100 °C. After 16 h, the mixture was allowed to cool to RT, filtered through Celite® with EtOAc (100 mL) and concentrated under reduced pressure. The crude material was purified using column chromatography eluting with 10% EtOAc in PE to obtain tert-butyl 4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidine-1-carboxylate as a yellow oil (7.6 g, 82%). 1H NMR (CDCI3) δ: 7.51 (dd, 1H), 7.39-7.47 (m, 1H), 7.06-7.18 (m, 2H), 6.73 (d, 1H), 6.62 (d, 1H), 5.40 (s, 2H), 4.22 (br s, 2H), 2.83 (m, 2H), 2.73 (tt, 1H), 1.81-1.94 (m, 2H), 1.64-1.79 (m, 2H), 1.50 (s, 9H).
Step 2
To a stirred solution of tert-butyl 4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidine-1-carboxylate (50 g, 120 mmol) in EtOAc (700 mL) was added pTSA*H2O (59 g, 310 mmol). The mixture was heated to 60 °C. After 30 min, the solution was allowed to cool to RT. The résultant solid precipitate was slurried for 16 h, collected by filtration and then dried under reduced pressure to obtain Intermediate 3 as a solid (81 g, quant). 1H NMR (600 MHz, DMSO-d6) δ: 8.55 (brs, 1H), 8.28 (d, 1H), 7.68 (t, 1H), 7.60 (t, 1H), 7.48 (d, 4H), 7.32 (d, 1H), 7.12 (d, 4H), 6.89 (d, 1H), 6.74 (d, 1H), 5.38 (s, 2H), 3.37 (d, 2H), 2.98-3.09 (m, 2H), 2.87-2.96 (m, 1H), 2.29 (s, 6H), 1.96-2.01 (m, 2H), 1.80-1.94 (m, 2H).
NH
Intermediate 4
3-Fluoro-4-(((6-(piperidin-4-yl)pyridin-2-yl)oxy)methyl)benzonitrile bis(4methylbenzenesulfonate)
Step 1
To a solution of diisopropylamine (92 mL, 656 mmol) in THF (350 mL) at -26 °C was added n-butyllithium in heptanes (2.6 M, 250 mL, 650 mmol) over 15 min. The mixture was cooled to -30 °C and a solution of 1-(tert-butyl) 4-methyl piperidine-1,4dicarboxylate (156 g, 641 mmol) in THF (150 mL) added over 25 min. After 10 min, a solution of 2,6-dichloropyridine (94 g, 635 mmol) in THF (150 mL) was added over 2 min. The mixture was warmed to 25 °C for 2.5 h and then cooled to 8 °C and treated with 6 M HCl (125 mL) over 20 min to bring the pH of the mixture to ~7-8. The mixture was diluted with water (100 mL) and MTBE (150 mL) and the layers separated. The aq. layer was extracted with MTBE (150 mL) and the combined organic layers washed with brine (150 mL), dried over MgSCU. The solvent was removed under reduced pressure to provide crude 1-(tert-butyl) 4-methyl 4-(6-chloropyridin-2-yl)piperidine-1,4-dicarboxylate (241 g) as a yellow oil, which was used in the next step without purification. 1H NMR of a purified sample (400 MHz, CDCI3) δ: 7.62 (t, 1H), 7.21 (d, 2H), 3.83 (br s, 2H), 3.71 (s, 3H), 3.14 (br s, 2H), 2.41 (d, 2H), 2.08 (ddd, 2H), 1.45 (s, 9H).
Step 2
The crude 1-(tert-butyl) 4-methyl 4-(6-chloropyridin-2-yl)piperidine-1,4dicarboxylate (241 g, assumed 635 mmol) was dissolved in MeOH (400 mL) at 43 °C and treated with 4 M aq. NaOH (300 mL) over 20 min. The mixture was warmed to 50 °C and stirred for 35 min. The mixture was then cooled to 11 °C and the pH adjusted to ~2 by addition of 6 M HCl (200 mL) over 25 min while continuing to cool to 5 °C, after which a solid precipitate formed. The slurry was diluted with water (300 mL) and stirred for 40 min, after which the solid was collected by filtration, washed with water and then dried under vacuum at 50 °C to provide a white solid (224 g). The solid was triturated in heptane (750 mL) at 45 °C for 45 min. The mixture was cooled to 16 °C and the solid collected by filtration, washed with heptane and dried to provide 1-(tert-butoxycarbonyl)-4-(6chloropyridin-2-yl)piperidine-4-carboxylic acid (187 g, 549 mmol, 86% for two steps) as a white solid.
Step 3
A solution of 1-(tert-butoxycarbonyl)-4-(6-chloropyridin-2-yl)piperidine-4carboxylic acid (187 g, 549 mmol) in DCE (900 mL) was heated at 82 °C overnight and then cooled to 20 °C. The mixture was treated with Magnesol' (30 g) for 40 min. The slurry was filtered through a pad of Magnesol® (30 g) and the solids washed with 1:1 MTBE:heptane (300 mL). The filtrate was concentrated under reduced pressure to give a pale yellow solid, which was triturated in heptane (250 mL) at 50 °C. The mixture was cooled to 12 °C and the solid collected by filtration, washed with heptane and dried under vacuum at45 °Cto provide tert-butyl 4-(6-chloropyridin-2-yl)piperidine-1-carboxylate (143 g, 481 mmol, 88%) as a solid. 1H NMR (600 MHz, CDCI3) δ: 7.58 (t, 1H), 7.17 (d, 1H), 7.06 (d, 1 H), 4.25 (br s, 2H), 2.66-2.93 (m, 3H), 1.91 (d, 2H), 1.69 (qd, 2H), 1.47 (s, 9H).
Step 4
A mixture of tert-butyl 4-(6-chloropyridin-2-yl)piperidine-1-carboxylate (100 g, 337 mmol), 3-fluoro-4-(hydroxymethyl)benzonitrile (53.9 g, 357 mmol) and CS2CO3 (170 g, 522 mmol) in dioxane (900 mL) was deoxygenated with 5 vacuum/nitrogen fill cycles. JohnPhos ([1,1'-biphenyl]-2-yl-di-tert-butylphosphine, 2.02 g, 6.77 mmol) and Pd2(dba)3 (3.10 g, 3.39 mmol) were added and 2 further vacuum/nitrogen fill cycles applied. The mixture was then heated at 95 °C for 3 h. Additional JohnPhos (660 mg, 2.21 mmol) and Pd2(dba)3 (990 mg, 1.08 mmol) were added and heating continued overnight. The mixture was cooled to 20 °C and filtered through a pad of Celite®, washing with MTBE (250 mL). The filtrate was concentrated under reduced pressure to give a red-orange oil (174 g). This material was dissolved in 30% MTBE/hexane (600 mL), stirred with Magnesol® (20
g) and Darco® G-60 (10 g) for 70 min and then filtered through a pad of silica (100 g), washing with 50% MTBE/hexane (600 mL). The filtrate was concentrated under reduced pressure and azeotroped with EtOAc (100 mL) to provide tert-butyl 4-(6-((4-cyano-2fluorobenzyl)oxy)pyridin-2-yl)piperidine-1-carboxylate as an oil (147 g), which was used without further purification. 1H NMR of a purified sample (600 MHz, CDCE) δ: 7.62 (t, 1 H), 7.53 (t, 1 H), 7.44 (d, 1 H), 7.37 (d, 1 H), 6.75 (d, 1 H), 6.65 (d, 1 H), 5.49 (s, 2H), 4.20 (br s, 2H), 2.81 (br s, 2H), 2.70 (tt, 1 H), 1.82 (d, 2H), 1.67 (d, 2H), 1.49 (s, 9H).
Step 5
To a stirred solution of tert-butyl 4-(6-((4-cyano-2-fluorobenzyl)oxy)pyridin-2yl)piperidine-1-carboxylate (147 g, assumed 337 mmol) in EtOAc (1.8 L) at RT was added pTSA’HzO (161 g, 846 mmol). The mixture was heated to 60 °C, which resulted in gas évolution and solid formation. The mixture was stirred for 1.5 h, after which additional pTSA»H2O (12 g, 63 mmol) added, and stirring continued for 45 min. The slurry was cooled to 17 °C and the solids collected by filtration, washed with EtOAc (200 mL), and dried to provide 205 g of solid. This material was dissolved in MeOH (500 mL) at 55 °C and diluted with EtOAc (1 L). The resulting slurry was cooled to 20 °C and the solids collected by filtration, washed with 9:1 EtOAc:MeOH (100 mL) and EtOAc (250 mL) and dried to provide Intermediate 4 (176.6 g, 269 mmol, 80% for two steps) as a white solid. 1H NMR (600 MHz, DMSO-d6) δ: 8.53 (br s, 1 H), 8.26 (br s, 1 H), 7.89 (d, 1 H), 7.67-7.78 (m, 3H), 7.48 (d, 4H), 7.11 (d, 4H), 6.90 (d, 1H), 6.79 (d, 1H), 5.48 (s, 2H), 3.35 (d, 2H), 2.96-3.09 (m, 2H), 2.79-2.96 (m, 1H), 2.29 (s, 6H), 1.93-2.03 (m, 2H), 1.77-1.90 (m, 2H).
Intermediate 5
2-(4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)acetic acid
Step 1
To a mixture of Intermediate 3 (70.0 g, 209 mmol) and K2CO3 (118 g, 863 mmol) in DMF (800 mL) was added ethyl 2-bromoacetate (39.9 g, 236 mmol) portionwise. The mixture was stirred at 30 °C for 1 h. The mixture was diluted with water (500 mL), and extracted with EtOAc (400 mL x 3). The organic layers were combined, dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (silica gel column, 10:1 ΡΕ/EtOAc) to afford 74 g of ethyl 2-(4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)acetate (84%) as a yellow oil. 1H NMR (400 MHz, CDCI3) 0 7.51 (t, 1H), 7.45 (t, 1H), 7.09-7.17 (m, 2H), 6.75 (d, 1H), 6.61 (d, 1H), 5.41 (s, 2H), 4.22 (q, 2H), 3.27 (s, 2H), 3.07 (d, 2H), 2.54-2.65 (m, 1H), 2.32 (td, 2H), 1.93-2.07 (m, 2H), 1.85-1.92 (m, 2H), 1.30 (t, 3H).
Step 2
To a solution of ethyl 2-(4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1yl)acetate (73 g, 179 mmol) in EtOH (270 mL) was added 5 M NaOH (156 mL, 780 mmol). The solution was stirred at 25 °C for 2 h. The mixture was acidified to pH ~3.5 with 1 M HCl. The resulting precipitate was collected by filtration. The solids were washed with water and dried under vacuum to afford 54 g of Intermediate 5 (78%) as a pale yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 7.65-7.72 (m, 1 H), 7.62 (t, 1 H), 7.47 (dd, 1 H), 7.32 (dd, 1H), 6.92 (d, 1H), 6.73 (d, 1H), 5.40 (s, 2H), 4.13 (s, 2H), 3.58 (d, 2H), 3.16-3.26 (m, 2H), 2.89 (br s, 1 H), 2.00-2.19 (m, 4H); LC-MS = 378.8.
Intermediate 6 tert-Butyl 4-(5-fluoro-6-oxo-1,6-dihydropyridin-2-yl)piperidine-1 -carboxylate
Step 1
To a solution of 2-bromo-5-fluoropyridine (20 g, 110 mmol) and tert-butyl 4(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydropyridine-1(2H)-carboxylate (35.1 g, 114 mmol) in THF (240 mL) was added Pd(PPhs)4 (13.1 g, 11.4 mmol), and NazCOs (24.1 g, 227 mmol). The resulting yellow reaction mixture was stirred at 90 °C for 48 h. The reaction was cooled to RT, diluted with water (100 mL) and extracted with EtOAc (3 x 200 mL). The combined organic extracts were washed with brine (100 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (1-20% EtOAc/PE gradient) to deliver tert-butyl 5fluoro-3',6'-dihydro-[2,4'-bipyridine]-T(2'H)-carboxylate (31 g, 98%) as a colorless oil. 1H
NMR (CDCh) δ 8.41 (t, 1H), 7.37 (dd, 2H), 6.52 (br s, 1H), 4.13 (d, 2H), 3.65 (m, 2H),
2.57-2.70 (m, 2H), 1.49 (s, 9H).
Step 2
To a colorless solution of tert-butyl 5-fluoro-3',6'-dihydro-[2,4'-bipyridine]-T(2'H)carboxylate (31 g, 110 mmol) in EtOAc (300 mL) was added 10% wet Pd/C (1.2 g, 5.6 mmol). The black mixture was stirred at 25 °C under H2 (15 psi) for 16 h. The mixture was filtered through a Celite® pad and concentrated under reduced pressure to deliver tertbutyl 4-(5-fluoropyridin-2-yl)piperidine-1-carboxylate (31 g, 99%) as a colorless oil. 1H NMR (CDCh) δ 8.39 (d, 1H), 7.34 (td, 1 H), 7.15 (dd, 1H), 4.25 (brs, 2H), 2.74-2.93 (m, 3H), 1.89 (d, 2H), 1.69 (qd, 2H), 1.48 (s, 9H).
Step 3
To a solution of deliver tert-butyl 4-(5-fluoropyridin-2-yl)piperidine-1-carboxylate (31 g, 110 mmol) in DCM (400 mL) was added m-CPBA (47.7 g, 276 mmol) at 0 °C. The resulting reaction mixture was stirred at RT for 16 h. The white suspension was filtered, and the filtrate then quenched with aq. Na2SOs (200 mL). The aq. layer was separated and then extracted with DCM (3 x 200). The combined organic layers were washed with brine (50 mL), dried over anhydrous N32SO4, filtered, and concentrated under reduced pressure. The crude product was purified by flash chromatography (0.5-4% MeOH/DCM gradient) to deliver 2-(1-(tert-butoxycarbonyl)piperidin-4-yl)-5-fluoropyridine 1-oxide (20 g, 61%) as a solid. 1H NMR (CDCh) δ 8.21 (dd, 1H), 7.11-7.18 (m, 1H), 7.02-7.09 (m, 1H), 4.26 (brs, 2H), 3.58 (m, 1H), 2.89 (brs, 2H), 2.02 (d, 2H), 1.43-1.52 (m, 11 H).
Step 4
To a solution of 2-(1-(ferf-butoxycarbonyl)piperidin-4-yl)-5-fluoropyridine 1-oxide (10 g, 34 mmol) in THF (150 mL) at 0 °C was added EtsN (6.83 g, 67.5 mmol), and TFAA (70.9 g, 337 mmol), dropwise. The mixture was stirred at 0 °C for 1 h, and RT for 16 h. The light yellow solution was quenched with aq. NaHCOs (400 mL). The pH was adjusted to ~4 with TFA and the mixture extracted with EtOAc (3 x 200 mL). The combined organic extracts were washed with brine (50 mL), dried over anhydrous Na2SÜ4, filtered, and concentrated under reduced pressure. The crude product was purified by flash chromatography (4-80% EtOAc in PE) to give Intermediate 6 (5.4 g, 54%) as a solid. 1H NMR (CDCh) δ 12.92 (brs, 1H), 7.17 (dd, 1H), 5.97 (dd, 1H), 4.25 (brs, 2H), 2.86 (brs, 2H), 2.72 (t, 1H), 1.95 (d, 2H), 1.56 (qd, 2H), 1.48 (s, 9H).
Intermediate 7
2-(4-(6-((4-Cyanobenzyl)oxy)-5-fluoropyridin-2-yl)piperidin-1-yl)acetic acid
Step 1
To a solution of Intermediate 6 (2.0 g, 6.8 mmol), 4-cyanobenzyl alcohol (1.35 g,
10.1 mmol) and 1,T-(azodicarbonyl)dipiperidine (2.55 g, 10.1 mmol ) in PhChh (30 mL) was added tri-n-butylphosphine (2.05 g, 10.1 mmol), dropwise, under a N2 atmosphère. The resulting light yellow solution was stirred at 80 °C under N2 atmosphère for 48 h. The mixture was diluted with EtOAc (100 mL) and washed with water (100 mL). The organic phase was dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0-15% EtOAc/PE) to give tert-butyl
4-(6-((4-Cyanobenzyl)oxy)-5-fluoropyridin-2-yl)piperidine-1-carboxylate (1.72 g, 62% yield) as a colorless oil. 1H NMR (CDCI3) δ 7.67 (d, 2H), 7.58 (d, 2H), 7.29 (dd, 1H), 6.71 (dd, 1 H), 5.51 (s, 2H), 4.20 (br s, 2H), 2.81 (t, 2H), 2.69 (dt, 1 H), 1.81 (d, 2H), 1.65 (br s, 2H), 1.49 (s, 9H).
Step 2
To a solution of tert-butyl 4-(6-((4-cyanobenzyl)oxy)-5-fluoropyridin-2-yl)piperidine1-carboxylate (1.72 g, 4.18 mmol) in DCM (15 mL) was added, dropwise, TFA (5 mL). The resulting light yellow solution was stirred at 25 °C for 2 h. The mixture was concentrated under reduced pressure to give 4-(((3-fluoro-6-(piperidin-4-yl)pyridin-2yl)oxy)methyl)benzonitrile trifluoroacetate (1.3 g, quant.) as a light yellow solid. 1H NMR (CD3OD) δ 7.74 (d, 2H), 7.63 (d, 2H), 7.46 (dd, 1H), 6.89 (dd, 1H), 5.56 (s, 2H), 3.42-3.53 (m,2H), 3.11 (td, 2H), 2.96 (tt, 1H), 2.03-2.13 (m, 2H), 1.87-2.02 (m, 2H).
Step 3
To a colorless solution of 4-(((3-fluoro-6-(piperidin-4-yl)pyridin-2yl)oxy)methyl)benzonitrile trifluoroacetate (1.3 g, 4.2 mmol) and ethyl 2-bromoacetate (767 mg, 4.59 mmol) in MeCN (20 mL) was added K2CO3 (2.89 g, 20.9 mmol). The resulting white suspension was stirred at 60 °C for 3 h and left at RT for 16 h. The mixture was filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0-33% EtOAc in PE) to give ethyl 2-(4-(6-((4-cyanobenzyl)oxy)-
5-fluoropyridin-2-yl)piperidin-1-yl)acetate (1.07 g, 65%) as light yellow solid. 1H NMR (CDCb) δ 7.67 (d, 2H), 7.58 (d, 2H), 7.28 (dd, 1H), 6.72 (dd, 1H), 5.52 (s, 2H), 4.21 (m,
2H), 3.26 (s, 2H), 3.06 (d, 2H), 2.55 (tt, 1H), 2.29 (dt, 2H), 1.94 (dq, 2H), 1.77-1.86 (m, 2H), 1.30 (m, 3H).
Step 4
To a solution of ethyl 2-(4-(6-((4-cyanobenzyl)oxy)-5-fluoropyridin-2-yl)piperidin-1yl)acetate (1.07 g, 2.69 mmol) in MeOH (10 mL) was added, dropwise, a solution of NaOH (162 mg, 4.04 mmol) in water (2 mL). The resulting colorless solution was stirred at 25 °C for 3 h. The mixture was diluted with water (30 mL), extracted with MTBE (30 mL). The organic phase was acidified to pH ~7 with 2 M HCl and lyophilized for 16 h. The crude product was purified by flash chromatography (0-5% MeOH/DCM gradient) to give Intermediate 7 (850 mg, 86% yield) as a solid. 1H NMR (400 MHz, CD3OD) δ 7.75 (d, 2H), 7.67 (d, 2H), 7.46 (dd, 1H), 6.92 (dd, 1H), 5.59 (s, 2H), 3.71-3.80 (m, 2H), 3.35 (s, 2H), 3.10-3.27 (m, 2H), 2.90-3.06 (m, 1H), 2.11-2.29 (m, 2H), 2.01-2.10 (m, 2H), LCMS(ES+): 369.9 (M+H).
Intermediate 8 rac-tert-Butyl (3R,4R)-4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)-3hydroxypiperidine-1 -carboxylate
To a solution of Intermediate 1 (800 mg, 1.9 mmol) in THF (15 mL) at 0 °C under a nitrogen atmosphère was added borane-THF complex (1 M in THF, 2.1 mL, 2.1 mmol). The reaction mixture was stirred at 0 °C for 10 min and then warmed to 30 °C for 30 min. The reaction vessel was then cooled to 0 °C, opened to the air, and a solution of NaOH (190 mg, 4.8 mmol) in water (5 mL) and hydrogen peroxide (30 wt% in water, 0.86 mL, 9.6 mmol) was added slowly. The mixture was then warmed to 26 °C and stirred for 16 h. Aqueous NasSOs (15 mL) and NaHCOs (15 mL) were added to the resulting white suspension and the mixture was extracted with DCM (3 x 50 mL). The combined organic layers were washed with brine (50 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. The crude material was purified using column chromatography eluting with EtOAc in PE (10% to 30% to 60% gradient) to obtain Intermediate 8 as a colorless oil (320 mg, 38%). LC-MS(ES+): 437 (M+H), 459 (M+Na).
Cl
F
NH
Intermediate 9 rac-(3R,4F?)-4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-3-ol trifluoroacetate
To a solution of Intermediate 8 (60 mg, 0.14 mmol) in DCM (2 mL) was added TFA (0.5 mL) at RT, and the mixture stirred for 1 h. The reaction mixture was concentrated under reduced pressure to obtain crude Intermediate 9 as a light yellow oil, which was used without purification. LC-MS(ES+): 337 (M+H).
ci
NH
Intermediate 10 rac-2-((4-Chloro-2-fluorobenzyl)oxy)-6-((3F?,4R)-3-fluoropiperidin-4-yl)pyridine hydrochloride
To a solution of Intermediate 8 (60 mg, 0.14 mmol) in DCM (6 mL) 0 °C under a nitrogen atmosphère was added DAST (diethylaminosulfurtrifluoride, 38 mg, 0.23 mmol). The resulting mixture was stirred at 0 °C for 10 min and then at RT for 2 h. Water was then added to the solution and the mixture extracted with EtOAc (3 x 100 mL). The combined organic solution was washed with brine and then concentrated under reduced pressure. The crude product was purified by prep-TLC (PE:EtOAc = 10:1 ) to give rac-tertbutyl (3R,4R)-4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)-3-fluoropiperidine-1carboxylate (80 mg), which was used without further purification. The material was dissolved in DCM (2 mL) at RT and 4 M HCl in EtOAc (1 mL) added, dropwise. The mixture was stirred for 1 h before being concentrated under reduced pressure to give Intermediate 10 as a white solid. 1H NMR (400 MHz, CD3OD) δ 7.65-7.77 (m, 1H), 7.51 (t, 1H), 7.18-7.32 (m, 2H), 7.00 (d, 1 H), 6.81 (d, 1H), 5.45 (s, 2H), 5.09-5.33 (m, 1H), 3.72 (ddd, 1H), 3.40-3.49 (m, 1H), 3.40-3.49 (m, 1H), 3.32-3.38 (m, 1H), 3.13-3.25 (m, 1H), 2.08-2.39 (m, 2H). Note: the stereochemistry of the piperidine substituents was assigned as trans by analogy to published precedent (see, for example, WO 2010/022055), but was not confirmed experimentally.
Intermediate 11 rac-(3R,4S)-4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-3-ol hydrochloride
Step 1
To a solution of Intermediate 8 (170 mg, 0.39 mmol) in DCM (5 mL) 0 °C was added EtaN (0.16 mL, 1.2 mmol) and MsCI (58 mg, 0.51 mmol) and the mixture stirred for 2 h. The mixture was diluted with DCM (30 mL), washed with saturated aq. NH4CI and brine, dried over NazSCU and then concentrated under reduced pressure to afford a yellow oil. This material was dissolved in DMSO (1.5 mL) and added to a suspension of césium formate (140 mg, 0.78 mmol) in DMSO (1 mL). The mixture was stirred at 120 °C for 4 h and 25 °C for 14 h. The mixture was poured into water (15 mL) and extracted with EtOAc (3x15 mL). The combined organic solution was washed with brine, dried over Na2SO4 and concentrated under reduced pressure. The crude product was purified by prep-TLC (PE:EtOAc = 4:1) to afford a colorless oil (60 mg).
The oil was dissolved in MeOH (2 mL) at RT, K2CO3 was added and the mixture stirred for 1 h. The mixture was diluted with EtOAc, washed with brine, dried over Na2SO4 and concentrated under reduced pressure to give a crude product. The product was purified by préparative SFC to afford rac-terf-butyl (3R,4S)-4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-3-hydroxypiperidine-1-carboxylate as a yellow gum (20 mg, 12%). LC-MS(ES+): 437 (M+H), 459 (M+Na)
SFC Method: Column: OJ (250 mm x 30 mm, 5 pm); Mobile phase: CO2 w/15% iPrOH (0.1% NH4OH); Flow rate: 60 ml/min; Wavelength: 220 nm. Rétention time = 3.65 min.
Step 2
To a solution of rac-tert-butyl (3R,4S)-4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)-3-hydroxypiperidine-1-carboxylate (20 mg, 0.046 mmol) in EtOAc (4 mL) at 0 °C was added 4 M HCl in EtOAc (4 mL), and the mixture stirred for 2 h. The mixture was then concentrated under reduced pressure to afford crude example Intermediate 11 as a light yellow oil, which was used without purification. LC-MS(ES+): 337 (M+H).
Intermediate 12a rac-2-((4-Chloro-2-fluorobenzyl)oxy)-6-((3R,4S)-3-methylpiperidin-4-yl)pyridine trifluoroacetate
Intermediate 12b rac-2-((4-Chloro-2-fluorobenzyl)oxy)-6-((3R,4R)-3-methylpiperidin-4-yl)pyridine trifluoroacetate
Step 1 rac-tert-butyl (3R,4S)-4-(6-chloropyridin-2-yl)-3-methylpiperidine-1-carboxylate and rac-tert-butyl (3R,4R)-4-(6-chloropyridin-2-yl)-3-methylpiperidine-1-carboxylate were prepared using a route analogous to that described for Intermediates 1 and 2, using tertbutyl 3-methyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydropyridine-1 (2H)carboxylate in the Suzuki reaction. The mixture of cis and trans isomers was separated by column chromatography eluting with EtOAc in PE (0-15% gradient). The trans (rac3R,4S)-isomer eluted first.
rac-tert-butyl (3R,4S)-4-(6-chloropyridin-2-yl)-3-methylpiperidine-1-carboxylate: 1H NMR (400 MHz, CDCI3) δ 7.56 (t, 1 H), 7.71 (d, 1 H), 7.04 (d, 1 H), 4.22 (br s, 2H), 2.76 (br s, 1 H), 2.43-2.39 (m, 2H), 2.02-1.92 (m, 1 H), 1.79-1.71 (m, 2H), 1.48 (s, 9H), 0.70 (d, 3H).
rac-tert-butyl (3R,4R)-4-(6-chloropyridin-2-yl)-3-methylpiperidine-1-carboxylate: 1H NMR (400 MHz, CDCI3) δ 7.59 (t, 1H), 7.16 (d, 1H), 6.99 (d, 1H), 4.36 (br s, 1H), 4.01 (br s, 1H), 3.05 (dt, 2H), 2.79 (br s, 1H), 2.33 (q, 1H), 2.07-2.01 (m, 1H), 1.71 (d, 1H), 1.46 (s, 9H), 0.66 (d, 3H).
Step 2
Intermediates 12a and 12b were prepared from the respective separated chloropyridine isomers by éthérification in a manner analogous to Intermediate 3, step 1, and deprotection in a manner analogous to Intermediate 9, and used without purification.
NH
Intermediate 13
3-Fluoro-4-(((6-(piperazin-1 -yl)pyridin-2-yl)oxy)methyl)benzonitrile bis hydrochloride Step 1
The reaction was carried out in two parallel batches; example batch préparation follows: To a stirred suspension of KOtBu (313 g, 2.79 mol) in THF (4.0 L) was added 4cyano-2-fluorobenzyl alcohol (281 g, 1.86 mol) portion-wise between 10-15 °C. The mixture was stirred at 15 °C for 45 min and 2,6-dichloropyridine (230 g, 1.55 mol) was added in several portions to the reaction mixture at 15 °C and the mixture was stirred at 15 °C for 18 h. The mixture was poured into sat. aq. NH4CI (10 L). EtOAc (10 L) was added and the mixture was stirred for 15 min. The mixture was filtered through a pad of Celite®. The organic layer was separated and the aq. layer extracted with EtOAc (2 x 6.0 L). The combined organic layers were washed with brine (5.0 L), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by column chromatography on silica gel (PE/EtOAc 10-15% gradient) to give 4-(((6chloropyridin-2-yl)oxy)methyl)-3-fluorobenzonitrile as a light yellow solid. The combined batches yielded 550 g (67%). 1H NMR (CDCh) δ 7.67 (t, 1 H), 7.58 (t, 1 H), 7.48 (dd, 1 H), 7.40 (dd, 1H), 6.97 (d, 1H), 6.75 (d, 1H), 5.49 (s, 2H).
Step 2
To a stirred solution of 4-(((6-chloropyridin-2-yl)oxy)methyl)-3-fluorobenzonitrile (180 g, 0.685 mol) and tert-butyl piperazine-1-carboxylate (140 g, 0.754 mol) in PhCHs (2.0 L) was added CS2CO3 (446 g, 1.37 mol), BINAP (42.6 g, 0.0685 mol) and Pd2(dba)3 (31.4 g, 0.0343 mol) under N2 at 15 °C. The mixture was degassed and refilled with N2 three times. The resulting mixture was heated to 120 °C under N2 for 18 h. The reaction mixture was cooled to 80 °C and filtered through a pad of Celite®. The filter cake was washed with EtOAc (4x1.0 L) and the combined organic layers were concentrated under reduced pressure. The crude product was purified by column chromatography on silica gel (PE/EtOAc 10-15% gradient). The product was triturated with PE (1.0 L) with stirring at 10 °C for 2 h. The solids were collected by filtration to yield tert-butyl 4-(6-((4-cyano-2fluorobenzyl)oxy)pyridin-2-yl)piperazine-1-carboxylate (168 g, 76%) as an off-white solid. 1H NMR (CDCb) δ 7.62 (t, 1H), 7.41-7.49 (m, 2H), 7.38 (dd, 1H), 6.20 (dd, 2H), 5.45 (s, 2H), 3.37-3.57 (m, 8H), 1.49 (s, 9H).
Step 3
To a solution of EtOH (2.8 mL, 48 mmol) in EtOAc (20 mL) was added acetyl choride (2.0 ml, 28 mmol), dropwise. After stirring for 1 h at 40 °C, tert-butyl 4-(6-((4cyano-2-fluorobenzyl)oxy)pyridin-2-yl)piperazine-1-carboxylate (1.75 g, 4.24 mmol) was added in one portion and the mixture was then stirred at 40 °C for 2 h. The reaction was allowed to cool to RT and stirred for 1 h. EtOAc (10 mL) was added to the white suspension and the résultant slurry was stirred vigorously at RT for 1 h. The solid was collected by filtration to provide the bis HCl sait of the desired product Intermediate 13 (1.45 g, 89%) as a solid. 1H NMR (600 MHz, DMSO-d6) δ 9.45 (br s, 2H), 7.89 (d, 1H), 7.65-7.73 (m, 2H), 7.55 (m, 1H), 6.44 (d, 1H), 6.22 (d, 1H), 5.42 (s, 2H), 3.61-3.74 (m, 4H), 3.09 (br s, 4H).
Cl r:
NH
Intermediate 14 (S)-1-(6-((4-Chloro-2-fluorobenzyl)oxy)-5-fluoropyridin-2-yl)-3-methylpiperazine hydrochloride
Step 1
To a solution of 2,3,5-trifluoropyridine (1.5 g, 11 mmol) and 4-chloro-2-fluorobenzyl alcohol (1.81 g, 11.3 mmol) in NMP (20 mL) was added K2CO3 (4.67 g, 33.8 mmol) at 25 °C and the mixture was stirred at 100 °C for 16 h. The mixture was poured into water (30 mL) and then extracted with EtOAc (3 x 50 mL). The combined organic extracts were washed with brine (3 x 40 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0 to 5% EtOAc/PE gradient) to give 2-((4-chloro-2-fluorobenzyl)oxy)-3,6-difluoropyridine (2.45 g, 80%) as a colorless oil. 1H NMR (CDCh) δ 7.41-7.54 (m, 2H), 7.11-7.20 (m, 2H), 6.47 (ddd, 1H), 5.44 (s, 2H).
Step 2
To a solution of 2-((4-chloro-2-fluorobenzyl)oxy)-3,6-difluoropyridine (200 mg, 0.731 mmol) and tert-butyl (S)-2-methylpiperazine-1-carboxylate (161 mg, 0.804 mmol) in DMSO (3 mL) was added K2CO3 (303 mg, 2.19 mmol) at RT. The reaction was stirred at 120 °C for 18 h. The mixture was poured into water (10 mL) and then extracted with EtOAc (3 x 20 mL). The combined organic extracts were washed with brine (3 x 20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by Prep-TLC (15% EtOAc/PE) to give tert-butyl (S)-4-(6-((4-chloro-2fluorobenzyl)oxy)-5-fluoropyridin-2-yl)-2-methylpiperazine-1-carboxylate (60 mg, 18%) as a colorless oil. LC-MS(ES+): 397.9 (M+H-tBu).
Step 3
To a solution of (S)-4-(6-((4-chloro-2-fluorobenzyl)oxy)-5-fluoropyridin-2-yl)-2methylpiperazine-1-carboxylate (60 mg, 0.13 mmol) in DCM (3 mL) was added HCI/EtOAc (3 mL). The solution was stirred at 30 °C for 0.5 h. The suspension was concentrated under reduced pressure to deliver Intermediate 14 (50 mg, 89%) as a solid. LC-MS(ES+): 353.9 (M+H).
Cl
NH
Intermediate 15 (S)-1-(6-((4-Chloro-2-fluorobenzyl)oxy)-3-fluoropyridin-2-yl)-3-methylpiperazine hydrochloride
Step 1
To a solution of 2,3,5-trifluoropyridine (500 mg, 3.76 mmol) and tert-butyl piperazine-1-carboxylate (753 mg, 3.76 mmol) in MeCN (8 mL) was added EtsN (1.14 g, 11.3 mmol) at 30 °C and the reaction was heated and then stirred at 70 °C for 16 h. The reaction mixture was poured into water (20 mL) and extracted with EtOAc (3 x 30 mL). The combined organic extracts were washed with brine (2 x 20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0 to 5% EtOAc/PE) to give tert-butyl (S)-4-(3,6-difluoropyridin-219245 yl)-2-methylpiperazine-1-carboxylate (870 mg, 74%) as a pale brown oil. 1H NMR (CDCh) δ 7.24-7.34 (m, 1 H), 6.22 (ddd, 1 H), 4.31 (br s, 1 H), 4.09 (ddt, 1 H), 3.92 (dt, 2H), 3.22 (td,
1H), 3.13 (dd, 1H), 2.93 (td, 1H), 1.49 (s, 9H), 1.23 (d, 3H).
Step 2
To a solution of 4-chloro-2-fluorobenzyl alcohol (102 mg, 0.638 mmol) in DMF (2 mL) was added NaH (44.7 mg, 1.12 mmol, 60% in minerai oil). The yellow mixture was stirred at 30 °C for 15 min. Then a solution of tert-butyl (S)-4-(3,6-difluoropyridin-2-yl)-2methylpiperazine-1-carboxylate (100 mg, 0.319 mmol) in DMF (2 mL) was added at RT. The reaction mixture was stirred at 90 °C for 18 h. The reaction mixture were poured into water (30 mL) and then extracted with EtOAc (3 x 30 mL). The combined organic extracts were washed with brine (3 x 20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by Prep-TLC (EtOAc:PE 5:1) to give tert-butyl (S)-4-(6-((4-chloro-2-fluorobenzyl)oxy)-3-fluoropyridin-2-yl)-2methylpiperazine-1-carboxylate (136 mg, 47%) as a colorless oil. LC-MS(ES+): 397.9 (M+H -tBu).
Step 3
To a solution of tert-butyl (S)-4-(6-((4-chloro-2-fluorobenzyl)oxy)-3-fluoropyridin-2-yl)-2methylpiperazine-1-carboxylate (136 mg, 0.300 mmol) in DCM (4 mL) was added HCI/EtOAc (4 mL). The solution was stirred at 30 °C for 2 h. The suspension was concentrated under reduced pressure to give Intermediate 15 (132 mg, quant.) as a pale yellow solid. LC-MS(ES+): 354.1 (M+H).
Intermediate 16
Methyl 4-amino-3-(methylamino)benzoate
Step 1
To a solution of methyl 3-fluoro-4-nitrobenzoate (5.10 g, 25.6 mmol) in THF (60 mL) was added methylamine (38.4 mL, 76.8 mmol, 2 M in THF), dropwise, over 10 min. The pale yellow solution turned deep orange immediately upon addition and was stirred 2 h at RT. The mixture was diluted with Et2Ü (100 mL) and the separated organic layer washed with water (50 mL) and brine (50 mL). The organic layer was dried over Na2SO4, filtered and concentrated under reduced pressure to yield 5.26 g of methyl 3(methylamino)-4-nitrobenzoate (98%) as a deep orange solid. 1H NMR (400 MHz, CDCh) δ 8.21 (d, 1 H), 7.99 (br s, 1 H), 7.54 (d, 1 H), 7.23 (dd, 1 H), 3.94 (s, 3H), 3.08 (d, 3H); LCMS(ES+): 211.1 (M+H).
Step 2
Methyl 3-(methylamino)-4-nitrobenzoate (5.26 g, 25.0 mmol) was dissolved in EtOH (150 mL). The solution was added to 500 mL Parr® bottle previously charged with 1 g 10% Pd/C (50% water). The mixture was shaken under 50 psi H2 atmosphère for 1 h at RT. The mixture was filtered and the filtercake rinsed with EtOH (100 mL). The colorless filtrate was concentrated under reduced pressure to yield 4.38 g of Intermediate 16 (97%) as an off-white solid. 1H NMR (400 MHz, CDCh) δ 7.47 (dd, 1H), 7.35 (d, 1H),
6.69 (d, 1H), 3.88 (s, 3H), 3.75 (brs, 2H), 3.22 (br s, 1H), 2.92 (s, 3H); MS(APCI+): 181.1 (M+H).
