WO2023274183A1 - Cd16抗体及其应用 - Google Patents
Cd16抗体及其应用 Download PDFInfo
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- WO2023274183A1 WO2023274183A1 PCT/CN2022/101713 CN2022101713W WO2023274183A1 WO 2023274183 A1 WO2023274183 A1 WO 2023274183A1 CN 2022101713 W CN2022101713 W CN 2022101713W WO 2023274183 A1 WO2023274183 A1 WO 2023274183A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/283—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against Fc-receptors, e.g. CD16, CD32, CD64
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- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/10—Libraries containing peptides or polypeptides, or derivatives thereof
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/10—Cells modified by introduction of foreign genetic material
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6854—Immunoglobulins
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- C07—ORGANIC CHEMISTRY
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- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/33—Crossreactivity, e.g. for species or epitope, or lack of said crossreactivity
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
- C07K2317/62—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
- C07K2317/622—Single chain antibody (scFv)
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
- C07K2317/64—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising a combination of variable region and constant region components
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
- C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
- G01N2333/705—Assays involving receptors, cell surface antigens or cell surface determinants
- G01N2333/70503—Immunoglobulin superfamily, e.g. VCAMs, PECAM, LFA-3
- G01N2333/70535—Fc-receptors, e.g. CD16, CD32, CD64 (CD2314/705F)
Definitions
- the present invention relates to the field of biomedicine, in particular to CD16 antibody and its application.
- NK cells Natural killer cells
- NK cells are a component of the innate immune system, accounting for approximately 5-15% of circulating lymphocytes. Unlike B cells and T cells, NK cells do not express somatically rearranged antigen receptors, but instead express a series of activating and inhibitory receptors, the integration of activating and inhibitory signals from the interaction of ligands and different receptors And the balance determines the state of NK cell activation.
- Activated NK cells kill target cells by similar means as cytotoxic T cells, namely by cytolytic granules containing perforin and granzymes and by the death receptor pathway.
- Activated NK cells also secrete inflammatory cytokines such as IFN- ⁇ and chemokines that promote the recruitment of other inflammatory cells to target tissues.
- NK cells do not require antigen priming and recognize targets by activating receptors in the absence of MHC recognition.
- MHC I Class I HLA
- the human IgG Fc receptor CD16 (Fc ⁇ RIII) consists of two subtypes (CD16a/Fc ⁇ RIIIa and CD16b/Fc ⁇ RIIIb), encoded by two highly homologous genes.
- CD16b (Fc ⁇ RIIIb), mainly expressed on neutrophils, is a GPI-anchored glycoprotein that lacks the intracellular signal transduction domain.
- CD16b There are gene polymorphisms in CD16b, which can produce three allotypes, namely NA1, NA2 and SH.
- CD16a is a low-affinity receptor for human IgG Fc, a single transmembrane protein that is involved in antibody-dependent cellular cytotoxicity (ADCC) and triggers specific lysis of target cells by natural killer (NK) cells.
- ADCC antibody-dependent cellular cytotoxicity
- ADCC is one of the dominant mechanisms of cytotoxicity by Fc ⁇ R-expressing effector cells to clear tumor cells.
- a single nucleotide substitution (SNP) from G to T at position 559 of the CD16a gene in the cDNA of the CD16a gene resulted in two distinct Fc ⁇ RIIIa allotypes: at position 158 of the amino acid sequence, one encoded as valine Acid (V), the other encoded as phenylalanine (F).
- V valine Acid
- F phenylalanine
- the presence of valine (V/V or V/F) enhances the binding affinity of NK cells for IgG1 or IgG3 antibodies compared to homozygous phenylalanine genotypes (F/F), resulting in higher NK Levels of cell-mediated ADCC.
- NK cell-mediated ADCC is one of the mechanisms of anticancer effects of commonly used antibodies such as rituximab, trastuzumab, and cetuximab.
- NK cells The ADCC function of NK cells has received high attention in antibody immunotherapy.
- Bispecific antibodies that simultaneously recruit the ADCC receptor CD16a and recognize target antigens have been developed. Different formats of these bispecific antibodies are currently undergoing preclinical and clinical research, such as GTB-3550 targeting CD33 and CD16, AFM24 targeting EGFR and CD16, and AFM26 targeting BCMA and CD16 are currently in clinical research, these
- the CD16 antibody part used in the antibody is from natural human phage display library.
- Nanobody (Nb) is a genetically engineered antibody containing only a single domain. In 1993, Belgian scientist Hamers-Casterman C found a natural heavy chain antibody in camel blood that only contained heavy chains but no light chains.
- nanobody technology is used to develop a CD16-targeted therapy that specifically recognizes CD16a and has comparable high binding affinity to the two allotypes of CD16a, relatively low binding activity to CD16b, and is not affected by human immunoglobulin in serum Sexual antibodies have broad prospects.
- the invention provides an antibody or antigen-binding fragment specifically binding to CD16, a multispecific antigen-binding molecule, a chimeric antigen receptor, an immune effector cell, a nucleic acid fragment, a vector, a host cell, a pharmaceutical composition, a kit, and a preparation method and its application in treating diseases and detecting CD16.
- the present invention discloses an antibody or antigen-binding fragment that specifically binds CD16, said antibody or antigen-binding fragment comprising CDR1, CDR2 and CDR3, said CDR1, CDR2 and CDR3 respectively comprising a group selected from SEQ ID NO: HCDR1, HCDR2 and HCDR3 of the VHH domain shown in any one of 21-34 or SEQ ID NO: 90-101.
