WO2007126882A3 - Analyse de données d'expression de variants d'épissage - Google Patents

Analyse de données d'expression de variants d'épissage Download PDF

Info

Publication number
WO2007126882A3
WO2007126882A3 PCT/US2007/007671 US2007007671W WO2007126882A3 WO 2007126882 A3 WO2007126882 A3 WO 2007126882A3 US 2007007671 W US2007007671 W US 2007007671W WO 2007126882 A3 WO2007126882 A3 WO 2007126882A3
Authority
WO
WIPO (PCT)
Prior art keywords
analysis
expression data
splice variant
variant expression
qualitatively
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2007/007671
Other languages
English (en)
Other versions
WO2007126882A2 (fr
Inventor
Jonathan Bingham
Subha Srinivasan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Jivan Biologics Inc
Original Assignee
Jivan Biologics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Jivan Biologics Inc filed Critical Jivan Biologics Inc
Publication of WO2007126882A2 publication Critical patent/WO2007126882A2/fr
Anticipated expiration legal-status Critical
Publication of WO2007126882A3 publication Critical patent/WO2007126882A3/fr
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/30—Detection of binding sites or motifs
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • Medical Informatics (AREA)
  • Molecular Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical & Material Sciences (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

L'invention concerne des molécules indicatrices, des dispositifs, des algorithmes, un logiciel, des systèmes, ainsi que des procédés permettant de mesurer qualitativement et quantitativement les niveaux de variants d'épissage et de déterminer les motifs d'épissage dans un ou plusieurs échantillons.
PCT/US2007/007671 2006-03-27 2007-03-27 Analyse de données d'expression de variants d'épissage Ceased WO2007126882A2 (fr)

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US78655006P 2006-03-27 2006-03-27
US60/786,550 2006-03-27
US84727806P 2006-09-25 2006-09-25
US60/847,278 2006-09-25
US90067907P 2007-02-08 2007-02-08
US60/900,679 2007-02-08

Publications (2)

Publication Number Publication Date
WO2007126882A2 WO2007126882A2 (fr) 2007-11-08
WO2007126882A3 true WO2007126882A3 (fr) 2008-12-11

Family

ID=38656042

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2007/007671 Ceased WO2007126882A2 (fr) 2006-03-27 2007-03-27 Analyse de données d'expression de variants d'épissage

Country Status (1)

Country Link
WO (1) WO2007126882A2 (fr)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10236078B2 (en) 2008-11-17 2019-03-19 Veracyte, Inc. Methods for processing or analyzing a sample of thyroid tissue
US9495515B1 (en) 2009-12-09 2016-11-15 Veracyte, Inc. Algorithms for disease diagnostics
US9074258B2 (en) 2009-03-04 2015-07-07 Genomedx Biosciences Inc. Compositions and methods for classifying thyroid nodule disease
EP3360978A3 (fr) 2009-05-07 2018-09-26 Veracyte, Inc. Procédés pour le diagnostic d'affections thyroïdiennes
US10446272B2 (en) 2009-12-09 2019-10-15 Veracyte, Inc. Methods and compositions for classification of samples
EP2943591A4 (fr) 2013-01-14 2016-07-20 Cellecta Inc Procédés et compositions pour le profilage d'expression cellulaire unique
US11976329B2 (en) 2013-03-15 2024-05-07 Veracyte, Inc. Methods and systems for detecting usual interstitial pneumonia
US12297505B2 (en) 2014-07-14 2025-05-13 Veracyte, Inc. Algorithms for disease diagnostics
CN114606309A (zh) 2014-11-05 2022-06-10 威拉赛特公司 使用机器学习和高维转录数据的诊断系统和方法
US11217329B1 (en) 2017-06-23 2022-01-04 Veracyte, Inc. Methods and systems for determining biological sample integrity

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6664046B1 (en) * 1999-12-16 2003-12-16 Roche Molecular Systems, Inc. Quantitation of hTERT mRNA expression

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6664046B1 (en) * 1999-12-16 2003-12-16 Roche Molecular Systems, Inc. Quantitation of hTERT mRNA expression

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
HU G.K.: "Predicting Splice Variant from DNA", CHIP EXPRESSION DATA, vol. 11, 2001, pages 1237 - 1245, XP002225643, DOI: doi:10.1101/gr.165501 *

Also Published As

Publication number Publication date
WO2007126882A2 (fr) 2007-11-08

Similar Documents

Publication Publication Date Title
WO2006098772A3 (fr) Systemes et procedes d'optimisation de mesures
BRPI0509132B8 (pt) sensor colorimétrico, arranjo, dispositivo, e, método para detectar a presença ou ausência de um analito
EP2138841B8 (fr) Système et procédé pour la mesure d'un analyte dans un échantillon
EP2002260A4 (fr) Système et procédés hautement sensibles destinés à une analyse de la troponine
WO2007143225A3 (fr) Système et procédé de surveillance d'un analyte
WO2008042760A3 (fr) Méthode et système de mise à jour dynamique de paramètres d'étalonnage d'un détecteur de substances à analyser
WO2007140270A3 (fr) Analyse d'informations récoltées au moyen de plusieurs techniques d'analyse
EP2030011A4 (fr) Système et procédés pour analyser des nanoreporteurs
EP2114241A4 (fr) Procédé et système pour fournir une surveillance d'analyte
EP2150306A4 (fr) Systèmes et procédés de surveillance d'analyte
WO2007112012A3 (fr) Discrimination d'isoformes de protéines et leurs mesures quantitatives
NO20084083L (no) Anordning og fremgangsmate for detektering av fluorescensmerkede biologiske komponenter
WO2008039769A3 (fr) Procédés et dispositifs pour analyser de petites molécules d'arn
WO2008039944A3 (fr) procÉdÉ et dispositif permettant l'insertion d'un dÉtecteur d'analytes
TW200628394A (en) Process control monitors for interferometric modulators
WO2008109878A3 (fr) Dispositif de test
FI20060952A0 (fi) Menetelmä ja laitteisto siirtolinjan aika-auleen heijastustestiä varten
WO2006023769A3 (fr) Determination de qualite de donnees et/ou d'aneusomie segmentaire l'aide d'un systeme informatique
WO2007126444A3 (fr) Surveillance d'analyte
WO2008066584A3 (fr) Dosage rapide de mesure d'analyte
EP2047268A4 (fr) Système indicateur pour déterminer la concentration d'analyte
FI20041323L (fi) Analysoija, järjestelmä ja menetelmä toivotun käyttäjäjoukon määrittämiseksi
EP2339972A4 (fr) Systèmes et procédés pour piloter un instrument à travers un os
EP1890114A4 (fr) Instrument de mesure de débit et système de commande de débit idoine
DE602006002251D1 (de) Messvorrichtungsanzeigevorrichtung, anzeigeverfahren dafür und damit ausgestattetes hybridfahrzeug

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 07754224

Country of ref document: EP

Kind code of ref document: A2

NENP Non-entry into the national phase

Ref country code: DE

32PN Ep: public notification in the ep bulletin as address of the adressee cannot be established

Free format text: NOTING OF LOSS OF RIGHTS PURSUANT TO RULE 112(1) EPC, EPO FORM 1205A DATED 20.01.2009

122 Ep: pct application non-entry in european phase

Ref document number: 07754224

Country of ref document: EP

Kind code of ref document: A2