Cl 7=7 O—
Intermediate 17
Methyl 2-(chloromethyl)-1 -methyl-1 H-benzo[d]imidazole-6-carboxylate
Intermediate 16 (206 mg, 1.14 mmol) was dissolved in dioxane (11.5 mL) and treated with chloroacetyl chloride (109 pL, 1.37 mmol). The mixture was stirred at 100 °C for 3 h and cooled to RT. EtsN (0.8 mL, 7 mmol) and heptane (10 mL) were added and filtered. The filtrate was concentrated under reduced pressure and the crude product was purified by flash chromatography (silica gel column, 40% EtOAc/heptanes) to afford 120 mg of Intermediate 17 (44%). 1H NMR (400 MHz, CDCh) δ 8.14 (s, 1H), 8.01 (d, 1H), 7.78 (d, 1H), 4.87 (s, 2H), 3.97 (s, 3H), 3.94 (s, 3H); LC-MS(ES+): 239.1 (M+H).
O
Intermediate 18
Methyl 4-amino-3-((2-methoxyethyl)amino)benzoate
Step 1
To a colorless solution of methyl 3-fluoro-4-nitrobenzoate (50 g, 250 mmol) in THF (400 mL) was added EtsN (40.7 g, 402 mmol, 55.8 mL) followed by addition of 2methoxyethylamine (30.2 g, 402 mmol) in THF (100 mL), dropwise, at RT. The résultant yellow solution was stirred at 55 °C for 18 h. The solution was cooled to RT and concentrated under reduced pressure to remove THF. The résultant yellow solid was dissolved in EtOAc (800 mL) and washed with sat. aq. NH4CI (250 mL). The aq. phase was separated and extracted with EtOAc (200 mL). The combined organic layers were washed with brine (3 x 250 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to yield methyl 3-((2-methoxyethyl)amino)-4-nitrobenzoate (60.2 g , 94%) as a yellow solid. 1H NMR (CDCI3) δ 8.23 (d, 1H), 8.17 (br s, 1H), 7.58 (d, 1H), 7.25(dd, 1H), 3.95 (s, 3H), 3.69-3.73 (m, 2H), 3.56 (m, 2H), 3.45 (s, 3H); LC-MS(ES+): 255.4 (M+H).
Step 2
To solution of methyl 3-((2-methoxyethyl)amino)-4-nitrobenzoate (30 g, 118 mmol) in MeOH (500 mL) was added Pd/C (10 g, 94 mmol). This reaction was stirred at RT under 15 psi H2 for 18 h. The black suspension was filtered through Celite® and the filtercake washed with MeOH (500 mL). The combined filtrâtes were concentrated under vacuum to give Intermediate 18 (26.5 g, quant.) as a brown oil which solidified on standing. 1H NMR (400 MHz, CDCh) δ 7.48 (dd, 1H), 7.36 (d, 1H), 6.69 (d, 1H), 3.87 (s, 3H), 3.77 (br.s, 2H), 3.68 (t, 2H), 3.41 (s, 3H), 3.32 (t, 2H); LC-MS(ES+): 224.7 (M+H).
Cl
Intermediate 19
Methyl 2-(chloromethyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6-carboxylate hydrochloride
A solution of Intermediate 18 (5.0 g, 24 mmol) in dioxane (100 mL) was heated to
100 °C, a solution of chloroacetic anhydride (4.1 g, 24.5 mmol) in dioxane (60 mL) was added via addition tunnel over a period of 10 h, and then stirred for another 12 h at 100 °C. The following day, the reaction was cooled to RT and the dioxane was removed under reduced pressure. The crude reaction mixture was dissolved in EtOAc and washed with saturated NaHCOs solution. The EtOAc layer was separated and dried over NazSO4 and filtered. A solution of 4 M HCl in dioxane (1.1 equiv.) was added to the EtOAc solution of the product with constant stirring. The HCl sait of desired product precipitated out as a pale yellow solid. The suspension was stirred for 1 h and the product then collected by filtration to obtain Intermediate 19 as a yellow solid (6.1 g 86%).1H NMR (600 MHz, CD3OD) δ 8.64 (s, 1 H), 8.30 (d, 1 H), 7.92 (d, 1 H), 5.32 (s, 2H), 4.84 (m, 2H), 3.99 (s, 3H), 3.83 (t, 2H), 3.31 (s, 3H). LC-MS(ES+): 283.2 (M+H).
Intermediate 20 (S)-Oxetan-2-ylmethyl methanesulfonate
Step 1
To a solution of potassium t-butoxide (670 g, 5.98 mol) in t-BuOH (5 L) was added trimethylsulfoxonium iodide (1.32 kg, 5.98 mol) at 25 °C. The mixture was heated to 60 °C and stirred for 30 min, then (S)-2-((benzyloxy)methyl)oxirane (500 g, 2.99 mol) was added. The mixture was heated to 80 °C for 2 h. The mixture was cooled to 25 °C and filtered through Celite®. The solids were washed with PE (3 x 2 L). The filtrate was treated with water (10 L) and extracted with PE (2 x 5 L). The organic layer was washed with brine, dried, filtered and concentrated in vacuo. The crude product was purified by column chromatography (ΡΕ/EtOAc gradient from 15:1 to 10:1) to deliver (S)-2((benzyloxy)methyl)oxetane (280 g, 52.6%) as a clear oil. 1H NMR (400 MHz, CDCI3) δ 7.15-7.34 (m, 5H), 4.90 (tdd, 1H), 4.44-4.67 (m, 4H), 3.49-3.63 (m, 2H), 2.44-2.66 (m, 2H).
Step 2
The reaction was carried out in two parallel batches; an example batch follows: To a solution of (S)-2-((benzyloxy)methyl)oxetane (140 g, 780 mmol) in THF (1.4 L) was added Pd(OH)2 (14 g) under a blanket of nitrogen. The mixture was heated to 45 °C and stirred under H2 (50 psi) for 16 h. The mixture was cooled to 25 °C and filtered through
Celite® to deliver the desired compound (S)-oxetan-2-ylmethanol as a solution in THF. A small aliquot was checked by 1H NMR and the remaining solution used directly in the next step. 1H NMR (400 MHz, DMSO-d6) δ 4.76-4.90 (m, 1H), 4.66 (tdd, 1H), 4.46 (ddd, 1H),
4.37 (td, 1H), 3.47 (dd, 2H), 2.32-2.58 (m, 2H).
Step 3
The reaction was carried out in two parallel batches; an example batch follows: To a solution of (S)-oxetan-2-ylmethanol (from Step 2, assumed 69 g, 780 mmol) in THF (1.4 L) was added EtsN (197 g, 1.95 mol) at 0 °C. Methanesulfonic anhydride (204 g, 1.17 mol) was added, dropwise, keeping the internai température below 10 °C. The mixture was stirred at 25 °C for 2 h. The two batches were combined and the mixture was treated with water (1 L) and the layers separated. The aq. phase was extracted with DCM (3x2 L). The combined organic solution was dried, filtered and concentrated under reduced pressure. The crude product was purified by column chromatography (EtOAc/PE 50100% gradient) to yield Intermediate 20 (250 g, 96% for two steps) as a yellow oil. 1H NMR (400 MHz, CDCIs) δ 4.98-5.09 (m, 1H), 4.69 (ddd, 1H), 4.59 (td, 1H), 4.37 (d, 2H), 3.11 (s, 3H), 2.72-2.82 (m, 1H), 2.64 (tdd, 1H).
o2n
Intermediate 21
Methyl (S)-4-nitro-3-((oxetan-2-ylmethyl)amino)benzoate
Step 1
To a solution of (S)-oxetan-2-ylmethyl methanesulfonate (180 g, 1.08 mol) in DMF (1.2 L) was added sodium azide (105 g, 1.62 mol). The mixture was heated to 80 °C and stirred for 16 h. The mixture was cooled to 0 °C and treated with diethyl ether (1.5 L) and the résultant suspension was stirred for 30 min. The solids were removed by filtration and the filter cake was washed with diethyl ether (2 x 200 mL). The diethyl ether was removed under vacuum at 25 °C to deliver a solution of (S)-2-(azidomethyl)oxetane in DMF (~1.2 L), which was used directly in the next step.
Step 2
The reaction was carried out in three parallel batches; an example batch follows: To a solution of (S)-2-(azidomethyl)oxetane (assumed 41 g, 360 mmol) in DMF (-400 mL) and THF (1 L) was added 10% Pd/C (50wt% wet, 13 g) under a blanket of nitrogen. The mixture was stirred at 25 °C under H2 (50 psi) for 16 h. The solution was filtered through Celite®, 10% Pd/C (dry, 4.0 g) added and the mixture stirred at 40 °C under H2 (50 psi) for 3 h, after which TLC analysis indicated complété reaction. The mixture was cooled to 0 °C and ail three batches were combined. The mixture was filtered through Celite® to obtain a solution of (S)-2-(aminomethyl)oxetane in DMF (-1.4 L) and THF (-2.6 L), which was used directly in the next step.
Step 3
To a solution of (S)-2-(aminomethyl)oxetane (assumed 94 g, 1.08 mol) in DMF (-1.4 L) and THF (-2.6 L) were added EtsN (327 g, 3.24 mol) and methyl 3-fluoro-4nitrobenzoate (200 g, 1.0 mol) at 25 °C. The mixture was stirred at 25 °C for 16 h. The mixture was concentrated under reduced pressure to remove THF and the remaining solution was diluted with water (1 L). The mixture was extracted with EtOAc (2 x 1.5 L). The combined organic extracts were washed with brine (2 x), dried and concentrated under reduced pressure. The crude product was purified by column chromatography (EtOAc/PE = 10-50% gradient) to deliver Intermediate 21 (158 g, 55%) as a yellow solid. 1H NMR (600 MHz, CDCb) δ 8.38 (brs, 1H), 8.25 (d, 1H), 7.64 (s, 1H), 7.27 (d, 1H), 5.135.20 (m, 1H), 4.70-4.82 (m, 1H), 4.64 (td, 1H), 3.95 (s, 3H), 3.57-3.71 (m, 2H), 2.71-2.86 (m, 1H), 2.55-2.70 (m, 1H); MS(ES+) = 266.7.
O
Intermediate 22
Methyl (S)-4-amino-3-((oxetan-2-ylmethyl)amino)benzoate
Intermediate 21 (15 g, 56 mmol) was dissolved in THF (100 mL) in a Parr® reactor. Pd/C (10% w/w, 1.5 g) was added to the reactor and the mixture was shaken at RT under 50 psi H2 for4 h. The mixture was filtered through Celite® and the filtrate was concentrated under reduced pressure to deliver Intermediate 22 (12.3 g, 92%) as a tan solid. 1H NMR (600 MHz, CDCb) δ 7.49 (dd, 1H), 7.39 (d, 1H), 6.70 (d, 1H), 5.05-5.18 (m, 1H), 4.76 (ddd, 1 H), 4.62 (dt, 1H), 3.87 (s, 3H), 3.42-3.50 (m, 1 H), 3.34-3.40 (m, 1H), 2.71-2.82 (m,
1H), 2.60 (ddt, 1H).
Cl
Intermediate 23
Methyl (S)-2-(chloromethyl)-1 -(oxetan-2-ylmethyl)-1 H-benzo[d]imidazole-6-carboxylate
To a solution of Intermediate 22 (127 g, 0.54 mol) in MeCN (500 mL) was added 2-chloro-1,1,1-trimethoxy ethane (76.2 ml, 0.57 mol) and pTSA’hbO (5.12 g, 26.9 mmol). The mixture was heated to 60 °C for 1 h. The reaction was cooled to RT and concentrated under reduced pressure. The résultant crude product was triturated in 50% EtOAc/heptane. The solids were collected by filtration to deliver Intermediate 23 (79 g, 50%) as a tan solid. 1H NMR (600 MHz, CDCI3) δ 8.12 (s, 1H), 8.00 (d, 1H), 7.79 (d, 1H), 5.16-5.26 (m, 1H), 5.03 (s, 2H), 4.57-4.66 (m, 2H), 4.48-4.56 (m, 1H), 4.33 (m, 1H), 3.95 (s, 3H), 2.71-2.81 (m, 1H), 2.36-2.47 (m, 1H).
O2n
Intermediate 24
Methyl 6-chloro-5-nitropicolinate
Step 1
2-Chloro-6-methyl-3-nitropyridine (97 g, 560 mmol) was slowly added to a flask previously charged with 18 M H2SO4 (400 mL) with stirring. Chromium trioxide (169 g,
1.69 mol) was added to the reaction mixture in small portions keeping the température below 50 °C. The reaction mixture was stirred at 15 °C for 20 h. The résultant green gum was poured into 2 Kg of ice and the résultant solids collected by filtration and dried under vacuum to yield 6-chloro-5-nitropicolinic acid (103 g, 90%) as a pale solid. 1H NMR (400 MHz, DMSO-d6) δ 8.70 (d, 1 H), 8.24 (d, 1 H).
Step 2
To a suspension 6-chloro-5-nitropicolinic acid (103 g, 508.51 mmol) in CH2CI2 (1
L) was added oxalyl chloride (129 g, 1.02 mol) and DMF (6 mL) at 0 °C. The reaction mixture was stirred at 15 °C for 1 h. MeOH (60 mL) was added to the reaction mixture at 15 °C. The solution was stirred at 15 ’C for an additional 10 min. The yellow solution was 5 concentrated under reduced pressure and the résultant crude product was purified by column chromatography (EtOAc/PE: 0-20% gradient) to deliver Intermediate 24 (106 g, 96%) as a solid. 1H NMR (400 MHz, CD3OD) δ 8.55 (d, 1H), 8.27 (d, 1H), 4.01 (s, 3H).
Ο
ΗΝ
Ο
Ο2Ν
Intermediate 25
Methyl (S)-5-nitro-6-((oxetan-2-ylmethyl)amino)picolinate
Step 1
A solution of (S)-2-(aminomethyl)oxetane (assumed 152 g, 1.7 mol) in DMF (3 L) and THF (3 L) was prepared from Intermediate 20 as described for Intermediate 21 (steps 1 and 2). Intermediate 24 (270 g, 1.25 mol) and EtsN (500 g, 5.1 mol) were added to a solution of Intermediate 20 (152 g, 1.7 mol) in DMF (3 L) and THF (3 L) at 25 °C. The mixture was stirred at 25 °C for 16 h. The mixture was concentrated under reduced pressure to remove the THF and water (5 L) added. The mixture was extracted with EtOAc (2 x 5 L) and the combined organic solutions were washed with brine (2 x), dried and concentrated under reduced pressure. The crude material was combined with a second batch of crude product from a similar experiment (70 g) and the solids triturated with PE:EtOAc (4:1, 500 mL) for 2 h. The solids were collected by filtration and dried to provide Intermediate 25 (304 g, 52%) as a yellow solid. 1H NMR (400 MHz, CDCh) δ 8.58 (br s, 1H), 8.56 (d, 1H), 7.39 (d, 1H), 5.08-5.18 (m, 1H), 4.73 (ddd, 1H), 4.61 (td, 1H), 4.06-4.16 (m, 1H), 3.98 (s, 3H), 3.88-3.97 (m, 1H), 2.68-2.80 (m, 1H), 2.55 (tdd, 1H).
h2n
Intermediate 26
Methyl (S)-5-amino-6-((oxetan-2-ylmethyl)amino)picolinate
Intermediate 25 (10 g, 37 mmol) was suspended in MeOH (150 mL) and treated with 10% Pd/C (1.0 g) and the mixture was stirred at RT under 50 psi H2 for 4 h. The mixture was filtered through Celite® and the filtrate was concentrated under reduced pressure to yield Intermediate 26 (8.4 g, 95%) as a yellow oil which solidified on standing. 1H NMR (600 MHz, CDCh) δ 7.49 (d, 1 H), 6.86 (d, 1H), 5.06-5.15 (m, 1H), 4.68-4.77 (m,
1H), 4.53-4.63 (m, 2H), 3.91 (s, 3H), 3.80-3.86 (m, 2H), 3.72 (br s, 2H), 2.68-2.78 (m,
1H), 2.52-2.61 (m, 1H).
Intermediate 27
Methyl (S)-2-(chloromethyl)-3-(oxetan-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5carboxylate
In a 2L, 3 neck flask equipped with a mechanical overhead stirrer Intermediate 26 (43.0 g, 181 mmol) was taken up in THF (780 mL). The résultant pale pink suspension was treated with a solution of chloroacetic anhydride (33.5 g, 190 mmol in 100 mL THF) via addition funnel over 30 min. The résultant light amber solution was stirred at RT for 2 h and then heated at 60 °C for 7 h. The reaction mixture was cooled to RT. Approximately 400 mL of solvent from the reaction was removed under reduced pressure on a rotary evaporator. The resulting solution was diluted with EtOAc, (500 mL) and treated with sat. aq. NaHCOs (200 mL). The biphasic mixture was stirred at RT for 30 min. The organic layer was separated and the aq. layer was extracted with EtOAc (500 mL). The combined organic layers were washed with brine (500 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to yield Intermediate 27 (52.5 g, 98%) as a yellowish brown solid. 1H NMR (600 MHz, CDCI3)0 8.14 (d, 2H), 5.19-5.28 (m, 1 H), 4.995.16 (m, 2H), 4.70-4.88 (m, 2H), 4.55-4.67 (m, 1H), 4.24-4.44 (m, 1H), 4.01 (s, 3H), 2.702.88 (m, 1H), 2.37-2.53 (m, 1H); LC-MS(ES+): 296.4 (M+H).
Intermediate 28 cis (+/-) Methyl 3-(((2-methoxycyclopentyl)methyl)amino)-4-nitrobenzoate Step 1
To a flask containing cis (+/-)-2-(aminomethyl)cyclopentan-1-ol (300 mg, 2.60 mmol), methyl 3-fluoro-4-nitrobenzoate (571 mg, 2.87 mmol) and EtsN (1.1 mL, 7.8 mmol) was added DMF and the mixture was stirred overnight. The reaction mixture was diluted with water and extracted with EtOAc. The organic extract was concentrated under reduced pressure and the crude product was purified by flash chromatography (EtOAc/heptanes) to deliver cis (+/-) methyl 3-(((-2-hydroxycyclopentyl)methyl)amino)-4nitrobenzoate (493 mg, 64%). 1H NMR (CDCb) δ 8.21 (br s, 1H), 8.19 (d, 1H), 7.62 (s, 1H), 7.20 (d, 1H), 4.38 (br s, 1H), 3.94 (s, 3H), 3.60 (ddd, 1H), 3.38-3.50 (m, 1H), 2.132.25 (m, 1 H), 1.84-2.01 (m, 3H), 1.57-1.78 (m, 4H).
Step 2
To a flask containing solution of cis (+/-) methyl 3-(((2hydroxycyclopentyl)methyl)amino)-4-nitrobenzoate (0.48 g, 1.6 mmol) in DCM ( 50 mL) was added 1,8-bis(dimethylamino)naphthalene (0.35 g, 1.6 mmol). The solution was stirred for 5 min and then trimethyloxonium tetrafluoroborate (0.48 g, 3.3 mmol) was added in portions over 10 min. The reaction mixture was then stirred an additional 18 h at RT. Water was added to the flask and the resulting mixture was extracted with DCM. The combined organic layers were filtered and the solution was concentrated under reduced pressure. The crude mixture was purified by flash chromatography (EtOAc/heptanes) to obtain Intermediate 28 (0.4 g, 80%). 1H NMR (600 MHz, CDCh) δ 8.19 (d, 1H), 7.61 (s, 1H), 7.20-7.12 (m, 1H), 3.93 (s, 3H), 3.57-3.50 (m, 1H), 3.43 (dd,
6.3 Hz, 1H), 3.30 (s, 3H), 2.22 (d, 1H), 1.89-1.43 (m, 7H).
Intermediate 29 tert-Butyl 3-fluoro-4-nitrobenzoate
3-Fluoro-4-nitrobenzoic acid (2.60 g, 14.0 mmol) was dissolved in THF (30 mL), the mixture treated with Boc anhydride (6.13 g, 28.1 mmol) and DMAP (525 mg, 4.21 mmol), and then stirred at RT. A thick slurry quickly formed and was then stirred for 3 h at 40 °C during which time the slurry became a tan solution. After concentrating the reaction mixture under reduced pressure, the residue was dissolved in EtOAc, adsorbed onto silica gel and then eluted through a short pad of silica gel with 50% EtOAc/Heptane.
The filtrate was concentrated under reduced pressure to yield Intermediate 29 (8.88 g,
68%) as a yellow solid. 1H NMR (600 MHz, CDCb) δ 8.05-8.09 (m, 1H), 7.86-7.90 (m,
2H), 1.61 (s, 9H).
Intermediate 30
5-Bromo-N3-methylpyridine-2,3-diamine
Intermediate 31
5-Bromo-N3,6-dimethylpyridine-2,3-diamine
Intermediate 30 was synthesized according to the literature procedure (Choi, J. Y. et al. J. Med. Chem. 2012, 55, 852-870). Intermediate 31 was synthesized using the same method.
Intermediate 32
Methyl 2-(chloromethyl)-1-((1-methyl-1H-imidazol-5-yl)methyl)-1H-benzo[d]imidazole-6carboxylate
Step 1
To a colorless solution of methyl 3-fluoro-4-nitrobenzoate (1.0 g, 5.0 mmol) in DMF (10 mL) was added (1-methyl-1 H-imidazol-5-yl)methanamine (670 mg, 6.0 mmol) and EtsN (762 mg, 7.53 mmol), slowly. The solution was stirred at 60 °C for 16 h. The reaction mixture was poured into H2O (30 mL) and extracted with DCM (3 x 30 mL). The combined organic extracts were dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (20% MeOH/DCM). The obtained yellow solid was triturated with 30:1 PE/EtOAc to deliver methyl 3-(((1methyl-1 H-imidazol-5-yl)methyl)amino)-4-nitrobenzoate (1.2 g, 82%) as a yellow solid. 1H
NMR (CDCh) δ 8.26 (d, 1H), 7.96 (br s, 1H), 7.71 (d, 1H), 7.50 (s, 1H), 7.35 (dd, 1H),
7.13 (s, 1H), 4.55 (d, 2H), 3.97 (s, 3H), 3.68 (s, 3H).
Step 2
To a yellow suspension of methyl 3-(((1-methyl-1 H-imidazol-5-yl)methyl)amino)-4nitrobenzoate (5.46 g, 18.8 mmol) in MeOH (160 mL) was added wet 10% Pd/C (1 g). The mixture was was stirred under 1 atm H2 for 36 h at 20 °C. The reaction mixture was filtered and the filter cake rinsed with MeOH (200 mL). The filtrate was concentrated under reduced pressure to deliver methyl 4-amino-3-(((1 -methyl-1 H-imidazol-5yl)methyl)amino)benzoate (4.8 g, 98%) as a brown solid. 1H NMR (DMSO-d6) δ 7.56 (s, 1H), 7.18 (d, 1H), 7.13 (s, 1H), 6.87 (s, 1H), 6.55 (d, 1H), 5.50 (s, 2H), 4.84 (t, 1H), 4.23 (d, 2H), 3.73 (s, 3H), 3.63 (s, 3H).
Step 3
A red mixture of methyl 4-amino-3-(((1 -methyl-1 H-imidazol-5yl)methyl)amino)benzoate (780 mg, 3.00 mmol) and 2-hydroxyacetic acid (342 mg, 4.49 mmol) in mesitylene (8 mL) was stirred at 140 °C under N2 for 14 h and at 25 °C for 48 h. The clear yellow solution was decanted off to give a brown residue that was dissolved in MeOH (50 mL) and concentrated under reduced pressure. The crude product was purified by flash chromatography (20% MeOH/DCM) to give methyl 2-(hydroxymethyl)-1-((1methyl-1 H-imidazol-5-yl)methyl)-1 H-benzo[d]imidazole-6-carboxylate (318 mg, 35%) as a yellow foam. 1H NMR (DMSO-d6) δ 8.13 (d, 1H), 7.83 (dd, 1H), 7.71 (d, 1H), 7.60 (s, 1H), 6.59 (s, 1H), 5.69 (s, 2H), 4.76 (s, 2H), 3.91 (s, 1H), 3.84 (s, 3H), 3.53 (s, 3H).
Step 4
To a yellow suspension of 2-(hydroxymethyl)-1 -((1 -methyl-1 H-imidazol-5yl)methyl)-1H-benzo[d]imidazole-6-carboxylate (500 mg, 1.66 mmol) in DCM (10 mL) and DMF (3 mL) was added SOCI2 (990 mg, 0.60 mL, 8.32 mmol), dropwise, at RT. The reaction mixture was stirred at RT for 1 h, concentrated under reduced pressure and the résultant brown residue was triturated with DCM (10 mL). The solids were collected by filtration, rinsed with DCM (5 mL) and dried under vacuum to give Intermediate 32 (431 mg, 73%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.17 (s, 1H), 8.31 (s, 1H), 7.91-7.99 (m, 1H), 7.77-7.87 (m, 1H), 7.11 (s, 1H), 5.92 (s, 2H), 5.13 (s, 2H),) 3.87 (s, 3H), 3.86 (s, 3H); MS(ES+): 319.0 (M+H).
Intermediate 33
5-Chloro-2-(chloromethyl)-3-methyl-3H-imidazo[4,5-b]pyridine
Step 1
To a suspension of 2,6-dichloro-3-nitropyridine (200 g, 1.04 mol) and Na2COs (132 g, 1.24 mol) in EtOH (1 L) was added 2.0 M MeNH2 in THF (622 mL,1.24 mol), dropwise, at 0 °C via syringe. After the addition, the reaction mixture was stirred at 18 °C for 6 h. The yellow mixture was filtered and the filtrate concentrated under reduced pressure to give a yellow solid. The crude product was purified by flash chromatography (PE/EtOAc 0-5%) to afford 6-chloro-N-methyl-3-nitropyridin-2-amine (158 g, 81% yield) as a yellow solid. 1H NMR (DMSO-d6) δ 8.72 (br s, 1 H), 8.41 (d, 1 H), 6.76 (d, 1 H), 3.00 (d, 3H).
Step 2
To a mixture of 6-chloro-N-methyl-3-nitropyridin-2-amine (15.8 g, 84.2 mmol) in AcOH (100 mL) was added iron powder (15.4 g, 276 mmol). The yellow mixture was stirred at 80 °C for 3 h. The reaction was cooled to RT and filtered. The filtercake was washed with EtOAc (2 x 100). The combined organic layers were concentrated under reduced pressure and the crude product was purified by flash chromatography (120 g silica gel, 50% EtOAc/PE) to afford 3-amino-6-chloro-2-methylaminopyridine (8.40 g, 63% yield) as a brown solid. 1H NMR (CDCb) δ 6.80 (d, 1 H), 6.50 (d, 1 H), 3.39 (br s, 2H), 3.01 (s, 3H).
Step 3
To a solution of 3-amino-6-chloro-2-methylaminopyridine (50.0 g, 317 mmol) in dioxane (1.2 L) was added chloroacetyl chloride (55.5 mL, 698 mmol) and the mixture was stirred at 15 °C for 50 min. The brown mixture was concentrated under reduced pressure to give a brown solid which was taken up in TFA (1.2 L) and stirred at 80 °C for 60 h. The mixture was concentrated under reduced pressure to give a brown oil. The oil was diluted with EtOAc (1 L) and neutralized with sat. aq. NaHCOs. When CO2 évolution subsided the layers were separated and the aq. layer extracted with EtOAc (200 mL). The organic extracts were combined, dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (10-25% EtOAc/PE gradient) to afford Intermediate 33 (61.0 g, 79%) yield as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.13 (d, 1H), 7.37 (d, 1H), 5.11 (s, 2H), 3.84 (s, 3H).
Intermediate 34
Methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -(2methoxyethyl)-1H-benzo[d]imidazole-6-carboxylate
To a mixture of Intermediate 3 (13.0 g, 23.8 mmol) and Intermediate 19 (6.72 g, 23.8 mmol) and K2CO3 (16.4 g, 119 mmol) in MeCN (200 mL) was stirred at 50 °C for 12 h. The mixture was cooled to RT and poured into water (200 mL). The mixture was extracted with EtOAc (3 x 500 mL) and the combined organic layers were washed with brine (2 x 500 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (120 g, silica gel, 0-2% MeOH/DCM gradient) to deliver Intermediate 34 (12.5 g, 93%) as a pale yellow solid. 1H NMR (400 MHz, CDCh) δ 8.16 (s, 1H), 7.97 (d, 1H), 7.75 (d, 1H), 7.50 (t, 1H), 7.44 (t, 1H), 7.11 (m, 2H), 6.73 (d, 1H), 6.61 (d, 1H), 5.41 (s, 2H), 4.64 (t, 2H), 3.96 (s, 3H), 3.92 (s, 2H), 3.79 (t, 2H), 3.31 (s, 3H), 2.99 (d, 2H), 2.58-2.67 (m, 1H), 2.29 (t, 2H), 1.78-1.91 (m, 4H).
Intermediate 35
Methyl 1-(2-methoxyethyl)-2-((4-(6-oxo-1,6-dihydropyridin-2-yl)piperidin-1-yl)methyl)1H-benzo[d]imidazole-6-carboxylate
To a stirred suspension of Intermediate 34 (500 mg, 0.88 mmol) in MeOH (10 mL) was added 4 M HCl in dioxane (4.5 ml, 20 mmol). The reaction was heated to 70 °C and stirred for 18 h. The mixture was then cooled to RT and concentrated under reduced pressure. The residue was taken up in sat. aq. NaHCOs and extracted with DCM (3 x).
The combined organic extracts were washed with brine, dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was dissolved in a minimum of DCM and PE was added slowly until precipitate formed. The mixture was stirred to granulate solids for 2 h. The solids were isolated by filtration and rinsed with PE to give Intermediate 35 (280 mg, 75%) as an off-white solid. 1H NMR (600 MHz, CDCh) δ 11.43 (br s, 1H), 8.13 (s, 1H), 7.96 (d, 1H), 7.73 (d, 1H), 7.36 (dd, 1H), 6.39 (d, 1H), 6.02 (d, 1H), 4.61 (t, 2H), 3.96 (s, 3H), 3.92 (s, 2H), 3.75 (t, 2H), 3.29 (s, 3H), 2.99 (d, 2H), 2.51 (t, 1H), 2.30 (t, 2H), 1.93 (d, 2H), 1.72 (qd, 2H).
Intermediate 36
Methyl 2-((4-(6-chloropyridin-2-yl)piperidin-1 -yl)methyl)-1 -methyl-1 H-benzo[d]imidazole-
6-carboxylate
Step 1
To a colorless solution of Intermediate 2 (6.00 g, 20.2 mmol) in DCM (60 mL) was added 4 M HCI/EtOAc (60 mL) and the solution turned turbid. The suspension was stirred at 20 °C for 2 h, and then concentrated under reduced pressure to give 2-chloro-6(piperidin-4-yl)pyridine hydrochloride (5.45 g, 99%) as a solid. 1H NMR (DMSO-d6) δ 9.32 (br s, 1 H), 8.95 (br s, 1 H), 7.83 (t, 1 H), 7.37 (d, 1 H), 7.31 (d, 1 H), 3.31 (d, 2H), 2.89-3.06 (m, 3H), 1.85-2.04 (m, 4H).
Step 2
To a mixture of 2-chloro-6-(piperidin-4-yl)pyridine hydrochloride (5.45 g, 20.2 mmol) and K2CO3 (8.38 g, 60.6 mmol) in DMF (50 mL) was added ethyl 2-bromoacetate (4.05 g, 24.3 mmol). The mixture was stirred at 20 °C for 2 h and then diluted with EtOAc (300 mL) and washed with water (100 mL). The organic layer was washed with brine (200 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (EtOAc/PE 5-15% gradient) to afford ethyl 2-(4-(6chloropyridin-2-yl)piperidin-1-yl)acetate (5.44 g, 95%) as a yellow oil. 1H NMR (CDCh) δ 7.59 (t, 1H), 7.16 (d, 1H), 7.11 (d, 1H), 4.21 (q, 2H), 3.26 (s, 2H), 3.08 (d, 2H), 2.72 (tt, 1H), 2.31 (dt, 2H), 1.82-2.02 (m, 4H), 1.29 (t, 3H).
Step 3
Το a solution of ethyl 2-(4-(6-chloropyridin-2-yl)piperidin-1-yl)acetate (5.44 g, 19.2 mmol) in EtOH (50 mL) was added 5 M NaOH (11.5 mL, 57.5 mmol). The solution was stirred at 25 °C for 2 h. The reaction mixture was quenched with 1 M HCl and extracted with DCM/MeOH (10:1, 5 x 80 mL). The combined organic extracts were dried over MgSO4, filtered and concentrated under reduced pressure to afford 2-(4-(6-chloropyridin2-yl)piperidin-1-yl)acetic acid (4.50 g, 92%) as a yellow solid. 1H NMR (CD3OD) δ 7.71 (t, 1H), 7.24 (d, 2H), 3.20 (d, 2H), 3.13 (br s, 2H), 2.70-2.83 (m, 1H), 2.29 (brs, 2H), 1.832.06 (m, 4H).
Step 4
To a yellow solution of 2-(4-(6-chloropyridin-2-yl)piperidin-1-yl)acetic acid (4.50 g, 17.7 mmol) and Intermediate 16 (3.50 g, 19.4 mmol) in DMF (50 mL) was added HATU (8.06 g, 21.2 mmol) at RT. The reaction mixture was stirred at 15 °C for 20 min, and then EtsN (3.58 g, 35.3 mmol) was added. The yellow mixture was stirred at 50 °C for 2 h. The resulting brown mixture was poured into water (160 mL) and extracted with EtOAc (3 x 100 mL). The combined organic extracts were washed with brine (3 x 100 mL). The organic layer was dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (MeOH/DCM 0-5% gradient) to afford methyl 4-amino-3-(2-(4-(6-chloropyridin-2-yl)piperidin-1 -yl)-N-methylacetamido)benzoate (7.37 g, quant.) as a yellow oil. LC-MS(ES+): 417.1 (M+H).
Step 5
A mixture of methyl 4-amino-3-(2-(4-(6-chloropyridin-2-yl)piperidin-1-yl)-N-methylacetamido)benzoate (7.37 g, 17.7 mmol) in AcOH (100 mL) was stirred at 60 °C for 16 h. The brown mixture was concentrated under reduced pressure to give a brown oil which was taken up in EtOAc (300 mL) and washed with sat. aq. NaHCOs (100 mL). The organic layer was washed with brine (3 x 100 mL), dried over MgSO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (EtOAc/PE 0-50% gradient) to afford Intermediate 36 (3.51 g, 50%) as a yellow solid. 1H NMR (CDCI3) δ 1H NMR (400 MHz, CDCI3) δ 8.14 (s, 1 H), 7.98 (d, 1 H), 7.75 (d, 1 H), 7.58 (t, 1H), 7.17 (d, 1H), 7.10 (d, 1H), 3.99 (s, 3H), 3.97 (s, 3H), 3.95 (brs, 2H), 3.09 (d, 2H), 2.77 (brs, 1H), 2.43 (brs, 2H), 1.83-2.04 (m, 4H); LC-MS(ES+): 399.1 (M+H).
Example 1A-01
2-((4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -y l)methyl)-1 -methyl-1 Hbenzo[d]imidazole-6-carboxylic acid hydrochloride
Step 1
Intermediate 17 (115 mg, 0.482 mmol), Intermediate 3 (178 mg, 0.554 mmol) and K2CO3 (133 mg, 0.96 mmol) were combined in MeCN (4.8 mL) and the mixture was allowed to stir at 35 °C for 3 h. The reaction was cooled to RT, diluted with EtOAc and extracted with water. The organic layer was dried over MgSO4, filtered and concentrated under reduced pressure. The résultant crude product was purified by flash chromatography (24 g silica, 0-100% EtOAc/heptane) to deliver 215 mg of methyl 2-((4(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -methyl-1 Hbenzo[d]imidazole-6-carboxylate (85%) as a white foam. 1H NMR (400 MHz, CDCI3) δ 8.10 (brs, 1H), 7.95 (d, 1H), 7.72 (d, 1H), 7.51-7.36 (m, 2H), 7.07 (br s, 2H), 6.71 (br s, 1 H), 6.57 (d, 1 H), 5.38 (br s, 2H), 3.95 (s, 3H), 3.93 (s, 3H), 3.84 (br s, 2H), 2.97 (br s, 2H), 2.59 (br s, 1 H), 2.27 (br s, 2H), 1.75-1.93 (m, 4H); LC-MS(ES+): 523.3 (M+H).
Step 2
Methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 methyl-1 H-benzo[d]imidazole-6-carboxylate (215 mg, 0.411 mmol) was suspended in MeOH (4 mL) and treated with 2 M NaOH (820 pL, 1.64 mmol). The reaction was allowed to stir at 40 °C for 3 h and 14 h at RT. The reaction was heated back up to 40 °C and acidified with 1 M HCl (2.50 mL, 2.50 mmol). The mixture was allowed to cool to RT and as a precipitate began to form, a N2 steam was blown over the reaction to remove approximately half of the MeOH. The solid was then collected by filtration, washed with H2O (2x2 mL), and then dried under N2 to deliver Example 1A-01 (155 mg, 69%) as a solid. 1H NMR (600 MHz, DMSO-d6) δ 12.74 (brs, 1H), 8.15 (s, 1H), 7.79 (d, 1H), 7.587.65 (m, 2H), 7.54 (t, 1H), 7.43 (d, 1H), 7.27 (d, 1H), 6.85 (d, 1H), 6.65 (d, 1H), 5.34 (s,
2H), 3.94 (s, 3H), 3.82 (s, 2H), 2.93 (d, 2H), 2.57 (t, 1H), 2.19 (t, 2H), 1.73-1.80 (m, 2H),
1.64-1.73 (m, 2H); LC-MS(ES+): 509.2 (M+H).
The compounds listed in Table 1 below were prepared using procedures analogous to those described above for the synthesis of Compound 1A-01 using the 5 appropriate starting materials which are available commercially, prepared using préparations well-known to those ski lied in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using methods well known to those skilled in the art and may include silica gel chromatography, HPLC, or crystallization from the reaction mixture. The final compounds may hâve been 10 isolated as neutrals or acid or base salts.