- the HCDR1, HCDR2 and HCDR3 are determined according to the Kabat, Chothia or IMGT numbering system; optionally, the HCDR1, HCDR2 and HCDR3 are selected from Table 9; optionally, the HCDR1 is selected from SEQ ID NO: 49, 52, 54, 57, 60, 62, 65, 66, 67, 68, 70, 72, 78, 79, 80, 81 or 88;
- the HCDR2 is selected from SEQ ID NO : 50, 53, 55, 58, 61, 63, 69, 71, 73, 75, 76, 77, 82 or 85;
- the HCDR3 is selected from SEQ ID NO: 51, 56, 59, 64, 74, 83, 84, 86 or 87;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 52, 53, 51 or SEQ ID NO: 54, 55, 56 according to the Kabat, Chothia or IMGT numbering system ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 57, 58, 59, SEQ ID NO: 60, 61, 59 or SEQ ID NO: 62, 63, 64 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 65, 53, 51 or SEQ ID NO: 66, 55, 56 according to the Kabat, Chothia or IMGT numbering system ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 67, 53, 51 or SEQ ID NO: 68, 55, 56 according to the Kabat, Chothia or IMGT numbering system ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 69, 51, SEQ ID NO: 70, 71, 51 or SEQ ID NO: 72, 73, 74 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 75, 51, SEQ ID NO: 52, 76, 51 or SEQ ID NO: 54, 77, 56 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 78, 53, 51 or SEQ ID NO: 79, 55, 56 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 80, 53, 51 or SEQ ID NO: 81, 55, 56 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 69, 51, SEQ ID NO: 65, 71, 51 or SEQ ID NO: 66, 73, 56 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 57, 82, 83, SEQ ID NO: 60, 61, 83 or SEQ ID NO: 62, 63, 84 according to the Kabat, Chothia or IMGT numbering system ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 57, 85, 86, SEQ ID NO: 60, 61, 86 or SEQ ID NO: 62, 63, 87 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 57, 82, 86, SEQ ID NO: 60, 61, 86 or SEQ ID NO: 62, 63, 87 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 88, 82, 83, SEQ ID NO: 60, 61, 83 or SEQ ID NO: 62, 63, 84 ;
- said HCDR1, HCDR2 and HCDR3 are selected from SEQ ID NO: 49, 50, 51, SEQ ID NO: 80, 53, 51 or SEQ ID NO: 81, 55, 56 ;
- the CDR1, CDR2 and/or CDR3 comprise an amino acid sequence in which 1, 2 or 3 mutations occur on the HCDR1, HCDR2 and/or HCDR3; the mutations may be selected from insertion , deletion and/or substitution, and the substitution is preferably a conservative amino acid substitution.
- said CDR1, CDR2 and/or CDR3 comprise at least 80, 85%, 90%, 91%, 92%, 93%, 94% compared with said HCDR1, HCDR2 and/or HCDR3 %, 95%, 96%, 97%, 98%, 99% or 100% identical sequences.
- said antibody or antigen-binding fragment comprises a single domain antibody comprising said CDR1, CDR2 and CDR3.
- the single domain antibody comprises a sequence selected from any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101;
- the single domain antibody comprises at most 20, 19, 18, 17, 16 sequences compared with any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101. 1, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 mutated sequence,
- the mutation can be selected from insertion, deletion and/or substitution, and the substitution is preferably a conservative amino acid substitution;
- the single domain antibody comprises at least 80, 85%, 90%, 91%, 92% of the sequence shown in any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101. , 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identical sequences.
- the antibody comprises the FR region in the VHH domain shown in any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101;
- the antibody comprises at most 15, 14, 13, 12 FR regions in the VHH domain shown in any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101.
- the antibody comprises at least 80%, 85%, 90%, 91% of the FR region in the VHH domain shown in any one of SEQ ID NO: 21-34 or SEQ ID NO: 90-101. %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical sequences.
- the antibody or antigen-binding fragment is: (1) a chimeric antibody or a fragment thereof; (2) a humanized antibody or a fragment thereof; or (3) a fully human antibody or a fragment thereof.
- the antibody or antigen-binding fragment comprises or does not comprise an antibody heavy chain constant region; alternatively, the antibody heavy chain constant region may be selected from human, alpaca, mouse, rat, Rabbit or sheep; alternatively, the heavy chain constant region of the antibody may be selected from IgG, IgM, IgA, IgE or IgD, and the IgG may be selected from IgG1, IgG2, IgG3 or IgG4; alternatively, the heavy chain The constant region can be selected from an Fc region, a CH3 region or a complete heavy chain constant region.
- the heavy chain constant region is a human Fc region, preferably comprising any one of SEQ ID NO: 35-48 or SEQ ID NO: 102-113.
- the sequence shown in item; preferably, the antibody or antigen-binding fragment is a heavy chain antibody.
- the antibody or antigen-binding fragment is also coupled with a therapeutic agent or a tracer; preferably, the therapeutic agent is selected from radioisotopes, chemotherapeutics or immunomodulators, and the tracer selected from radiological contrast agents, paramagnetic ions, metals, fluorescent labels, chemiluminescent labels, ultrasound contrast agents and photosensitizers.
- the therapeutic agent is selected from radioisotopes, chemotherapeutics or immunomodulators
- the tracer selected from radiological contrast agents, paramagnetic ions, metals, fluorescent labels, chemiluminescent labels, ultrasound contrast agents and photosensitizers.
- the antibody or antigen-binding fragment specifically binds to human CD16, monkey CD16 and/or mouse CD16, preferably, the KD of the antibody or antigen-binding fragment to human CD16 and/or monkey CD16 is less than 1E-6M, 1E-7M, 2E-7M, 3E-7M, 4E-7M, 5E-7M, 6E-7M, 8E-7M, 9E-7M, 1E-8M, 2E-8M, 3E-8M, 4E- 8M, 5E-8M, 6E-8M, 8E-8M, 9E-8M, or 1E-9M.
- the antibody or antigen-binding fragment binds to CD16A, does not bind to CD16B or binds weakly to CD16B, and the CD16B is selected from CD16B(NA1), CD16B(NA2) or CD16B(SH).
- the antibody or antigen-binding fragment is also linked with other functional molecules, preferably, the other functional molecules can be selected from one or more of the following: signal peptides, protein tags, cell factors, angiogenesis inhibitors, or immune checkpoint inhibitors.
- the cytokine can be IL2, IL-6, IL-12, IL-15, IL-21, IFN or TNF ⁇ ;
- the angiogenesis inhibitor can be endostatin;
- the The immune checkpoint inhibitor can be SIRP ⁇ .
- the present invention also discloses a multispecific antigen-binding molecule, which comprises the aforementioned antibody or antigen-binding fragment, and an antigen-binding molecule that binds to an antigen other than CD16, or binds to the aforementioned Different CD16 epitopes of antibodies or antigen-binding fragments; optionally, other antigens other than CD16 can be selected from: CD137, CD258, PD-1, PD-L1, 4-1BB, CD40, CD64, EGFR, VEGF, HER2, HER1, HER3, IGF-1R, Phosphatidylserine (Phosphatidylserine, PS), C-Met, BCMA, HSA, GPRC5D, MSLN, blood-brain barrier receptor, GPC3, PSMA, CD33, GD2, ROR1, ROR2, FR ⁇ or Gucy2C;
- said other antigen-binding molecule is an antibody or an antigen-binding fragment
- said multispecific antigen binding molecule may be bispecific, trispecific or tetraspecific;
- the multispecific antigen binding molecule may be bivalent, tetravalent or hexavalent.
- the present invention also discloses an isolated nucleic acid fragment encoding the aforementioned antibody or antigen-binding fragment or multispecific antigen-binding molecule.
- the present invention also discloses a vector, which comprises the aforementioned nucleic acid fragment.
- the present invention also discloses a host cell comprising the aforementioned vector; preferably, the cell is a prokaryotic cell or a eukaryotic cell, such as bacteria (Escherichia coli), fungus (yeast), insect cells or mammalian cells (CHO cell line or 293T cell line).
- the cell is a prokaryotic cell or a eukaryotic cell, such as bacteria (Escherichia coli), fungus (yeast), insect cells or mammalian cells (CHO cell line or 293T cell line).
- the present invention also discloses a method for preparing the aforementioned antibody or antigen-binding fragment or multispecific antigen-binding molecule, the method comprising culturing the aforementioned cell, and isolating the antibody, antigen-binding fragment or multispecific antigen-binding molecule expressed by the cell. Specific antigen-binding molecules.
- the present invention also discloses a pharmaceutical composition, which comprises the aforementioned antibody or antigen-binding fragment, multispecific antigen-binding molecule, nucleic acid fragment, carrier, or product prepared according to the aforementioned method;
- the pharmaceutical composition further comprises a pharmaceutically acceptable carrier, diluent or adjuvant; optionally, the pharmaceutical composition further comprises an additional antineoplastic agent.
- the present invention also discloses a method for treating tumors or cancers, inflammatory diseases or allergic diseases, the method comprising administering to a subject an effective amount of the aforementioned antibody or antigen-binding fragment, multispecific antigen Binding molecules, nucleic acid fragments, vectors, products or pharmaceutical compositions prepared according to the aforementioned methods; preferably, the tumor or cancer is selected from non-Hodgkin's lymphoma, chronic lymphocytic leukemia, Hodgkin's disease, minimal residual disease, metastases.
- the present invention also discloses that the aforementioned antibodies or antigen-binding fragments, multispecific antigen-binding molecules, nucleic acid fragments, vectors, products or pharmaceutical compositions prepared according to the aforementioned methods are used in the preparation and treatment of tumors or cancers, inflammatory diseases or Use in allergy medicine; preferably, the tumor or cancer is selected from non-Hodgkin's lymphoma, chronic lymphocytic leukemia, Hodgkin's disease, minimal residual disease, metastases.
- the present invention also discloses a kit comprising the aforementioned antibody or antigen-binding fragment, multispecific antigen-binding molecule, nucleic acid fragment, carrier, product or pharmaceutical composition prepared according to the aforementioned method .
- the present invention also discloses a method for detecting the expression of CD16 in a biological sample, the method comprising making the biological A chemical sample is contacted with the antibody or antigen-binding fragment; preferably, the method further comprises detecting the formation of the complex, indicating the presence or expression level of CD16 in the sample.
- the present invention also discloses the use of the aforementioned antibodies or antigen-binding fragments in the preparation of CD16 detection reagents.
- CD16 refers to receptor type III for the Fc portion of immunoglobulin G (Fc ⁇ RIII), a group of differentiated molecules found on the surface of natural killer cells, neutrophils, monocytes, and macrophages.
- CD16 has been identified as Fc receptors Fc ⁇ RIIIa (CD16a) and Fc ⁇ RIIIb (CD16b), involved in signal transduction.
- Human Fc ⁇ RIIIA (CD16a) is a low-affinity receptor that can bind to IgG Fc expressed on human CD56 low-expressing natural killer (NK) cells, monocyte subsets, dendritic cells and rare T cells.
- CD16b Human Fc ⁇ RIIIB (CD16b), encoded by different genes and mainly expressed in neutrophils, is a GPI-anchored glycoprotein that lacks the intracellular signal transduction domain.
- CD16a is a type I membrane glycoprotein with a single transmembrane (TM) domain and a short cytoplasmic tail, whose expression on the cell surface depends on binding to the signaling molecules CD247 (TCR ⁇ ) and/or Fc- ⁇ RI- ⁇ , once they interact, they induce a series of signal transductions, leading to cytokine release and cell killing activity.
- KD equilibrium dissociation constant
- high affinity generally means having a KD of about 10 ⁇ 6 M or lower, 10 ⁇ 7 M or lower, about 10 ⁇ 8 M or lower, about 10 ⁇ 9 M or lower.
- the equilibrium dissociation constant KD can be measured by methods known in the art, such as surface plasmon resonance (eg Biacore) or equilibrium dialysis.
- antigen binding molecule is used herein in the broadest sense to refer to a molecule that specifically binds an antigen.
- antigen binding molecules include, but are not limited to, antibodies or antibody mimetics.
- Antibody mimic refers to an organic compound or binding domain that can specifically bind to an antigen, but has nothing to do with the structure of an antibody.
- antibody mimics include but are not limited to affibody, affitin, affilin, designed ankyrin repeat proteins (DARPins), aptamers or Kunitz-type domain peptides.
- antibody is used herein in the broadest sense to refer to a polypeptide comprising sufficient sequence from the variable region of an immunoglobulin heavy chain and/or sufficient sequence from the variable region of an immunoglobulin light chain to be capable of specifically binding to an antigen or peptide combinations.
- Antibody herein encompasses various forms and various structures as long as they exhibit the desired antigen-binding activity.
- Antibody herein includes alternative protein scaffolds or artificial scaffolds with grafted complementarity determining regions (CDRs) or CDR derivatives. Such scaffolds include antibody-derived scaffolds comprising mutations introduced, eg, to stabilize the three-dimensional structure of the antibody, as well as fully synthetic scaffolds comprising, eg, biocompatible polymers.
- Such scaffolds may also include non-antibody-derived scaffolds, such as scaffold proteins known in the art to be useful for grafting CDRs, including but not limited to tenascin, fibronectin, peptide aptamers, and the like.
- antibody includes whole antibodies and any antigen-binding fragment (ie, "antigen-binding portion") or single chains thereof.
- Antibody refers to a glycoprotein comprising at least two heavy (H) chains and two light (L) chains interconnected by disulfide bonds, or an antigen-binding portion thereof.
- Each heavy chain is composed of a heavy chain variable region (abbreviated herein as VH) and a heavy chain constant region.
- the heavy chain constant region consists of three domains, CH1, CH2 and CH3.