Table 1
Ex. # Name NMR data/LC-MS data
1A-02 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi pe rid i n -1 -yl)methyl]-1 -(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.30 (s, 1H), 7.99 (d, 1H), 7.71 (d, 1H), 7.60 (t, 1H), 7.50 (t, 1H), 7.17-7.25 (m, 2H), 6.86 (d, 1H), 6.67 (d, 1H), 5.42 (s, 2H), 4.68 (t, 2H), 4.25 (br s, 2H), 3.81 (t, 2H), 3.35 (s, 3H), 2.67-2.88 (m, 3H), 2.00 (brs, 4H). LC-MS(ES+): 556.3 (M+H).
1A-03 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.41 (d, 1H), 8.12 (dd, 1H), 7.82 (d, 1H), 7.65 (m, 1H), 7.60-7.48 (m, 3H), 6.43 (d, 1 H), 6.27 (d, 1 H), 5.48 (s, 2H), 4.68 (m, 2H), 4.57 (d, 1H), 4.17-4.01 (m, 2H), 3.80 (m, 2H), 3.52 (m, 3H), 3.31 (s, 3H), 3.303.18 (m, 1H), 1.43 (d, 3H). LC-MS(ES+): 559.2 (M+H).
Ex. # Name NMR data/LC-MS data
1A-04 2-[(4-{6-[(4-chloro-2- fluorobenzyl)oxy]-5fluoropyridin-2-yl}piperidin-1 yl)methyl]-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.32 (s, 1H), 7.99-8.11 (m, 1H), 7.73-7.84 (m, 1H), 7.50-7.57 (m, 1H), 7.43-7.49 (m, 1H), 7.19-7.29 (m, 2H), 6.89-6.99 (m, 1H), 5.29-5.65 (m, 2H), 4.78-4.81 (m, 2H), 4.63 (s, 2H), 3.83-3.96 (m, 2H), 3.723.78 (m, 2H), 3.35-3.46 (m, 2H), 3.30 (s, 3H), 2.95-3.13 (m, 1H), 2.21 (d, 4H). LC-MS(ES+): 570.0 (M+H).
1A-05 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]-3fluoropyridin-2-yl}piperazin1-yl)methyl]-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid LCMS E(4-302) XBridge C18 2.1 x 50 mm, 5 pm; Mobile phase: 1.0% MeCN in water (0.1% TFA) to 5% MeCN in water (0.1% TFA) in 0.6 min; then from 5.0% MeCN in water (0.1% TFA) to 100% MeCN (0.1% TFA) in 3.4 min; then back to 1.0% MeCN in water (0.1% TFA) until 4.3 min, and hold 0.7 min. Flow rate : 0.8 ml/min. Rétention time: 2.95 min. LC-MS(ES+): 572.2 (M+H).
1A-06 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]-3fluoropyridin-2-yl}-2methylpiperazin-1 -y I] methy I}1-(2-methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.13 (dd, 1H), 7.83 (d, 1H), 7.51-7.37 (m, 2H), 7.297.18 (m, 2H), 6.36 (dd, 1H), 5.38 (s, 2H), 4.69 (q, 2H), 4.56 (d, 1H), 3.97 (m, 2H), 3.80 (t, 2H), 3.56 (m, 3H), 3.29 (m, 1H), 1.44 (d, 3H). LC-MS(ES+): 586.0 (M+H).
Ex. # Name NMR data/LC-MS data
1A-07 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]-5fluoropyridin-2-yl}-2methylpiperazin-1 -y I] methy I}1-(2-methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.13 (dd, 1H), 7.83 (d, 1H), 7.50 (m, 1H), 7.40 (dd, 1H), 7.29-7.20 (m, 2H), 6.38 (dd, 1H), 5.47 (s, 2H), 4.69 (m, 2H), 4.55 (d, 1H), 4.06 (dd, 2H), 3.80 (m, 2H), 3.55 (brs, 2H), 3.43 (d, 1H), 3.24 (d, 1H), 1.45 (d, 3H). LC-MS(ES+): 586.1 (M+H).
1A-08 2-{[(2S)-4-{6-[(4- cyanobenzyl)oxy]-5fluoropyridin-2-yl}-2methylpiperazin-1 -y I] methyl}1-(2-methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.42 (d, 1H), 8.13 (dd, 1H), 7.82 (d, 1H), 7.77-7.69 (m, 2H), 7.62 (d, 2H), 7.42 (dd, 1H), 6.37 (dd, 1H), 5.52 (s, 2H), 4.69 (m, 2H), 4,52 (d, 1H), 3.99 (t, 2H), 3.80 (m, 2H), 3.56-3.32 (m, 3H), 3.32 (m, 2H), 3.27-3.10 (m, 2H), 1.41 (d, 3H). LC-MS(ES+): 559.2 (M+H).
1A-09 2-{[4-(6-{[(4-cyano-2fluorophenyl)(methyld2)]oxy}pyridin-2y I )pi pe rid i n-1 -yl]methyl}-1 [(2S)-oxetan-2-ylmethyl]-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.33 (d, 1 H), 7.99 (dd, 1H), 7.73-7.49 (m, 5H), 6.86 (d, 1H), 6.70 (d, 1H), 5.30 (d, 1H), 4.81-4.71 (m, 1H), 4.66 (m, 1H), 4.50 (m, 1H), 4.08 (d, 1H), 3.97 (d, 1H), 3.11 (d, 1H), 3.00 (d, 1H), 2.83 (m, 1H), 2.67 (m, 1H), 2.56 (m, 1H), 2.36 (m, 2H), 1.86 (m, 4H). LC-MS(ES+): 558.2 (M+H).
1A-1O 2-({4-[6-(benzyloxy)pyridin-2y l] p i pe rid i n-1 -yl}methyl)-1 -(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (dd, 1H), 8.05 (dd, 1H), 7.81 (dd, 1H), 7.67 (dd, 1H), 7.51- 7.42 (m, 2H), 7.42-7.34 (m, 2H), 7.34-7.25 (m, 1H), 6.93 (d, 1H), 6.75 (dd, 1H), 5.43 (s, 2H), 4.82 (s, 2H), 4.64 (t, 2H), 3.91 (brs, 2H), 3.77 (m, 2H), 3.43 (t, 2H), 3.15-3.02 (m, 1H), 2.27 (m, 4H). LC-MS(ES+): 501.3 (M+H).
Ex. # Name NMR data/LC-MS data
1A-11 2-[(4-{6-[(4- cyanobenzyl)oxy]pyridin-2y l}pi perazi n-1 -yl)methyl]-1 (2-methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.41 (d, 1H), 8.11 (dd, 1H), 7.82 (d, 1H), 7.76-7.67 (m, 2H), 7.57 (dd, 3H), 6.43 (d, 1H), 6.30 (d, 1H), 5.44 (s, 2H), 4.68 (m, 4H), 3.78 (m, 6H), 3.37 (m, 4H), 3.31 (s, 3H). LC-MS(ES+): 527.2 (M+H).
1A-12 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-3,3-dimethylpiperazin-1 yl)methyl]-1 -(2methoxyethyl)-1Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.46 (d, 1H), 8.15 (dd, 1H), 7.85 (d, 1H), 7.70 (t, 1H), 7.48 (t, 1H), 7.29-7.19 (m, 2H), 6.82 (d, 1H), 6.69 (d, 1H), 5.42 (s, 2H), 4.77 (t, 2H), 4.52 (s, 2H), 3.82 (m, 2H), 3.69 (m, 2H), 3.27 (m, 2H), 3.10 (m, 2H), 1.40 (s, 6H). LC-MS(ES+): 582.3 (M+H).
1A-13 2-{[(3S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-methylpiperazin-1 yl]methyl}-1 -(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.13 (dd, 1H), 7.82 (d, 1H), 7.48 (m, 2H), 7.26-7.14 (m, 2H), 6.31 (d, 1H), 6.17 (d, 1H), 5.45-5.28 (m, 2H), 4.76 (m, 2H), 4.68 (m, 1H), 4.47-4.31 (m, 2H), 4.12 (m, 1H), 3.82 (m, 2H), 3.26 (m, 3H), 2.90 (m, 1H), 2.77 (m, 2H), 1.25 (d, 3H). LCMS(ES+): 568.0 (M+H).
1A-14 2-{[(3R)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-methylpiperazin-1 yl]methyl}-1-(2methoxyethyl)-1Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.45 (s, 1 H), 8.14 (d, 1H), 7.83 (d, 1H), 7.55-7.42 (m, 2H), 7.277.16 (m, 2H), 6.32 (d, 1H), 6.18 (d, 1H), 5.455.29 (m, 2H), 4.79-4.64 (m, 3H), 4.50-4.38 (m, 2H), 4.14 (d, 1H), 3.82 (t, 2H), 3.00-2.78 (m, 3H), 1.27 (d, 3H). LC-MS(ES+): 568.3 (M+H).
Ex. # Name NMR data/LC-MS data
1A-15 2-{[(3R)-4-{6-[(4-chloro-2- fluorobenzyl)oxy]pyridin-2yl}-3(hydroxymethyl)piperazin-l yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.45 (d, 1H), 8.14 (dd, 1H), 7.85 (d, 1H), 7.50 (m, 2H), 7.27-7.17 (m, 2H), 6.36 (d, 1H), 6.21 (d, 1H), 5.43-5.28 (m, 2H), 4.78-4.70 (m, 2H), 4.68 (m, 1H), 4.60 (s, 2H), 4.25 (m, 1H), 3.98 (dd, 1H), 3.90-3.76 (m, 4H), 3.62-3.45 (m, 2H), 3.11 (m, 2H). LC- MS(ES+): 584.3 (M+H).
1A-16 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperid in-1 -y l)methyl]-1 [(1-methyl-1 H-imidazol-5yl)methyl]-1 Hbenzimidazole-6-carboxylic acid Column: Waters Atlantis dC18 4.6 x 50 mm, 5 pm; Mobile phase A: 0.05% TFA in water (v/v); Mobile phase B: 0.05% TFA in MeCN (v/v); Gradient: 95% H2O/5% MeCN linear to 5% H2O/95% MeCN in 4.0 min, hold at 5% H2O/95% MeCN to 5.0 min. Flow: 2 mL/min. Rétention time: 2.05 min. LC-MS(ES+): 580.4 (M+H).
1A-17 2-[(4-{6-[(2,4- difluorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -y I) m ethy I]-1 [(1 -methyl-1 H-imidazol-5- yl)methyl]-1 H- benzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.01 (d, 1H), 8.31 (d, 1H), 8.09 (dd, 1H), 7.89 (d, 1H), 7.67 (t, 1H), 7.58 (m, 1H), 7.09 (d, 1H), 7.06-6.89 (m, 3H), 6.73 (d, 1H), 5.89 (s, 2H), 5.45 (s, 2H), 4.85 (s, 2H), 4.00 (m, 5H), 3.42 (m, 2H), 3.14-2.99 (m, 1H), 2.40-2.17 (m, 4H). LC-MS(ES+): 573.2 (M+H).
Ex. # Name NMR data/LC-MS data
1A-18 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -yl)methyl]-1 [(4-propyl-4H-1,2,4-triazol-3yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CDCb) δ 8.13 (s, 1H), 8.09 (s, 1H), 7.95 (d, 1 H), 7.74 (d, 1H), 7.49 (t, 1H), 7.42 (t, 1H), 7.09 (t, 2H), 6.71 (d, 1H), 6.60 (d, 1 H), 5.93 (br s, 2H), 5.37 (s, 2H), 4.08 (br s, 1H), 3.87 (t, 2H), 3.50 (s, 1H), 3.20 (d, 2H), 2.66 (t, 1H), 2.47 (brs, 2H), 2.05 (s, 1H), 1.73-2.01 (m, 4H), 1.55 (sxt, 2H), 0.89 (t, 3H), 0.74 (t, 3H). LC-MS(ES+): 618.6 (M+H).
1A-19 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methyl}-1 -[(2S)-oxetan-2y Imethy l]-1 H-benzimidazole6-carboxylic acid 1H NMR (DMSO-d6) δ 12.74 (br s, 1 H), 8.27 (s, 1H), 7.81 (d, 1H), 7.66 (d, 1H), 7.37-7.57 (m, 3H), 7.29 (d, 1 H), 6.33 (d, 1 H), 6.08 (d, 1 H), 5.30 (s, 2H), 5.17 (brs, 1H), 4.77 (brs, 2H), 4.42-4.57 (m, 1H), 4.37 (d, 1H), 4.28 (d, 1H), 3.86 (d, 1H), 3.76 (d, 1H), 3.66 (d, 1H), 3.02 (t, 1H), 2.79-2.93 (m, 1H), 2.60-2.77 (m, 3H), 2.21- 2.45 (m, 2H), 1.12 (d, 3H). LC-MS(ES+): 580.1 (M+H).
1A-20 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -yl)methyl]-1 [(4-methyl-4H-1,2,4-triazol-3yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3CN) δ 8.39 (s, 1H), 8.24 (s, 1H), 8.08-7.96 (m, 1H), 7.83 (d, 1H), 7.80- 7.63 (m, 2H), 7.55 (d, 2H), 6.92 (d, 1H), 6.75 (d, 1H), 5.78 (s, 2H), 5.60 (s, 2H), 4.72-4.49 (m, 2H), 3.89 (s, 3H), 3.72 (m, 2H), 3.29 (m, 2H), 3.03 (m, 1H), 2.21-2.11 (m, 4H). LC-MS(ES+): 581.3 (M+H).
Ex. # Name NMR data/LC-MS data
1A-21 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -y l)methyl]-1 [(2S)-tetrahydrofuran-2ylmethy l]-1 H-benzimidazole6-carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.33 (s, 1 H), 8.02 (d, 1H), 7.78 (d, 1H), 7.68 (d, 2H), 7.58 (dd, 2H), 6.94 (d, 1H), 6.78 (d, 1H), 5.54 (s, 2H), 4.80- 4.72 (m, 2H), 4.67 (d, 1H), 4.43 (dd, 1H), 4.22 (q, 1H), 3.89 (dt, 3H), 3.75 (q, 1H), 3.37 (d, 2H), 3.04 (t, 1H), 2.18 (d, 5H), 1.93 (dd, 2H), 1.67 (dd, 1H). LC-MS(ES+): 570.6 (M+H).
1A-22 rac 2-{[(3S,4S)-4-{6-[(4chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-f luoropiperid in-1 yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.46 (d, 1H), 8.15 (dd, 1H), 7.82 (d, 1H), 7.67 (dd, 1H), 7.52 (t, 1H), 7.30-7.19 (m, 2H), 6.96 (d, 1H), 6.76 (d, 1H), 5.45 (s, 2H), 4.76 (t, 2H), 4.44 (s, 2H), 3.83 (t, 2H), 3.59 (m, 1H), 3.31-3.20 (m, 1H), 3.04 (m, 1H), 2.92-2.73 (m, 2H), 2.32-1.89 (m, 3H). LC- MS(ES+): 571.1 (M+H).
1A-23 rac-2-{[(3S,4S)-4-{6-[(4chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-hydroxypiperidin-1yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.37 (d, 1H), 8.07 (dd, 1H), 7.81 (d, 1H), 7.68 (dd, 1H), 7.54 (t, 1H), 7.32-7.21 (m, 2H), 6.98 (d, 1H), 6.78 (d, 1H), 5.51-5.37 (m, 2H), 4.79 (s, 2H), 4.67 (t, 2H), 4.38 (m, 1H), 3.86-3.73 (m, 4H), 3.16 (m, 1H), 2.95 (s, 1H), 2.37-2.16 (m, 2H). LCMS(ES+): 569.3 (M+H).
Ex. # Name NMR data/LC-MS data
1A-24 rac-2-{[(3R,4S)-4-{6-[(4chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-hydroxypiperidin-1 yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (dd, 1H), 8.02 (dd, 1H), 7.78 (dd, 1H), 7.71 (dd, 1H), 7.48 (t, 1H), 7.29-7.21 (m, 2H), 6.99 (dd, 1H), 6.81 (dd, 1H), 5.46-5.36 (m, 2H), 5.24 (d, 1H), 4.90 (m, 1H), 4.69 (m, 2H), 4.26 (m, 1H), 3.99 (dd, 1H), 3.94-3.81 (m, 3H), 3.78 (m, 2H), 3.63 (m, 1H), 3.30 (s, 3H), 2.56-2.40 (m, 2H). LCMS(ES+): 569.1 (M+H).
1A-25 rac-2-{[(3R,4R)-4-{6-[(4chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-methy Ipiperid i n-1 yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.32 (d, 1H), 8.00 (dd, 1H), 7.78 (d, 1H), 7.70 (dd, 1H), 7.46 (m, 1H), 7.26 (m, 2H), 6.94 (d, 1H), 6.81 (d, 1H), 5.37 (s, 2H), 4.82 (s, 2H), 4.64 (m, 2H), 4.03 (m, 1H), 3.88 (m, 1H), 3.75 (m, 2H), 3.67 (m, 1H), 3.54 (m, 1H), 3.27 (m, 4H), 2.58 (m, 1H), 2.34 (m, 2H), 0.84 (d, 3H). LC-MS(ES+): 567.1 (M+H).
1A-26 rac-2-{[(3S,4R)-4-{6-[(4chloro-2fluorobenzyl)oxy]pyridin-2yl}-3-methy Ipiperid i n-1 yl]methyl}-1-(2methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.36 (s, 1H), 8.06 (dd, 1H), 7.83 (d, 1H), 7.68 (t, 1H), 7.53 (t, 1H), 7.34-7.26 (m, 2H), 6.92 (d, 1H), 6.77 (d, 1H), 5.47 (q, 2H), 4.85 (s, 2H), 4.65 (t, 2H), 3.93 (d, 1H), 3.84 (d, 1H), 3.79 (t, 2H), 3.47 (m, 1H), 3.35 (s, 3H), 3.10 (t, 1H), 2.66 (dt, 1H), 2.54 (br. m., 1H), 2.32 (dq, 1H), 2.07 (dd, 1H), 0.77 (d, 3H), LC-MS(ES+): 567.1 (M+H).
Ex. # Name NMR data/LC-MS data
1A-27 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n -1 -yl)methyl]-1 [(1R,2R)-2methoxycyclopentyl]-1 Hbenzimidazole-6-carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.24 (s, 1 H), 7.98 (d, 1H), 7.70 (d, 1H), 7.57 (t, 1H), 7.48 (t, 1H), 7.19 (ddd, 2H), 6.82 (d, 1H), 6.63 (d, 1H), 5.41 (s, 2H), 5.19 (q, 1H), 4.43 (q, 1H), 4.20 (d, 1H), 3.87 (d, 1H), 3.23 (s, 3H), 2.92 (d, 1H), 2.74- 2.64 (m, 1H), 2.55-2.46 (m, 1H), 2.41-2.27 (m, 4H), 2.14-1.77 (m, 8H). LC-MS(ES+): 593.5 (M+H).
1A-28 2-[(4-{6-[(4-chloro-2- fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 [(cis-3methoxycyclobutyl)methyl]- 1 H-benzimidazole-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.32 (s, 1 H), 8.01 (d, 1H), 7.78 (d, 1H), 7.65 (t, 1H), 7.51 (t, 1H), 7.26-7.19 (m, 2H), 6.93 (d, 1H), 6.73 (d, 1H), 5.45 (s, 2H), 4.80 (s, 2H), 4.45 (d, 2H), 3.92 (s, 2H), 3.79-3.72 (m, 1H), 3.43-3.36 (m, 2H), 3.21 (s, 3H), 3.08-3.02 (m, 1H), 2.46-2.17 (m, 7H), 1.75-1.70 (m, 2H). LC-MS(ES+): 593.6 (M+H).
1A-29 rac-2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -y l)methyl]-1 {[(1S,2S)-2methoxycyclopentyl]methyl}1 H-benzimidazole-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.36 (s, 1H), 8.01 (d, 1H), 7.78 (d, 1H), 7.65 (t, 1H), 7.51 (t, 1H), 7.23 (t, 2H), 6.92 (d, 1H), 6.73 (d, 1H), 5.45 (s, 2H), 4.78 (dd, 2H), 4.55 (dd, 1H), 4.38 (dd, 1H), 3.96-3.81 (m, 2H), 3.45-3.32 (m, 2H), 3.22 (s, 3H), 3.10-2.99 (m, 1H), 2.53-2.42 (m, 1H), 2.35- 2.08 (m, 5H), 2.02-1.54 (m, 6H). LC-MS(ES+): 607.7 (M+H).
Ex. # Name NMR data/LC-MS data
1A-30 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -y I )m eth y I]-1 {[(1R,2R)-2(methoxymethyl)cyclopropyl] methyl}-1 H-benzimidazole-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.34 (s, 1H), 8.02 (d, 1H), 7.78 (d, 1H), 7.66 (t, 1H), 7.51 (t, 1H), 7.31-7.17 (m, 2H), 6.93 (d, 1H), 6.73 (d, 1H), 5.45 (s, 2H), 4.51-4.20 (m, 2H), 3.91 (d, 2H), 3.43-3.35 (m, 2H), 3.21 (s, 3H), 3.04 (m, 1H), 2.39-2.15 (m, 4H), 1.30 (d, 5H), 0.90 (t, 1H), 0.79 (dt, 1H), 0.64 (dd, 1H). LC-MS(ES+): 593.5 (M+H).
Example 2A-01
2-((4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3-methyl-3H5 imidazo[4,5-b]pyridine-5-carboxylic acid hydrochloride
Step 1
A yellow mixture of Intermediate 3 (92.3 g, 119 mmol, 4 eq TFA sait), Intermediate 33 (25.9 g, 120 mmol) and K2CO3 (98.5 g, 713 mmol) in MeCN (300 mL) was stirred at 50 °C for 16 h. The yellow mixture was poured into water (300 mL) and extracted with 0 EtOAc (3 x 500 mL). The combined organic layers were washed with brine (500 mL), dried over MgSO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (MeOH/DCM 0-5% gradient) to afford 5-chloro-2((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3-methyl-3Himidazo[4,5-b]pyridine (59.0 g, 99%) as a yellow solid. 1H NMR (400 MHz, CDCI3) δ 7.92 5 (d, 1H), 7.49 (m, 1H), 7.43 (m, 1H), 7.21 (d, 1H), 7.10-7.13 (m, 1H), 7.09 (d, 1H), 6.72 (d,
1H), 6.60 (d, 1H), 5.40 (s, 2H), 3.98 (s, 3H), 3.84 (s, 2H), 2.97 (d, 2H), 2.51-2.73 (m, 1H), 2.29 (m, 2H), 1.73-1.97 (m, 4H).
Step 2
A yellow solution of 5-chloro-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-3-methyl-3H-imidazo[4,5-b]pyridine (59.0 g, 118 mmol), DPPP (6.80 g, 16.5 mmol), Pd(OAc)2 (3.65 g, 16.3 mmol) and Et3N (125 g, 1240 mmol) in MeOH (800 mL) and DMF (100 mL) was stirred at 80 °C under 50 psi CO for 16 h. The resulting orange solution was concentrated under reduced pressure to a brown oil, which was diluted with EtOAc (300 mL) and washed with water (200 mL). The organic layer was washed with brine (2 x 200 mL), dried over MgSO4, filtered and concentrated under reduced pressure. The crude product was combined with product from a similar 11 g scale reaction and purified by flash chromatography (50-100% EtOAc/PE gradient) to afford methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3-methyl3H-imidazo[4,5-b]pyridine-5-carboxylate (62.6 g, 85%) as a pale yellow solid. 1H NMR (400 MHz, CDCI3) δ 8.13 (d, 1H), 8.07 (d, 1H), 7.49 (t, 1H), 7.43 (t, 1H), 7.12 (t, 1H), 7.087.11 (m, 1H), 6.73 (d, 1H), 6.60 (d, 1H), 5.40 (s, 2H), 4.09 (s, 3H), 4.03 (s, 3H), 3.90 (s, 2H), 2.93-3.05 (m, 2H), 2.55-2.69 (m, 1H), 2.31 (dt, 2H), 1.79-1.97 (m, 4H).
Step 3
Methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3methyl-3H-imidazo[4,5-b]pyridine-5-carboxylate (57.0 g, 109 mmol) was suspended in MeOH (1 L) and treated with 2 M NaOH (218 mL). The slurry was stirred 5 min at RT and then heated at 85 °C for 3 h. The mixture was filtered through Celite® and the clear filtrate reheated to 70 °C. The reaction was acidified with 2 M HCl (272 mL) and then allowed to cool to RT. Solid formed and the slurry was allowed to stirfor 18 h at RT. The solids were collected by filtration to deliver Example 2A-01 (57.1 g, 96%) as an ivory white solid. 1H NMR (400 MHz, DMSO-d6) δ 13.20 (br s, 1H), 11.07 (br s, 1 H), 8.27 (d, 1 H), 8.07 (d, 1H), 7.57-7.78 (m, 2H), 7.47 (m, 1H), 7.32 (m, 1H), 6.92 (d, 1H), 6.74 (d, 1H), 5.40 (s, 2H), 4.84 (br s, 2H), 3.97 (s, 3H), 3.86 (br s, 2H), 3.37 (br s, 2H), 2.93 (br s, 1 H), 1.85-2.36 (m,
4H); ); LC-MS(ES+): 510.2 (M+H).
2-((4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyndin-2-yl)piperidin-1-yl)methyl)-1-(2methoxyethyl)-1 H-imidazo[4,5-b]pyridine-6-carboxylic acid hydrochloride ιοο
Example 2A-02
Step 1
To a flask containing solution of methoxy acetic acid (1.00 g, 11.1 mmol) in DMF (30 mL) was added HATU (6.33 g, 16.7 mmol) and EtsN (3.37 g, 33.3 mmol). After stirring for 20 min, 2,3-diamino-5-bromopyridine (2.3 g, 12 mmol) was added portion-wise, and the resulting reaction mixture stirred overnight. After 15 h, water was added, and the solution was extracted with EtOAc. The combined organic layers were dried, and the solvent removed under reduced pressure. The crude compound was purified by flash chromatography (0 to 80% EtOAc/heptane gradient) to yield N-(2-amino-5-bromopyridin3-yl)-2-methoxyacetamide (2.3 g, 80%). 1H NMR (400 MHz, CDCh) δ 8.09 (s, 1H), 8.06 (d, 1H), 8.03 (s, 1H), 7.83 (d, 1H), 4.08 (s, 2H), 3.53 (s, 3H); LC-MS(ES+): 260.2 (M+H).
Step 2
To a solution of N-(2-amino-5-bromopyridin-3-yl)-2-methoxyacetamide (3.3 g, 13 mmol) in THF was added 1 M solution of BH3 in THF (14 mL) over the period of 10 min, and stirred at RT overnight, Water was added to the reaction slowly to quench the excess borane, and the mixture then extracted with EtOAc. The EtOAc layer was dried and concentrated under reduced pressure. The crude product was dissolved in MeOH and HCl in dioxane (1.0 equiv) was added and stirred for 2 h. Excess methanol was removed under reduced pressure to obtain the crude product. The compound was purified by flash chromatography with a gradient ranging from 0 to 70% EtOAc in heptanes to obtain 5bromo-/\/3-(2-methoxyethyl)pyridine-2,3-diamine as a brown oil (1.1 g, 35%). 1H NMR (600 MHz, CDCh) δ 7.83 (d, 1 H), 6.95 (d, 1 H), 5.56 (s, 2H), 3.77 (t, 1 H), 3.66 (t, 2H), 3.42 (s, 3H), 3.22 (q, 2H); LC-MS(ES+): 246.1.
Step 3
5-Bromo-A/3-(2-methoxyethyl)pyridine-2,3-diamine (400 mg, 1.63 mmol) was taken up in 8 mL dioxane (8 mL) and treated with chloroacetyl chloride (0.284 mL, 3.58 mmol) The mixture was stirred at RT. The solvent was removed under reduced pressure and the résultant residue was taken up in TFA (8 mL) and stirred at 80 °C for 18 h. The reaction was cooled to RT and concentrated under reduced pressure. The résultant brown oil was taken up in EtOAc (50 mL) and neutralized with sat. aq. NaHCOs. After the CO2 évolution had subsided, the layers were separated and the aq. layer extracted with additional EtOAc (20 mL). The organic extracts were combined, dried over Na2SO4, filtered and
ΙΟΙ concentrated under reduced pressure. The résultant crude product was purified by flash chromatography (0-80% EtOAc/heptane gradient) to yield 6-bromo-2-(chloromethyl)-1(2-methoxyethyl)-1H-imidazo[4,5-b]pyridine (176 mg, 36%) as a tan solid. 1H NMR (600 MHz, CDCb) δ 8.59 (s, 1H), 7.90 (s, 1H), 4.93 (s, 2H), 4.45 (m, 2H), 3.72 (m, 2H), 3.29 (s, 3H); LC-MS(ES+): 306.1 (M+H).
Step 4
A mixture of Intermediate 3 (294 mg, 0.97 mmol, free base), 6-bromo-2(chloromethyl)-1-(2-methoxyethyl)-1 H-imidazo[4,5-b]pyridine (341 mg, 1.06 mmol), Kl (48 mg, 0.29 mmol) and N,AA-diisopropylethyl amine (0.51 mL, 0.97 mmol) in MeCN (8 mL) was stirred at 60 °C for 16 h. The mixture was poured into water and extracted with EtOAc. The organic layer was dried, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0-100% EtOAc/heptane gradient) to afford to afford 6-bromo-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-1-(2-methoxyethyl)-1H-imidazo[4,5-b]pyridine (406 mg, 71%) as a tan oil. 1H NMR (600 MHz, CDCI3) δ 8.54 (s, 1H), 7.91 (s, 1H), 7.50 (m, 1H), 7.43 (m, 1 H), 7.11 (m, 2H), 6.73 (d, 1 H), 6.60 (d, 1 H), 5.41 (s, 2H), 4.54 (m, 2H), 3.92 (s, 2H), 3.76 (m, 2H), 3.30 (s, 3H), 2.97 (d, 2H), 2.58-2.67 (m, 1H), 2.31 (m, 2H), 1.76-1.93 (m, 4H).
Step 5
To a mixture of 6-bromo-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-1-(2-methoxyethyl)-1H-imidazo[4,5-b]pyridine (610 mg, 1.04 mmol), palladium(ll) acetate (47 mg, 0.21 mmol), and dppp (128 mg, 0.31 mmol) was added DMF (4 mL), MeOH (16 mL) and trimethylamine (1.44 mL, 10.4 mmol). The reaction was heated at 80 °C with stirring under a 50 psi CO atmosphère for 20 h. The reaction mixture was cooled to RT and partitioned between water and EtOAc. The organic layer was separated and dried over MgSÛ4, filtered and concentrated under reduced pressure. The crude material was purified by flash chromatography (0 to 5% MeOH in DCM gradient) to yield methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2y l)pi perid i n-1 -yl)methyl)-1 -(2-methoxyethyl)-1 H-imidazo[4,5-b]pyridine-6-carboxylate (540 mg, 92%) as a tan gum. 1H NMR (600 MHz, CDCb) δ 9.18 (s, 1 H), 8.39 (s, 1 H), 7.49 (t, 1 H), 7.43 (t, 1H), 7.10 (t, 2H), 6.73 (d, 1 H), 6.60 (d, 1 H), 5.40 (s, 2H), 4.64 (t, 2H), 4.003.90 (m, 5H), 3.78 (t, 2H), 3.29 (s, 3H), 2.99 (d, 2H), 2.62 (m, 1H), 2.27-2.40 (m, 2H), 1.79-1.91 (m, 4H).
102
Step 6
To a solution of methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2y I) p i pe rid i n-1 -yl)methyl)-1 -(2-methoxyethyl)-1 H-imidazo[4,5-b]pyridine-6-carboxylate (2.0 g, 3.5 mmol) in MeOH (60 mL) was added 2 M NaOH (8.9 mL) and the mixture was heated at 60 °C for 1 h. The reaction was cooled to RT and acidified with 1 M HCl until pH ~4. The mixture was concentrated under reduced pressure to remove MeOH and the solid was collected by filtration and dried under vacuum to yield Example 2A-02 (1.7 g 82%) as a solid. 1H NMR (400 MHz, DMSO-d6) δ 13.35 (brs, 1H), 10.90 (brs, 1H), 9.01 (d, 1H), 8.70 (d, 1H), 7.69 (t, 1H), 7.63 (t, 1H), 7.47 (dd, 1H), 7.32 (dd, 1H), 6.93 (d, 1H), 6.73 (d, 1H), 5.40 (s, 2H), 4.86 (br s, 2H), 4.70 (br s, 2H), 3.81 (br s, 2H), 3.65 (m, 2H), 3.20 (s, 3H), 2.94 (br s, 1 H), 2.08-2.25 (m, 4H); LC-MS(ES+): 554.2 (M+H).
Example 2A-03
2-((4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -methyl-1 Himidazo[4,5-c]pyridine-6-carboxylic acid
Step 1
To a stirred solution of 2,4-dibromo-5-nitropyridine (0.21 g, 0.72 mmol) in THF (4.1 mL) was added methyl amine in THF (2 M, 1.2 mL, 2.5 mmol). After 0.5 h, the solution was diluted with water (5 mL). The aq. phase was extracted with EtOAc (3x15 mL), the combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4, filtered, and the solvent removed under reduced pressure. The crude material was purified using column chromatography (50% EtOAc/heptane) to obtain 2-bromo-Nmethyl-5-nitropyridin-4-amine as a yellow solid (0.15 g, 90%). 1H NMR (CDCh) δ 8.99 (s, 1H), 6.95 (s, 1H), 3.08 (d, 3H).
Step 2
To a stirred solution of 2-bromo-N-methyl-5-nitropyridin-4-amine (0.22 g, 0.96 mmol) in AcOH (4.8 mL) was added Fe (0.053 g, 0.96 mmol). The solution was heated to 75 °C. After 5 h, the solution was filtered through a Celite® plug, washed with EtOAc (10
103 mL) and then quenched with satd. Na2CO3. The aq. phase was extracted with EtOAc (2 x 10 mL), the combined organic layers were dried over anhydrous Na2SO4, filtered, treated with HCl in dixoane (4 M, 2.4 mL, 9.6 mmol) and the solvent removed under reduced pressure. The crude material was stirred in Et2O/PE for 30 min, and the résultant solid was then collected by filtration, washed with PE and dried under reduced pressure to provide of 6-bromo-A/4-methylpyridine-3,4-diamine hydrochloride (0.20 g, 88%). 1H NMR (CD3OD) δ 7.48 (s, 1H), 6.95 (s, 1H), 3.04 (s, 3H).
Step 3
To a stirred solution of 6-bromo-A/4-methylpyridine-3,4-diamine hydrochloride (0.15 g, 0.52 mmol) in DMF (2.4 mL) was added Intermediate 5 (0.18 g, 0.48 mmol) followed by DIPEA (0.25 mL, 1.4 mmol) and HBTU (0.18 g, 0.57 mmol). After 2 h, the solution was concentrated under reduced pressure, diluted with EtOAc (20 mL) and washed with satd. Na2CO3. The organic layer was dried over anhydrous Na2SO4, filtered and the solvent removed under reduced pressure. The crude amide N-(6-bromo-4(methylamino)pyridin-3-yl)-2-(4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1yl)acetamide was dissolved in 1,4-dioxane (5 mL), treated with NaOH (2 M, 2.4 mL, 4.8 mmol) and heated to 100 °C. After 0.5 h, the solution was diluted with water (10 mL). The aq. phase was extracted with CH2CI2 (3x10 mL), the combined organic layers were dried over anhydrous Na2SO4, filtered, and the solvent removed under reduced pressure. The crude material was purified using column chromatography eluting with EtOAc to obtain 6bromo-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-1methyl-1 H-imidazo[4,5-c]pyridine as a brown oil (0.19 g, 72%). 1H NMR (CDCI3) δ 8.74 (s, 1H), 7.44-7.51 (m, 2H), 7.41 (t, 1H), 7.08 (t, 2H), 6.71 (d, 1H), 6.59 (d, 1H), 5.39 (s, 2H), 3.89 (s, 3H), 3.83 (s, 2H), 2.94 (d, 2H), 2.60 (ddd, 1H), 2.28 (t, 2H), 1.85-1.90 (m, 2H), 1.75-1.84 (m, 2H).
Step 4
To a vial containing 6-bromo-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-1-methyl-1 H-imidazo[4,5-c]pyridine (0.060 g, 0.11 mmol), DPPP (0.011 g, 0.028 mmol) and Pd(OAc)2 (0.035 g, 0.015 mmol) was added DMF (0.4 mL) followed by MeOH (2.6 mL) and EtsN (0.13 mL, 1.1 mmol). The solution was heated to 80 °C under CO (50 psi) atmosphère. After 16 h, the solution was diluted with brine (5 mL). The aq. phase was extracted with EtOAc (2x10 mL), the combined organic layers
104 were dried over anhydrous MgSCU, filtered, and the solvent removed under reduced pressure. The crude material was purified using column chromatography eluting with 5% MeOH in CH2CI2 to obtain methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-1-methyl-1H-imidazo[4,5-c]pyridine-6-carboxylate as a yellow oil (0.060 g, quant). 1H NMR (600 MHz, CDCI3) δ 9.11 (s, 1 H), 8.29 (s, 1 H), 7.45-7.54 (m, 1H), 7.35-7.45 (m, 1H), 7.10 (t, 2H), 6.73 (d, 1H), 6.61 (d, 1H), 5.40 (s, 2H), 4.05 (s, 3H), 4.02 (s, 3H), 3.91 (s, 2H), 2.98 (d, 2H), 2.58-2.68 (m, 1H), 2.32 (t, 2H), 1.74-1.95 (m, 4H).
Step 5
To a stirred solution of methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2y I )piperidi n-1 -yl)methyl)-1 -methyl-1 H-imidazo[4,5-c]pyridine-6-carboxylate (0.041 g, 0.078 mmol) in MeOH (0.78 mL) was added a solution of NaOH in water (2 M, 0.14 mL) under stirring at 35 °C. After 2 h, the solution was acidified to pH ~4 with HCl in water (1 M), cooled to 0 °C, diluted with water (0.5 mL), and allowed to stand for 2 h. The résultant solid precipitate was slurried for 1 h, collected by filtration , washed with water (2x1 mL), and then dried under reduced pressure to provide Example 2A-03 as a solid (21 mg, 48%). 1H NMR (400 MHz, CD3OD) δ: 9.10 (brs, 1H), 8.57 (brs, 1H), 7.67 (br. t, 1H), 7.52 (br. t, 1H), 7.13-7.33 (m, 2H), 6.95 (d, 1H), 6.75 (d, 1H), 5.46 (s, 2H), 4.92 (s, 2H), 3.924.18 (m, 5H), 3.45 (br s, 2H), 3.08 (br s, 1H), 2.11-2.46 (m, 4H). LC-MS(ES+): 510.3 (M+H).