- Each light chain is composed of a light chain variable region (abbreviated herein as VL) and a light chain constant region.
- the light chain constant region consists of one domain, CL.
- the VH and VL regions can be further subdivided into hypervariable regions, called complementarity determining regions (CDRs), interspersed in more conserved regions called framework regions (FRs).
- CDRs complementarity determining regions
- FRs framework regions
- Each VH and VL consists of three CDRs and four FRs, which are arranged in the following order from the amino terminal to the carboxyl terminal: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4.
- the variable regions of the heavy and light chains contain binding domains that can interact with antigen.
- the constant regions of the antibodies may mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (eg, effector cells) and the first component (Clq) of the classical complement system.
- immunoglobulins can be divided into five classes, or isotypes of immunoglobulins, namely IgM, IgD, IgG, IgA, and IgE, and their corresponding heavy chains are respectively the ⁇ chain and the delta chain , ⁇ chain, ⁇ chain and ⁇ chain.
- IgM, IgD, IgG, IgA, and IgE immunoglobulins
- their corresponding heavy chains are respectively the ⁇ chain and the delta chain , ⁇ chain, ⁇ chain and ⁇ chain.
- the same class of Ig can be divided into different subclasses according to the amino acid composition of its hinge region and the number and position of heavy chain disulfide bonds.
- IgG can be divided into IgG1, IgG2, IgG3, IgG4, and IgA can be divided into IgA1 and IgA.
- Light chains are classified as either kappa chains or lambda chains by difference in the constant region.
- Each of the five Ig classes can have either a kappa chain or a lambda chain.
- Antibody herein also includes antibodies that do not comprise light chains, for example, antibodies produced from Camelus dromedarius, Camelus bactrianus, Lama glama, Lama guanicoe and alpaca ( Heavy-chain antibodies (HCAbs) produced by camelids such as Vicugna pacos) and immunoglobulin new antigen receptors (Ig new antigen receptors, IgNAR) found in cartilaginous fishes such as sharks.
- HCAbs Heavy-chain antibodies
- Ig new antigen receptors Ig new antigen receptors, IgNAR
- antibody herein may be derived from any animal, including but not limited to humans and non-human animals selected from primates, mammals, rodents and vertebrates, such as camelids, large sheep Camels, protozoans, alpacas, sheep, rabbits, mice, rats or cartilaginous fishes (eg sharks).
- heavy chain antibody herein refers to an antibody that lacks the light chains of conventional antibodies.
- the term specifically includes, but is not limited to, homodimeric antibodies comprising a VH antigen binding domain and CH2 and CH3 constant domains in the absence of a CH1 domain.
- nanobody in this paper refers to the natural heavy chain antibody lacking the light chain in camels, etc., and its variable region can be cloned to obtain a single domain antibody consisting of only the variable region of the heavy chain, also known as VHH (Variable domain of heavy chain of heavy chain antibody), which is the smallest functional antigen-binding fragment.
- VHH Very domain of heavy chain of heavy chain antibody
- VHH domain and “nanobody” and “single domain antibody” (sdAb) herein have the same meaning and are used interchangeably, referring to the variable region of a cloned heavy chain antibody, constructed A single domain antibody consisting of only one heavy chain variable region, which is the smallest fully functional antigen-binding fragment.
- the variable region of the heavy chain of the antibody is cloned to construct a single domain antibody consisting of only one heavy chain variable region.
- multispecific herein refers to the ability of an antibody or antigen-binding fragment to bind, for example, different antigens or at least two different epitopes on the same antigen.
- terms such as “bispecific”, “trispecific”, “tetraspecific” and the like refer to the number of different epitopes to which an antibody can bind.
- conventional monospecific IgG-type antibodies have two identical antigen-binding sites (paratopes) and thus can only bind the same epitope (rather than bind different epitopes).
- multispecific antibodies have at least two different types of paratopes/binding sites and thus can bind at least two different epitopes.
- complementarity determining region refers to the antigen binding site of an antibody.
- a single “specificity” may refer to one, two, three or more than three identical CDRs in a single antibody (the actual number of CDRs/binding sites in a single antibody molecule is referred to as " price").
- a single native IgG antibody is monospecific and bivalent because it has two identical paratopes.
- a multispecific antibody comprises at least two (different) complementarity determining regions/binding sites.
- the term “multispecific antibody” refers to an antibody that has more than one paratope and has the ability to bind two or more different epitopes.
- multispecific antibody includes in particular bispecific antibodies as defined above, but generally also proteins, e.g. antibodies, scaffolds which specifically bind three or more than three different epitopes, i.e. having three or more Antibodies with more than three paratopes/binding sites.
- valence herein refers to the presence of a defined number of binding sites in an antibody/antigen binding molecule. Accordingly, the terms “monovalent”, “bivalent”, “tetravalent” and “hexavalent” denote one binding site, two binding sites, four binding sites and six binding sites in an antibody/antigen binding molecule, respectively. point of existence.
- full-length antibody intact antibody
- intact antibody intact antibody
- Antigen-binding fragment and “antibody fragment” are used interchangeably herein, and do not possess the full structure of an intact antibody, but only include partial or partial variants of an intact antibody that possess the ability to bind Antigen capacity.
- exemplary, "antigen-binding fragment” or “antibody fragment” herein includes, but is not limited to, Fab, F(ab')2, Fab', Fab'-SH, Fd, Fv, scFv, diabody and single domain Antibody.
- chimeric antibody refers to an antibody that has variable sequences derived from immunoglobulins of one source organism (such as rat, mouse, rabbit or alpaca) and derived from a different organism (such as human ) of the immunoglobulin constant region.
- Methods for producing chimeric antibodies are known in the art. See, e.g., Morrison, 1985, Science 229(4719):1202-1207. Transfectomas Provide Novel Chimeric Antibodies; Gillies et al., J Immunol Methods. 1989 Dec 20; 125(1-2):191-202; above incorporated by reference Incorporated into this article. See also patent US5807715A.
- humanized antibody herein refers to a genetically engineered non-human antibody whose amino acid sequence has been modified to increase sequence homology with a human antibody.
- all or part of the CDR region of a humanized antibody is derived from a non-human antibody (donor antibody), and all or part of the non-CDR region (for example, variable region FR and/or constant region) is derived from a human Immunoglobulin (receptor antibody).
- Humanized antibodies usually retain or partially retain the expected properties of the donor antibody, including but not limited to, antigen specificity, affinity, reactivity, ability to enhance immune cell activity or enhance immune response, etc.
- Fully human antibody refers to antibodies having variable regions in which both the FRs and CDRs are derived from human germline immunoglobulin sequences. Furthermore, if the antibody comprises a constant region, the constant region also is derived from human germline immunoglobulin sequences. Fully human antibodies herein may include amino acid residues not encoded by human germline immunoglobulin sequences (eg, mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo). However, "fully human antibodies” herein do not include antibodies in which CDR sequences derived from the germline of another mammalian species (eg, mouse) have been grafted onto human framework sequences.
- another mammalian species eg, mouse
- variable region herein refers to the region in the heavy or light chain of an antibody that is involved in making the antibody bind to an antigen
- dasheavy chain variable region is used interchangeably with “VH” and “HCVR”
- light chain variable region can be used interchangeably with “VL” and “LCVR”.
- the variable domains of the heavy and light chains of natural antibodies generally have similar structures, and each domain contains four conserved framework regions (FR) and three hypervariable regions (HVR). A single VH or VL domain may be sufficient to confer antigen binding specificity.
- variable domains hypervariable regions
- FR framework regions
- amino acid positions representing the hypervariable regions of an antibody may vary according to the context and various definitions known in the art. Some positions within variable domains can be considered heterozygous hypervariable positions because these positions can be considered within hypervariable regions under one set of criteria (such as IMGT or KABAT) but under a different set of criteria (such as KABAT or IMGT) outside the hypervariable region. One or more of these positions may also be found in extended hypervariable regions.
- the invention includes antibodies comprising modifications in these hybrid hypervariable positions.
- the heavy chain variable region CDR may be abbreviated as HCDR and the light chain variable region may be abbreviated as LCDR.
- the variable domains of the native heavy and light chains each comprise four framework regions predominantly in a sheet configuration, connected by three CDRs (CDR1, CDR2, and CDR3) that form loops connecting the sheets , and in some cases form part of the lamellar structure.
- the CDRs in each chain are held tightly together by the FR regions in the sequence FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4, and together with CDRs from other antibody chains contribute to the formation of the antibody's antigen-binding site.
- CDR CDR
- CDR herein can be marked and defined by methods known in the art, including but not limited to Kabat numbering system, Chothia numbering system or IMGT numbering system, and the tool websites used include but not limited to AbRSA website (http://cao.labshare. cn/AbRSA/cdrs.php), abYsis website (www.abysis.org/abysis/sequence_input/key_annotation/key_annotation.cgi) and IMGT website (http://www.imgt.org/3Dstructure-DB/cgi/DomainGapAlign. cgi#results).
- CDRs herein include overlaps and subsets of amino acid residues defined in different ways.
- Kabat numbering system herein generally refers to the immunoglobulin alignment and numbering system proposed by Elvin A. Kabat (see, e.g., Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md., 1991).
- Chothia numbering system generally refers to the immunoglobulin numbering system proposed by Chothia et al., which is a classical rule for identifying the boundaries of CDR regions based on the location of structural loop regions (see, e.g., Chothia, C., & Lesk, A.M. (1987). Canonical structures for the hypervariable regions of immunoglobulins. Journal of molecular biology, 196(4), 901-917.).
- IMGT numbering system herein generally refers to the numbering system based on the international ImMunoGeneTics information system (The international ImMunoGeneTics information system (IMGT)) initiated by Lefranc et al., see Lefranc, M.P., Pommié, C., Ruiz, M.,Giudicelli,V.,Foulquier,E.,Truong,L.,...& Lefranc,G.(2003).IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains.Developmental & Comparative Immunology, 27(1), 55-77.
- IMGT international ImMunoGeneTics information system
- heavy chain constant region herein refers to the carboxy-terminal portion of the heavy chain of an antibody that is not directly involved in binding the antibody to an antigen, but exhibits effector functions, such as interaction with Fc receptors, which are relative to the antibody's available Variable domains have more conserved amino acid sequences.
- the “heavy chain constant region” may be selected from a CH1 domain, a hinge region, a CH2 domain, a CH3 domain, or variants or fragments thereof.
- “Heavy chain constant region” includes "full-length heavy chain constant region” and “heavy chain constant region fragment", the former has a structure substantially similar to that of a natural antibody constant region, while the latter only includes “full-length heavy chain constant region” part".
- a typical "full-length antibody heavy chain constant region” consists of a CH1 domain-hinge region-CH2 domain-CH3 domain; when the antibody is IgE, it also includes a CH4 domain; when the antibody is a heavy chain In the case of an antibody, it does not include a CH1 domain.
- typical "heavy chain constant region fragments" can be selected from Fc or CH3 domains.
- light chain constant region refers to the carboxy-terminal part of the antibody light chain, which is not directly involved in the binding of the antibody to the antigen, and the light chain constant region can be selected from a constant kappa domain or a constant lambda domain.
- Fc region is used herein to define the C-terminal region of an antibody heavy chain that contains at least a portion of the constant region.
- the term includes native sequence Fc regions and variant Fc regions.
- a human IgG heavy chain Fc region can extend from Cys226 or Pro230 to the carboxyl terminus of the heavy chain.
- antibodies produced by host cells may undergo post-translational cleavage whereby one or more, especially one or two amino acids are excised from the C-terminus of the heavy chain.
- an antibody produced by a host cell by expression of a specific nucleic acid molecule encoding a full-length heavy chain may include the full-length heavy chain, or it may include cleavage variants of the full-length heavy chain.
- the last two C-terminal amino acids of the heavy chain are glycine (G446) and lysine (K447, numbering according to the Kabat EU index).
- the C-terminal lysine (Lys447), or the C-terminal glycine (Gly446) and lysine (Lys447) of the Fc region may or may not be present.
- the IgG Fc region includes IgG CH2 and IgG CH3 domains, optionally, on this basis, it may also include a complete or partial hinge region, but does not include a CH1 domain.
- the "CH2 domain" of a human IgG Fc region generally extends from an amino acid residue at about position 231 to an amino acid residue at about position 340.
- the carbohydrate chain is attached to the CH2 domain.
- the CH2 domain herein may be a native sequence CH2 domain or a variant CH2 domain.
- a "CH3 domain” comprises the stretch of residues in the Fc region that is C-terminal to the CH2 domain (ie, from the amino acid residue at about position 341 to the amino acid residue at about position 447 of IgG).
- the CH3 region herein may be a native sequence CH3 domain or a variant CH3 domain (e.g.