The compounds listed in Table 2 below were prepared using procedures analogous to those described above for the synthesis of Examples 2A-01,2A-02, and 2A03 using the appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using methods well known to those skilled in the art and may include silica gel chromatography, HPLC, or crystallization from the reaction mixture. The final compounds may hâve been isolated as neutrals or acid or base salts.
105
Table 2
Ex. # Name NMR data/LC-MS data
2A-04 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 methyl-1 H-imidazo[4,5b]pyridine-6-carboxylic acid 1H NMR (600 MHz, CD3OD) δ 9.04 (s, 1H), 8.52 (s, 1H), 7.70 (t, 1H), 7.46 (t, 1H), 7.27- 7.04 (m, 2H), 6.82 (d, 1H), 6.62 (d, 1H), 5.38 (s, 2H), 4.11 (s, 2H), 4.02 (s, 3H), 3.21 (d, 2H), 2.77-2.45 (m, 3H), 2.07-1.78 (m, 4H). LC- MS(ES+): 510.3 (M+H).
2A-05 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 [(2S)-oxetan-2-ylmethyl]-1 Himidazo[4,5-c]pyridine-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.92 (s, 1H), 8.50 (s, 1H), 7.60 (dd, 1H), 7.49 (m, 1H), 7.18 (m, 2H), 6.86 (d, 1H), 6.66 (d, 1H), 5.43 (s, 2H), 5.27 (d, 1H), 4.81 (m, 1H), 4.65 (m, 1H), 4.50 (m, 1H), 4.24 (d, 1H), 4.12 (d, 1H), 3.20 (m, 1H), 2.97-2.69 (m, 2H), 2.55 (m, 3H), 2.00 (m, 5H). LC-MS(ES+): 566.1 (M+H).
2A-06 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -yl)methyl]-1 (1,3-oxazol-2-ylmethyl)-1 Himidazo[4,5-c]pyridine-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.14 (s, 1H), 8.63 (s, 1 H), 8.00 (s, 1 H), 7.68 (m, 1 H), 7.53 (m, 1H), 7.24 (m, 3H), 6.95 (d, 1H), 6.76 (d, 1H), 5.96 (s, 2H), 5.47 (s, 2H), 4.98 (s, 2H), 3.97 (brs, 2H), 3.43 (m, 2H), 3.08 (m, 1H), 2.28 (m, 4H). LC-MS(ES+): 577.0 (M+H).
2A-07 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -y l)methyl]-1 -(2methoxyethyl)-1 Himidazo[4,5-c]pyridine-6carboxylic acid 1H NMR (400 MHz, DMSO-d6) δ 9.12 (d, 1H), 8.55 (d, 1H), 7.71 (t, 1H), 7.61 (t, 1H), 7.49 (dd, 1H), 7.33 (dd, 1H), 6.95 (d, 1H), 6.76 (d, 1H), 5.41 (s, 2H), 4.88 (s, 2H), 4.68 (d, 2H), 3.84 (s, 1H), 3.66 (t, 2H), 3.33 (s, 2H), 3.21 (s, 3H), 2.96 (s, 1H), 2.11 (s, 5H). LC-MS(ES+): 553.9 (M+H).
106
Ex. # Name NMR data/LC-MS data
2A-08 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperid i n-1 -yl)methyl]-7fluoro-1 -(2-methoxyethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 7.86 (dd, 1H), 7.66 (dd, 1H), 7.58 (d, 1H), 7.51 (t, 1H), 7.19- 7.28 (m, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.45 (s, 2H), 4.80 (s, 2H), 4.67 (t, 2H), 3.91 (d, 2H), 3.80 (t, 3H), 3.34-3.47 (m, 2H), 3.32 (s, 3H), 3.06 (m, 1H), 2.16-2.35 (m, 4H). LC-MS(ES+): 571.2 (M+H).
2A-09 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p iperid i n-1 -yl)methyl]-5fluoro-1-methyl-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CDCI3) δ 7.88 (d, 1H), 7.59-7.50 (m, 1H), 7.45-7.33 (m, 2H), 7.147.04 (m, 2H), 6.77 (d, 1H), 6.67 (d, 1H), 5.36 (s, 2H), 4.76 (s, 2H), 4.04 (m, 5H), 3.37 (m, 2H), 2.98 (m, 1H), 2.31 (m, 4H). LC-MS(ES+): 527.1 (M+H).
2A-10 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -y I) methyl]-1 -(2methoxyethyl)-1 Himidazo[4,5-b]pyrazine-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 9.28 (s, 1H), 7.61-7.71 (m, 1H), 7.45-7.57 (m, 1H), 7.23 (m, 2H), 6.85-7.03 (m, 1H), 6.61-6.81 (m, 1H), 5.46 (s, 2H), 5.00 (s, 2H), 4.65-4.74 (m, 2H), 3.91-4.10 (m, 2H), 3.70-3.86 (m, 2H), 3.42- 3.59 (m, 2H), 3.33 (s, 3H), 3.03-3.18 (m, 1H), 2.31 (d, 2H), 2.18-2.26 (m, 2H). LC-MS(ES+): 554.0 (M+H).
2A-11 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n-1 -yl)methyl]-1 -(2methoxyethyl)-7-methyl-1 Himidazo[4,5-b]pyridine-6carboxylic acid 1H NMR (400 MHz, CDCI3) δ: 8.79 (s, 1H), 7.70 (br s, 1 H), 7.61 (t, 1 H), 7.48 (d, 1 H), 7.32 (d, 1 H), 6.95 (br s, 1 H), 6.74 (d, 1 H), 5.41 (s, 2H), 4.73 (br s, 3H), 3.73 (br s, 4H), 3.22 (b s, 5H), 2.91 (b s, 4H), 2.09 (br s, 4H). LCMS(ES+): 568.3 (M+H).
107
Ex. # Name NMR data/LC-MS data
2 A-12 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methy l]-1,5dimethyl-1 H-imidazo[4,5b]pyridine-6-carboxylic acid 1H NMR (600 MHz, DMSO-d6) δ 13.15 (s, 1H), 10.79 (s, 1H), 8.57 (s, 1H), 7.70 (t, 1H), 7.63 (t, 1H), 7.48 (dd, 1H), 7.33 (dd, 1H), 6.93 (s, 1H), 6.74 (d, 1H), 5.40 (s, 2H), 4.82 (s, 2H), 3.95 (s, 3H), 3.82 (m, 2H), 3.01-2.86 (m, 1H), 2.81 (s, 3H), 2.53-2.48 (m, 3H), 2.28-1.95 (m, 3H). LCMS(ES+): 524.2 (M+H).
2 A-13 5-chloro-2-[(4-{6-[(4-chloro2-fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -y I ) m ethy I]-1 methyl-1 H-benzimidazole-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ: 8.07 (br s, 1H), 7.77 (br s, 1 H), 7.63 (br s, 1 H), 7.50 (br s, 1 H), 7.14-7.31 (m, 2H), 6.90 (d, 1H), 6.71 (d, 1H), 5.43 (br s, 2H), 4.57 (br s, 2H), 3.94 (br s, 3H), 3.70 (d, 2H), 3.14 (br s, 2H), 2.95 (br s, 1 H), 1.99-2.31 (m, 4H). LC-MS(ES+): 546.2 (M+H).
2A-14 2-[(4-{6-[(4- cyanobenzyl)oxy]pyridin-2y IJpiperid in-1 -yl)methyl]-5fluoro-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.25 (d, 1H), 7.79-7.59 (m, 5H), 7.54 (d, 1H), 6.95 (d, 1H), 6.80 (d, 1H), 5.53 (s, 2H), 4.81 (s, 2H), 4.60 (m, 2H), 3.93 (m, 1H), 3.78-3.70 (m, 2H), 3.41 (m, 3H), 3.06 (sm 1H), 2.21 (m, 4H). LCMS(ES+): 544.3 (M+H).
2A-15 2-[(4-{6-[(4cyanobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -yl)methyl]-7fluoro-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 7.89 (dd, 1H), 7.80-7.56 (m, 6H), 6.95 (d, 1H), 6.80 (d, 1H), 5.53 (s, 2H), 4.81 (s, 2H), 4.67 (m, 2H), 3.92 (s, 2H), 3.81 (m, 2H), 3.41 (s, 2H), 3.07 (s, 1H), 2.21 (s, 4H). LC-MS(ES+): 544.3 (M+H).
108
Ex. # Name NMR data/LC-MS data
2A-16 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -yl)methyl]-1 (2,2,2-trifluoroethyl)-1 Himidazo[4,5-b]pyridine-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 9.18 (s, 1H), 8.80 (s, 1H), 7.67 (t, 1H), 7.51 (t, 1H), 7.23 (t, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.47 (s, 2H), 5.45-5.39 (m, 2H), 4.94 (s, 2H), 4.03 (s, 2H), 3.44 (s, 2H), 3.09 (s, 1H), 2.44-2.12 (m, 4H). LC-MS(ES+): 578.4 (M+H).
2A-17 2-[(4-{6-[(4-chloro-2- fluorobenzyl)oxy]pyridin-2y IJpiperid i n-1 -yl)methyl]-3-(2methoxyethyl)-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.25-8.00 (m, 2H), 7.59 (t, 1H), 7.49 (t, 1H), 7.35-7.09 (m, 2H), 6.84 (d, 1H), 6.65 (d, 1H), 5.41 (s, 2H), 4.81 (t, 2H), 4.21 (s, 2H), 3.84 (t, 2H), 3.32 (s, 3H), 3.25 (d, 2H), 2.84-2.70 (m, 1H), 2.61 (t, 2H), 2.09-1.85 (m, 4H). LC-MS(ES+): 554.2 (M+H).
2A-18 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperid i n-1 -yl)methyl]-3(1,3-oxazol-2-ylmethyl)-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.31 (d, 1H), 8.24 (d, 1H), 7.99 (s, 1H), 7.72-7.63 (m, 1H), 7.53 (m, 1H), 7.31-7.19 (m, 2H), 7.16 (s, 1H), 6.95 (d, 1H), 6.75 (d, 1H), 5.99 (s, 2H), 5.47 (s, 2H), 3.96 (m, 2H), 3.52-3.34 (m, 2H), 3.08 (m, 1H), 2.25 (m, 5H). LC-MS(ES+): 577.0 (M+H).
2 A-19 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y Qpiperid in-1 -yl)methyl]-3(1 ^-oxazol^-ylmethylj-SHimidazo^.S-blpyridine-Scarboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.31 (d, 1H), 8.24 (d, 1H), 7.99 (s, 1H), 7.71 (m, 2H), 7.64- 7.56 (m, 2H), 7.17 (s, 1H), 6.97 (d, 1H), 6.81 (d, 1H), 5.98 (s, 2H), 5.58 (s, 2H), 3.99 (d, 2H), 3.45 (m, 2H), 3.08 (m, 1H), 2.34-2.17 (m, 4H). LC-MS(ES+): 568.1 (M+H).
109
Ex. # Name NMR data/LC-MS data
2A-20 2-[(4-{6-[(2,4- difluorobenzyl)oxy]pyridin-2yl}piperidin-1 -y l)methyl]-3- [(2S)-oxetan-2-ylmethyl]-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.09 (q, 2H), 7.67-7.51 (m, 2H), 7.04-6.89 (m, 2H), 6.85 (d, 1H), 6.64 (d, 1H), 5.42 (s, 2H), 5.32 (m, 1H), 5.06 (dd, 1H), 4.64 (m, 1H), 4.47 (m, 1H), 4.23 (d, 1H), 4.12 (d, 1H), 3.28-3.09 (m, 2H), 2.872.66 (m, 2H), 2.62-2.42 (m, 3H), 2.06-1.85 (m, 4H). LC-MS(ES+): 550.1 (M+H).
2A-21 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-3-(1,3-oxazol-2ylmethyl)-3H-imidazo[4,5b]pyridine-5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.33-8.19 (m, 2H), 7.98 (d, 1H), 7.77-7.48 (m, 4H), 7.17 (d, 1H), 6.45 (d, 1H), 6.30 (d, 1H), 5.98 (d, 2H), 5.48 (s, 2H), 5.09 (d, 1H), 4.73 (d, 1H), 4.06 (m, 2H), 3.74 (m, 2H), 3.61-3.46 (m, 2H), 3.38 (m,1H), 1.50 (d, 3H). LC-MS(ES+): 583.1 (M+H)
2A-22 2-[(4-{6-[(4-chloro-2- fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -yl)methyl]-3[(2R)-oxetan-2-ylmethyl]-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.14 (m, 2H), 7.66-7.57 (m, 1H), 7.51 (m, 1H), 7.22 (m, 2H), 6.87 (d, 1 H), 6.68 (d, 1 H), 5.44 (s, 2H), 5.32 (m, 1H), 5.02 (m, 1H), 4.71-4.59 (m, 1H), 4.52- 4.42 (m, 1H), 4.38-4.21 (m, 2H), 3.28 (m, 1H), 2.87-2.74 (m, 2H), 2.66 (m, 1H), 2.62-2.50 (m, 1H), 2.00 (m, 4H). LC-MS(ES+): 566.1 (M+H)
2A-23 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y Ijpiperid i n-1 -yl)methyl]-3[(2S)-oxetan-2-ylmethyl]-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.14 (d, 2H), 7.61 (t, 1H), 7.51 (t, 1H), 7.22 (m, 2H), 6.87 (d, 1H), 6.68 (d, 1H), 5.43 (s, 2H), 5.31 (m, 1H), 5.01 (m, 1H), 4.87 (d, 1H), 4.71-4.60 (m, 1H), 4.46 (m, 1H), 4.34 (m, 2H), 3.39 (m, 1H), 3.30 (m, 1H), 2.91-2.65 (m, 4H), 2.55 (m, 1H), 2.01 (m, 4H). LC-MS(ES+): 566.1 (M+H)
Example 3A-01 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid
Step 1
To a stirred solution of Intermediate 22 (49.8 g, 211 mmol) in MeCN (300 mL) was added 2-chloro-1,1,1-trimethoxyethane (30.0 mL, 223 mmol) followed by pTSA’LLO (2.0 g, 10 mmol). After 1 h at 60 °C, MeCN (400 mL), K2CO3 (116 g, 841 mmol) and Intermediate 3 (52.4 g, 90.2 mmol) were added. After 2 h, the solution was treated with water (1.6 L), allowed to cool to RT and stirred for 2 h. The resulting solid precipitate was collected by filtration, washed with water (2 x 300 mL) and dried under reduced pressure to provide methyl (S)-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1yl)methyl)-1-(oxetan-2-ylmethyl)-1H-benzo[d]imidazole-6-carboxylate as a solid (102 g, 84%). 1H NMR (DMSO-d6) δ 8.30 (s, 1H), 7.82 (d, 1H), 7.67 (d, 1H), 7.62 (t, 1H), 7.55 (t, 1H), 7.45 (d, 1H), 7.29 (d, 1H), 6.87 (d, 1H), 6.67 (d, 1H), 5.37 (s, 2H), 5.04-5.16 (m, 1H), 4.82 (dd, 1H), 4.62-4.73 (m, 1H), 4.44-4.52 (m, 1H), 4.37 (dt, 1H), 3.96 (d, 1H), 3.87 (s, 3H), 3.78 (d, 1H), 3.00 (d, 1H), 2.85 (d, 1H), 2.66-2.76 (m, 1H), 2.54-2.64 (m, 1H), 2.382.49 (m, 1H), 2.24 (t, 2.11-2.21 (m, 1H), 1.60-1.88 (m, 4H).
Step 2
To a stirred solution of methyl (S)-2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yI)piperidin-1 -yl)methyl)-1 -(oxetan-2-ylmethyl)-1 H-benzo[d]imidazole-6-carboxylate (7.2 g, 12 mmol) in MeOH (50 mL) and THF (50 mL) was added 2 M NaOH (25 mL, 50 mmol). After 2 h at 45 °C, the solution was allowed to cool to RT, diluted with water (100 mL) and acidified to pH ~6 with citric acid in water (1 M, 20 mL). The résultant solid precipitate was slurried for 1 h, collected by filtration, washed with water (100 mL) and then dried under reduced pressure to obtain Example 3A-01 as a solid (6.4 g, 91%). 1H NMR (DMSO-d6) δ 12.84 (br s, 1H), 8.27 (s, 1H), 7.80 (d, 1H), 7.59-7.67 (m, 2H), 7.55 (t, 1H), 7.45 (dd, 1H), 7.29 (dd, 1H), 6.86 (d, 1H), 6.67 (d, 1H), 5.37 (s, 2H), 5.06-5.17 (m, 1H), 4.80 (dd, lll
1H), 4.66 (dd, 1H), 4.44-4.53 (m, 1H), 4.38 (dt, 1H), 3.95 (d, 1H), 3.78 (d, 1H), 3.00 (d,
H), 2.85 (d, 1 H), 2.64-2.77 (m, 1 H), 2.54-2.64 (m, 1 H), 2.40-2.48 (m, 1 H), 2.20-2.29 (m,
1H), 2.17 (t, 1H), 1.61-1.85 (m, 4H). LC-MS(ES+): 565.4 (M+H).
Example 4A-01 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan2-ylmethyI]-1 H-benzimidazole-6-carboxylic acid
Step 1
To a stirred solution of Intermediate 22 (33.6 g, 142 mmol) in MeCN (285 mL) was added 2-chloro-1,1,1 -trimethoxyethane (20.1 mL, 149 mmol) followed by pTSA’HsO (1.35 g, 7.1 mmol). After 2 h at 50 °C, MeCN (280 mL), K2CO3 (79 g, 570 mmol) and Intermediate 4 (93.2 g, 142 mmol) were added. After 2 h, the solution was treated with water (800 mL), allowed to cool to RT and stirred for 2 h. The resulting precipitate was collected by filtration, washed with 10% MeCN in water (150 mL), water (2 x 200 mL) and then dried under reduced pressure to provide methyl (S)-2-((4-(6-((4-cyano-2fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -(oxetan-2-ylmethyl)-1 Hbenzo[d]imidazole-6-carboxylate as a colorless solid (77 g, 95%). 1H NMR (600 MHz, DMSO-d6) δ 8.28 (s, 1 H), 7.87 (d, 1 H), 7.80 (d, 1 H), 7.55-7.73 (m, 4H), 6.87 (d, 1 H), 6.70 (d, 1H), 5.45 (s, 2H), 5.04-5.19 (m, 1H), 4.81 (dd, 1H), 4.66 (dd, 1H), 4.41-4.54 (m, 1H), 4.36 (dt, 1H), 3.94 (d, 1H), 3.86 (s, 3H), 3.76 (d, 1H), 2.97 (d, 1H), 2.82 (d, 1H), 2.63-2.77 (m, 1H), 2.49-2.63 (m, 1 H), 2.37-2.46 (m, 1 H), 2.18-2.29 (m, 1 H), 2.05-2.18 (m, 1H), 1.471.82 (m, 4H).
Step 2
To a stirred solution of methyl (S)-2-((4-(6-((4-cyano-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1 -yl)methyl)-1 -(oxetan-2-ylmethyl)-1 H-benzo[d]imidazole-6-carboxylate (4 g, 7 mmol) in MeCN (70 mL) was added a solution of 1,5,7-triazabicyclo[4.4.0]dec-5-ene in water (0.97 M, 14.7 mL). After 20 h, the solution was acidified to pH ~6 with citric acid in water (2 M, 7 mL) and diluted with water (50 mL). The aq. phase was extracted with
H2
EtOAc (2 x 75 mL), the combined organic layers were dried over anhydrous Na2SO4, filtered, and the solvent removed under reduced pressure to give an off-white solid. The crude material was purified using column chromatography eluting with MeOH/DCM (0:100 to 8:92) to obtain Example 4A-01 as a solid (3.65 g, 90%). 1H NMR (400 MHz, DMSO-d6) δ 12.75 (brs, 1H), 8.27 (s, 1H), 7.89 (d, 1H), 7.80 (d, 1H), 7.68-7.72 (m, 2H), 7.60-7.67 (m, 2H), 6.89 (d, 1H), 6.72 (d, 1H), 5.47 (s, 2H), 5.11 (d, 1H), 4.74-4.86 (m, 1H), 4.62-4.72 (m, 1H), 4.43-4.53 (m, 1H), 4.35-4.42 (m, 1H), 3.95 (d, 1H), 3.77 (d, 1H), 2.98 (d, 1H), 2.84 (d, 1H), 2.65-2.77 (m, 1H), 2.53-2.64 (m, 1H), 2.37-2.45 (m, 1H), 2.102.28 (m, 2H), 1.57-1.84 (m, 4H). LC-MS(ES+): 556.6 (M+H).
Tris sait of Example 4A-01
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan
2-ylmethyl]-1H-benzimidazole-6-carboxylic acid tris sait
To a stirred solution of Example 4A-01 (6.5 g, 11.7 mmol) in 1-propanol (275 mL) at 70 °C was added an aq. solution offris (2.0 M, 6.1 mL, 12.2 mmol), dropwise, during which the solution remained homogeneous. After stirring for 5 min, seed crystals were added and the mixture was allowed to cool to RT over 2 h. After stirring overnight at RT, a solid had formed. The solid was collected by filtration, washed with 1-propanol (2 x 30 mL) and dried, first under a nitrogen stream and then in a vacuum oven at 45 °C for 15 h, to give the tris sait of Example 4A-01 (6.95 g, 88%) as a crystalline solid. 1H NMR (600 MHz, DMSO-d6) δ: 8.20 (s, 1 H), 7.89 (d, 1 H), 7.79 (d, 1 H), 7.70 (br s, 2H), 7.64 (t, 1 H), 7.56 (d, 1H), 6.89 (d, 1H), 6.72 (d, 1H), 5.47 (s, 2H), 5.11 (qd, 1H), 4.77 (dd, 1H), 4.64 (dd, 1 H), 4.44-4.53 (m, 1 H), 4.38 (dt, 1 H), 3.93 (d, 1 H), 3.76 (d, 1 H), 3.35 (br s, 9H), 2.98 (d, 1H), 2.85 (d, 1H), 2.64-2.75 (m, 1H), 2.54-2.64 (m, 1H), 2.40-2.49 (m, 1H), 2.08-2.26 (m, 2H), 1.56-1.83 (m, 4H). mp = 194 °C.
OH
Example 5A-01
2-[(4-{6-[(4-Cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(2S)-oxetan2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid
H3
Step 1
A solution of Intermediate 13 (5 g, 14.4 mmol) in 5% MeOH:CH2Ch (60 mL) was treated with sat. aq. Na2COs (60 mL). The biphasic solution was stirred vigorously for 30 min and the organic layer was separated. The organic layer was dried, filtered and concentrated under reduced pressure to deliver 4-(((6-(4-piperazin-1-yl)pyridin-2yl)oxy)methyl)-3-fluorobenzonitrile (4.4 g, quant.) as a semisolid.
Step 2
To a flask containing solution of 4-(((6-(4-piperazin-1-yl)pyridin-2-yl)oxy)methyl)-3fluorobenzonitrile (1.58 grams, 5.06 mmol) in MeCN (15 mL) was added Intermediate 23 (1.40 g, 5.06 mmol) and K2COs (3.50 g, 25.3 mmol). The resulting suspension was stirred for 2 h at 50 °C. After 2 h, the mixture was treated with water (30 mL), allowed to cool to RT and stirred for 2 h. The solid was collected by filtration, washed with water: MeCN (2:1) (2 x 30 mL) and dried under reduced pressure to provide methyl (S)-2-((4-(6-((4cyano-2-fluorobenzyl)oxy)pyridin-2-yl)piperazin-1 -yl)methyl)-1 -(oxetan-2-ylmethyl)-1 Hbenzo[d]imidazole-6-carboxylate (2.47 g, 86%) as a solid. 1H NMR (600 MHz, CDCh) δ 8.16 (s, 1H), 7.98 (d, 1H), 7.76 (d, 1H), 7.59 (t, 1H), 7.42 (dt, 2H), 7.34 (d, 1H), 6.17 (dd, 2H), 5.42 (s, 2H), 5.23 (dd, 1H), 4.77-4.58 (m, 3H), 4.38 (dt, 1H), 4.05-3.95 (m, 2H), 3.95 (s, 3H), 3.46 (d, 4H), 2.80-2.69 (m, 1H), 2.62 (t, 4H), 2.50-2.38 (m, 1H).
Step 3
To a flask containing solution of methyl (S)-2-((4-(6-((4-cyano-2fluorobenzyl)oxy)pyridin-2-yl)piperazin-1-yl)methyl)-1-(oxetan-2-ylmethyl)-1Hbenzo[d]imidazole-6-carboxylate (2.5 g, 4.3 mmol) in 1:1 mixture of iPrOH and THF (140 mL) was added 1.4 equiv of LiOH (0.14 g, 6.1 mmol) and the resulting solution was heated at 45 °C for 15 h. The solution was allowed to cool to RT, diluted with water (50 mL) and acidified to pH ~6 with citric acid in water. The resulting solution was extracted with EtOAc. The EtOAc layer was dried and the solvent removed under reduced pressure to obtain the crude product. The crude product was purified by flash chromatography (10% MeOH in CH2CI2) to obtain Example 5A-01 (0.86 g, 35%) as a solid. 1H NMR (600 MHz, CDCh) δ 8.23 (s, 1H), 8.06 (d, 1H), 7.83 (d, 1H), 7.59 (t, 1H), 7.46-7.39 (m, 2H), 7.34 (d, 1H), 6.18 (dd, 2H), 5.43 (s, 2H), 5.28-5.20 (m, 1H), 4.81-4.58 (m, 3H), 4.44-4.33 (m, 1H), 4.04 (d, 2H), 3.48 (m, 4H), 2.82-2.71 (m, 1H), 2.65 (m, 4H), 2.46 (dd, 1H). LC-MS(ES+): 557.2 (M+H).
ll4
Example 6A-01 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)-oxetan2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid
Step 1
To a 3-neck 3-L flask equipped with a mechanic stirrer, charged with Intermediate 4 (106 g, 161 mmol) was added MeCN (886 mL), K2CO3 (89.0 g, 644 mmol) and Intermediate 27 (52.4 g, 177 mmol). The mixture was stirred at 60 °C for 2 h. The reaction mixture was poured into a 4 L Erlenmeyer flask and diluted with 1.8 L water. The resulting suspension was stirred at RT for 4 h to give a light yellow suspension. The solids were collected by filtration and dried in a vacuum oven at 45 °C overnight to yield the desired methyl (S)-2-((4-(6-((4-cyano-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3(oxetan-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylate (88.6 g, 96%) as a light yellow solid. 1H NMR (600 MHz, DMSO-d6) δ 8.16 (d, 1H), 8.01 (d, 1H), 7.87 (d, 1H), 7.61-7.74 (m, 3H), 6.88 (d, 1H), 6.71 (d, 1H), 5.46 (s, 2H), 5.11-5.26 (m, 1H), 4.85 (dd, 1 H), 4.73 (dd, 1 H), 4.43-4.60 (m, 1 H), 4.37 (dt, 1 H), 3.96-4.04 (m, 1 H), 3.89-3.95 (m, 3H), 2.87-3.01 (m, 2H), 2.66-2.81 (m, 1H), 2.55-2.64 (m, 1H), 2.52 (br s, 3H), 2.24 (q, 2H), 1.64-1.81 (m, 3H); LC-MS(ES+): 571.5 (M+H).
Step 2
To a 1L 3 neck flask equipped with a mechanic overhead stirrer was charged methyl (S)-2-((4-(6-((4-cyano-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-3(oxetan-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylate (35.5 g, 62.21 mmol). MeCN (350 mL) and water (70 mL) were added to the flask. The resulting mixture was stirred at RT for 30 min to form a thick suspension. LiOH’H2O (2.92 g, 68.4 mmol) was slowly added as a solid. The resulting suspension was stirred at 40 °C for 1 h. The reaction mixture was cooled to RT and treated, dropwise, with 1.0 M citric acid (15.5 mL) until the pH of the suspension reached ~5. The resulting suspension was stirred at RT for 4 h. The résultant solids were collected by filtration, the solids were rinsed with ~20 ml
115 water and then dried under a stream of N2 for 4 h. The solids were dried for an additional h at 40 °C in a vacuum oven to dry to yield Example 6A-01 (31.2 g, 90%.) as a solid.
1H NMR (600 MHz, DMSO-d6) δ 13.03 (br s, 1H), 8.15 (d, 1H), 8.00 (d, 1H), 7.87 (d, 1H),
7.67-7.73 (m, 2H), 7.64 (t, 1H), 6.88 (d, 1H), 6.71 (d, 1H), 5.45 (s, 2H), 4.93-5.03 (m, 1H),
4.87 (s, 1H), 4.70 (d, 1H), 4.36-4.45 (m, 1H), 4.23-4.35 (m, 1H), 4.05 (d, 1H), 3.79 (d,
1H), 2.93-3.06 (m, 1H), 2.76-2.88 (m, 1H), 2.54-2.69 (m, 1H), 2.34-2.46 (m, 1H), 2.25 (d,
2H), 2.05-2.21 (m, 1H), 1.73 (d, 3H), 1.47-1.67 (m, 1H); LC-MS(ES+): 557.6 (M+H).
Example 7A-01
2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3-oxazol-2ylmethyl)-1 H-benzimidazole-6-carboxylic acid
Step 1
To a suspension ofthe oxazol-2-ylmethanamine HCl sait (491 mg, 3.65 mmol) and Intermediate 29 (800 mg, 3.32 mmol) in DMF (5 mL) was added K2CO3 (1.04 g, 6.63 mmol). The reaction was stirred at 60 °C for 2 h. Additional oxazol-2-ylmethanamine HCl sait (100 mg, 1.0 mmol) was added and reaction stirred for an additional 30 min at 60 °C. The reaction was cooled to RT then diluted with water (30 mL) and extracted with EtOAc (60 mL). The organic layer was washed with water, then brine, dried over Na2SO4, filtered and concentrated under reduced pressure. The orange residue was purified by flash chromatography (12 g silica gel, 0-50% EtOAc/heptane gradient) to deliver tert-butyl 4nitro-3-((oxazol-2-ylmethyl)amino)benzoate (764 mg, 75%) as an orange solid. 1H NMR (CDCh) δ 8.48 (brs, 1H), 8.23 (d, 1H), 7.68 (d, 1H), 7.61 (d, 1H), 7.28 (dd, 1H), 7.15 (s, 1H), 4.72 (d, 2H), 1.60 (s, 9H).
Step 2
To a solution of tert-butyl 4-nitro-3-((oxazol-2-ylmethyl)amino)benzoate (15 g, 47 mmol) in THF (100 mL) was added 10% palladium on carbon (1.5 g, 10% w/w), and the mixture was then stirred under 50 psi H2 at RT for 6 h. The reaction mixture was then filtered through Celite® to give a dark solution. The filtrate was filtered through second
116
Celite® pad and the filtrate concentrated under reduced pressure to deliver tert-butyl 4amino-3-((oxazol-2-ylmethyl)amino)benzoate (13.1 g, 92%) as a dark foam. 1H NMR (CDCh) δ 7.62 (s, 1 H), 7.43 (dd, 1 H), 7.35 (d, 1 H), 7.08 (s, 1 H), 6.66 (d, 1 H), 4.44 (s, 2H),
1.56 (s, 9H).
Step 3
To a stirred solution of tert-butyl 4-amino-3-((oxazol-2-ylmethyl)amino)benzoate (13 g, 45 mmol) in MeCN (100 mL) was added 2-chloro-1,1,1-trimethoxy ethane (9.0 ml, 65 mmol) and pTSA’hhO (400 mg, 2.1 mmol) and the mixture was heated at 60 °C for 3 h. The reaction was then cooled to RT and concentrated under reduced pressure. The crude product was purified by flash chromatography (120 g silica gel, 0-100% EtOAc/heptane gradient) to yield tert-butyl 2-(chloromethyl)-1-(oxazol-2-ylmethyl)-1 Hbenzo[d]imidazole-6-carboxylate (11.6 g, 74%) as a light yellow solid. 1H NMR (CDCh) δ 8.19 (d, 1H), 7.98 (dd, 1H), 7.77 (d, 1H), 7.64 (d, 1H), 7.12 (d, 1H), 5.64 (s, 2H), 5.00 (s, 2H), 1.62-1.66 (m, 9H).
Step 4
To a suspension of tert-butyl 2-(chloromethyl)-1-(oxazol-2-ylmethyl)-1 Hbenzo[d]imidazole-6-carboxylate (10.1 g, 29 mmol) and Intermediate 4 (11.2 g, 29.1 mmol) in MeCN (100 mL) was added K2CO3 (16.1 g, 116 mmol). The mixture was stirred at 60 °C for 2 h and then diluted with water (200 mL) and stirred for an additional 4 h at RT. The resulting solids were collected by filtration to deliver tert-butyl 2-((4-(6-((4-cyano2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -(oxazol-2-ylmethyl)-1 Hbenzo[d]imidazole-6-carboxylate (16.23 g, 89%) as a solid. 1H NMR (DMSO-d6) δ 8.13 (s, 1 H), 8.04 (s, 1 H), 7.88 (d, 1 H), 7.78 (dd, 1 H), 7.70 (br s, 2H), 7.66 (d, 1 H), 7.62 (t, 1 H), 7.13 (s, 1H), 6.79 (d, 1H), 6.69 (d, 1H), 5.91 (s, 2H), 5.44 (s, 2H), 3.84 (s, 2H), 2.80 (d, 2H), 2.46 (d, 1H), 2.05-2.13 (m, 2H), 1.64 (d, 2H), 1.55 (s, 9H), 1.35-1.43 (m, 2H).
Step 5
To a solution of tert-butyl 2-((4-(6-((4-cyano-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)methyl)-1-(oxazol-2-ylmethyl)-1H-benzo[d]imidazole-6-carboxylate (31.1 g, 50.0 mmol) in DCE (300 mL) was added TFA (40 ml, 530 mmol). The mixture was heated to 70 °C for 4 h and then slowly cooled to RT and stirred overnight. The mixture was concentrated under reduced pressure and the residue was dissolved in MeOH (100 mL) and water (300 mL). Saturated aq. NaHCOs (85 mL) was added, dropwise, to bring
H7 the solution to pH ~7. The resulting solids were stirred to granulate for 3 h, and then collected by filtration to deliver Example 7A-01 (27.3 g, 96%) as a solid. 1H NMR (600 MHz, DMSO-d6) δ 12.93 (brs, 1H), 8.19 (s, 1H), 8.03 (s, 1H), 7.88 (d, 1H), 7.82 (d, 1H),
7.70 (br s, 2H), 7.65 (d, 1H), 7.62 (t, 1H), 7.12 (s, 1H), 6.80 (d, 1H), 6.66-6.71 (m, 1H), 5.90 (s, 2H), 5.43 (s, 2H), 3.84 (s, 2H), 2.81 (d, 2H), 2.46 (m, 1H), 2.10 (t, 2H), 1.64 (d, 2H), 1.36-1.46 (m, 2H); LC-MS(ES+): 568.3 (M+H).
XO
Example 8A-01
Ammonium 2-((4-(6-((4-Methylbenzyl)oxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -(2methoxyethyl)-1 H-benzo[d]imidazole-6-carboxylate
To a 1 dram vial was added Intermediate 35 (20 mg, 47 pmol) followed by 4methylbenzyl alcohol (100 pmol). THF (500 pL) was added followed by Tsunoda Reagent (cyanomethylene tributyl phosphorane, 0.5 M in THF, 400 pL, 0.20 mmol) and the mixture was heated at 70 °C for 3 h. The reaction was cooled to RT and concentrated under reduced pressure. The residue was dissolved in MeOH (1 mL). 1 M NaOH (0.15 ml, 150 pmol) was added and the mixture heated at 60 °C for 3 h and then held at RT for 48 h. The mixture was concentrated under reduced pressure and the crude product purified by préparative SFC to deliver Example 8A-01 (10.7 mg, 45%). SFC Method (Column: Phenomenex Biphenyl 4.6 x150 mm), 5 pm; Mobile phase A: CO2 (v/v); Mobile phase B: Methanol w/ 0.2% NH4OH (v/v) 85% CO2 / 15% Methanol w/ 0.2% NH4OH Linear in 8 min, HOLD at 70% CO2 / 30% Methanol w/ 0.2% NH4OH to 10 min. Flow: 75 mL/min. Back Pressure: 120 Bar; Rétention time 2.56 min; LC-MS(ES+): 515.4 (M+H).
The compounds listed in Table 3 below were prepared using procedures analogous to those described above for the synthesis of Examples 8A-01 using the appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using
H8 methods well known to those skilled in the art and may include silica gel chromatography,
HPLC, or crystallization from the reaction mixture. The final compounds may hâve been isolated as neutrals or acid or base salts.
Table 3
Ex. # Name MW found Ret. time (min)
8A-02 2-((4-(6-((4-cyano-3-methylbenzyl)oxy)pyridin-2y I ) pi pe rid i n -1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylic acid 540.4 2.47
8A-03 2-((4-(6-((4-chloro-2,5-difluorobenzyl)oxy)pyridin- 2-y l)piperid i n-1 -yl)methyl)-1 -(2-methoxyethyl)- 1 H-benzo[d]imidazole-6-carboxylic acid 571.4 2.70
8A-04 2-((4-(6-((4-chloro-2,6-difluorobenzyl)oxy)pyridin- 2-y l)piperid i n-1 -yl)methyl)-1 -(2-methoxyethyl)- 1 H-benzo[d]imidazole-6-carboxylic acid 571.4 2.67
Example 9A-01 2-((4-(6-(Benzyloxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -methyl-1 H-benzo[d]imidazole-6carboxylic acid
Step 1
A mixture of Intermediate 36 (100 mg, 0.251 mmol), benzyl alcohol (48.2 mg, 0.446 mmol), BINAP (23.2 mg, 0.0373 mmol), Pd2(dba)3 (15.2 mg, 0.0166 mmol) and CS2CO3 (123 mg, 0.378 mmol) in PhMe (2 mL) was stirred at 100 °C for 14 h. The brown mixture was diluted with DCM (50 mL) and filtered. The filtrate was concentrated under reduced pressure to give a brown oil which was purified by prep-TLC (DCM:MeOH = 20:1) to afford methyl 2-((4-(6-(benzyloxy)pyridin-2-yl)piperidin-1 -yl)methyl)-1 -methyl-1 Hbenzo[d]imidazole-6-carboxylate (99.7 mg, 84%) as a yellow solid. 1H NMR (CD3OD) δ
H9
8.32 (s, 1H), 8.02 (dd, 1H), 7.79 (d, 1H), 7.59-7.70 (m, 1H), 7.40-7.48 (m, 2H), 7.35 (m,
2H), 7.23-7.32 (m, 1H), 6.90 (d, 1H), 6.73 (d, 1H), 5.40 (s, 2H), 4.79 (s, 2H), 3.96 (s, 6H),
3.91 (d, 2H), 3.40 (m, 2H), 3.05 (br s, 1 H), 2.14-2.38 (m, 4H).