- the numbering of amino acid residues in the Fc region or constant region is according to the EU numbering system, also known as the EU index, as in Kabat et al., Sequences of Proteins of Immunological Interest, 5 th Ed. Public Health Service , National Institutes of Health, Bethesda, MD, 1991 described.
- Fc variant herein refers to changes in the structure or function of Fc caused by one or more amino acid substitutions, insertions or deletion mutations at appropriate positions on the Fc.
- Interaction between Fc variants refers to the space-filling effect, electrostatic guidance, hydrogen bond interaction, hydrophobic interaction, etc. between Fc variants designed by mutation. Interactions between Fc variants contribute to the formation of stable heterodimeric proteins.
- a preferred mutation design is a "Knob-into-Hole” style mutation design.
- Fc variants have been widely used in the field to prepare bispecific antibodies or heterodimeric Fc fusion proteins. Representative ones are Cater et al. (Ridgway, J.B., Presta, L.G., & Carter, P. (1996). 'Knobs-into-holes' engineering of antibody CH3domains for heavy chain heterodimerization. Protein Engineering, Design and Selection, 9( 7), 617-621.) The "Knob-into-Hole" form proposed; Amgen's technicians use electrostatic guidance (Electrostatic Steering) to form a heterodimer form containing Fc (US 20100286374A1); Jonathan H.Davis et al.
- SEED bodies fusion proteins based on strand-exchange engineered domain (SEED) CH3heterodimers in an Fc analogue platform for asymmetric binders or immunofusions and bispecific antibodies.
- the Knob/Hole structure on the Fc variant fragments of the present invention means that the two Fc fragments are mutated respectively, and can be combined in a "Knob-into-Hole" form after the mutations. It is preferred to use the "knob-into-hole" model of Cater et al. to carry out site mutation modification on the Fc region, so that the obtained first Fc variant and the second Fc variant can be in the form of "knob-into-hole” Combine together to form heterodimers.
- the selection of particular immunoglobulin Fc regions from particular immunoglobulin classes and subclasses is within the purview of those skilled in the art.
- the Fc region of human antibody IgG1, IgG2, IgG3, IgG4 is preferred, and the Fc region of human antibody IgG1 is more preferred.
- One of the first Fc variant or the second Fc variant is randomly selected for knob mutation and the other for hole mutation.
- amino acid herein generally refers to amino acids that belong to the same class or have similar characteristics (eg, charge, side chain size, hydrophobicity, hydrophilicity, backbone conformation, and rigidity).
- amino acids in each of the following groups belong to each other's conservative amino acid residues, and the substitution of amino acid residues in the group belongs to the conservative amino acid substitution:
- identity may be calculated by aligning said sequences for optimal comparison purposes in order to determine the percent "identity" of two amino acid sequences or two nucleic acid sequences (for example, may be optimal alignment to introduce gaps in one or both of the first and second amino acid sequences or nucleic acid sequences or non-homologous sequences may be discarded for comparison purposes).
- the amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position.
- the percent identity between two sequences will vary with the number of identical positions shared by the sequences, taking into account the number of gaps and the length of each gap that need to be introduced to optimally align the two sequences.
- the comparison of sequences and the calculation of percent identity between two sequences can be accomplished using a mathematical algorithm. For example, using the Needlema and Wunsch algorithm in the GAP program that has been integrated into the GCG software package (available at www.gcg.com), using the Blossum 62 matrix or the PAM250 matrix and gap weights 16, 14, 12, 10, 8, 6 or 4 and a length weight of 1, 2, 3, 4, 5 or 6 to determine the percent identity between two amino acid sequences.
- the GAP program in the GCG software package (available at www.gcg.com), using the NWSgapdna.CMP matrix with gap weights of 40, 50, 60, 70, or 80 and length weights of 1, 2, 3, 4, 5 or 6, determining the percent identity between two nucleotide sequences.
- a particularly preferred parameter set (and one that should be used unless otherwise stated) is the Blossum62 scoring matrix with a gap penalty of 12, a gap extension penalty of 4, and a frameshift gap penalty of 5. It is also possible to use the PAM120 weighted remainder table, a gap length penalty of 12, and a gap penalty of 4, using the E. Meyers and W. Miller algorithm that has been incorporated into the ALIGN program (version 2.0) to determine the difference between two amino acid sequences or nucleotide sequences. The percent identity between.
- nucleic acid and protein sequences described herein may further be used as "query sequences" to perform searches against public databases, eg to identify other family member sequences or related sequences.
- search sequences For example, Altschul, SF, Gish, W., Miller, W., Myers, EW, & Lipman, DJ (1990). Basic local alignment search tool. Journal of molecular biology, 215(3), 403-410.
- the NBLAST and XBLAST programs (version 2.0) of ® perform such searches.
- Gapped BLAST and PSI-BLAST a new generation of protein database search programs. Nucleic acids research, 25(17), 3389 Use Gapped BLAST as described in -3402.
- the default parameters of the respective programs eg, XBLAST and NBLAST
- chimeric antigen receptor herein refers to an artificial cell surface receptor engineered to be expressed on immune effector cells and to specifically bind an antigen, comprising at least (1) an extracellular antigen-binding domain, such as an antibody The heavy chain variable region and/or the light chain variable region, (2) the transmembrane domain that anchors the CAR into immune effector cells, and (3) the intracellular signaling domain.
- CARs are able to redirect T cells and other immune effector cells to a target of choice, such as cancer cells, in a non-MHC-restricted manner using an extracellular antigen-binding domain.
- nucleic acid includes any compound and/or substance comprising a polymer of nucleotides.
- Each nucleotide consists of a base, especially a purine or pyrimidine base (i.e. cytosine (C), guanine (G), adenine (A), thymine (T) or uracil (U)), a sugar (i.e. deoxyribose or ribose) and phosphate groups.
- cytosine C
- G guanine
- A adenine
- T thymine
- U uracil
- nucleic acid molecules are described by a sequence of bases, whereby the bases represent the primary structure (linear structure) of the nucleic acid molecule.
- the sequence of bases is usually expressed 5' to 3'.
- nucleic acid molecule encompasses deoxyribonucleic acid (DNA), including for example complementary DNA (cDNA) and genomic DNA, ribonucleic acid (RNA), especially messenger RNA (mRNA), synthetic forms of DNA or RNA, and synthetic forms of DNA or RNA comprising both Mixed polymers of one or more of these molecules.
- Nucleic acid molecules can be linear or circular.