Step 2
To a solution of methyl 2-((4-(6-(benzyloxy)pyridin-2-yl)piperidin-1-yl)methyl)-1methyl-1 H-benzo[d]imidazole-6-carboxylate (90.0 mg, 0.191 mmol) in MeOH (3 mL) was added 3.0 M NaOH (2.0 mL, 6.0 mmol). The mixture was stirred at 40 °C for 4 h. The reaction mixture was neutralized with 1 M HCl and the résultant slurry extracted with (DCM:MeOH 10:1, 2 x 40 mL). The combined organic extracts were dried over MgSO4, filtered and concentrated under reduced pressure to give a yellow solid. The yellow solid was purified by préparative HPLC (Column: Waters Xbridge Prep OBD C18 100 x 19 mm x 5 pm; Mobile phase: from 5% MeCN in water [0.1% TFA] to 95% MeCN in water [0.1% TFA]; Wavelength: 220 nm; Flow rate: 25 ml/min) to deliver Example 9A-01 (33 mg, 28%) as a solid. Due to the purifaction solvent, the final compound was likely trifluoroacetate sait. 1H NMR (400 MHz, CD3OD) δ 8.31 (s, 1H), 8.03 (dd, 1H), 7.78 (d, 1H), 7.65 (t, 1H), 7.40-7.46 (m, 2H), 7.35 (t, 2H), 7.25-7.31 (m, 1H), 6.90 (d, 1H), 6.73 (d, 1H), 5.40 (s, 2H), 4.79 (s, 2H), 3.96 (s, 3H), 3.90 (d, 2H), 3.40 (m, 2H), 3.05 (brs, 1H), 2.14-2.37 (m, 4H); LC-MS(ES+): 457.1 (M+H).
The compounds listed in Table 4 below were prepared using procedures analogous to those described above for the synthesis of Examples 9A-01 using the appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using HPLC. Due to the purifaction solvent, the final compounds isolated using methods PFAB01 and PF-AB10 were likely trifluoroacetate salts, while compounds isolated using method PF-CD05 are likely ammonium salts.
120
Table 4
Ex. # Name *MW found Ret. time (min) **Method
9A-02 2-{[4-(6-{[2-fluoro-4- (trifluoromethyl)benzyl]oxy}pyridin-2y I ) pi pe rid i n-1 -y I] m ethyl}-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 543 3.073 PF-AB01
9A-03 2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2y !}p i perid i n-1 -y l)methy l]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 493 2.897 PF-AB01
9A-04 2-[(4-{6-[(2,6-difluorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 493 2.333 PF-CD05
9A-05 2-[(4-{6-[(4-chlorobenzyl)oxy]pyridin-2y l}pi pe rid i n-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 491 2.934 PF-AB01
9A-06 2-[(4-{6-[(2-fluorobenzyl)oxy]pyridin-2y l}pi pe rid i n-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 475 2.86 PF-AB01
9A-07 2-[(4-{6-[(4-chlorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -yl)methyl]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 491 2.9 PF-AB01
9A-08 2-[(4-{6-[(2,3-difluorobenzyl)oxy]pyridin-2yl}pi perid in-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 493 2.883 PF-AB01
I2l
Ex. # Name ‘MW found Ret. time (min) **Method
9A-09 1-methyl-2-{[4-(6-{[4- (trifluoromethoxy)benzyl]oxy}pyridin-2- y I ) pi perid i n -1 -yl]methyl}-1 H-benzimidazole-6carboxylic acid 541 3.087 PF-AB01
9A-10 1-methyl-2-{[4-(6-{[2- (trifluoromethoxy)benzyl]oxy}pyridin-2- y I ) pi pe rid i n -1 -yl]methyl}-1 H-benzimidazole-6carboxylic acid 541 3.031 PF-AB01
9A-11 1-methyl-2-[(4-{6-[(2- methylbenzyl)oxy]pyridin-2-yl}piperidin-1yl)methyl]-1 H-benzimidazole-6-carboxylic acid 471 2.917 PF-AB01
9A-12 2-[(4-{6-[(3-cyanobenzyl)oxy]pyridin-2y l}pi pe rid i n-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 482 2.681 PF-AB01
9 A-13 1 -methyl-2-{[4-(6-{[4- (trifluoromethyl)benzyl]oxy}pyridin-2y l)piperid in-1 -yljmethy l}-1 H-benzimidazole-6carboxylic acid 525 3.056 PF-AB01
9A-14 2-[(4-{6-[(2,5-difluorobenzyl)oxy]pyridin-2yl}piperid i n-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 493 2.897 PF-AB01
9 A-15 2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2y l}piperid in-1 -y l)methy I]-1 -methyl-1 Hbenzimidazole-6-carboxylic acid 482 2.753 PF-AB01
*MW found: MS(ES+): as (M+H)
122 **HPLC purification method PF-AB01: Mobile Phase A: 0.0375% TFA in H2O. Mobile
Phase B: 0.01875% TFA in MeCN. Initial conditions: B: 1%, A: 99%. Gradient: B: 1%, A:
99% to B: 5%, A: 95% from t = 0.00 min to 0.60 min, then to B: 100% from t = 0.60 min to 4.00 min, then to B: 1%, A: 99% from t = 4.00 min to 4.30 min, hold until t = 4.70 min.
Flow rate = 0.8 mL/min, 2 pL injection volume.
**HPLC purification method PF-CD05: Mobile Phase A: 0.05% NH4OH in H2O. Mobile Phase B: 100% MeCN. Initial conditions: B: 5%, A: 95%. Gradient: B: 5%, A: 95% to B: 100%, from t = 0.50 min to 3.40 min, hold until t = 4.20 min then to B: 5%, A: 95% from t = 4.21 min to 4.70 min, hold until t = 4.70 min. Flow rate = 0.8 mL/min, 2 pL injection volume.
Example 10A-01
2-[(4-{6-[(4-Chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3-oxazol-5ylmethyl)-1 H-benzimidazole-6-carboxylic acid
Step 1
To a colorless solution of methyl 3-fluoro-4-nitrobenzoate (302 mg, 1.52 mmol) and oxazol-5-ylmethanamine (164 mg, 1.67 mmol) in DMF (5.0 mL) was added EtsN (460 mg, 4.55 mmol) slowly at 20 °C. The brown solution was stirred at 60 °C for 36 h. The mixture was diluted with EtOAc (50 mL) and washed with H2O (50 mL). The organic phase was separated and the aq. phase extracted with EtOAc (2 x 50 mL). The combined organic extracts were dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (10-100% EtOAc/PE) to give methyl
4-nitro-3-((oxazol-5-ylmethyl)amino)benzoate (320 mg, 76%) as orange solid. 1H NMR (CDCh) δ 8.26 (d, 2H), 7.89 (s, 1 H), 7.66 (d, 1 H), 7.35 (dd, 1 H), 7.11 (s, 1 H), 4.68 (d, 2H), 3.96 (s, 3H).
Step 2
123
To a yellow suspension of methyl 4-nitro-3-((oxazol-5-ylmethyl)amino)benzoate (67 mg, 0.24 mmol) in MeOH (8 mL) was added 10% Pd/C (10.3 mg). The mixture was stirred under 1 atm H2 at RT for 1 h. The solids were removed by filtration and rinsed with MeOH (20 mL). The combined organic layers were then concentrated under reduced pressure to give methyl 4-amino-3-((oxazol-5-ylmethyl)amino)benzoate (56 mg, 94%) as a white solid. LC-MS(ES+): 247.9 (M+H).
Step 3
To a yellow solution of Intermediate 5 (85 mg, 0.22 mmol), 4-amino-3-((oxazol-5ylmethyl)amino)benzoate (55.5 mg, 0.224 mmol) and HATU (111 mg, 0.292 mmol) in DMF (2 mL) was added EtaN (114 mg, 1.12 mmol, 0.15 mL). The yellow solution was stirred at 25 °C for 16 h. The mixture was then poured into H2O (8 mL) and extracted with EtOAc (3 x 10 mL). The combined organic extracts were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by by prep-TLC (EtOAc) to give methyl 4-(2-(4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)acetamido)-3-((oxazol-5ylmethyl)amino)benzoate (58 mg, 43%) as a yellow oil. LC-MS(ES+): 630.0 (M+Na).
Step 4
A yellow solution of methyl 4-(2-(4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)piperidin-1-yl)acetamido)-3-((oxazol-5-ylmethyl)amino)benzoate (58 mg, 0.095 mmol) in AcOH (0.5 mL) was stirred at 60 °C for 3 h and then at RT for 16 h. The yellow residue was neutralized with sat. aq. Na2COs and extracted with DCM (3x10 mL). The combined organic extracts was dried over Na2SO4, filtered and concentrated under reduced pressure to give methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1yl)methyl)-1-(oxazol-5-ylmethyl)-1 H-benzo[d]imidazole-6-carboxylate (56 mg, 99%) as a yellow oil. LC-MS(ES+): 612.0 (M+Na).
Step 5
To a solution of methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2y I ) p i pe rid i n -1 -yl)methyl)-1 -(oxazol-5-ylmethyl)-1 H-benzo[d]imidazole-6-carboxylate (56 mg, 0.095 mmol) in THF (1 mL) and MeOH (0.2 mL) was added 2 M NaOH (0.0949 mL, 0.190 mmol). The yellow solution was stirred at 25 °C for 16 h and then stood for 48 h at 25 °C. The yellow solution was concentrated under reduced pressure and the residue then dissolved in H2O (5 mL), acidified to pH ~5 with 1 M HCl and extracted with DCM (5
124 x 10 mL). The combined organic extracts were concentrated under reduced pressure and the résultant crude product purified by préparative HPLC (Column: Waters Xbridge Prep OBD C18 150 x 30 mm x 5 pm; Mobile phase: from 5% MeCN in water [0.1% TFA] to 95% MeCN in water [0.1% TFA]; Wavelength: 220 nm; Flow rate: 25 ml/min) to deliver Example 10A-01 (22 mg, 33%) as a solid. Due to the purifaction solvent, the final compound was likely isolated as the trifluoroacetate sait. 1H NMR (400 MHz, CD3OD) δ 8.41 (s, 1H), 8.18 (s, 1H), 8.03 (dd, 1H), 7.80 (d, 1H), 7.61-7.70 (m, 1H), 7.52 (t, 1H), 7.36 (s, 1H), 7.20-7.30 (m, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.78 (s, 2H), 5.45 (s, 2H), 4.91 (br s, 2H), 3.97 (d, 2H), 3.42 (br s, 2H), 3.07 (br s, 1H), 2.17-2.33 (m, 4H); LC-MS(ES+):
576.1 (M+H).
Example 10A-02 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy l]-1 -[(1 -ethyl-1 Himidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid
Step 1
To a solution of Intermediate 29 (200 mg, 0.829 mmol) in DMF (8 mL) was added (1 -ethyl-1 H-imidazol-5-yl)methanamine (104 mg, 0.829 mmol) and NaHCOs (348 mg, 4.15 mmol). The reaction mixture was stirred at 60 °C for 16 h. The reaction mixture was poured into water (10 mL) and then extracted with EtOAc (2 x 30 mL). The combined organic extracts were washed with brine (2 x 20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (0 to 5% MeOH/DCM) to give tert-butyl 3-(((1-ethyl-1 H-imidazol-5yl)methyl)amino)-4-nitrobenzoate (105 mg, 37%) as a pale red oil. 1H NMR (CDCI3) δ 8.23 (d, 1H), 7.96 (br s, 1H), 7.66 (d, 1H), 7.57 (s, 1H), 7.28 (dd, 1H), 7.12 (s, 1H), 4.54 (d, 2H), 4.00 (q, 2H), 1.62 (s, 9H), 1.47 (t, 3H).
Step 2
To a solution of tert-butyl 3-(((1-ethyl-1 H-imidazol-5-yl)methyl)amino)-4nitrobenzoate (105 mg, 0.303 mmol) in MeOH (3 mL) and H2O (1 mL) was added Fe
125 powder (59.2 mg, 1.06 mmol) and NH4CI (292 mg, 5.46 mmol). The reaction mixture was stirred at 80 °C for 50 min. The reaction mixture was poured into water (10 mL) and extracted with EtOAc (3 x 15 mL). The combined organic extracts were dried over Na2SO4, filtered and concentrated under reduced pressure to deliver tert-butyl 4-amino3-(((1 -ethyl-1 H-imidazol-5-yl)methyl)amino)benzoate (93 mg, 97%) as a pale brown solid which was used directly in the next step.
Step 3
To a pale yellow solution of Intermediate 5 (55 mg, 0.15 mmol) and DMF (1 mL) was added HATU (66.2 mg, 0.174 mmol). The mixture was stirred at 30 °C for 10 min. A solution of tert-butyl 4-amino-3-(((1 -ethyl-1 H-imidazol-5-yl)methyl)amino)benzoate (45.9 mg, 0.145 mmol) and DIPEA (56.3 mg, 0.436 mmol) in DMF (1 mL) was added and the reaction was stirred at 30 °C for 16 h. The mixture was poured into water (10 mL) and then extracted with EtOAc (3 x 20 mL). The combined organic extracts were washed with aq NH4CI (3 x 20 mL), brine (2 x 20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by Prep-TLC (5% MeOH/DCM) to give tert-butyl 4-amino-3-(2-(4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin1-y|)-N-((1 -ethyl-1 H-imidazol-5-yl)methyl)acetamido)benzoate (60 mg, 61%) as a pale brown gum. LC-MS(ES+): 699.4 (M+Na).
Step 4
A pale brown solution of give tert-butyl 4-amino-3-(2-(4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)piperidin-1 -y l)-N-(( 1 -ethyl-1 H-imidazol-5-yl)methyl)acetamido)benzoate (60 mg, 0.089 mmol) in AcOH (2 mL) was stirred at 60 °C for 16 h. The reaction mixture was concentrated under vacuum to remove AcOH to deliver tert-butyl 2((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-1-((1-ethyl-1 Himidazol-5-yl)methyl)-1 H-benzo[d]imidazole-6-carboxylate (56 mg, 96%) as a pale brown gum which was used in the next step without further purification. LC-MS(ES+): 681.3 (M+Na).
Step 5
To a pale brown solution of tert-butyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)piperidin-1-yl)methyl)-1-((1 -ethyl-1 H-imidazol-5-yl)methyl)1 H-benzo[d]imidazole-6-carboxylate (56 mg, 0.085 mmol) in DCM (2 mL) was added TFA (1 mL). The reaction mixture was stirred at RT (10 °C) for 16 h. The reaction mixture was
126 concentrated under reduced pressure and the crude product purified by préparative HPLC (Column: Waters Xbridge Prep OBD C18 150 x 30 mm x 5 pm; Mobile phase: from 5% MeCN in water [0.1% TFA] to 95% MeCN in water [0.1% TFA]; Wavelength: 220 nm; Flow rate: 25 ml/min) to deliver Example 10A-02 (37 mg, 48%) as a beige solid. Due to 5 the purification solvent, the compound was likely isolated as the trifluoroacetate sait. 1H
NMR (400 MHz, CD3OD) δ 9.10 (d, 1H), 8.26 (s, 1H), 8.07 (dd, 1H), 7.88 (d, 1H), 7.66 (t, 1H), 7.52 (t, 1H), 7.19-7.28 (m, 2H), 7.08 (d, 1H), 6.93 (d, 1H), 6.73 (d, 1H), 5.88 (s, 2H), 5.45 (s, 2H), 4.84 (s, 2H), 4.36 (q, 2H), 3.98 (d, 2H), 3.41 (t, 2H), 3.06 (t, 1H), 2.14-2.40 (m, 4H), 1.58 (t, 3H); LC-MS(ES+): 603.1 (M+H).
The compounds listed in Table 5 below were prepared using procedures analogous to those described above for the synthesis of Examples 10A-01 or 10A-02 using the appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using methods well known to those skilled in the art and may include silica gel chromatography, HPLC, or crystallization from the reaction mixture. The final compounds may hâve been isolated as neutrals or acid or base salts.
Table 5
Ex. # Name NMR data/LC-MS data
10A-03 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -y l)methy !]-1 [(4,4-dimethyloxetan-2yl)methyl]-1 Hbenzimidazole-6carboxylic acid, enantiomer 1 Column: OD-H 4.6 x 100 mm, 5 pm Mobile phase A: CO2; Mobile phase B: MeOH with 0.2% NH4OH; 80:20 A/B Hoid for 10 min, Column Temp: 40 °C, Back Pressure: 150 Bar, Flow: 1.5 mL/min. Rétention time = 4.53 min. LC-MS(ES+): 593.4 (M+H).
127
Ex. # Name NMR data/LC-MS data
10A-04 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi pe rid i n -1 -y l)methy l]-1 [(4,4-dimethyloxetan-2yl)methyl]-1Hbenzimidazole-6carboxylic acid, enantiomer 2 Column: OD-H 4.6 x 100 mm, 5 pm; Mobile phase A: CO2; Mobile phase B: MeOH with 0.2% NH4OH; 80:20 A/B Hold for 10 min, Column Temp: 40 °C, Back Pressure: 150 Bar, Flow: 1.5 mL/min. Rétention time = 4.00 min. LC-MS(ES+): 593.4 (M+H).
10A-05 2-[(4-{6-[(2,4difluorobenzyl)oxy]pyridin2-y l}p i perid i n-1 -yl)methyl]1-[(2S)-oxetan-2- ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35-8.28 (m, 1H), 7.97 (dd, 1H), 7.67 (dd, 1H), 7.62-7.46 (m, 2H), 7.01-6.89 (m, 2H), 6.86-6.77 (m, 1H), 6.62 (dd, 1H), 5.39 (s, 2H), 5.27 (m, 1H), 4.85 (m, 1H), 4.72 (dd, 1H), 4.63 (m, 1H), 4.47 (m, 1H), 4.14 (d, 1H), 4.02 (d, 1H), 3.18 (d, 1H), 3.07 (d, 1H), 2.86-2.65 (m, 2H), 2.60-2.38 (m, 3H), 1.92 (m, 4H). MS(ES+): 549.3 (M+H).
10A-06 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n-1 -y l)m eth y I]-1 {[4-(propan-2-yl)-4H-1,2,4triazol-3-y l]methy l}-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35-8.28 (m, 1H), 7.97 (dd, 1H), 7.67 (dd, 1H), 7.62-7.46 (m, 2H), 7.01-6.89 (m, 2H), 6.86-6.77 (m, 1H), 6.62 (dd, 1H), 5.39 (s, 2H), 5.27 (m, 1H), 4.85 (m, 1H), 4.72 (dd, 1H), 4.63 (m, 1H), 4.47 (m, 1H), 4.14 (d, 1H), 4.02 (d, 1H), 3.18 (m, 1H), 3.07 (m, 1H), 2.86-2.65 (m, 2H), 2.60-2.38 (m, 3H), 1.92 (m, 4H). MS(ES+): 549.3 (M+H).
128
Ex. # Name NMR data/LC-MS data
10A-07 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n -1 -y I) m ethy I]-1 [(4-ethy I-4H-1,2,4-triazol3-yl)methyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.67 (s, 1H), 8.37 (d, 1H), 8.08 (dd, 1H), 7.86 (d, 1H), 7.67 (dd, 1H), 7.54 (t, 1H), 7.32-7.18 (m, 2H), 6.96 (d, 1H), 6.74 (d, 1H), 6.01 (s, 2H), 5.49 (s, 2H), 4.39 (q, 2H), 3.93 (s, 2H), 3.43 (d, 3H), 3.09 (s, 1H), 2.29 (m, 4H), 1.57 (t, 3H). MS(ES+): 604.3 (M+H).
10A-08 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perazi n -1 -yl)methyl]1-[(2S)-oxetan-2ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1H), 7.99 (dd, 1H), 7.69 (d, 1H), 7.46 (m, 2H), 7.20 (m, 2H), 6.29 (d, 1H), 6.12 (d, 1H), 5.35 (s, 2H), 5.29 (m, 1H), 4.93 (d, 2H), 4.75 (dd, 1H), 4.66 (m, 1H), 4.49 (m, 1H), 4.05 (d, 1H), 3.94 (d, 1H), 3.53 (t, 4H), 2.89-2.74 (m, 1H), 2.70-2.46 (m, 5H). MS(ES+): 566.1 (M+H).
10A-09 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-3-[(2S)-oxetan2-ylmethyl]-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.24-8.11 (m, 2H), 7.63 (t, 1H), 7.60-7.51 (m, 2H), 7.46 (m, 1H), 6.30 (d, 1H), 6.16 (d, 1H), 5.45 (s, 2H), 5.34 (m, 1H), 4.99 (d, 2H), 4.73-4.53 (m, 2H), 4.30 ( m, 1H), 3.96-3.86 (m, 1H), 3.79 (dd, 2H), 3.10 (m, 1H), 2.91 (dd, 1H), 2.88-2.70 (m, 2H), 2.65 (m, 1H), 2.56-2.33 (m, 2H), 1.21 (d, 3H). MS(ES+): 572.1 (M+H).
129
Ex. # Name NMR data/LC-MS data
10A-10 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-3-[(2S)-oxetan2-ylmethyl]-3Himidazo[4,5-b]pyridine-5carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.22-8.09 (m, 2H), 7.45 (m, 2H), 7.25-7.14 (m, 2H), 6.28 (d, 1H), 6.11 (d, 1H), 5.35 (m, 3H), 5.04-4.94 (m, 2H), 4.71-4.56 (m, 2H), 4.30 (m, 1H), 3.95 (d, 1H), 3.81 (dd, 2H), 3.17-3.07 (m, 1H), 2.94 (dd, 1H), 2.78 (m, 2H), 2.71-2.59 (m, 1H), 2.57-2.38 (m, 2H), 1.22 (d, 3H). MS(ES+): 581.0 (M+H).
1OA-11 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -y l)methy l]-1 [2-(dimethylamino)ethyl]- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.40 (d, 1H), 8.06 (dd, 1 H), 7.82 (d, 1 H), 7.66 (dd, 1 H), 7.51 (t, 1 H), 7.27-7.19 (m, 2H), 6.93 (d, 1H), 6.73 (d, 1H), 5.44 (s, 2H), 4.80 (brs, 2H), 3.89 (m, 2H), 3.63 (m, 2H), 3.05 (s, 6H), 2.22 (m, 5H). MS(ES+): 566.1 (M+H).
10A-12 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n-1 -yl)methyl]-1 - [2-(2-oxopyrrolidin-1 yl)ethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.30 (d, 1H), 8.01 (dd, 1H), 7.78 (d, 1H), 7.70-7.62 (m, 1H), 7.52 (m, 1H), 7.28-7.14 (m, 2H), 6.94 (d, 1H), 6.73 (d, 1H), 5.45 (s, 2H), 4.85 (s, 2H), 4.61 (t, 2H), 3.99 (m, 2H), 3.73 (t, 2H), 3.52 (t, 2H), 3.43 (m, 2H), 3.05 (m, 1H), 2.37-2.19 (m, 4H), 1.98 (m, 2H), 1.91-1.80 (m, 2H). MS(ES+): 606.0 (M+H).
10A-13 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1 -(1,3-oxazol-4ylmethyl)-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.41 (d, 1H), 8.25 (d, 2H), 8.07 (dd, 1H), 7.80 (d, 1H), 7.55 (m, 1H), 7.47 (m, 1H), 7.29-7.15 (m, 2H), 6.43 (d, 1H), 6.24 (d, 1H), 5.78-5.59 (m, 2H), 5.39 (s, 2H), 5.17 (d, 1H), 4.74 (d, 1H), 4.08 (m, 2H), 3.74- 3.41 (m, 4H), 1.55 (d, 3H). MS(ES+): 591.1 (M+H).
130
Ex. # Name NMR data/LC-MS data
10A-14 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1 -(1,3-oxazol-4ylmethyl)-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.42 (d, 1H), 8.27 (d, 2H), 8.08 (dd, 1H), 7.81 (d, 1H), 7.67 (m, 1H), 7.62-7.52 (m, 3H), 6.46 (d, 1H), 6.29 (d, 1H), 5.80-5.58 (m, 2H), 5.49 (s, 2H), 5.20 (d, 1H), 4.79 (d, 1H), 4.12 (m, 1H), 4.00 (m, 1H), 3.66 (m, 3H), 3.50 (s, 2H), 1.54 (d, 3H). MS(ES+): 582.1 (M+H).
10A-15 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methy I}-1 -(1,3-oxazol-2ylmethyl)-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.44-8.28 (m, 1 H), 8.09 (dd, 1H), 7.97 (s, 1H), 7.83 (d, 1H), 7.717.51 (m, 4H), 7.20 (s, 1H), 6.43 (d, 1H), 6.28 (d, 1H), 5.90 (d, 2H), 5.48 (s, 2H), 5.02 (d, 1H), 4.62 (d, 1H), 4.03 (m, 2H), 3.59 (m, 2H), 3.47 (s, 1H), 3.24 (m, 1H), 1.47 (d, 3H). MS(ES+): 582.1 (M+H).
10A-16 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methyl}-1 -(1,3-oxazol-5ylmethyl)-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.51-8.40 (m, 1H), 8.20 (s, 1H), 8.09 (dd, 1H), 7.81 (d, 1H), 7.54 (t, 1H), 7.47 (t, 1H), 7.38 (s, 1H), 7.21 (m, 2H), 6.42 (d, 1H), 6.24 (d, 1H), 5.86 (d, 2H), 5.38 (s, 2H), 5.01 (d, 1H), 4.62 (d, 1H), 4.12 (m, 2H), 3.673.36 (m, 4H), 3.24 (s, 1H), 1.49 (d, 3H). MS(ES+): 591.1 (M+H).
10A-17 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1 -(1,3-oxazol-5ylmethyl)-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.46 (d, 1H), 8.20 (s, 1H), 8.09 (dd, 1H), 7.82 (d, 1H), 7.66 (m, 1H), 7.63-7.54 (m, 3H), 7.38 (s, 1 H), 6.44 (d, 1 H), 6.28 (d, 1H), 5.86 (d, 2H), 5.48 (s, 2H), 5.01 (d, 1H), 4.63 (d, 1H), 4.25-3.88 (m, 2H), 3.59 (m, 2H), 3.50 (m, 1H), 3.25 (m, 2H), 1.47 (d, 3H). MS(ES+): 582.1 (M+H). _
I3l
Ex. # Name NMR data/LC-MS data
10A-18 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y I] methy l}-1 -(1,3-oxazol-2ylmethyl)-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.38 (d, 1H), 8.08 (dd, 1H), 7.97 (s, 1H), 7.82 (d, 1H), 7.53 (t, 1H), 7.46 (t, 1H), 7.29-7.13 (m, 3H), 6.41 (d, 1H), 6.24 (d, 1H), 5.90 (d, 2H), 5.38 (s, 2H), 5.02 (d, 1H), 4.61 (d, 1H), 4.11 (d, 1H), 4.01 (d, 1H), 3.58 (m, 2H), 3.48 (m, 1H), 3.25 (m, 1H), 1.49 (d, 3H). MS(ES+): 591.1 (M+H).
10A-19 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -y l)methy l]-1 - [(1 -methylazetidin-3yl)methyl]-1Hbenzimidazole-6carboxylic acid LCMS E(4-302) XBridge C18 2.1 x 50 mm, 5 pm; Mobile phase: 1.0% MeCN in water (0.1% TFA) to 5% MeCN in water (0.1% TFA) in 0.6 min; then from 5% MeCN in water (0.1% TFA) to 100% MeCN (0.1% TFA) in 3.4 min; then back to 1.0% ACN in water (0.1% TFA) till 4.3 min, and hold 0.7 min. Flow rate : 0.8 ml/min. Rétention time = 2.541 min. MS(ES+): 578.2 (M+H).
10A-20 2-[(4-{6-[(4-ch loro-2fluorobenzyl)oxy]pyridin-2y l}p iperid i n-1 -y I) m ethy I]-1 [(4,5-dimethyl-4H-1,2,4triazol-3-yl)methyl]-1 Hbenzimidazole-6carboxylic acid Column: Waters Atlantis dC18 4.6 x 50 mm, 5 pm; Mobile phase A: 0.05% TFA in water (v/v); Mobile phase B: 0.05% TFA in MeCN (v/v); Gradient: 95% H2O/5% MeCN linear to 5% H2O/95% MeCN in 4.0 min, hold at 5% H2O/95% MeCN to 5.0 min. Flow: 2 mL/min. Rétention time = 2.62 min. MS(ES+): 604.4 (M+H).
I32
Ex. # Name NMR data/LC-MS data
10A-21 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1 -[(4-ethyl-4H1,2,4-triazol-3-yl)methyl]1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz CD3OD) δ 8.72 (s, 1 H), 8.42- 8.35 (m, 1H), 8.10 (dd, 1H), 7.86 (dd, 1H), 7.54 (m, 1H), 7.47 (m, 1H), 7.27-7.18 (m, 2H), 6.43 (d, 1H), 6.25 (d, 1H), 6.03 (d, 2H), 5.38 (m, 2H), 5.08 (d, 1H), 4.71 (d, 1H), 4.38 (q, 2H), 4.15-3.91 (m, 2H), 3.81-3.50 (m, 3H), 3.45-3.34 (m, 2H), 1.58 (t, 3H), 1.52 (d, 3H). MS(ES+): 619.1 (M+H).
10A-22 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methy I}-1 -[(1 -methyl1H-1,2,3-triazol-5yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.25-8.02 (m, 2H), 7.77 (d, 1H), 7.43 (m, 2H), 7.28-7.11 (m, 3H), 6.21 (d, 1H), 6.09 (d, 1H), 5.93 (s, 2H), 5.32 (s, 2H), 4.41 (d, 1H), 4.17 (s, 3H), 3.67 (m, 2H), 3.50 (m, 1H), 2.90-2.72 (m, 2H), 2.63-2.52 (m, 2H), 2.32 (m, 1H), 1.17 (d, 3H).MS(ES+): 605.3 (M+H).
1OA-23 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methy I}-1 -[(1 -methyl- 1 H-1,2,3-triazol-5yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.16 (s, 1H), 8.04 (d, 1H), 7.76 (d, 1H), 7.50-7.66 (m, 3H), 7.42 (t, 1H), 7.12 (s, 1H), 6.21 (d, 1H), 6.12 (d, 1H), 5.91 (s, 2H), 5.41 (s, 2H), 4.60 (br s, 1 H), 4.39 (d, 1 H), 4.16 (s, 3H), 3.66 (d, 1H), 3.58 (d, 1H), 3.42 (br s, 1H), 2.68-2.80 (m, 2H), 2.46-2.61 (m, 2H), 2.22-2.31 (m, 1H), 1.14 (d, 3H). MS(ES+): 596.1 (M+H).
133
Ex. # Name NMR data/LC-MS data
1OA-24 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}pi perid in-1 -yl)methyl]-3(1,3-oxazol-5-ylmethyl)3H-imidazo[4,5-b]pyridine5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35-8.14 (m, 3H), 7.78-7.67 (m, 2H), 7.67-7.55 (m, 2H), 7.38 (s, 1H), 6.98 (d, 1H), 6.82 (d, 1H), 5.88 (s, 2H), 5.59 (s, 2H), 4.98 (s, 2H), 4.01 (m, 2H), 3.46 (m, 2H), 3.09 (m, 1H), 2.27 (m, 4H). MS(ES+): 568.0 (M+H).
10A-25 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methy I}-1 -[(1 -methyl- 1 H-imidazol-5-yl)methyl]- 1 H-benzimidazole-6carboxylic acid 1H NMR (600 MHz, DMSO-d6) δ 12.78 (brs, 1H), 8.07 (s, 1H), 7.87 (d, 1H), 7.82 (d, 1H), 7.77 (br s, 1 H), 7.70 (d, 2H), 7.63 (t, 1 H), 7.44 (t, 1 H), 6.48 (brs, 1H), 6.29 (d, 1H), 6.10 (d, 1H), 5.74 (s, 2H), 5.38 (s, 2H), 4.28 (d, 1H), 3.65 (d, 2H), 3.62 (s, 3H), 3.55 (d, 1H), 2.86 (t, 1H), 2.76 (dd, 1H), 2.53-2.65 (m, 2H), 2.27 (t, 1H), 1.06 (d, 1H). MS(ES+): 595.6 (M+H).
10A-26 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n -1 -yl)methyl]-1 [(1methoxycyclobutyl)methyl] -1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.03 (dd, 1H), 7.80 (d, 1H), 7.68 (m,1H), 7.53 (m, 1H), 7.33-7.17 (m, 2H), 6.95 (d, 1H), 6.75 (d, 1H), 5.47 (s, 2H), 4.83 (s, 2H), 4.65 (s, 2H), 3.92 (m, 2H), 3.42 (m, 2H), 3.36 (s, 3H), 3.16-2.96 (m, 1H), 2.51 (m, 2H), 2.27 (m, 4H), 2.06-1.91 (m, 1H), 1.87 (m, 4H). MS(ES+): 593.1 (M+H).
10A-27 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 [(3-methyloxetan-3yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.11 (d, 1 H), 8.027.91 (m, 1H), 7.67-7.55 (m, 2H), 7.50 (m, 1H), 7.29-7.15 (m, 2H), 6.83 (d, 1H), 6.64 (d, 1H), 5.44 (s, 2H), 4.86 (d, 2H), 4.72 (s, 2H), 4.41 (d, 2H), 3.85 (s, 2H), 3.00 (m, 2H), 2.66 (m, 1H), 2.33-2.23 (m, 2H), 2.04-1.77 (m, 4H), 1.41 (s, 3H). MS(ES+): 579.3 (M+H).
134
Ex. # Name NMR data/LC-MS data
1OA-27 2-[(4-{6-[(4cyanobenzyl)oxy]pyridin2-y l}p i pe rid i n-1 -yl)methyl]1 -(oxetan-3-ylmethyl)-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.28 (d, 1H), 7.99 (dd, 1H), 7.75-7.55 (m, 6H), 6.84 (d, 1H), 6.69 (d, 1H), 5.48 (s, 2H), 4.87-4.72 (m, 6H), 3.92 (s, 2H), 3.87-3.76 (m, 1H), 3.06 (d, 2H), 2.66 (m, 1H), 2.34 (m, 2H), 1.96-1.80 (m, 4H). MS(ES+): 538.3 (M+H).
10A-28 2-[(4-{6-[(4-ch loro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -yl)methyl]-1 [2-(5-methyl-1,3,4oxadiazol-2-yl)ethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.26 (d, 1H), 8.03 (dd, 1H), 7.80 (d, 1H), 7.69 (dd, 1H), 7.54 (m, 1H), 7.31-7.16 (m, 2H), 6.97 (d, 1H), 6.76 (d, 1H), 5.49 (s, 2H), 4.97 (s, 2H), 4.00 (m, 2H), 3.59 (m, 2H), 3.47 (m, 2H), 3.11 (m, 1 H), 2.45 (s, 2H), 2.43-2.20 (m, 3H). MS(ES+): 605.2 (M+H).
10A-29 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n -1 -yl)methyl]-1 [(5-methyl-1,3,4oxadiazol-2-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.40 (s, 1H), 8.06 (d, 1H), 7.84 (d, 1H), 7.67 (t, 1H), 7.52 (t, 1H), 7.24 (t, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.96 (s, 2H), 5.46 (s, 2H), 3.95 (br s, 2H), 3.36-3.51 (m, 2H), 3.07 (br s, 1 H), 2.53 (s, 3H), 2.24 (br s, 4H). MS(ES+): 591.0 (M+H).
10A-30 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n -1 -yl)methyl]-1 [(1 -methyl-1 H-imidazol-4yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.40 (d, 1H), 8.05 (dd, 1H), 7.90 (d, 1H), 7.80 (d, 1H), 7.70 (m, 1H), 7.59-7.50 (m, 2H), 7.29-7.20 (m, 2H), 6.99 (d, 1H), 6.78 (d, 1H), 5.70 (s, 2H), 5.50 (s, 2H), 3.81 (d, 2H), 3.72 (s, 3H), 3.44 (m, 1H), 3.21-3.07 (m, 1H), 2.27 (m, 4H). MS(ES+): 589.2 (M+H).
I35
Ex. # Name NMR data/LC-MS data
10A-31 2-[(4-{6-[(2,4- difluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methyl]- 1 -(1,3-oxazol-2-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.06 (dd, 1H), 7.99 (s, 1H), 7.84 (d, 1H), 7.68 (dd, 1H), 7.57 (m, 1H), 7.20 (s, 1H), 7.07-6.92 (m, 3H), 6.75 (d, 1H), 5.87 (s, 2H), 5.45 (s, 2H), 4.94 (s, 2H), 3.98 (m, 2H), 3.46 (m, 2H), 3.10 (m, 1H), 2.30 (m, 4H). MS(ES+): 589.2 (M+H).
10A-32 2-[(4-{6-[(2,4- difluorobenzyl)oxy]pyridin- 2-y l}piperid in-1 -yl)methyl]1 -[(1 -ethyl-1 H-imidazol-5- yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.86 (s, 1 H), 8.23 (s, 1H), 8.06 (dd, 1H), 7.83 (d, 1H), 7.63 (dd, 1H), 7.50-7.59 (m, 1H), 6.93-7.03 (m, 3H), 6.87 (d, 1H), 6.69 (d, 1H), 5.88 (s, 2H), 5.41 (s, 2H), 4.51 (br s, 2H), 4.32 (q, 2H), 3.61 (d, 2H), 2.82-3.12 (m, 3H), 1.94-2.21 (m, 4H), 1.52 (t, 3H). MS(ES+): 587.2 (M+H).
1OA-33 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y IJpiperazi n-1 -yl)methyl]1-(1,3-oxazol-2-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.07 (dd, 1H), 7.95 (d, 1H), 7.81 (d, 1H), 7.50 (m, 2H), 7.28-7.12 (m, 3H), 6.38 (d, 1H), 6.22 (d, 1H), 5.91 (s, 2H), 5.37 (s, 2H), 4.57 (s, 2H), 3.69 (s, 4H), 3.22 (s, 4H). MS(ES+): 577.1 (M+H).
10A-34 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]1 -(1,3-oxazol-2-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.39 (d, 1H), 8.09 (dd, 1H), 7.98 (d, 1H), 7.84 (d, 1H), 7.67 (m, 1H), 7.63-7.53 (m, 3H), 7.21 (d, 1H), 6.45 (d, 1H), 6.30 (d, 1H), 5.89 (s, 2H), 5.49 (s, 2H), 4.81 (s, 2H), 3.80 (brs, 4H), 3.48 (brs, 4H). MS(ES+): 568.2 (M+H).
136
Ex. # Name NMR data/LC-MS data
10A-35 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperazi n-1 -yl)methyl]1-[(1-ethyl-1H-imidazol-5yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.07 (d, 1H), 8.26 (dd, 1H), 8.09 (dd, 1H), 7.85 (dd, 1H), 7.66 (dd, 1H), 7.62-7.47 (m, 3H), 7.10 (d, 1H), 6.35 (d, 1H), 6.24 (d, 1H), 5.96-5.85 (m, 2H), 5.45 (s, 2H), 4.43-4.29 (m, 4H), 3.53 (m, 4H), 3.00 (m, 4H), 1.58 (t, 3H). MS(ES+): 595.1 (M+H).
10A-36 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]1 -[(1 -methyl-1 H-imidazol5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.21-8.13 (m, 1H), 8.02 (dd, 1H), 7.78-7.65 (m, 2H), 7.45 (m, 2H), 7.27-7.12 (m, 2H), 6.67 (s, 1H), 6.25 (d, 1H), 6.12 (d, 1H), 5.80 (s, 2H), 5.41-5.28 (m, 2H), 3.91 (s, 2H), 3.67 (s, 3H), 3.44-3.34 (m, 4H), 2.55 (m, 4H). MS(ES+): 590.0 (M+H).
10A-37 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]1 -[(1 -methyl-1 H-imidazol5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid Ή NMR (400 MHz, CD3OD) δ 8.17 (dd, 1H), 8.02 (dd, 1H), 7.76-7.70 (m, 2H), 7.68-7.62 (m, 1H), 7.56 (m, 2H), 7.45 (t, 1H), 6.66 (d, 1H), 6.26 (d, 1H), 6.15 (d, 1H), 5.80 (d, 2H), 5.43 (s, 2H), 3.90 (s, 2H), 3.67 (s, 3H), 2.53 (t, 4H). MS(ES+): 581.1 (M+H).
10A-38 2-[(4-{6-[(4-ch loro-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n -1 -yl)methyl]-1 [(1 -methyl-1 H-imidazol-2yl)methyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 6.75 (d, 1H), 6.526.44 (m, 1H), 6.26 (dd, 1H), 6.09 (m, 1H), 5.92 (m, 1H), 5.73 (d, 1H), 5.65 (m, 2H), 5.55 (dd, 1H), 5.37 (dd, 1H), 5.17 (dd, 1H), 4.40 (brs, 2H), 3.89 (m, 2H), 3.23 (s, 2H), 2.48 (m, 3H), 2.21 (m, 2H), 1.85-1.67 (m, 2H), 1.54-1.42 (m, 1H), 0.60 (m, 4H). MS(ES+): 589.1 (M+H).
137
Ex. # Name NMR data/LC-MS data
10A-39 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 ethyl-1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.32 (s, 1H), 8.03 (dd, 1H), 7.79 (d, 1H), 7.71-7.62 (m, 1H), 7.52 (m, 1H), 7.29-7.19 (m, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.45 (s, 2H), 4.81 (s, 2H), 4.44 (q, 2H), 3.94 (m, 2H), 3.37 (m, 2H), 3.06 (m, 1H), 2.25 (m, 4H), 1.49 (t, 3H). MS(ES+): 523.2 (M+H).
10A-40 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -yl)methyl]-1 (propan-2-yl)-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.48-8.39 (m, 1 H), 8.03 (dd, 1H), 7.81 (d, 1H), 7.69 (dd, 1H), 7.54 (m, 1H), 7.31-7.23 (m, 2H), 6.96 (d, 1H), 6.76 (d, 1H), 5.48 (s, 2H), 4.86 (s, 2H), 3.96 (m, 2H), 3.40 (m, 2H), 3.07 (m, 1H), 2.41-2.18 (m, 4H), 1.76 (d, 6H). MS(ES+): 536.9 (M+H).
10A-41 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y Ijpiperid i n -1 -y l)methy I]-1 (1,3-oxazol-4-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.37 (d, 1H), 8.22 (s, 2H), 8.03 (dd, 1H), 7.78 (d, 1H), 7.71-7.62 (m, 1H), 7.52 (m, 1H), 7.30-7.19 (m, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.69 (s, 2H), 5.46 (s, 2H), 4.80 (s, 2H), 3.76 (m, 2H), 3.24 (m, 2H), 3.02 (m, 1H), 2.19 (m, 4H). MS(ES+): 576.2 (M+H).
10A-42 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i pe rid i n -1 -yl)methyl]-1 (1,3-oxazol-2-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.06 (dd, 1H), 7.98 (d, 1H), 7.83 (d, 1H), 7.68 (dd, 1H), 7.53 (m,1H), 7.30-7.14 (m, 3H), 6.95 (d, 1H), 6.75 (d, 1H), 5.88 (s, 2H), 5.47 (s, 2H), 3.90 (m, 2H), 3.06 (m, 1H), 2.25 (m, 4H). MS(ES+): 576.2 (M+H).
138
Ex. # Name NMR data/LC-MS data
10A-43 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperid in-1 -y l)methyl]-1 (1,3-oxazol-5-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.42 (d, 1H), 8.19 (s, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.72 (m, 2H), 7.66-7.57 (m, 2H), 7.38 (s, 1H), 6.98 (d, 1H), 6.81 (d, 1H), 5.79 (s, 2H), 5.58 (s, 2H), 4.94 (s, 2H), 3.99 (m, 2H), 3.45 (m, 2H), 3.09 (m, 1H), 2.27 (m, 5H). MS(ES+): 567.1 (M+H).
10A-44 2-[(4-{6-[(2,4- difluorobenzyl)oxy]pyridin- 2-y IJpiperid in-1 -yl)methyl]- 1 -(1,3-oxazol-5-ylmethyl)- 1 H-benzimidazole-6- carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.42 (dd, 1H), 8.20 (s, 1H), 8.06-8.01 (m, 1H), 7.82 (dd, 1H), 7.68 (dd, 1H), 7.61-7.53 (m, 1H), 7.38 (s, 1H), 7.07- 6.92 (m, 3H), 6.75 (dd, 1H), 5.80 (s, 2H), 5.46 (s, 2H), 4.94 (s, 2H), 4.01 (m, 2H), 3.47 (m, 2H), 3.17-3.04 (m, 1H), 2.41-2.20 (m, 4H). MS(ES+): 560.1 (M+H).
10A-45 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]1 -(1,3-oxazol-5-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.44 (d, 1H), 8.18 (s, 1 H), 8.07 (dd, 1 H), 7.80 (d, 1 H), 7.54 (t, 1 H), 7.47 (t, 1H), 7.36 (s, 1H), 7.21 (t, 1H), 6.42 (d, 1H), 6.24 (d, 1H), 5.82 (s, 2H), 5.37 (s, 2H), 4.75 (s, 2H), 3.82 (brs, 4H), 3.43 (brs, 4H). MS(ES+): 577.1 (M+H).
10A-46 1 -[(4-tert-butyl-4H-1,2,4- triazol-3-yl)methyl]-2-[(4{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2- y l}piperid i n-1 -yl)methyl]- 1 H-benzimidazole-6- carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.71 (s, 1H), 8.18 (d, 1H), 8.06 (dd, 1H), 7.86 (d, 1H), 7.67 (dd, 1H), 7.54 (m, 1H), 7.31-7.18 (m, 2H), 6.95 (d, 1H), 6.74 (d, 1H), 6.11 (s, 2H), 5.47 (s, 2H), 4.84 (s, 2H), 3.96 (m, 2H), 3.41 (d, 2H), 3.09 (m, 1H), 2.28 (m, 4H), 1.90 (s, 9H). MS(ES+): 632.3 (M+H).
139
Ex. # Name NMR data/LC-MS data
1OA-47 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1 -[(2S)-oxetan2-ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, DMSO-d6) δ 12.75 (br s, 1H), 8.26 (d, 1H), 7.87 (dd, 1H), 7.80 (dd, 1H), 7.58-7.73 (m, 3H), 7.46 (t, 1 H), 6.33 (d, 1H), 6.11 (d, 1H), 5.39 (s, 2H), 5.09-5.21 (m, 1H), 4.714.80 (m, 2H), 4.43-4.52 (m, 1H), 4.35 (d, 1H), 4.27 (dt, 1H), 3.81 (d, 1H), 3.72 (d, 1H), 3.64 (d, 1H), 2.98 (t, 1H), 2.80 (dd, 1H), 2.63-2.73 (m, 2H), 2.57 (br s, 1 H), 2.24-2.42 (m, 2H), 1.09 (d, 3H). MS(ES+): 571.7 (M+H).
10A-48 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]1-[(2R)-oxetan-2ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.21 (d, 1H), 7.96 (dd, 1H), 7.61 (d, 1H), 7.46 (m, 2H), 7.25-7.16 (m, 2H), 6.29 (d, 1H), 6.12 (d, 1H), 5.35 (s, 2H), 5.34-5.26 (m, 1H), 4.74 (dd, 1H), 4.65 (m, 1H), 4.48 (m, 1H), 4.04 (d, 1H), 3.94 (d, 1H), 3.53 (t, 4H), 2.87-2.74 (m, 1H), 2.69-2.49 (m, 5H). MS(ES+): 566.1 (M+H).
10A-49 2-{[(2S)-4-{6-[(4- cyanobenzyl)oxy]pyridin- 2-yl}-2-methylpiperazin-1 yl]methyl}-1 -[(2S)-oxetan2-ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD 4) δ 8.35 (s, 1 H), 8.00 (d, 1H), 7.71 (dd, 3H), 7.58 (d, 2H), 7.46 (m, 1H), 6.29 (d, 1H), 6.16 (d, 1H), 5.40 (s, 2H), 5.31 (m, 1H), 4.84-4.74 (m, 1H), 4.70-4.49 (m, 3H), 4.41-4.30 (m, 1H), 3.78 (m, 3H), 3.09 (m, 1H), 2.92 (m, 1H), 2.77 (d, 2H), 2.64 (m, 1H), 2.44 (m, 2H), 1.20 (d, 3H). MS(ES+): 553.1 (M+H).
140
Ex. # Name NMR data/LC-MS data
10A-50 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 - (2-hydroxyethyl)-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.07 (dd, 1H), 7.83 (d, 1H), 7.67 (dd, 1H), 7.52 (m, 1H), 7.31-7.19 (m, 2H), 6.93 (d, 1H), 6.74 (d, 1H), 5.45 (s, 2H), 4.83 (s, 2H), 4.64 (m, 2H), 3.99 (m, 2H), 3.86 (m, 2H), 3.41 (m, 2H), 3.14-3.01 (m, 1H), 2.28-2.14 (m, 4H). MS(ES+): 539.2 (M+H).
10A-51 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n -1 -yl)methyl]-1 [(5-ethy 1-1,2,4-oxadiazol3-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1 H), 8.05 (dd, 1H), 7.83 (d, 1H), 7.69 (dd, 1H), 7.53 (m, 1H), 7.33-7.20 (m, 2H), 6.96 (d, 1H), 6.76 (d, 1H), 5.81 (s, 2H), 5.47 (s, 2H), 4.96 (s, 2H), 3.99 (m, 2H), 3.49 (m, 2H), 3.10 (m, 1H), 2.92 (q, 2H), 2.29 (m, 4H), 1.32 (t, 3H). MS(ES+): 605.1 (M+H).
10A-52 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1-yl)methyl]-1[(3-ethyl-1,2,4-oxadiazol5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.32 (d, 1H), 8.05 (dd, 1H), 7.84 (d, 1H), 7.66 (dd, 1H), 7.51 (m, 1H), 7.30-7.18 (m, 2H), 6.93 (d, 1H), 6.74 (d, 1H), 6.01 (s, 2H), 5.44 (s, 2H), 3.95 (m, 2H), 3.41 (m, 3H), 3.06 (m, 1H), 2.70 (q, 2H), 2.34-2.16 (m, 5H), 1.23 (t, 3H). MS(ES+): 605.1 (M+H).
141
Ex. # Name NMR data/LC-MS data
10A-53 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 [(2-methyloxetan-2yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1H), 8.00 (dd, 1H), 7.71 (d, 1H), 7.60 (dd, 1H), 7.50 (m, 1H), 7.21 (m, 2H), 6.85 (d, 1H), 6.70-6.62 (m, 1H), 5.43 (d, 2H), 4.88-4.81 (m, 1H), 4.66 (d, 2H), 4.48-4.37 (m, 1H), 4.19 (d, 1H), 4.12-4.02 (m, 2H), 3.12 (d, 2H), 2.70 (m, 1H), 2.50 (m, 3H), 1.90 (m, 4H), 1.55 (s, 3H). MS(ES+): 579.1 (M+H).
10A-54 2-[(4-{6-[(4-cyano-2- fluorobenzyl)oxy]-5fluoropyridin-2y IJpiperid in-1 -yl)methyl]-1 [(2S)-oxetan-2-ylmethyl]- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.32 (d, 1H), 7.98 (dd, 1H), 7.72 (t, 1H), 7.70-7.55 (m, 3H), 7.42 (dd, 1H), 6.86 (dd, 1H), 5.61 (s, 2H), 5.30 (m, 1H), 4.75 (dd, 1H), 4.70-4.60 (m, 1H), 4.50 (dt, 1H), 4.07 (d, 1H), 3.95 (d, 1H), 3.09 (d, 1H), 2.99 (d, 1H), 2.88-2.75 (m, 1H), 2.65 (m, 1H), 2.56 (m, 1H), 2.33 (ddd, 2H), 1.94-1.73 (m, 5H). MS(ES+): 574.1 (M+H).
10A-55 2-[(4-{6-[(4cyanobenzyl)oxy]-5fluoropyridin-2y l}piperid in-1 -y l)methy l]-1 [(2S)-oxetan-2-ylmethyl]1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, DMSO-d6) δ 8.27 (d, 1H), 7.90-7.83 (m, 2H), 7.80 (dd, 1H), 7.69-7.55 (m, 4H), 6.91 (dd, 1H), 5.53 (s, 2H), 5.16-5.05 (m, 1H), 4.80 (dd, 1H), 4.66 (dd, 1H), 4.47 (m, 1H), 4.38 (m, 1H), 3.94 (d, 1H), 3.78 (d, 1H), 2.98 (d, 1H), 2.85 (d, 1H), 2.77-2.53 (m, 2H), 2.48-2.31 (m, 1H), 2.19 (m, 2H), 1.71 (m, 4H). MS(ES+): 556.1 (M+H).
142
Ex. # Name NMR data/LC-MS data
10A-56 2-{[(2S)-4-{6-[(2,4- difluorobenzyl)oxy]-5fluoropyridin-2-yl}-2methylpiperazin-1- yl]methy l}-1 -[(2S)-oxetan- 2-ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1H), 8.00 (dd, 1H), 7.70 (d, 1H), 7.59-7.45 (m, 1H), 7.29 (dd, 1H), 7.03-6.91 (m, 2H), 6.22 (dd, 1H), 5.41 (s, 2H), 5.35-5.25 (m, 1H), 4.95 (m, 1H), 4.79 (dd, 1H), 4.68-4.53 (m, 2H), 4.36 (m, 1H), 3.85 (d, 1H), 3.72 (t, 2H), 3.07 (m, 1H), 2.90 (dd, 1H), 2.86-2.72 (m, 2H), 2.72-2.60 (m, 1H), 2.53-2.37 (m, 2H), 1.23 (d, 3H). MS(ES+): 582.1 (M+H).
10A-57 2-{[(2S)-4-{6-[(2,4- difluorobenzyl)oxy]-5fluoropyridin-2-yl}-2methylpiperazin-1yl]methyl}-1 -[(2R)-oxetan2-ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1H), 8.00 (dd, 1H), 7.70 (d, 1H), 7.58-7.46 (m, 1H), 7.31 (dd, 1H), 7.07-6.92 (m, 2H), 6.24 (dd, 1H), 5.42 (s, 2H), 5.27 (q, 1H), 5.09 (dd, 1H), 4.77-4.61 (m, 3H), 4.56 (dt, 1H), 4.01-3.90 (m, 1H), 3.82 (d, 1H), 3.64 (d, 1H), 3.03 (t, 1H), 2.93-2.74 (m, 3H), 2.74-2.55 (m, 2H), 2.44 (t, 1H), 1.35 (d, 3H). MS(ES+): 582.1 (M+H).
1OA-58 2-{[(2S)-4-{6-[(2,4difluorobenzyl)oxy]pyridin2-yl}-2-methylpiperazin-1 yl]methyl}-1 -[(2S)-oxetan2-ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.41-8.28 (m, 1H), 8.00 (dd, 1H), 7.70 (dd, 1H), 7.60-7.39 (m, 2H), 7.05-6.86 (m, 2H), 6.28 (d, 1H), 6.10 (d, 1H), 5.33 (s, 3H), 4.80 (dd, 1H), 4.67-4.52 (m, 2H), 4.37 (dt, 1H), 3.93 (d, 1H), 3.82 (d, 1H), 3.71 (d, 1H), 3.15-3.04 (m, 1H), 2.96 (dd, 1H), 2.86-2.73 (m, 2H), 2.72-2.61 (m, 1H), 2.56-2.35 (m, 2H), 1.23 (d, 3H). MS(ES+): 564.0 (M+H).
143
Ex. # Name NMR data/LC-MS data
10A-59 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 yl]methyl}-1-[(3R)tetrahydrofuran-3ylmethyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.45 (d, 1H), 8.14 (dd, 1H), 7.84 (d, 1H), 7.66 (m, 1H), 7.62-7.48 (m, 3H), 6.42 (d, 1H), 6.27 (d, 1H), 5.48 (s, 2H), 4.55-4.36 (m, 3H), 4.19-3.96 (m, 3H), 3.81 (m, 1H), 3.70 (m, 1H), 3.58 (m, 1H), 3.42 (s, 2H), 3.26 (m, 1H), 3.11 (m, 1H), 2.98 (m, 1H), 2.202.05 (m, 1H), 1.83 (m, 1H), 1.43 (d, 3H). MS(ES+): 585.1 (M+H).
10A-60 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi pe rid i n -1 -y l)methy l]-1 [(3R)-tetrahydrofuran-3yl]-1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.62 (s, 1 H), 8.03 (dd, 1H), 7.81 (d, 1H), 7.68 (t, 1H), 7.54 (t, 1H), 7.29-7.22 (m, 2H), 6.96 (d, 1H), 6.76 (d, 1H), 5.48 (s, 2H), 5.46-5.39 (m, 1H), 4.92 (s, 2H), 4.48 (td, 1H), 4.32 (dd, 1H), 4.10 (dd, 1H), 4.03-3.92 (m, 2H), 3.90-3.79 (m, 1H), 3.46 (t, 2H), 3.133.07 (m, 1H), 2.77-2.67 (m, 1H), 2.39-2.19 (m, 5H). MS(ES+): 565.4 (M+H).
10A-61 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}piperazi n-1 -yl)methy I]1 -(1,3-oxazol-5-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.44 (dd, 1H), 8.19 (s, 1H), 8.08 (dd, 1H), 7.81 (dd, 1H), 7.67 (m, 1H), 7.62-7.51 (m, 3H), 7.36 (s, 1H), 6.43 (d, 1H), 6.28 (d, 1H), 5.85 (s, 2H), 5.48 (s, 2H), 4.65 (s, 2H), 3.76 (brs, 4H). MS(ES+): 568.1 (M+H).
144
Ex. # Name NMR data/LC-MS data
10A-62 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -y I ) m ethy I]- 1 -[(1 -ethyl-1 H-1,2,3triazol-5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.27 (d, 1H), 8.11 (dd, 1H), 7.87 (d, 1H), 7.66 (t, 1H), 7.63-7.49 (m, 3H), 7.24 (s, 1H), 6.38 (d, 1H), 6.26 (d, 1H), 5.92 (s, 2H), 5.46 (s, 2H), 4.57-4.47 (m, 4H), 3.62 (s, 4H), 3.19 (s, 4H), 1.54 (t, 3H). MS(ES+): 596.1 (M+H).
10A-63 2-{[(2S)-4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methy I}-1 -[(1 -ethyl-1 Himidazol-5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.09 (d, 1H), 8.25 (d, 1H), 8.09 (dd, 1H), 7.85 (d, 1H), 7.72-7.41 (m, 4H), 7.08 (d, 1H), 6.36 (d, 1H), 6.24 (d, 1H), 5.93 (d, 2H), 5.56-5.39 (m, 2H), 4.77 (d, 1H), 4.49- 4.21 (m, 3H), 3.87 (dd, 2H), 3.23-3.11 (m, 1H), 2.97 (m, 1H), 1.61 (t, 3H), 1.37 (d, 3H). MS(ES+): 609.2 (M+H).
10A-64 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y Ijpiperid i n-1 -yl)methyl]-1 (1,2-oxazol-5-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.38 (dd, 2H), 8.06 (dd, 1H), 7.84 (d, 1H), 7.71-7.64 (m, 1H), 7.53 (m, 1H), 7.32-7.18 (m, 2H), 6.95 (d, 1H), 6.76 (d, 1H), 6.56 (d, 1H), 5.90 (s, 2H), 5.47 (s, 2H), 3.96 (m, 2H), 3.41 (s, 2H), 3.11 (m, 1H); 2.27 (m, 4H). MS(ES+): 576.1 (M+H).
10A-65 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -y l)methy l]-1 (1,2-oxazol-3-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.72 (d, 1H), 8.35 (s, 1H), 8.05 (d, 1H), 7.84 (d, 1H), 7.71 (m, 2H), 7.61 (m, 2H), 6.97 (d, 1H), 6.81 (d, 1H), 6.62 (d, 1H), 5.81 (s, 2H), 5.58 (s, 2H), 3.97 (m, 2H), 3.42 (m, 3H), 3.07 (m, 1H), 2.25 (d, 4H). MS(ES+): 567.1 (M+H).
145
Ex. # Name NMR data/LC-MS data
10A-66 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}p i perid i n -1 -y I )m ethy I]-1 [(1 -ethyl-1 H-imidazol-5yl)methyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.11 (d, 1 H), 8.27 (d, 1H), 8.09 (dd, 1H), 7.90 (d, 1H), 7.76-7.66 (m, 2H), 7.66-7.56 (m, 2H), 7.09 (d, 1H), 6.96 (d, 1H), 6.80 (d, 1H), 5.89 (d, 2H), 5.57 (s, 2H), 4.85 (s, 2H), 4.37 (m, 2H), 3.97 (d, 2H), 3.40 (d, 2H), 3.11-2.98 (m, 1H), 2.23 (m, 4H), 1.60 (t, 3H). MS(ES+): 594.1 (M+H).
10A-67 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}-2-methylpiperazin-1 y l]methy I}-1 -[( 1 -ethyl-1 Himidazol-5-yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.11 (d, 1H), 8.26 (s, 1H), 8.10 (dd, 1H), 7.87 (d, 1H), 7.52 (m, 1H), 7.45 (d, 1H), 7.26-7.15 (m, 2H), 7.10 (s, 1H), 6.38 (d, 1H), 6.28-6.15 (m, 1H), 5.92 (s, 2H), 5.36 (s, 2H), 4.39 (m, 3H), 4.00 (m, 2H), 3.48 (m, 4H), 3.15 (m, 1H), 1.62 (t, 3H), 1.44 (m, 3H). MS(ES+): 618.1 (M+H).
10A-68 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-1 (1,2-oxazol-4-ylmethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.77 (s, 1H), 8.47 (s, 1H), 8.30 (s, 1H), 8.03 (dd, 1H), 7.80 (d, 1H), 7.68-7.59 (m, 1H), 7.51 (m, 1H), 7.29-7.17 (m, 2H), 6.91 (d, 1H), 6.71 (d, 1H), 5.59 (s, 2H), 5.45 (s, 2H), 4.66 (brs, 2H), 3.76 (m, 2H), 3.32-3.04 (m, 2H), 2.97 (m, 1H), 2.17 (m, 5H). MS(ES+): 576.2 (M+H).
1OA-69 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n -1 -y I ) m ethy I]-1 [(1 -ethyl-1 H-1,2,3-triazol5-yl)methyl]-1Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.24 (d, 1H), 8.08 (dd, 1H), 7.89 (d, 1H), 7.76-7.67 (m, 2H), 7.677.55 (m, 2H), 7.25 (s, 1H), 6.96 (d, 1H), 6.81 (d, 1H), 5.89 (s, 2H), 5.58 (s, 2H), 4.78 (s, 2H), 4.53 (q, 2H), 3.95 (m, 2H), 3.04 (m, 1H), 2.23 (m, 4H), 1.54 (t, 3H). MS(ES+): 595.3 (M+H).
146
Ex. # Name NMR data/LC-MS data
10A-70 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}pi perid i n-1 -yl)methy l]-1 (1,2,4-oxadiazol-3ylmethyl)-1Hbenzimidazole-6carboxylic acid LCMS Ultimate XB-C18, 3 pm, 3.0 x 50 mm; Mobile phase: A: H2O (0.1% TFA), Mobile phase B: MeCN (0.1% TFA). Gradient: 1% B to 5% B in 1 min; then from 5% B to 100% B in 5 min; hold at 100% B for 2 min; back to 1.0% B at 8.01 min, hold two min. Flow rate:1.2 ml/min. Rétention time = 3.93 min. MS(ES+): 577.2 (M+H)
10A-71 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid in-1 -y l)methy l]-1 [(3S)-tetrahydrofuran-3yl]-1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.62 (s, 1H), 8.04 (dd, 1H), 7.81 (d, 1H), 7.69 (dd, 1H), 7.54 (t, 1H), 7.33-7.20 (m, 2H), 6.96 (d, 1H), 6.76 (d, 1H), 5.48 (s, 2H), 5.45-5.35 (m, 1H), 4.92 (s, 2H), 4.49 (td, 1H), 4.32 (dd, 1H), 4.09 (dd, 1H), 4.03-4.92 (m, 2H), 3.90-3.79 (m, 1H), 3.46 (t, 2H), 3.193.00 (m, 1H), 2.76-2.64 (m, 1 H), 2.40-2.18 (m, 5H). MS(ES+): 565.4 (M+H).
10A-72 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid in-1 -y l)methyl]-1 [(3R)-tetrahydrofuran-3ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (CD3OD) δ: 8.35 (s, 1H), 8.03 (d, 1H), 7.81 (d, 1H), 7.67 (t, 1H), 7.52 (t, 1H), 7.24 (t, 2H), 6.94 (d, 1H), 6.74 (d, 1H), 5.46 (s, 2H), 4.83 (br s, 2H), 4.37 (qd, 2H), 4.05 (q, 1 H), 3.95 (br s, 2H), 3.79 (q, 1H), 3.63-3.73 (m, 1H), 3.54 (dd, 1 H), 3.42 (br s, 2H), 3.07 (br s, 1 H), 2.91 (br s, 1H), 2.30 (d, 2H), 2.19-2.26 (m, 2H), 2.09 (td, 1H), 1.79 (td, 1H). MS(ES+): 579.4 (M+H).
147
Ex. # Name NMR data/LC-MS data
10A-73 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}p i per id i n -1 -yl)methy l]-1 [(2S)-tetrahydrofuran-2ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (600 MHz, CD3OD) δ 8.34 (s, 1H), 8.03 (d, 1H), 7.80 (d, 1H), 7.67 (t, 1H), 7.51 (t, 1H), 7.19-7.29 (m, 2H), 6.94 (d, 1H), 6.75 (d, 1H), 5.45 (s, 2H), 4.84 (q, 2H), 4.69 (d, 1H), 4.45 (dd, 1H), 4.16-4.28 (m, 1H), 3.86-3.99 (m, 3H), 3.77 (q, 1H), 3.43 (d, 2H), 3.08 (brs, 1H), 2.16-2.35 (m, 5H), 1.87-2.00 (m, 2H), 1.63-1.74 (m, 1H). MS(ES+): 579.4 (M+H).
10A-74 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -yl)methyl]3-[(2S)-oxetan-2ylmethyl]-3H-imidazo[4,5b]pyridine-5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.21-8.12 (m, 2H), 7.46 (m, 2H), 7.26-7.15 (m, 2H), 6.30 (d, 1H), 6.13 (d, 1H), 5.41-5.26 (m, 3H), 5.06 (dd, 1H), 4.64 (m, 1H), 4.46 (m, 1H), 4.17 (d, 1H), 4.08 (d, 1H), 3.57 (t, 4H), 2.86-2.73 (m, 1H), 2.70 (d, 4H), 2.61-2.49 (m, 1H). MS(ES+): 567.0 (M+H).
1OA-75 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2y Qpiperid in-1 -yl)methyl]-3[(1 -ethyl-1 H-imidazol-5yl)methyl]-3H-imidazo[4,5b]pyridine-5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 9.06 (d, 1H), 8.408.17 (m, 2H), 7.79-7.66 (m, 2H), 7.66-7.57 (m, 2H), 7.48 (d, 1H), 6.96 (d, 1H), 6.81 (d, 1H), 5.90 (s, 2H), 5.58 (s, 2H), 4.86 (s, 2H), 4.55 (q, 2H), 4.10-3.81 (m, 1H), 3.04 (m, 1H), 2.23 (m, 4H), 1.54 (t, 3H). MS(ES+): 595.1 (M+H).
148
Ex. # Name NMR data/LC-MS data
10A-76 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}piperidin-1 -yl)methyl]-3[(1 -methyl-1 H-imidazol-5yl)methyl]-3H-imidazo[4,5b]pyridine-5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.93 (s, 1H), 8.37- 8.13 (m, 2H), 7.78-7.66 (m, 2H), 7.66-7.55 (m, 2H), 7.47 (s, 1H), 6.96 (d, 1H), 6.80 (d, 1H), 5.88 (s, 2H), 5.58 (s, 2H), 4.81 (s, 2H), 4.13 (s, 3H), 3.88 (d, 2H), 3.02 (s, 1H), 2.18 (m, 4H). MS(ES+): 581.1 (M+H).
10A-77 2-[(4-{6-[(4-cyano-2fluorobenzyl)oxy]pyridin-2yl}piperazin-1 -y l)methy I]3-[(2S)-oxetan-2ylmethyl]-3H-imidazo[4,5b]pyridine-5-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.11 (q, 2H), 7.65 (m, 1H), 7.56 (m, 2H), 7.47 (m, 1H), 6.31 (d, 1H), 6.16 (d, 1H), 5.46 (s, 2H), 5.32 (s, 1H), 5.06 (dd, 1H), 4.92 (d, 1H), 4.64 (m, 1H), 4.46 (m, 1H), 4.12 (d, 1H), 4.03 (d, 1H), 3.52 (m, 4H), 2.80 (m, 1H), 2.69-2.46 (m, 5H). MS(ES+): 558.1 (M+H).
10A-78 2-[(4-{6-[(4cyanobenzyl)oxy]pyridin2-yl}piperidin-1 -y l)methy I]1-[(2S)-oxetan-2ylmethyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.34 (d, 1H), 8.00 (dd, 1.4 Hz, 1H), 7.78-7.67 (m, 3H), 7.67-7.52 (m, 3H), 6.86 (d, 1H), 6.70 (d, 1H), 5.49 (s, 2H), 5.33-5.21 (m, 1H), 4.86 (m, 1H), 4.74 (m, 1H), 4.69-4.57 (m, 1H), 4.48 (m, 1H), 4.21-3.97 (m, 2H), 3.13 (m, 2H), 2.89-2.77 (m, 1H), 2.69 (m, 1H), 2.60-2.40 (m, 3H), 1.89 (m, 4H). MS(ES+): 538.3 (M+H).
149
Ex. # Name NMR data/LC-MS data
10A-79 2-[(4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2y l}piperid i n-1 -yl)methyl]-1 - [(1-methylazetidin-2yl)methyl]-1 Hbenzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ: 8.30 (s, 1H), 8.00 (d, 1H), 7.68 (d, 1H), 7.56-7.64 (m, 1H), 7.48 (t, 1H), 7.16-7.28 (m, 2H), 6.86 (d, 1H), 6.67 (d, 1H), 5.41 (s, 2H), 4.77 (d, 2H), 4.27 (t, 1H), 4.06 (d, 2H), 3.82 (td, 1H), 3.33-3.43 (m, 1H), 3.19 (d, 2H), 2.71-2.85 (m, 1H), 2.47-2.57 (m, 1H), 2.43 (s, 3H), 2.34-2.41 (m, 1H), 2.18-2.30 (m, 1H), 1.80-2.01 (m, 4H). MS(ES+): 578.0 (M+H).
The compounds listed in Table 6 below were prepared by parallel synthesis using procedures analogous to those described above for the synthesis of Examples 10A-01 using the appropriate starting materials which are available commercially, prepared using 5 préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using HPLC. Due to the purifaction solvent, the final compounds isolated using methods PFAB01 and PF-AB10 were likely trifluoroacetate salts, while compounds isolated using method PF-CD05 are likely ammonium salts.