- nucleic acid molecule includes both sense and antisense strands, as well as single- and double-stranded forms.
- nucleic acid molecules described herein may contain naturally occurring or non-naturally occurring nucleotides.
- nucleic acid molecules also encompass DNA and RNA molecules suitable as vectors for direct expression of antibodies of the invention in vitro and/or in vivo, for example in a host or patient.
- DNA eg cDNA
- RNA eg mRNA
- mRNA can be chemically modified to enhance the stability of the RNA vector and/or the expression of the encoded molecule, so that the mRNA can be injected into a subject to produce antibodies in vivo (see, e.g., Stadler, CR, H., Celik, L., Hebich, B., Roth, AS, Roth, RP,... & Sahin, U. (2017). Elimination of large tumors in mice by mRNA-encoded bispecific antibodies. Nature medicine, 23 (7), 815-817. or EP2101823B1).
- isolated nucleic acid refers to a nucleic acid molecule that has been separated from components of its natural environment.
- An isolated nucleic acid includes a nucleic acid molecule contained in a cell that normally contains the nucleic acid molecule, but which is present extrachromosomally or at a chromosomal location other than its natural chromosomal location.
- vector refers to a nucleic acid molecule capable of amplifying another nucleic acid to which it has been linked.
- the term includes vectors that are self-replicating nucleic acid structures as well as vectors that integrate into the genome of a host cell into which the vector has been introduced.
- Certain vectors are capable of directing the expression of nucleic acids to which they are operably linked. Such vectors are referred to herein as "expression vectors”.
- host cell herein refers to a cell into which exogenous nucleic acid has been introduced, including the progeny of such a cell.
- Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and progeny derived therefrom, regardless of the number of passages. Progeny may not be identical to the parental cell in nucleic acid content, but may contain mutations. Mutant progeny having the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
- the term "pharmaceutical composition” refers to a preparation that is present in a form that permits the biological activity of the active ingredients contained therein to be effective and that does not contain substances that are unacceptably toxic to the subject to which the pharmaceutical composition is administered. additional ingredients.
- the term "pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, coatings, surfactants, antioxidants, preservatives (e.g., antibacterial, antifungal), isotonic agents, absorption delaying agents, Agents, salts, preservatives, drug stabilizers, binders, excipients, disintegrants, lubricants, sweeteners, flavoring agents, dyes, etc., and combinations thereof, which are known to those skilled in the art (see For example, Remington's Pharmaceutical Sciences, 18th ed. Mack Printing Company, 1990, pp. 1289-1329). Except in cases of incompatibility with the active ingredient, any conventional carrier is contemplated for use in therapeutic or pharmaceutical compositions.
- treatment refers to surgical or therapeutic treatment, the purpose of which is to prevent, slow down (reduce) undesired physiological changes or lesions, such as cancers and tumors, in the subject being treated.
- beneficial or desired clinical outcomes include, but are not limited to, alleviation of symptoms, diminished extent of disease, stable disease state (i.e., not worsening), delay or slowing of disease progression, amelioration or palliation of disease state, and remission (whether partial response or complete response), whether detectable or undetectable.
- Those in need of treatment include those already with the condition or disease as well as those prone to have the condition or disease or those in which the condition or disease is to be prevented.
- slow down lessen, weaken, moderate, alleviate, etc., the meaning of eliminate, disappear, not occur, etc. is also included.
- subject herein refers to an organism receiving treatment for a particular disease or condition as described herein.
- a “subject” includes a mammal, such as a human, a primate (eg, monkey) or a non-primate mammal, receiving treatment for a disease or disorder.
- an effective amount herein refers to an amount of a therapeutic agent effective to prevent or alleviate a disease condition or the progression of the disease when administered alone or in combination with another therapeutic agent to a cell, tissue or subject.
- Effective amount also refers to an amount of a compound sufficient to relieve symptoms, eg, treat, cure, prevent or alleviate the associated medical condition, or to increase the rate of treatment, cure, prevent or alleviate such condition.
- a therapeutically effective dose refers to that ingredient alone.
- a therapeutically effective dose refers to the combined amounts of the active ingredients that produce a therapeutic effect, whether administered in combination, sequentially or simultaneously.
- cancer refers to or describes the physiological condition in mammals typically characterized by unregulated cell growth. Both benign and malignant cancers are included in this definition.
- tumor or “neoplastic” herein refers to all neoplastic cell growth and proliferation, whether malignant or benign, and to all pre-cancerous and cancerous cells and tissues.
- cancer and “tumor” are not mutually exclusive when referred to herein.
- EC50 refers to the half-maximal effective concentration, which includes the concentration of antibody that induces a response halfway between baseline and maximum after a specified exposure time. EC50 essentially represents the concentration of antibody at which 50% of its maximal effect is observed and can be measured by methods known in the art.
- Figure 1 shows human CD16a(158F)-Fc, human CD16a(158V)-Fc, CD16a(158F)-his, human CD16a(158V)-his, human CD16b(NA1)-his, human CD16b(NA2)-his, human CD16b(SH)-his and cynomolgus monkey CD16-his protein samples SDS-PAGE reducing and non-reducing gum detection results.
- Lanes 1 and 2 are the protein bands of human CD16a(158F)-Fc under reducing and non-reducing conditions respectively
- lanes 3 and 4 are protein bands of human CD16a(158V)-Fc under reducing and non-reducing conditions respectively
- lane 5 and 6 are the protein bands of human CD16a(158F)-his under reducing and non-reducing conditions, respectively
- lanes 7 and 8 are the protein bands of human CD16a(158V)-his under reducing and non-reducing conditions, respectively
- lanes 9 and 10 Respectively, the protein bands of human CD16b(NA1)-his under reducing and non-reducing conditions
- lanes 11 and 12 are the protein bands of human CD16b(NA2)-his under reducing and non-reducing conditions, respectively
- lanes 13 and 14 are respectively
- lanes 15 and 16 are the protein bands of cynomolgus monkey CD16-his under reducing and non-reducing conditions, respectively
- Figure 2A is the FACS detection result of FlpinCHO cells transfected with human CD16a (158F) protein
- Figure 2B is the FACS detection result of FlpinCHO cells transfected with human CD16a (158V) protein
- Figure 2C is the FACS detection result of FlpinCHO cells transfected with human CD16b (NA1) protein
- Figure 2D is the FACS detection result of FlpinCHO cells transfected with human CD16b (NA2) protein
- Fig. 2E is the FACS detection result of FlpinCHO cells transfected with cynomolgus monkey CD16 protein
- Figure 3A is the binding of CD16 VHH-Fc antibody to FlpinCHO-human CD16a (158F) cells;
- Figure 3B is the binding of CD16 VHH-Fc antibody to FlpinCHO-human CD16a (158V) cells;
- Figure 4A is the combination of biotin-labeled CD16 VHH-Fc antibody and FlpinCHO-human CD16a (158V) cells;
- Fig. 4B is the combination of biotin-labeled CD16 VHH-Fc antibody and FlpinCHO-human CD16a (158V) cells in the presence of 10mg/mL human immunoglobulin;
- Figure 4C is the combination of biotin-labeled CD16 VHH-Fc antibody and FlpinCHO-human CD16a (158F) cells;
- Figure 4D is the binding of biotin-labeled CD16 VHH-Fc antibody to FlpinCHO-human CD16a (158F) cells in the presence of 10 mg/mL human immunoglobulin;
- Figure 5A is the binding reaction of FACS detection CD16 VHH-Fc antibody and FlpinCHO-human CD16b (NA1) cells;
- Figure 5B is the FACS detection of the binding reaction of CD16 VHH-Fc antibody to FlpinCHO-human CD16b (NA2) cells.