150
Table 6
Ex. # Name *MW found Ret. time (min) **Method
11A-01 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i perid i n -1 -y l)methy l]-1 -[2-( 1 -methyl-1 Himidazol-4-yl)ethyl]-1 H-benzimidazole-6carboxylic acid 603 2.716 PF-AB01
11A-02 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -y l)methy l]-1 -[(5-chloropyridin2-yl)methyl]-1H-benzimidazole-6-carboxylic acid 620 2.637 PF-CD05
11A-03 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -[(1 ethylpyrrolidin-3-yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 606 2.568 PF-AB10
11A-04 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -[(1 methylpiperidin-3-yl)methyl]-1Hbenzimidazole-6-carboxylic acid 606 2.549 PF-AB10
11A-05 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[2-(tetrahydro2H-pyran-2-yl)ethyl]-1H-benzimidazole-6carboxylic acid 607 2.962 PF-AB10
11A-06 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid in-1 -yl)methyl]-1 -{[3-(propan-2-yl)- 1,2-oxazol-5-yl]methyl}-1 H-benzimidazole-6carboxylic acid 618 3.041 PF-AB10
I5l
Ex. # Name *MW found Ret. time (min) **Method
11A-07 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid in-1 -y l)methy l]-1 -[2-( 1 methyl piperid in-4-y l)ethyl]-1 Hbenzimidazole-6-carboxylic acid 620 2.602 PF-AB10
11A-08 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n -1 -y l)methy l]-1 -[(1 methylpiperidin-4-yl)methyl]-1Hbenzimidazole-6-carboxylic acid 606 2.559 PF-AB10
11A-09 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -y l)methy l]-1 -[2-(1 methylpyrrolidin-2-yl)ethyl]-1 Hbenzimidazole-6-carboxylic acid 606 2.369 PF-AB10
11A-10 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y !}p i pe rid i n-1 -yl)methyl]-1 -[(1 methylpiperidin-2-yl)methyl]-1Hbenzimidazole-6-carboxylic acid 606 2.56 PF-AB10
11A-11 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n -1 -yl)methyl]-1 -[2-(4methylmorpholin-2-yl)ethyl]-1 Hbenzimidazole-6-carboxylic acid 622 2.333 PF-AB10
11A-12 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y IJpiperid in-1 -y l)methy l]-1 -{[1 -(2methoxyethyl)piperidin-4-yl]methyl}-1Hbenzimidazole-6-carboxylic acid 650 2.552 PF-AB10
152
Ex. # Name ‘MW found Ret. time (min) **Method
11A-13 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methyl]-1 -{[1 -(2methoxyethyl)piperidin-3-yl]methyl}-1 Hbenzimidazole-6-carboxylic acid 650 2.572 PF-AB10
11A-14 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -yl)methyl]-1 -[(3methyltetrahydrofuran-3-yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 593 2.901 PF-AB10
11A-15 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid in-1 -y l)methy l]-1 -(1 H-pyrazol-4ylmethyl)-1H-benzimidazole-6-carboxylic acid 575 2.37 PF-CD05
11A-16 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y Ijpiperid i n-1 -y l)methy l]-1 (cyclobutylmethyl)-l H-benzimidazole-6carboxylic acid 563 3.029 PF-AB10
11A-17 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[2-(1 H-1,2,4triazol-1-yl)ethyl]-1H-benzimidazole-6carboxylic acid 590 2.926 PF-AB01
11A-18 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i perid i n -1 -yl)methyl]-1 -(2-ethoxypropyl)- 1 H-benzimidazole-6-carboxylic acid 581 2.831 PF-AB10
153
Ex. # Name *MW found Ret. time (min) **Method
11A-19 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperidin-1 -y l)methy l]-1 -{[4-(2- methoxyethyl)-4H-1,2,4-triazol-3-yl]methyl}- 1 H-benzimidazole-6-carboxylic acid 634 2.368 PF-CD05
11A-20 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperid in-1 -y l)methyl]-1 -[2-(2-oxo-1,3oxazolidin-3-yl)ethyl]-1 H-benzimidazole-6carboxylic acid 608 2.382 PF-CD05
11A-21 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[(1 -methyl-1 Hpyrazol-5-yl)methyl]-1 H-benzimidazole-6carboxylic acid 589 3.002 PF-AB01
11A-22 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -y I ) methyl]-1 -(2-methoxy-2methylpropyl)-1 H-benzimidazole-6-carboxylic acid 581 3.003 PF-AB10
11A-23 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-(1 H-1,2,3-triazol- 4-ylmethyl)-1 H-benzimidazole-6-carboxylic acid 576 2.236 PF-CD05
11A-24 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -(1 H-pyrazol-3ylmethyl)-1H-benzimidazole-6-carboxylic acid 575 2.409 PF-CD05
154
Ex. # Name ‘MW found Ret. time (min) **Method
11A-25 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid in-1 -yl)methyl]-1 -(4H-1,2,4-triazol3-ylmethyl)-1 H-benzimidazole-6-carboxylic acid 576 2.302 PF-CD05
11A-26 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-(tetrahydrofuran- 3-yl)-1 H-benzimidazole-6-carboxylic acid 565 2.829 PF-AB01
11A-27 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n-1 -yl)methyl]-1 -(2,2difluoropropyl)-1 H-benzimidazole-6carboxylic acid 573 2.773 PF-AB10
11A-28 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y IJpiperid in-1 -y l)methyl]-1 -[2-(1 H-pyrazol-1 yI)ethyI]-1 H-benzimidazole-6-carboxylic acid 589 2.862 PF-AB01
11A-29 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i perid i n -1 -y I ) m ethy I]-1 -[2-(3-methyl- 1,2,4-oxadiazol-5-yl)ethyl]-1 Hbenzimidazole-6-carboxylic acid 605 3.069 PF-AB01
11A-30 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[2-(2-oxo-1,3oxazinan-3-yl)ethyl]-1H-benzimidazole-6carboxylic acid 622 2.779 PF-AB10
155
Ex. # Name *MW found Ret. time (min) **Method
11A-31 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methy l]-1 -[2-(3-methyl-1 Hpyrazol-1 -y l)ethy I]-1 H-benzimidazole-6carboxylic acid 603 2.899 PF-AB10
11A-32 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methyl]-1 -[2-(1 -methyl-1 Hpyrazol-4-yl)ethyl]-1 H-benzimidazole-6carboxylic acid 603 3.001 PF-AB01
11A-33 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[(1 -methyl-1 H- 1,2,4-triazol-5-yl)methyl]-1 H-benzimidazole- 6-carboxylic acid 590 2.986 PF-AB01
11A-34 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}pi peridi n-1 -yl)methyl]-1 -{[(2R)-1 methylpyrrolidin-2-yl]methyl}-1 Hbenzimidazole-6-carboxylic acid 592 2.397 PF-AB10
11A-35 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y Ijpiperid i n-1 -y l)methy l]-1 -[(5-methyl-1,2oxazol-3-yl)methyl]-1H-benzimidazole-6carboxylic acid 590 2.94 PF-AB01
11A-36 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1-[(1 -methyl-1 H- 1,2,3-triazol-4-yl)methyl]-1 H-benzimidazole- 6-carboxylic acid 590 2.84 PF-AB01
156
Ex. # Name ‘MW found Ret. time (min) **Method
11A-37 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n -1 -yl)methyl]-1 -(1 H-imidazol-5ylmethyl)-1H-benzimidazole-6-carboxylic acid 575 2.354 PF-CD05
11A-38 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid in-1 -y l)methy l]-1 -(3methoxypropyl)-1H-benzimidazole-6carboxylic acid 567 2.703 PF-AB10
11A-39 2-[(4-{6-[(4-chloro-2-fluorobenzyi)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -[(1 -ethyl-1 Himidazol-2-yl)methyl]-1H-benzimidazole-6carboxylic acid 603 2.455 PF-CD05
11A-40 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid in-1 -yl)methy l]-1 -(tetrahydro-2Hpyran-3-ylmethyl)-1H-benzimidazole-6carboxylic acid 593 2.907 PF-AB10
11A-41 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methyl]-1 -[2-( 1 H-imidazol4-yl)ethyl]-1 H-benzimidazole-6-carboxylic acid 589 2.695 PF-AB01
11A-42 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -[(1 -methyl-5- oxopyrrolidin-3-yl)methyl]-1H-benzimidazole- 6-carboxylic acid 606 2.974 PF-AB01
157
Ex. # Name *MW found Ret. time (min) **Method
11A-43 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[(1 -methyl-1 Hpyrazol-4-yl)methyl]-1 H-benzimidazole-6carboxylic acid 589 2.808 PF-AB01
11A-44 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y IJpiperid i n-1 -y l)methyl]-1 -[2-(1 -methyl-1 H- 1,2,3-triazol-4-yl)ethy I]-1 H-benzimidazole-6carboxylic acid 604 2.801 PF-AB01
11A-45 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n-1 -yl)methyl]-1 -[(2S)-1 methoxypropan-2-yl]-1 H-benzimidazole-6carboxylic acid 567 2.721 PF-AB10
11A-46 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -y l)methyl]-1 -[(2R)-1 methoxypropan-2-yl]-1 H-benzimidazole-6carboxylic acid 567 2.723 PF-AB10
11A-47 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperid i n-1 -y l)methyl]-1 -[(3-methyl-1,2oxazol-5-yl)methyl]-1 H-benzimidazole-6carboxylic acid 590 2.481 PF-CD05
11A-48 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n-1 -yl)methyl]-1 -(tetrahydro-2Hpyran-2-ylmethyl)-1H-benzimidazole-6carboxylic acid 590 2.481 PF-CD05
158
Ex. # Name *MW found Ret. time (min) **Method
11A-49 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i perid i n-1 -yl)methyl]-1 -(tetrahydro-2Hpyran-4-ylmethyl)-1 H-benzimidazole-6carboxylic acid 593 2.87 PF-AB10
11A-50 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y Qpiperid in-1 -y l)methy l]-1 -[2-(morpholin-4yl)ethy l]-1 H-benzimidazole-6-carboxylic acid 608 2.775 PF-AB01
11A-51 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -yl)methyl]-1 -[(3,3difluorocyclobutyl)methyl]-1 H-benzimidazole6-carboxylic acid 599 2.853 PF-AB10
11A-52 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperidi n-1 -yl)methyl]-1 -[1 -(4-methyl-4H- 1,2,4-triazol-3-yl)ethy l]-1 H-benzimidazole-6carboxylic acid 604 2.964 PF-AB01
11A-53 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -yl)methyl]-1 -[2-(4-methyl-4H- 1,2,4-triazol-3-y l)ethy l]-1 H-benzimidazole-6carboxylic acid 604 2.762 PF-AB01
11 A-54 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}pi perid i n-1 -y l)methyl]-1 -{[(2R)-1 ethylpyrrolidin-2-yl]methyl}-1 Hbenzimidazole-6-carboxylic acid 606 2.599 PF-AB10
159
Ex. # Name *MW found Ret. time (min) **Method
11A-55 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n-1 -yl)methyl]-1 -[(2,5-dimethyl- 1,3-oxazol-4-yl)methyl]-1 H-benzimidazole-6carboxylic acid 604 2.492 PF-CD05
11A-56 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y !}pi pe rid i n-1 -y I )methy I]-1 -[2-(4methoxypiperidin-1 -y l)ethy l]-1 Hbenzimidazole-6-carboxylic acid 636 2.742 PF-AB01
11A-57 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperid i n-1 -yl) methy l]-1 -[2-(3,5-dimethyl- 1 H-pyrazol-1 -y l)ethy I]-1 H-benzimidazole-6carboxylic acid 617 2.934 PF-AB10
11A-58 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i perid i n -1 -y I ) methy I]-1 -[(3-methyl-1 Hpyrazol-5-yl)methyl]-1 H-benzimidazole-6carboxylic acid 589 2.428 PF-CD05
11A-59 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n -1 -y I ) methy I]-1 -[(3-methyl-1 H- 1,2,4-triazol-5-yl)methy l]-1 H-benzimidazole- 6-carboxylic acid 590 2.347 PF-CD05
11A-60 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -y l)methy l]-1 -[1 -(2-methyl-2H- 1,2,3-triazol-4-yl)ethy l]-1 H-benzimidazole-6carboxylic acid 604 2.471 PF-CD05
160
Ex. # Name ‘MW found Ret. time (min) **Method
11A-61 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}piperid i n-1 -y l)methy I]-1 -[(6methylpyridin-3-yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 600 2.583 PF-AB10
11A-62 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1 -{[3- (methoxymethyl)-l H-pyrazol-5-yl]methyl}-1 Hbenzimidazole-6-carboxylic acid 619 2.413 PF-CD05
11A-63 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin2-yl}piperidin-1 -y l)methy I]-1 -[(4methylmorpholin-2-yl)methyl]-1Hbenzimidazole-6-carboxylic acid 608 2.745 PF-AB01
11A-64 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n-1 -y I ) m ethy I]-1 -[(5-cyclopropyl1H-1,2,4-triazol-3-yl)methyl]-1 Hbenzimidazole-6-carboxylic acid 616 2.401 PF-CD05
11A-65 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -y I ) m ethy I]-1 -[2-(tetrahydro2H-pyran-4-yl)ethyl]-1H-benzimidazole-6carboxylic acid 607 2.912 PF-AB10
11A-66 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidi n-1 -yl)methyl]-1 -[2-(3-methyl-1 H- 1,2,4-triazol-5-yl)ethyl]-1 H-benzimidazole-6- carboxylic acid 604 2.305 PF-CD05
I6l
Ex. # Name *MW found Ret. time (min) **Method
11A-67 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y IJpiperid i n-1 -yl)methyl]-1 -[1 -(5-methyl-1 H- 1,2,4-triazol-3-yl)ethyl]-1 H-benzimidazole-6carboxylic acid 604 2.379 PF-CD05
11A-68 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}p i pe rid i n-1 -y I )methy I]-1 -[(2R)tetrahydrofuran-2-ylmethyl]-1 Hbenzimidazole-6-carboxylic acid 579 2.924 PF-AB10
11A-69 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-(1,2-oxazol-3ylmethyl)-1H-benzimidazole-6-carboxylic acid 576 2.465 PF-CD05
11A-70 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1-yl)methyl]-1-[(1-methyl-1 Himidazol-5-yl)methyl]-1 H-benzimidazole-6carboxylic acid 589 2.378 PF-CD05
11A-71 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-y l}pi perid i n -1 -y l)methy l]-1 -[(4-methyl-4H- 1,2,4-triazol-3-yl)methyl]-1 H-benzimidazole- 6-carboxylic acid 590 2.73 PF-AB01
11A-72 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidin-1 -yl)methyl]-1-[(1 -methyl-1 H- 1,2,3-triazol-5-yl)methy l]-1 H-benzimidazole- 6-carboxylic acid 590 2.381 PF-CD05
162
Ex. # Name ‘MW found Ret. time (min) **Method
11A-73 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin- 2-yl}piperidi n-1 -y l)methyl]-1 -(3,3,3trifluoropropyl)-1H-benzimidazole-6carboxylic acid 591 2.811 PF-AB10
11A-74 2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin2-yl}piperidin-1 -y I ) methyl]-1 -{[1 (methoxymethyl)cyclobutyl]methyl}-1 Hbenzimidazole-6-carboxylic acid 607 2.757 PF-AB10
*MW found: MS(ES+): as (M+H) **HPLC purification method PF-AB01: Mobile Phase A: 0.0375% TFA in H2O. Mobile Phase B: 0.01875% TFA in MeCN. Initial conditions: B: 1%, A: 99%. Gradient: B: 1%, A:
99% to B: 5%, A: 95% from t = 0.00 min to 0.60 min, then to B: 100% from t = 0.60 min to 4.00 min, then to B: 1%, A: 99% from t = 4.00 min to 4.30 min, hold until t = 4.70 min. Flow rate = 0.8 mL/min, 2 μΙ_ injection volume **HPLC purification method PF-AB10: Mobile Phase A: 0.0375% TFA in H2O. Mobile Phase B: 0.01875% TFA in MeCN. Initial conditions: B: 10%, A: 90%. Gradient: B: 10%,
A: 90% from t = 0.00 min to 0.50 min, then to B: 100% from t = 0.60 min to 4.00 min, then to B: 10%, A: 90% from t = 4.00 min to 4.30 min, hold until t = 4.70 min. Flow rate = 0.8 mL/min, 2 μ!_ injection volume **HPLC purification method PF-CD05: Mobile Phase A: 0.05% NH4OH in H2O. Mobile Phase B: 100% MeCN. Initial conditions: B: 5%, A: 95%. Gradient: B: 5%, A: 95% to B:
100%, from t = 0.50 min to 3.40 min, hold until t = 4.20 min then to B: 5%, A: 95% from t = 4.21 min to 4.70 min, hold until t = 4.70 min. Flow rate = 0.8 mL/min, 2 μΙ_ injection volume
163 '0
Example 12A-01
2-((4-(6-((4-Chloro-2-fluorobenzyl)oxy)pyridin-2-yl)-2-(trifluoromethyl)piperazin-1yl)methyl)-1-(2-methoxyethyl)-1 H-benzo[d]imidazole-6-carboxylic acid, enantiomer 1
Example 12A-02
2-((4-(6-((4-Ohloro-2-fluorobenzyl)oxy)pyridin-2-yl)-2-(trifluoromethyl)piperazin-1yl)methyl)-1-(2-methoxyethyl)-1 H-benzo[d]imidazole-6-carboxylic acid, enantiomer 2
Step 1
To a solution of 4-chloro-2-fluorobenzyl alcohol (15.0 g, 93.4 mmol) in DMF (250 mL) was added NaH (4.48 g, 112 mmol, 60% susp.) at 0 °C. After stirring at 15 °C for 40 min, 2,6-dichloropyridine (16.6 g, 112 mmol) was added. The resulting mixture was stirred at 15 °C for 3 h. The mixture was poured into water (1 L) and extracted with EtOAc (2 x
200 mL). The combined organic layers were washed with sat. NFUCI (500 mL), brine (500 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude product was purified by flash chromatography (PE) to give 2-chloro-6-((4-chloro-2fluorobenzyl)oxy)pyridine (19.2 g, 75%) as a solid. 1H NMR (CDCh) δ 7.55 (t, 1H), 7.47 (t, 1H), 7.15 (t, 2H), 6.94 (d, 1H), 6.71 (d, 1H), 5.40 (s, 2H).
Step 2
To a solution of tert-butyl 3-(trifluoromethyl)piperazine-1 -carboxylate (100 mg,
0.393 mmol) in MeCN (2 mL) was added Intermediate 19 (111 mg, 0.393 mmol), tetrabutylammonium iodide (145 mg, 0.39 mmol) and Ν,Ν-diisopropylethyl amine (152 mg, 1.18 mmol). The reaction mixture was stirred at 150 °C for 1 h under microwave conditions. The reaction mixture was concentrated under reduced pressure and purified by prep-TLC (33% EtOAc/PE) to deliver methyl 2-((4-(tert-butoxycarbonyl)-225 (trifluoromethyl)piperazin-l -yl)methyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate (100 mg, 51%) as yellow oil. MS(ES+): 501.1 (M+H).
Step 3
164
To a solution of methyl 2-((4-(tert-butoxycarbonyl)-2-(trifluoromethyl)piperazin-1yl)methyl)-1-(2-methoxyethyl)-1H-benzo[d]imidazole-6-carboxylate (100 mg, 0.2 mmol) in EtOAc (5 mL) was added HCI-EtOAc (5 mL). The reaction mixture was stirred at RT for 2 h. The reaction mixture was concentrated under reduced pressure. The crude product was dissolved in DCM (10 mL), washed with sat. aq K2CO3, dried over Na2SO4, filtered and concentrated under reduced pressure to give methyl 1-(2-methoxyethyl)-2-((2(trifluoromethyl)piperazin-1-yl)methyl)-1 H-benzo[d]imidazole-6-carboxylate (42 mg, 53%) as yellow oil. MS(ES+): 401.0 (M+H).
Step 4
To a solution of methyl 1-(2-methoxyethyl)-2-((2-(trifluoromethyl)piperazin-1yl)methyl)-1 H-benzo[d]imidazole-6-carboxylate (90 mg, 0.22 mmol) in PhCHs (2 mL) was added 2-chloro-6-((4-chloro-2-fluorobenzyl)oxy)pyridine (61.2 mg, 0.225 mmol), Pd2(dba)3 (20.6 mg, 0.1 mmol), BINAP (28 mg, 0.045 mmol) and CS2CO3 (220 mg, 0.674 mmol). The reaction mixture was stirred at 100 °C for 16 h. The reaction mixture was concentrated under reduced pressure and the crude product purified by préparative TLC (33% EtOAc/PE) to give the racemic product as a yellow oil. The racematic mixture was separated by préparative chiral SFC (Column: Whelk-01 250 x 30 mm x 10 pm; Mobile phase: 45% isopropanol (1% NH4OH) / CO2 Flow rate: 50 mL/min) to deliver the separated enantiomers of methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2-yl)-2(trifluoromethyl)piperazin-l -yl)methyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate:
Enantiomer 1: (28 mg, 20%); rétention time (15.98 min);
Enantiomer 2: (33 mg, 23%); rétention time (20.92 min).
Step 5
To a solution of Step 4 Enantiomer 1 (28 mg, 0.044 mmol) in MeOH (5 mL) was added 2 M NaOH (1 mL). The reaction mixture was stirred at 50 °C for 2 h. The reaction mixture was cooled to 0 °C and acidified with 1 M HCl to pH ~4. The reaction mixture was extracted by EtOAc (3 x 10 mL), dried over Na2SO4, concentrated under reduced pressure. The crude product was purified by préparative HPLC (Column: Waters Xbridge Prep OBD C18 150 x 30 mm x 5 pm; Mobile phase: from 55% MeOH in water [0.1% TFA] to 75% MeOH in water [0.1% TFA]; 10 min gradient; Wavelength: 220 nm; Flow rate: 25 ml/min) to deliver Example 12A-01 (12.2 mg, 37%) as a solid. Due to the purification
165 solvent, the compound was likely isolated as the trifluoroacetate sait. Analytical LC-MS data: Xtimate C18 5 x 30 mm, 3 pm; Mobile phase: 1% MeCN in water (0.1% TFA) to 5% MeCN in water (0.1% TFA) in 1 min; then from 5% MeCN in water (0.1% TFA) to 100% MeCN (0.1% TFA) in 5 min; hold at 100% MeCN (0.1% TFA) for 2 min; back to 1.0% MeCN in water (0.1% TFA) at 8.01 min, and hold 2 min. Flow rate: 1.2 ml/min; Rétention time 4.465 min, MS(ES+): 622.2 (M+H).
Example 12A-02 was prepared in a similar manner from Step 4, Enantiomer 2 (33 mg, 0.052 mmol) and purified using the same préparative HPLC method to deliver Example 12A-02 (9.8 mg, 28%) as a solid. Due to the purification solvent, the compound was likely isolated as the trifluoroacetate sait. Analytical LC-MS data: Rétention time 4.469 min, MS(ES+): 622.2 (M+H).
The compounds listed in Table 7 below were prepared using procedures analogous to those described above for the synthesis of Examples 12A-01 and 12A-02 using the appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The compounds were purified using methods well known to those skilled in the art and may include silica gel chromatography, HPLC, or crystallization from the reaction mixture. The final compounds may hâve been isolated as neutrals or acid or base salts.
166
Table 7
Ex. # Name NMR data/LC-MS data
12A-03 2-[(7-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}4,7-diazaspiro[2.5]oct-4y l)methy I]-1 -(2-methoxyethyl)- 1 H-benzimidazole-6- carboxylic acid 1H NMR (400 MHz, CD3CN) δ 8.48 (s, 1H), 8.20 (dd, 1H), 7.89 (d, 1H), 7.49 (m, 2H), 7.24 (m, 2H), 6.29 (d, 1H), 6.15 (d, 1H), 5.37 (s, 2H), 4.60 (m, 4H), 3.77 (m, 2H), 3.71-3.42 (m, 4H), 3.28 (s, 3H), 3.12 (t, 2H), 0.87 (d, 2H), 0.67 (t, 2H). MS(ES+): 580.0 (M+H).
12A-04 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-cyclopropylpiperazin-1 yl]methyl}-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.13 (dd, 1H), 7.82 (d, 1H), 7.53 (t, 1H), 7.45 (t, 1H), 7.15-7.25 (m, 2H), 6.41 (d, 1H), 6.23 (d, 1H), 5.38 (d, 2H), 5.29 (d, 1H), 4.64-4.80 (m, 2H), 4.53 (d, 1H), 4.32 (d, 1H), 4.11 (d, 1H), 3.79 (t, 2H), 3.54 (d, 1H), 3.36-3.49 (m, 2H), 3.08 (t, 1H), 2.61 (br s, 1H), 0.98-1.10 (m, 1H), 0.73-0.89 (m, 2H), 0.57-0.72 (m, 1H), 0.37-0.50 (m, 1H). MS(ES+): 594.0 (M+H).
12A-05 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-(propan-2-yl)piperazin-1 y I] methy l}-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.44 (d, 1 H), 8.15 (dd, 1H), 7.84 (d, 1H), 7.55 (m, 1H), 7.45 (m, 1H), 7.27-7.15 (m, 2H), 6.40 (d, 1H), 6.24 (d, 1H), 5.46-5.35 (m, 2H), 4.99 (m, 1H), 4.71 (m, 2H), 4.51 (m, 1H), 4.32 (m, 1H), 4.06 (m, 1H), 3.80 (m, 2H), 3.48-3.37 (m, 3H), 3.31 (s, 3H), 3.17 (d, 2H), 2.41-2.28 (m, 1H), 1.16 (d, 3H), 1.09 (d, 3H). MS(ES+): 596.3 (M+H).
I67
Ex. # Name NMR data/LC-MS data
12A-06 2-[(4-{6-[(4-chloro-2- fluorobenzyl)oxy]pyridin-2-yl}- 2,2-dimethylpiperazin-1yl)methyl]-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.46 (d, 1H), 8.17 (dd, 1H), 7.86 (d, 1H), 7.49 (m, 2H), 7.28-7.18 (m, 2H), 6.40 (d, 1H), 6.20 (d, 1H), 5.38 (s, 2H), 4.72 (m, 2H), 4.62 (m, 2H), 3.87- 3.62 (m, 6H), 1.41 (s, 6H). MS(ES+): 582.3 (M+H).
12A-07 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-ethylpiperazin-1 -yljmethyl}1-(2-methoxyethyl)-1 Hbenzimidazole-6-carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.40 (s, 1H), 8.11 (dd, 1 H), 7.81 (d, 1 H), 7.53 (t, 1 H), 7.44 (t, 1H), 7.14-7.25 (m, 2H), 6.41 (d, 1H), 6.23 (d, 1H), 5.38 (s, 2H), 4.56-4.74 (m, 3H), 4.07 (d, 1H), 3.91 (d, 1H), 3.78 (t, 2H), 3.49-3.73 (m, 3H), 3.37 (br s, 1H), 1.93 (brs, 1H), 1.711.84 (m, 1 H), 1.08 (t, 3H). MS(ES+): 582.1 (M+H).
12A-08 2-{[(2S)-4-{6-[(4- cyanobenzyl)oxy]pyridin-2-yl}- 2-methylpiperazin-1- y I] methy I}-1 -(2-methoxyethyl)- 1 H-benzimidazole-6- carboxylic acid 1H NMR (400 MHz, CD3OD) δ 8.42 (d, 1H), 8.12 (dd, 1H), 7.82 (d, 1H), 7.71 (d, 2H), 7.62- 7.51 (m, 3H), 6.42 (d, 1H), 6.29 (d, 1H), 5.44 (s, 2H), 4.68 (q, 2H), 4.53 (m, 1H), 4.07 (m, 2H), 3.79 (m, 2H), 3.30 (s, 3H), 3.18 (m, 1H), 1.40 (d, 3H). MS(ES+): 541.0 (M+H).
12A-09 2-{[(2R)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-(hydroxymethyl)piperazin-1 y I] methy I}-1 -(2-methoxyethyl)- 1 H-benzimidazole-6carboxylic acid 1H NMR (CD3OD) δ 8.41 (s, 1H), 8.10 (d, 1H), 7.80 (d, 1H), 7.51 (t, 1 H), 7.45 (t, 1H), 7.13- 7.25 (m, 2H), 6.39 (d, 1H), 6.20 (d, 1H), 5.36 (s, 2H), 5.02 (d, 2H), 4.66-4.81 (m, 2H), 4.49 (d, 1H), 4.20 (d, 1H), 4.10 (d, 1H), 4.00 (d, 1H), 3.69-3.92 (m, 4H), 3.38 (brs, 2H), 3.09- 3.26 (m, 2H), 1.32 (t, 2H). MS(ES+): 584.2 (M+H).
168
Ex. # Name NMR data/LC-MS data
12A-10 2-{[(2S)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-methylpiperazin-1 y l]methy l}-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid Column: AD-H 4.6 x 100 mm, 5 pm; Mobile phase A: CO2; Mobile phase B:Methanol with 0.2% NH4OH; 60:40 A/B Hold for 5 min, Column Temp: 40 °C, Back Pressure: 120 Bar, Flow: 1.5 mL/min. Rétention time: 3.035. MS(ES+): 568.3 (M+H).
12A-11 2-{[(2R)-4-{6-[(4-chloro-2fluorobenzyl)oxy]pyridin-2-yl}2-methylpiperazin-1yl]methyl}-1 -(2-methoxyethyl)1 H-benzimidazole-6carboxylic acid Column: AD-H 4.6 x 100 mm, 5 pm; Mobile phase A: CO2; Mobile phase B:Methanol with 0.2% NH4OH; 60:40 A/B Hold for 5 min, Column Temp: 40 °C, Back Pressure: 120 Bar, Flow: 1.5 mL/min. Rétention time: 3.035. MS(ES+): 568.3 (M+H).
Examples 13A-01 and 13A-02 trans 2-{[4-{6-[(4-Chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperidin-1-yl]methyl}5 1-(2-methoxyethyl)-1H-benzimidazole-6-carboxylic acid, enantiomers 1 and 2 Examples 13A-03 and 13A-04 cis 2-{[4-{6-[(4-Chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperidin-1 -y l]methy l}-1 (2-methoxyethyl)-1H-benzimidazole-6-carboxylic acid, enantiomers 1 and 2
Step 1
A mixture of 2-[(4-chloro-2-fluorobenzyl)oxy]-6-(2-methylpiperidin-4-yl)pyridine (350 mg, 0.86 mmol) [prepared as a mixture of stereoisomers via a route similar to that used for Intermediate 3], Intermediate 19 (220 mg, 0.78 mmol) and K2CO3 (540 mg, 3.9 mmol) in MeCN (6 mL) was stirred at 60 °C for 16 h. The mixture was filtered and the
169 filtrate concentrated under reduced pressure. The residue was purified using column chromatography eluting with EtOAc/ΡΕ (1:1) to obtain methyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylate (250 mg, 55%,yellow oil) as a mixture of four stereoisomers. The mixture of stereoisomers was separated by SFC on a chiral column using condition 1 below to afford clean peaks 1, 3 and 4, along with peak 2 that was not pure. Peak 2 was repurified by SFC using condition 2. The rétention fîmes indicated refer to SFC condition 1. The relative stereochemistry was assigned by 2D NMR. The absolute configuration of each isomer was not assigned.
Peak 1 (rétention time 5.6 min): trans methyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylate enantiomer 1.
Peak 2 (rétention time 5.8 min): trans methyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylate enantiomer 2.
Peak 3 (rétention time 6.4 min): cis methyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylate enantiomer 1.
Peak 4 (rétention time 6.9 min): cis methyl 2-((4-(6-((4-chloro-2fluorobenzyl)oxy)pyridin-2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 Hbenzo[d]imidazole-6-carboxylate enantiomer 2.
SFC condition 1: Column: AD (250 mm x 30 mm, 5 pm); Mobile phase: CO2 w/ 35% EtOH (0.1% NH4OH); Flow rate: 70 ml/min; Wavelength: 220 nm.
SFC condition 2: Column: AD (250 mm x 30 mm, 5 pm); Mobile phase: CO2 w/ 40% iPrOH (0.1% NH4OH); Flow rate: 60 ml/min; Wavelength: 220 nm
Step 2
The methyl esters from Step 1 were converted to the free acids by treatment with NaOH in MeOH as described previously to afford the four title examples.
Example 13A-01 (from trans methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin2-y l)-2-methy Ipiperid i n-1 -yl)methyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate enantiomer 1): 1H NMR (400 MHz, CD3OD) δ: 8.32 (d, 1H), 8.01 (dd, 1H), 7.77 (d, 1H), 7.68 (dd, 1H), 7.49 (t, 1H), 7.17-7.31 (m, 2H), 6.97 (d, 1H), 6.76 (d, 1H),
170
5.37-5.50 (m, 2H), 4.75-4.86 (m, 2H), 4.62 (t, 2H), 4.19 (br s, 1H), 3.76 (t, 2H), 3.66 (d,
1H), 2.49 (ddd, 1H), 2.30 (m, 1H), 2.16-2.24 (m, 1H), 2.10 (dt, 1H), 1.62 (d, 2H); LCMS(ES+): 567.1 (M+H).
Example 13A-02 (from trans methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin2-yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate enantiomer 2): 1H NMR (400 MHz, CD3OD) δ 8.31 (d, 1H), 8.00 (dd, 1H), 7.76 (d, 1H), 7.67 (dd, 1H), 7.48 (t, 1H), 7.22 (m, 2H), 6.96 (d, 1H), 6.75 (d, 1H), 5.475.38 (m, 2H), 4.80 (m, 1H), 4.61 (m, 2H), 4.18 (m, 1H), 3.80-3.59 (m, 3H), 2.48 (m, 1H), 2.29 (m, 1H), 2.19 (m, 1H), 2.09 (m, 1H), 1.61 (d, 3H); LC-MS(ES+): 567.1 (M+H).
Example 13A-03 (from cis methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)-2-methylpiperidin-1-yl)methyl)-1-(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate enantiomer 1): 1H NMR (400 MHz, CD3OD) δ 8.34 (d, 1H), 8.05 (dd, 1H), 7.81 (d, 1H), 7.73-7.64 (m, 1H), 7.53 (m, 1H), 7.26 (m, 2H), 6.94 (d, 1 H), 6.76 (d, 1H), 5.48 (s, 2H), 5.12 (d, 1H), 4.77 (d, 1H), 4.64 (m, 2H), 4.01-3.82 (m, 2H), 3.78 (m, 2H), 3.52-3.42 (m, 1H), 3.15 (m, 1H), 2.35-2.05 (m, 4H), 1.57 (d, 3H); LC-MS(ES+): 567.1 (M+H).
Example 13A-04 (from c/s methyl 2-((4-(6-((4-chloro-2-fluorobenzyl)oxy)pyridin-2yl)-2-methylpiperidin-1 -yl)methyl)-1 -(2-methoxyethyl)-1 H-benzo[d]imidazole-6carboxylate enantiomer 2): 1H NMR (400 MHz, CD3OD) δ 8.34 (d, 1H), 8.05 (dd, 1H), 7.81 (d, 1H), 7.70-7.64 (m, 1H), 7.53 (t, 1H), 7.26 (m, 2H), 6.94 (d, 1H), 6.76 (d, 1H), 5.48 (s, 2H), 5.12 (d, 1H), 4.77 (d, 1H), 4.64 (t, 2H), 3.99-3.83 (m, 2H), 3.78 (t, 2H), 3.52-3.42 (m, 1H), 3.19-3.09 (m, 1H), 2.31-2.05 (m, 4H), 1.57 (d, 3H); LC-MS(ES+): 567.1 (M+H).
The methyl esters of the compounds listed in Table 8 below were prepared using procedures analogous to those described above for the synthesis of Examples 10A-01 using racemic 2-aminomethyltetrahydrofuran or 3-aminomethyltetrahydrofuran and other appropriate starting materials which are available commercially, prepared using préparations well-known to those skilled in the art, or prepared in a manner analogous to routes decribed above for other intermediates. The THF stereoisomers were separated by SFC to give the ester intermediates as single stereoiosomers. The methyl esters were then hydrolyzed as described for example 10A-01 to provide the compounds listed in Table 8. Rétention times and chromatography methods for the methyl ester intermediates
171 are shown in the table.
was not assignée!.
The stereochemistry of the THF stereocenter in each compound
172
Table 8
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-01 2-[(4-{6-[(4cyanobenzyl)oxy ]pyridin-2yl}piperidin-1 yl)methyl]-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, enantiomer 1 A 0.65 1H NMR (400 MHz, CDsOD) δ 8.36 (d, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.777.73 (m, 2H), 7.69 (dd, 1H), 7.66-7.60 (m, 2H), 6.95 (d, 1H), 6.80 (d, 1H), 5.53 (s, 2H), 4.87-4.78 (m, 2H), 4.70 (dd, 1H), 4.44 (dd, 1H), 4.24 (m, 1H), 3.93 (m, 2H), 3.76 (m, 1H), 3.43 (m, 3H), 3.12-3.02 (m, 1H), 2.30-2.13 (m, 5H), 2.02-1.86 (m, 2H), 1.69 (m,1H). MS(ES+): 552.1 (M+H).
14A-02 2-[(4-{6-[(4cyanobenzyl)oxy ]pyridin-2yl}piperidin-1 yl)methyl]-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, enantiomer 2 A 1.4 1H NMR (400 MHz, CD3OD) δ 8.34 (d, 1H), 8.03 (dd, 1H), 7.80 (d, 1H), 7.73 (d, 2H), 7.64-7.70 (m, 1H), 7.61 (d, 2H), 6.93 (d, 1H), 6.78 (d, 1H), 5.51 (s, 2H), 4.82 (d, 2H), 4.68 (dd, 1H), 4.42 (dd, 1H), 4.17-4.27 (m, 1H), 3.83-3.97 (m, 3H), 3.70-3.81 (m, 1H), 3.35-3.45 (m, 2H), 2.98-3.11 (m, 1H), 2.13-2.28 (m, 5H), 1.87-2.00 (m, 2H), 1.61-1.74 (m, 1H). MS(ES+): 552.1 (M+H).
173
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-03 2-[(4-{6-[(4cyanobenzyl)oxy ]-5-fluoropyridin2-yl}piperidin-1 yl)methyl]-1(tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, enantiomer 1 B 8.1 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.80- 7.73 (m, 2H), 7.65 (d, 2H), 7.51 (dd, 1H), 6.95 (dd, 1H), 5.60 (s, 2H), 4.86- 4.78 (m, 2H), 4.70 (dd, 1H), 4.44 (dd, 1H), 4.31-4.17 (m, 1H), 3.93 (m, 3H), 3.76 (m, 1H), 3.41 (s, 2H), 3.06 (d, 1H), 2.32-2.09 (m, 5H), 1.94 (m, 2H), 1.69 (m, 1H). MS(ES+): 570.2 (M+H).
14A-04 2-[(4-{6-[(4cyanobenzyl)oxy ]-5-fluoropyridin2-yl}piperidin-1 - yl)methyl]-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, enantiomer 2 B 11.4 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.79- 7.73 (m, 2H), 7.65 (d, 2H), 7.51 (dd, 1H), 6.95 (dd, 1H), 5.60 (s, 2H), 4.864.77 (m, 2H), 4.70 (dd, 1H), 4.44 (dd, 1H), 4.24 (m, 1H), 3.93 (m, 2H), 3.76 (m, 1H), 3.40 (m, 3H), 3.05 (m, 1H), 2.29-2.12 (m, 5H), 1.94 (m, 2H), 1.69 (m, 1H). MS(ES+): 570.2 (M+H).
174
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-05 2-[(4-{6-[(4cyanobenzyl)oxy ]-5-fluoropyndin- 2- yl}piperidin-1 - yl)methyl]-1(tetrahydrofuran- 3- ylmethyl)-1Hbenzimidazole-6- carboxylic acid, enantiomer 1 C 25.0 1H NMR (400 MHz, CD3OD) δ 8.35 (d, 1H), 8.04 (dd, 1H), 7.81 (d, 1H), 7.787.72 (m, 2H), 7.65 (d, 2H), 7.49 (dd, 1H), 6.94 (dd, 1H), 5.60 (s, 2H), 4.82 (s, 2H), 4.43-4.29 (m, 2H), 4.05 (m, 1H), 3.94 (m, 2H), 3.79 (m, 1H), 3.67 (m, 1H), 3.53 (m, 1H), 3.38 (m, 2H), 3.09-2.83 (m, 2H), 2.19 (m, 4H), 2.09 (m, 1H), 1.78 (m, 1H). MS(ES+): 570.1 (M+H).
14A-06 2-[(4-{6-[(4cyanobenzyl)oxy ]-5-fluoropyridin- 2- yl}piperidin-1 - yl)methyl]-1 (tetrahydrofuran- 3- ylmethyl)-1 Hbenzimidazole-6- carboxylic acid, enantiomer 2 C 29.2 1H NMR (400 MHz, CD3OD) δ 8.37 (s, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.77 (d, 2H), 7.67 (d, 2H), 7.50 (dd, 1H), 6.95 (dd, 1H), 5.61 (s, 2H), 4.83 (s, 2H), 4.46-4.28 (m, 2H), 4.07 (m, 1H), 4.02-3.89 (m, 2H), 3.81 (m, 1H), 3.69 (dd, 1H), 3.55 (m, 1H), 3.39 (m, 2H), 3.11-2.98 (m, 1H), 2.92 (s, 1H), 2.302.06 (m, 5H), 1.80 (m, 1H). MS(ES+): 570.2 (M+H).
175
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-07 2-{[(2S)-4-{6-[(4cyanobenzyl)oxy ]pyridin-2-yl}-2methylpiperazin- 1 -yl]methyl}-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, diastereomer 1 D 8.7 1H NMR (400 MHz, CD3OD) δ 8.40 (d, 1H), 8.09 (dd, 1H), 7.80 (d, 1H), 7.72- 7.66 (m, 2H), 7.55 (dd, 3H), 6.40 (d, 1H), 6.27 (d, 1H), 5.42 (s, 2H), 4.72 (dd, 1H), 4.53 (d, 1H), 4.43 (dd, 1H), 4.25 (m, 1H), 4.04 (m, 2H), 3.89 (m, 1H), 3.50 (m, 3H), 3.16 (m, 1H), 2.23 (m, 1H), 2.01-1.89 (m, 2H), 1.69 (m, 1H), 1.39 (d, 3H). MS(ES+): 567.1 (M+H).
14A-08 2-{[(2S)-4-{6-[(4cyanobenzyl)oxy ]pyridin-2-yl}-2methylpiperazin- 1 -yl]methyl}-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, diastereomer 2 D 14.8 1H NMR (400 MHz, CD3OD) δ 8.40 (s, 1H), 8.06-8.12 (m, 1H), 7.79 (d, 1H), 7.68 (d, 2H), 7.57 (d, 2H), 7.53 (t, 1H), 6.39 (d, 1H), 6.26 (d, 1H), 5.42 (s, 2H), 4.67 (dd, 1H), 4.43-4.55 (m, 2H), 4.21-4.32 (m, 1H), 3.94-4.12 (m, 2H), 3.84-3.93 (m, 1H), 3.73 (q, 1H), 3.43 (brs, 3H), 3.12 (brs, 1H), 2.22 (dq, 1H), 1.88-2.00 (m, 2H), 1.69 (dq, 1H), 1.39 (d, 3H). MS(ES+): 567.1 (M+H).
176
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-09 2-[(4-{6-[(4cyano-2fluorobenzyl)oxy] pyridin-2yl)piperidin-1 yl)methyl]-1 (tetra hydrofura n3-ylmethyl)-1Hbenzimidazole-6carboxylic acid, enantiomer 1 E 5.25 1H NMR (400 MHz, CD3OD) δ 8.37 (d, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.78- 7.66 (m, 2H), 7.66-7.58 (m, 2H), 6.97 (d, 1H), 6.81 (d, 1H), 5.58 (s, 2H), 4.83 (s, 2H), 4.45-4.31 (m, 2H), 4.07 (m, 1H), 3.96 (d, 2H), 3.81 (m, 1H), 3.69 (dd, 1H), 3.55 (dd, 1H), 3.41 (m, 2H), 3.07 (m, 1 H), 2.94 (m, 1 H), 2.35- 2.16 (m, 4H), 2.16-2.05 (m, 1H), 1.80 (m, 1H). MS(ES+): 570.2 (M+H).
14A-10 2-[(4-{6-[(4cyano-2fluorobenzyl)oxy] pyridin-2yl}piperidin-1 yl)methyl]-1 (tetrahydrofuran3-ylmethyl)-1Hbenzimidazole-6carboxylic acid, enantiomer 2 E 6.0 1H NMR (400 MHz, CD3OD) δ 8.37 (d, 1H), 8.05 (dd, 1H), 7.82 (d, 1H), 7.71 (m, 2H), 7.66-7.55 (m, 2H), 6.97 (d, 1H), 6.81 (d, 1H), 5.58 (s, 2H), 4.83 (s, 2H), 4.45-4.30 (m, 2H), 4.07 (m, 1H), 3.96 (m, 2H), 3.81 (m, 1H), 3.69 (m, 1H), 3.55 (m, 1H), 3.40 (m, 2H), 3.06 (d, 1H), 2.92 (d, 1H), 2.34-2.16 (m, 4H), 2.15-2.04 (m, 1H), 1.80 (m, 1H). MS(ES+): 570.2 (M+H)
177
Ex. # Name *Method *Ret. time (min) NMR data/LC-MS data
14A-11 2-{[(2S)-4-{6-[(4cyano-2fluorobenzyl)oxy] pyridin-2-yl}-2methylpiperazin- 1 -yl]methyl}-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, diastereomer 1 F 6.8 1H NMR (400 MHz, CD3OD) δ 8.43 (d, 1H), 8.12 (dd, 1H), 7.82 (d, 1H), 7.65 (t, 1H), 7.61-7.49 (m, 3H), 6.43 (d, 1H), 6.28 (d, 1H), 5.48 (s, 2H), 4.70 (m, 1H), 4.63-4.43 (m, 2H), 4.28 (m, 1H), 4.07 (m, 2H), 3.90 (m, 1H), 3.75 (m, 1H), 3.51 (m, 3H), 3.22 (m, 1H), 2.24 (m, 1H), 2.03-1.88 (m, 2H), 1.71 (m, 1H), 1.43 (d, 3H). MS(ES+): 585.1 (M+H)
14A-12 2-{[(2S)-4-{6-[(4cyano-2fluorobenzyl)oxy] pyridin-2-yl}-2methylpiperazin- 1 -yl]methyl}-1 (tetrahydrofuran2-ylmethyl)-1 Hbenzimidazole-6carboxylic acid, diastereomer 2 F 8.4 1H NMR (400 MHz, CD3OD) δ 8.36 (d, 1H), 8.04 (dd, 1H), 7.74 (d, 1H), 7.64 (m, 1H), 7.60-7.42 (m, 3H), 6.35 (d, 1H), 6.21 (d, 1H), 5.46 (s, 2H), 477 (dd, 1H), 4.67 (d, 1H), 4.49 (m,1H), 4.33 (m, 1H), 4.11 (d, 1H), 4.01-3.82 (m, 3H), 3.75 (m, 1H), 3.30-3.23 (m, 1H), 3.18-2.99 (m, 3H), 2.77 (m, 1H), 2.19 (m, 1H), 2.00-1.86 (m, 2H), 1.71 (m, 1H), 1.31 (d, 3H). MS(ES+): 585.1 (M+H)
Séparation methods and rétention times for the methyl esters of examples:
Method A: Préparative method: Column: AD (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/50% MeOH (0.1% NH4OH); Flow rate: 80 ml/min; Wavelength: 220 nm. Anaiytical method: Column: AD (50 mm x 4.6 mm, 3 pm); Mobile phase: CO2 w/ 40% EtOH (0.05% 5 NHEt2); Flow rate: 4 ml/min; Wavelength: 220 nm
178
Method B: Column: AD (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/ 40% MeOH (0.1% NH4OH); Flow rate: 80 ml/min; Wavelength: 220 nm
Method C: Column: IC (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/ 50% MeOH (0.1% NH4OH); Flow rate: 80 ml/min; Wavelength: 220 nm
Method D: Column: AD (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/ 50% MeOH (0.1% NH4OH); Flow rate: 80 ml/min; Wavelength: 220 nm
Method E: Column: OD (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/ 45% EtOH (0.1% NH4OH); Flow rate: 70 ml/min; Wavelength: 220 nm
Method F: Column: OJ (250 mm x 30 mm, 10 pm); Mobile phase: CO2 w/ 30% EtOH (0.1 NH4OH); Flow rate: 80 ml/min; Wavelength: 220 nm
CHO GLP-1R Clone H6 - Assay 1
GLP-1 R-mediated agonist activity was determined with a cell-based functional assay utilizing an HTRF (Homogeneous Time-Resolved Fluorescence) cAMP détection kit (cAMP Hl Range Assay Kit; CisBio cat#62AM6PEJ) that measures cAMP levels in the cell. The method is a compétitive immunoassay between native cAMP produced by the cells and exogenous cAMP labeled with the dye d2. The tracer binding is visualized by a mAb anti-cAMP labeled with Cryptate. The spécifie signal (i.e. energy transfer) is inversely proportional to the concentration of cAMP in either standard or experimental sample.
The human GLP-1 R coding sequence (NCBI Reference Sequence NP_002053.3, including naturally-occurring variant Gly168Ser) was subcloned into pcDNA3 (Invitrogen) and a cell line stably expressing the receptor was isolated (designated Clone H6). Saturation binding analyses (filtration assay procedure) using 125l-GLP-1?-36 (Perkin Elmer) showed that plasma membranes derived from this cell line express a high GLP1R density (Ka: 0.4 nM , Bmax: 1900 fmol/mg protein).
Cells were removed from cryopreservation, re-suspended in 40 mL of Dulbecco’s Phosphate Buffered Saline (DPBS - Lonza Cat# 17-512Q) and centrifuged at 800 x g for 5 min at 22 °C. The cell pellet was then re-suspended in 10 mL of growth medium [DMEM/F12 1:1 Mixture with HEPES, L-GIn, 500 mL (DMEM/F12 Lonza Cat# 12-719F), 10% heat inactivated fêtai bovine sérum (Gibco Cat # 16140-071), 5 mL of 100X PenStrep (Gibco Cat# 15140-122), 5 mL of 100X L-Glutamine (Gibco Cat# 25030-081) and
179
500 pg/mL Geneticin (G418) (Invitrogen #10131035)]. A 1 mL sample of the cell suspension in growth media was counted on a Becton Dickinson ViCell to détermine cell viability and cell count per mL. The remaining cell suspension was then adjusted with growth media to deliver 2000 viable cells per well using a Matrix Combi Multidrop reagent dispenser, and the cells were dispensed into a white 384 well tissue culture treated assay plate (Corning 3570). The assay plate was then incubated for 48 hours at 37 °C in a humidified environment in 5% carbon dioxide.
Varying concentrations of each compound to be tested (in DMSO) were diluted in assay buffer (HBSS with Calcium/Magnesium (Lonza/BioWhittaker cat # 10-527F) /0.1 % BSA (Sigma Aldrich cat # A7409-1 L)/20 mM HEPES (Lonza/BioWhittaker cat #17-737E) containing 100 μΜ 3-isobutyl-1-methylxanthin (IBMX; Sigma cat # I5879). The final DMSO concentration is 1%.
After 48 hours, the growth media was removed from the assay plate wells, and the cells were treated with 20 pL of the serially diluted compound in assay buffer for 30 minutes at 37 °C in a humidified environment in 5% carbon dioxide. Following the 30 minute incubation, 10 pL of labeled d2 cAMP and 10 pL of anti-cAMP antibody (both diluted 1:20 in cell lysis buffer; as described in the manufacturées assay protocol) were added to each well of the assay plate. The plates were then incubated at room température and after 60 minutes, changes in the HTRF signal were read with an Envision 2104 multi-label plate reader using excitation of 330 nm and émissions of 615 and 665 nm. Raw data were converted to nM cAMP by interpolation from a cAMP standard curve (as described in the manufacturées assay protocol) and the percent effect was determined relative to a saturating concentration of the full agonist GLP-I7-36 (1 μΜ) included on each plate. EC50 déterminations were made from agonist dose-response curves analyzed with a curve fitting program using a 4-parameter logistic dose response équation.
CHO GLP-1R Clone C6 - Assay 2
GLP-1 R-mediated agonist activity was determined with a cell-based functional assay utilizing an HTRF (Homogeneous Time-Resolved Fluorescence) cAMP détection kit (cAMP Hl Range Assay Kit; Gis Bio cat #62AM6PEJ) that measures cAMP levels in the cell. The method is a compétitive immunoassay between native cAMP produced by
180 the cells and exogenous cAMP labeled with the dye d2. The tracer binding is visualized by a mAb anti-cAMP labeled with Cryptate. The spécifie signai (i.e. energy transfer) is inversely proportional to the concentration of cAMP in either a standard or an experimental sample.
The human GLP-1 R coding sequence (NCBI Reference Sequence NP_002053.3, including naturally-occurring variant Leu260Phe) was subcloned into pcDNA5-FRT-TO and a clonal CHO cell line stably expressing a low receptor density was isolated using the Flp-ln™ T-Rex™ System, as described by the manufacturer (ThermoFisher). Saturation binding analyses (filtration assay procedure) using 125I-GLP-1 (Perkin Elmer) showed that plasma membranes derived from this cell line (designated clone C6) express a low GLP-1 R density (Kd: 0.3 nM, Bmax: 240 fmol/mg protein), relative to the clone H6 cell line.
Cells were removed from cryopreservation, re-suspended in 40 mL of Dulbecco’s Phosphate Buffered Saline (DPBS - Lonza Cat# 17-512Q) and centrifuged at 800 x g for 5 min at22 °C. The DPBS was aspirated, and the cell pelletwas re-suspended in 10 mL of complété growth medium (DMEM:F12 1:1Mixture with HEPES, L-GIn, 500 mL (DMEM/F12 Lonza Cat # 12-719F), 10% heat inactivated fêtai bovine sérum (Gibco Cat # 16140-071), 5 mL of 100X Pen-Strep (Gibco Cat # 15140-122), 5 mL of 100X LGlutamine (Gibco Cat # 25030-081 ), 700 pg/mL Hygromycin (Invitrogen Cat # 10687010) and 15 pg/mL Blasticidin (Gibco Cat# R21001). A 1 mL sample of the cell suspension in growth media was counted on a Becton Dickinson ViCell to détermine cell viability and cell count per mL. The remaining cell suspension was then adjusted with growth media to deliver 1600 viable cells per well using a Matrix Combi Multidrop reagent dispenser, and the cells were dispensed into a white 384 well tissue culture treated assay plate (Corning 3570). The assay plate was then incubated for 48 h at 37 °C in a humidified environment (95% O2, 5% CO2)
Varying concentrations of each compound to be tested (in DMSO) were diluted in assay buffer [HBSS with Calcium/Magnesium (Lonza/BioWhittaker cat# 10-527F) /0.1% BSA (Sigma Aldrich cat # A7409-1 L)/20 mM HEPES (Lonza/BioWhittaker cat #17-737E)] containing 100 μΜ 3-isobutyl-1-methylxanthin (IBMX; Sigma cat # I5879). The final DMSO concentration in the compound/assay buffer mixture is 1%.
I8l
After 48 h, the growth media was removed from the assay plate wells, and the cells were treated with 20 pL of the serially diluted compound in assay buffer for 30 min at 37 °C in a humidified environment (95% O2, 5% CO2). Following the 30 min incubation, 10 pL of labeled d2 cAMP and 10 pL of anti-cAMP antibody (both diluted 1:20 in cell lysis 5 buffer; as described in the manufacturées assay protocol) were added to each well of the assay plate. The plates were then incubated at room température and after 60 minutes, changes in the HTRF signal were read with an Envision 2104 multi-label plate reader using excitation of 330 nm and émissions of 615 and 665 nm. Raw data were converted to nM cAMP by interpolation from a cAMP standard curve (as described in the I0 manufacturer's assay protocol) and the percent effect was determined relative to a saturating concentration of the full agonist GLP-1 (1 μΜ) included on each plate. ECso déterminations were made from agonist dose response curves analyzed with a curve fitting program using a 4-parameter logistic dose response équation.
In Table 9, assay data are presented to two (2) significant figures as the géométrie 15 mean (ECsos) and arithmetic mean (Emax) based on the number of replicates listed (Number). A blank cell means there was no data for that Example or the Emax was not calculated.
Table 9
Example number Assay 1 EC50 (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
1A-01 81 77 5 910 94 4
1A-02 16 85 6 320 88 11
1A-03 4.3 83 3 92 83 3
1A-04 21 79 3 350 82 3
1A-05 42 75 3 530 67 3
1A-06 29 84 3 350 70 3
1A-07 3.9 82 4 45 82 5
1A-08 7.1 81 3 120 85 3
1A-09 0.95 92 1 17 120 3
1A-10 930 86 3 9000 100 3
1 A-11 19 76 3 530 97 3
182
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
1A-12 750 76 3
1A-13 210 66 3
1A-14 47 71 3 1600 81 3
1A-15 >20000 1
1A-16 1.5 86 3 14 82 3
1A-17 2.4 87 3 45 95 3
1A-18 6.4 90 4 110 94 3
1A-19 0.28 84 5 3.2 84 4
1A-20 44 81 3 880 90 3
1A-21 4.9 77 7 75 83 3
1A-22 36 78 3 400 86 3
1A-23 50 83 3 1000 98 3
1A-24 >11000 84 3
1A-25 45 65 3 1000 84 3
1A-26 70 80 3 1800 85 3
1A-27 190 91 3 1400 47 3
1A-28 300 92 3 7700 100 3
1A-29 260 88 3 5600 86 3
1A-30 150 86 3 4100 110 3
2A-01 90 76 55 1800 89 43
2A-02 7.9 95 5 110 89 7
2A-03 150 74 3 1200 44 5
2A-04 36 84 6 150 92 3
2A-05 6 73 3 150 84 3
2A-06 9 82 3 170 85 3
2A-07 140 72 3 1600 46 3
2A-08 5.8 72 3 94 76 4
2A-09 120 76 4 2200 83 3
2 A-10 43 82 3 680 110 4
183
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 ECso (nM) Assay 2 Emax (%) Assay 2 Number
2A-11 210 79 3
2 A-12 340 74 3
2A-13 770 78 3 >15000 100 3
2A-14 110 71 3 3000 92 3
2A-15 22 87 3 280 91 3
2A-16 370 75 3
2A-17 24 76 5 1200 94 8
2A-18 6 80 3 78 88 3
2A-19 7.9 80 5 150 100 3
2A-20 0.96 80 5 14 95 2
2A-21 8.5 88 3 220 110 3
2A-22 14 72 4 190 83 3
2A-23 0.5 73 3 22 96 6
3A-01 0.94 83 15 12 98 21
4A-01 1.1 79 5 13 100 18
5A-01 0.34 78 6 7.4 94 6
6A-01 0.76 88 9 8.8 100 15
7A-01 3.2 84 7 55 86 11
8A-01 100 99 3 1100 90 3
8A-02 150 80 3
8A-03 18 84 3 350 77 3
8A-04 120 79 3 1700 88 3
9A-01 1200 78 3
9A-02 79 81 3 4000 75 3
9A-03 200 79 3
9A-04 2900 89 3
9A-05 2700 85 3
9A-06 870 82 3
9A-07 170 78 8 2100 71 3
184
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
9A-08 2400 87 3
9A-09 880 59 3
9 A-10 4500 48 4
9A-11 1600 83 3
9A-12 >17000 100 3
9A-13 170 68 3
9A-14 1800 93 3
9A-15 180 78 8 3500 90 3
10A-01 3.2 77 3 43 84 3
10A-02 0.34 89 5 2.2 97 5
10A-03 1700 82 3
10A-04 49 71 3 2100 90 3
10A-05 2.4 71 4 38 83 3
10A-06 68 77 3 1700 110 3
10A-07 2.8 82 3 68 81 3
10A-08 0.55 77 4 9.2 94 6
10A-09 0.99 95 4 10 120 7
10A-10 0.3 84 4 4.1 100 2
10A-11 75 69 3
10A-12 110 68 3 4400 110 3
10A-13 4.1 67 3 170 75 3
10A-14 8.1 74 3 220 93 4
10A-15 1.3 72 4 27 87 3
10A-16 1.7 67 3 45 83 3
10A-17 1.8 77 3 59 85 3
10A-18 1.6 78 7 33 78 3
10A-19 >19000 100 3
10A-20 >15000 98 3 >20000 1
10A-21 18 88 3 400 100 3
185
Example number Assay 1 EC50 (nM) Assay 1 Emax(%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
10A-22 5.7 67 3 100 79 3
10A-23 38 76 3 760 91 3
10A-24 5.7 78 3 130 94 3
10A-25 1.7 82 3 41 99 3
10A-26 7 59 3 190 80 3
10A-27 13 75 3 250 80 3
10A-27 50 81 3 870 83 3
10A-28 190 71 3
10A-29 390 82 3
10A-30 550 71 3
10A-31 3.4 73 3 59 89 3
10A-32 0.47 77 5 5 94 6
10A-33 1.5 73 3 24 91 3
10A-34 1.5 80 7 29 95 5
10A-35 0.3 93 5 3.8 93 6
10A-36 0.33 82 3 13 110 7
10A-37 3.4 86 6 23 110 7
10A-38 130 72 3
10A-39 170 69 3
10A-40 1200 53 3
10A-41 12 75 4 140 82 3
10A-42 2.7 73 4 29 74 5
10A-43 4 64 3 48 79 3
10A-44 6 73 3 99 81 3
10A-45 1 76 3 19 75 3
10A-46 1700 80 3
10A-47 0.3 80 3 4.4 95 6
10A-48 8.6 64 3 140 76 3
10A-49 0.56 73 6 9.6 84 3
186
Example number Assay 1 EC50 (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
10A-50 290 64 3
10A-51 390 72 3
10A-52 1300 79 3
10A-53 3.2 68 3 39 88 3
10A-54 0.71 81 5 11 100 6
10A-55 1.2 84 5 24 98 5
10A-56 0.5 78 3 16 86 5
10A-57 9.4 69 3 160 71 3
1OA-58 0.52 70 4 8.5 78 4
10A-59 4.7 71 3 84 83 4
10A-60 31 81 3 460 66 3
10A-61 1.5 74 6 35 89 3
10A-62 2.9 96 4 28 97 3
10A-63 0.58 86 3 11 110 5
10A-64 2 82 3 32 79 3
10A-65 1.6 84 6 35 78 3
10A-66 0.39 84 4 3.4 100 4
10A-67 0.59 83 5 6.8 93 5
10A-68 140 76 4
10A-69 2 84 3 20 87 3
10A-70 5 65 1 72 87 1
10A-71 190 62 3 5800 85 4
10A-72 3.4 79 4 53 68 5
10A-73 8.6 78 5 88 82 5
10A-74 0.9 94 3 9.7 100 3
10A-75 0.95 95 4 13 91 5
10A-76 2.9 79 4 51 95 3
10A-77 0.96 100 2 10 120 3
10A-78 1.6 83 6 28 88 4
187
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
10A-79 33 80 3 670 110 3
11A-01 >10000 85 3
11A-02 >15000 100 3
11A-03 >16000 100 3
11A-04 >19000 100 3
11A-05 >20000 1
11A-06 >20000 1
11A-07 >20000 1
11A-08 >20000 1
11A-09 >20000 1
11A-10 >20000 1
11A-11 >20000 1
11A-12 >20000 1
11A-13 >20000 1
11A-14 8.1 64 3 230 77 3
11A-15 9.4 69 3 94 92 3
11A-16 11 71 4 410 75 3
11A-17 11 65 2 380 96 3
11A-18 14 80 3 270 92 1
11A-19 15 83 3 230 110 3
11A-20 15 83 4 270 88 3
11A-21 18 82 4 270 83 3
11A-22 21 82 6 200 81 3
11A-23 25 78 3 330 96 3
11A-24 28 80 3 450 89 3
11A-25 30 77 3 360 89 3
11A-26 36 73 3 1100 79 3
11A-27 44 72 3 490 98 2
11A-28 54 77 3 1200 82 3
188
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
11A-29 55 71 3 1700 99 3
11A-30 56 81 8 590 85 4
11A-31 72 76 3 1500 81 3
11A-32 87 83 3 3100 110 3
11A-33 96 86 6 1400 94 4
11A-34 110 70 5 3500 95 3
11A-35 110 74 6 2700 96 4
11A-36 110 79 6 2200 89 4
11A-37 120 93 3 1300 96 3
11A-38 120 80 6 1500 92 4
11A-39 130 80 3
11A-40 170 77 3
11A-41 190 74 5
11A-42 190 86 3
11A-43 190 80 5 3600 93 3
11A-44 210 77 3
11A-45 290 74 3
11A-46 300 66 3
11A-47 320 79 3
11A-48 350 71 3
11A-49 380 68 3
11A-50 380 75 3
11A-51 390 69 2
11A-52 440 86 3
11A-53 450 71 3 5600 76 3
11A-54 500 69 3
11A-55 520 80 3
11A-56 1100 47 4
11A-57 1100 65 1
189
Example number Assay 1 EC50 (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 EC50 (nM) Assay 2 Emax (%) Assay 2 Number
11A-58 1100 81 3
11A-59 1400 97 3
11A-60 1600 80 3
11A-61 1900 79 3
11A-62 2200 87 4
11A-63 2500 71 3
11A-64 2900 88 3
11A-65 3100 51 3
11A-66 4000 91 3
11A-67 9300 100 3
11A-68 63 78 3 2000 82 3
11A-69 5.3 76 3 21 84 3
11A-70 0.7 86 4 10 89 6
11A-71 30 73 4 570 93 8
11A-72 5 82 4 41 77 4
11A-73 150 68 3 5300 80 4
11A-74 560 72 3
12A-01 >20000 1
12A-02 36 71 3 1600 82 3
12A-03 600 70 3
12A-04 250 64 4
12A-05 1300 42 3
12A-06 510 64 3
12A-07 37 69 3 1200 83 3
12A-08 6.1 89 4 150 97 3
12A-09 21 79 3 540 80 3
12A-10 6.9 78 4 170 96 3
12A-11 54 81 4 2100 100 3
13A-01 1200 58 3
190
Example number Assay 1 ECso (nM) Assay 1 Emax (%) Assay 1 Number Assay 2 ECso (nM) Assay 2 Emax (%) Assay 2 Number
13A-02 420 81 3
13A-03 5.2 66 3 120 80 3
13A-04 46 66 4 1400 83 3
14A-01 5.6 80 3 200 89 3
14A-02 94 78 3 1500 69 3
14A-03 6.3 83 3 110 87 2
14A-04 100 78 3 1100 75 3
14A-05 28 82 3 350 70 3
14A-06 4.2 69 3 77 75 3
14A-07 1.9 63 3 55 75 3
14A-08 19 72 4 380 84 3
14A-09 3.3 73 4 54 81 3
14A-10 12 64 3 270 84 3
14A-11 7 65 3 140 71 3
14A-12 1.4 77 7 20 79 3
AH patents, patent applications and references referred to herein are hereby incorporated by reference in their entirety.

Claims (25)

  1. It is claimed:
    1. A compound of Formula I
    R4
    or a pharmaceutically acceptable sait thereof, wherein each R1 is independently halogen, -CN, —Ci salkyl, or -OCi-3alkyl, wherein the alkyl of Ci salkyl and OCi-salkyl is substituted with 0 to 3 F atoms;
    m is 0, 1,2, or 3;
    each R2 is independently F, Cl, or -CN;
    p is 0, 1 or 2;
    each R3 is independently F, -OH, -CN, —Ci-salkyl, -OCi-salkyl, or-C3-4cycloalkyl, or 2 R3s may together cyclize to form -C3-4spirocycloalkyl, wherein the alkyl of Ci-salkyl and OCi-salkyl, cycloalkyl, or spirocycloalkyl may be substituted as valency allows with 0 to 3 F atoms and with 0 to 1 -OH;
    q is 0, 1, or 2;
    Y is CH or N;
    R4 is —Ci salkyl, -Co-3alkylene-C3-6cycloalkyl, -Co-salkylene-R5, or-Ci-salkylene-R6, wherein said alkyl may be substituted as valency allows with 0 to 3 substituents independently selected from 0 to 3 F atoms and 0 to 1 substituent selected from -Co-ialkylene-CN, -Co-ialkylene-OR°, and -N(Rn)2, and wherein said alkylene and cycloalkyl may be independently substituted as valency allows with 0 to 2 substituents independently selected from 0 to 2 F atoms and 0 to 1 substituent selected from -Co-ialkylene-CN, -Co-ialkylene-OR°, and -N(Rn)2;
    R5 is a 4- to 6-membered heterocycloalkyl, wherein said heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from:
    192
    0 to 1 oxo (—Ο),
    0 to 1 -CN,
    0 to 2 F atoms, and
    0 to 2 substituents independently selected from -Ci-3alkyl and -OC-i-salkyl, wherein the alkyl of Ci-salkyl and OCi-salkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
    0 to 3 F atoms,
    0 to 1 -CN, and
    0 to 1 -OR°;
    R6 is a 5- to 6-membered heteroaryl, wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows independently selected from:
    0 to 2 halogens,
    0 to 1 substituent selected from -OR° and -N(RN)2, and
    0 to 2 —Ci-salkyl, wherein the alkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
    0 to 3 F atoms, and
    0 to 1 -OR°;
    each R° is independently H, or —Ci-aalkyl, wherein Ci salkyl may be substituted with 0 to 3 F atoms;
    each RN is independently H, or -Ci-3alkyl;
    Z1 is CH or N;
    Z2 and Z3 are each independently -CRZ or N, provided that when Z1 or Z3 is N, Z2 is -CRZ; and each Rz is independently H, F, Cl, or-CHs.
    193
  2. 2. The compound of claim 1, wherein the compound is a compound of Formula II
    R4
    II or a pharmaceutically acceptable sait thereof, wherein
    5 m is 0 or 1 ;
    R2 is F;
    p is 0, or 1 ; and q is 0 or 1.
  3. 3. The compound of claim 1 or claim 2, wherein the compound is a compound of
    10 Formula lll
    R4
    lll or a pharmaceutically acceptable sait thereof, wherein m is 0 or 1;
    15 R2 is F;
    p is 0, or 1;
    R3 is —Ci-2alkyl, wherein Ci-2alkyl may be substituted as valency allows with 0 to
    3 F atoms; and q is 0 or 1.
    194
  4. 4. The compound of any of daims 1 to 3, wherein each R1 is independently F, Cl, -CN, -CH3, or-CFs, or a pharmaceutically acceptable sait thereof.
  5. 5. The compound of any of daims 1 to 4, wherein the heterocycloalkyl is
    wherein the heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from:
    0 to 1 oxo (O=),
    0 to 1 -CN,
    0 to 2 F atoms, and
    0 to 2 substituents independently selected from —Ci-salkyl and -OCi-salkyl, wherein the alkyl of Ci-3alkyl and OCi-salkyl may be independently substituted with 0 to 3 substituents as valency allows independently selected from:
    0 to 3 F atoms,
    0 to 1 -CN, and
    0 to 1 -OR0, or a pharmaceutically acceptable sait thereof.
  6. 6. The compound of any of daims 1 to 5, wherein
    R4 is -CH2-R5, wherein R5 is the 4- to 5-membered heterocycloalkyl, wherein said heterocycloalkyl may be substituted with 0 to 2 substituents as valency allows independently selected from:
    0 to 2 F atoms, and
    0 to 1 substituent selected from -OCH3 and -CH2OCH3;
    or a pharmaceutically acceptable sait thereof.
  7. 7. The compound of any of daims 1 to 4, wherein said heteroaryl is
    195
    and wherein said heteroaryl may be substituted with 0 to 2 substituents as valency allows independently selected from:
    0 to 3 halogens,
    0 to 1 substituent selected from -OR0 and -N(RN)2, and
    0 to 2 —Ci-aalkyl, wherein the alkyl may be substituted with 0 to 3 substituents as valency allows independently selected from:
    0 to 3 F atoms, and
    0 to 1 -OR0;
    or a pharmaceutically acceptable sait thereof.
  8. 8. The compound of any of daims 1 to 4, and 7, wherein
    R4 is -CH2-R6, wherein R6 is the 5-membered heteroaryl, wherein said heteroaryl may be substituted with 0 to 2 substitutents as valency allows independently selected from:
    0 to 2 halogens, wherein the halogen is independently selected from F and Cl,
    0 to 1 -OCH3, and
    0 to 1 -CH3, -CH2CH3, -CF3, or-CH2CH2OCH3;
    or a pharmaceutically acceptable sait thereof.
  9. 9. A compound that is
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    196
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[oxetan2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-{[4-(6-{[(4-cyano-2-fluorophenyl)(methyl-d2)]oxy}pyridin-2-yl)piperidin-1yl]methyI}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyI}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)-oxetan2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3R)tetrahydrofuran-3-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-3-[(2S)oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    197
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3R)tetrahydrofuran-3-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(3S)tetrahydrofuran-3-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)tetrahydrofuran-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2S)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(2R)tetrahydrofuran-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(2,4-difluorobenzyl)oxy]-5-fluoropyridin-2-yl}-2-methylpiperazin-1yIJmethyI}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-3-[(2S)-oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-3-[(2S)-oxetan-2-ylmethyl]-3H-imidazo[4,5-b]pyridine-5-carboxylic acid; or
    2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}-1[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid;
    or a pharmaceutically acceptable sait thereof.
    198
  10. 10. A compound that is
    or a pharmaceutically acceptable sait thereof.
  11. 11. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  12. 12. The compound of claim 11 that is a free acid.
  13. 13. The compound of claim 11 that is a tris sait.
  14. 14. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  15. 15. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]-5-fluoropyridin-2yl}piperidin-1-yl)methyl]-1-[(2S)-oxetan-2-ylmethyl]-1H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  16. 16. A compound that is 2-{[4-(6-{[(4-cyano-2-fluorophenyl)(methyl-d2)]oxy}pyridin-2- yl)piperidin-1 -y l]methy I}-1 -[(2S)-oxetan-2-ylmethyl]-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  17. 17. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(1,3- oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -yl)methyl]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    199
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1 -(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -yl)methyl]-1 -(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -[(1 methyl-1 H-1,2,3-triazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(1,3-oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyl}-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -(1,3-oxazol2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(2,4-difluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1-ethyl-1 Himidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -y l)methyl]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -y l)methyl]-1 -[(1 ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -yl)methyl]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -y l)methyl]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methyl]-1 -(1,3oxazol-4-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl) methy l]-1 -(1,3oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    200
    2-[(4-{6-[(2,4-d if luorobenzy l)oxy]py rid in-2-y l}piperid i n-1 -yl)methy l]-1 -(1,3-oxazol-
    5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(1,3oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 -yl)methyl]-1 -[(1 ethyl-1 H-1,2,3-triazol-5-yl)methy l]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl) methy IJ-1 -(1,2oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy l]-1 -(1,2oxazol-3-ylmethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy I]-1 -[(1 ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxyiic acid;
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yIJmethyI}-1 -[(1 -ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -yl)methyl]-1 -[(1 ethyl-1 H-1,2,3-triazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1ethyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1 -y l)methy I]-1 -[(1 methyl-1 H-imidazol-5-yl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-(1,3oxazol-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylic acid; or
    2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-3-(1,3oxazol-2-ylmethyl)-3H-imidazo[4,5-b]pyridine-5-carboxylic acid;
    or a pharmaceutically acceptable sait thereof.
    201
  18. 18. A compound that is
    or a pharmaceutically acceptable sait thereof.
  19. 19. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1yl)methyl]-1-(1,3-oxazol-5-ylmethyl)-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  20. 20. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1yl)methyl]-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  21. 21. A compound that is 2-[(4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}piperazin-1 yl)methyl]-1 -(1,3-oxazol-2-ylmethyl)-1 H-benzimidazole-6-carboxylic acid, or a pharmaceutically acceptable sait thereof.
  22. 22. A compound that is 2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-7-fluoro-1-(2- methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-7-fluoro1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}piperazin-1-yl)methyl]-1-(2methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1-yl]methyl}-1(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyano-2-fluorobenzyl)oxy]pyridin-2-yl}-2-methylpiperazin-1yl]methyI}-1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    202
    2-{[(2S)-4-{6-[(4-chloro-2-fluorobenzyl)oxy]-5-fluoropyridin-2-yl}-2methylpiperazin-1 -yl]methyl}-1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-{[(2S)-4-{6-[(4-cyanobenzyl)oxy]-5-fluoropyridin-2-yl}-2-methylpiperazin-1yl]methy l}-1 -(2-methoxyethyl)-1 H-benzimidazole-6-carboxylic acid;
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-(2methoxyethyl)-1H-benzimidazole-6-carboxylic acid; or
    2-[(4-{6-[(4-chloro-2-fluorobenzyl)oxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-[(1methoxycyclobutyl)methyl]-1 H-benzimidazole-6-carboxylic acid;
    or a pharmaceutically acceptable sait thereof.
  23. 23. A pharmaceutical composition comprising the compound of Formula I of any of daims 1 to 22, or a pharmaceutically acceptable sait thereof, and a pharmaceutically acceptable excipient.
  24. 24. A compound of any of daims 1 to 22 or a pharmaceutically acceptable sait thereof, for use in a method of treating cardiometabolic and associated diseases, wherein the disease isT1D, T2DM, pre-diabetes, idiopathic T1D, LADA, EOD, YOAD, MODY, malnutrition-related diabètes, gestational diabètes, hyperglycemia, insulin résistance, hepatic insulin résistance, impaired glucose tolérance, diabetic neuropathy, diabetic nephropathy, kidney disease, diabetic retinopathy, adipocyte dysfunction, viscéral adipose déposition, sleep apnea, obesity, eating disorders, weight gain from use of other agents, excessive sugar craving, dyslipidemia, hyperinsulinemia, NAFLD, NASH, fibrosis, cirrhosis, hepatocellular carcinoma,cardiovascular disease, atherosclerosis, coronary artery disease, peripheral vascular disease, hypertension, endothélial dysfunction, impaired vascular compliance, congestive heart failure, myocardial infarction, stroke, hémorrhagie stroke, ischémie stroke, traumatic brain injury, pulmonary hypertension, restenosis after angioplasty, intermittent claudication, post-prandial lipemia, metabolic acidosis, ketosis, arthritis, osteoporosis, Parkinson’s Disease, left ventricular hypertrophy, peripheral arterial disease, macular degeneration, cataract, glomerulosclerosis, chronic rénal failure, metabolic syndrome, syndrome X, premenstrual syndrome, angina pectoris, thrombosis, atherosclerosis, transient ischémie attacks, vascular restenosis, impaired glucose metabolism, conditions of impaired fasting plasma glucose, hyperuricemia, goût, erectile dysfunction, skin and
    203 connective tissue disorders, psoriasis, foot ulcérations, ulcerative colitis, hyper apo B lipoproteinemia, Alzheimer’s Disease, schizophrenia, impaired cognition, inflammatory bowel disease, short bowel syndrome, Crohn’s disease, colitis, irritable bowel syndrome, prévention or treatment of Polycystic Ovary Syndrome and treatment of addiction.
  25. 25. Use of a compound of any of daims 1 to 22 or a pharmaceutically acceptable sait thereof, in the manufacture of a pharmaceutical composition for treating cardiometabolic and associated diseases, wherein the disease is T1D, T2DM, pre-diabetes, idiopathic T1D, LADA, EOD, YOAD, MODY, malnutrition-related diabètes, gestational diabètes, hyperglycemia, insulin résistance, hepatic insulin résistance, impaired glucose tolérance, diabetic neuropathy, diabetic nephropathy, kidney disease, diabetic retinopathy, adipocyte dysfunction, viscéral adipose déposition, sleep apnea, obesity, eating disorders, weight gain from use of other agents, excessive sugar craving, dyslipidemia, hyperinsulinemia, NAFLD, NASH, fibrosis, cirrhosis, hepatocellular carcinoma.cardiovascular disease, atherosclerosis, coronary artery disease, peripheral vascular disease, hypertension, endothélial dysfunction, impaired vascular compliance, congestive heart failure, myocardial infarction, stroke, hémorrhagie stroke, ischémie stroke, traumatic brain injury, pulmonary hypertension, restenosis after angioplasty, intermittent claudication, post-prandial lipemia, metabolic acidosis, ketosis, arthritis, osteoporosis, Parkinson’s Disease, left ventricular hypertrophy, peripheral arterial disease, macular degeneration, cataract, glomerulosclerosis, chronic rénal failure, metabolic syndrome, syndrome X, premenstrual syndrome, angina pectoris, thrombosis, atherosclerosis, transient ischémie attacks, vascular restenosis, impaired glucose metabolism, conditions of impaired fasting plasma glucose, hyperuricemia, goût, erectile dysfunction, skin and connective tissue disorders, psoriasis, foot ulcérations, ulcerative colitis, hyper apo B lipoproteinemia, Alzheimer’s Disease, schizophrenia, impaired cognition, inflammatory bowel disease, short bowel syndrome, Crohn’s disease, colitis, irritable bowel syndrome, prévention or treatment of Polycystic Ovary Syndrome and treatment of addiction.
OA1201900230 2016-12-16 2017-12-01 GLP-1 receptor agonists and uses thereof. OA19245A (en)

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