- Figure 6A is the binding of CD16 VHH-Fc antibody to human NK cells
- Figure 6B is the binding of biotin-labeled CD16 VHH-Fc antibody to human NK cells
- Figure 6C is the binding of biotin-labeled CD16 VHH-Fc antibody to human NK cells in the presence of 10 mg/mL human immunoglobulin;
- Fig. 7 is that FACS detects the binding reaction of CD16 VHH-Fc antibody and FlpinCHO-monkey CD16 cell;
- Figure 8 shows the activation of Jurkat-NFAT cells detected by the luciferase reporter system.
- Figure 9A is the binding of humanized CD16 VHH-Fc antibody to FlpinCHO-human CD16a (158F) cells;
- Figure 9B is the binding of humanized CD16 VHH-Fc antibody to FlpinCHO-human CD16a (158V) cells;
- Figure 10A is the binding reaction between humanized CD16 VHH-Fc antibody and FlpinCHO-human CD16b (NA1) cells;
- Figure 10B is the binding reaction of humanized CD16 VHH-Fc antibody to FlpinCHO-human CD16b (NA2) cells.
- Figure 11A is the binding of biotin-labeled CD16 VHH-Fc antibody to NK cells
- Figure 11B is the binding of biotin-labeled CD16 VHH-Fc antibody to NK cells in the presence of 10 mg/mL human immunoglobulin;
- Figure 12 is the binding of humanized CD16 VHH-Fc antibody to human neutrophils
- Figure 13 is the binding reaction of humanized CD16 VHH-Fc antibody and FlpinCHO-monkey CD16 cells
- Figure 14 is the activation of Jurkat-NFAT cells detected by the luciferase reporter system detected by the humanized CD16 VHH-Fc antibody.
- the extracellular domain (ECD, extra-cellular domain) of the above protein was sequentially connected with human IgG1 Fc (N297A) or His tag, (G 3 S) 2 linker and AVI tag to obtain immunity and
- the antigen sequence for antibody screening and identification (the amino acid sequence is shown in Table 2 as SEQ ID NO: 7-14), and General Biosystems (Anhui) Co., Ltd. was commissioned to synthesize the nucleotide sequence corresponding to the amino acid sequence and clone it into The pTT5 vector containing the signal peptide, and the plasmid was prepared according to established standard molecular biology methods.
- HEK293E cells purchased from Suzhou Yiyan Biotechnology Co., Ltd.
- PI Polysciences, Cat. No.: 24765-1
- FreeStyle TM 293 Thermofisher scientific, Cat. No.: 12338018
- the culture supernatant was loaded onto the protein A chromatography column (Protein A filler AT Protein A Diamond and chromatography column BXK16/26 were purchased from Borglon, and the article numbers were AA0273 and B-1620 respectively) , washed with PBS phosphate buffer (pH 7.4), then washed with 20mM PB, 1M NaCl (pH 7.2), and finally eluted with pH 3.4 citric acid buffer, collected from the protein A chromatography column
- the eluted Fc-labeled antibody was neutralized with 1/10 volume of 1M Tris at pH 8.0, dialyzed with PBS overnight at 4°C, and the dialyzed protein was sterile filtered through a 0.22-micron filter membrane and dispensed in Store at -80°C. That is, the purified human CD16-Fc protein was obtained, and the target bands of samples detected by SDS-PAGE reducing gel and non-reducing gel were shown in FIG.
- the culture supernatant was loaded onto a nickel ion affinity chromatography column HisTrap TM Excel (GE Healthcare, article number: GE17-3712-06), and the UV absorbance (A280nm )The change.
- the dialyzed protein was sterile-filtered with a 0.22-micron filter membrane and stored at -80°C to obtain the purified human CD16-his protein.
- the target bands of the samples detected by SDS-PAGE reducing gel and non-reducing gel are shown in Figure 1 .
- biotin-labeled protein a part of the His-tagged and AVI-tagged CD16 protein purified in the previous step was taken out for biotin-labeling in vitro.
- biotin labeling kit BirA biotin-protein ligase kit, Avidity, product number: BirA500.
- the uppercase bold font is the extracellular region
- the uppercase underline is the Fc tag
- GGGSGGGS is the linker
- HHHHHHHHHH is the His tag
- the lowercase bold font is the AVI tag.
- the mouse antibody 3G8 that recognizes human CD16 was obtained by immunizing mice with PMN (Fleit H.B.et al., Proc Natl Acad Sci U S A.1982 May), which can recognize human CD16a (158F and 158V) and CD16b (NA1, NA2 and SH), and has cross-binding activity with cynomolgus monkey CD16.
- the VL and VH of 3G8 and P2C47 and the human IgG1 Fc were connected in order from N-terminal to C-terminal, wherein VL and VH were connected through three GGGGS linkers to form scFv-hFc.
- the corresponding amino acid sequence information is as follows 3.
- NC is the negative control antibody scFv-hFc (L234A, L235A, D265A), which is an antibody against chicken egg lysozyme, and is commissioned to Taizhou Baiying Biotechnology Co., Ltd. for custom production.
- the full-length amino acid sequence encoding human CD16a158F (Uniprot ID: P08637, SEQ ID NO: 1), the full-length amino acid sequence of human CD16a158V (NCBI ID: AAH17865.1, SEQ ID NO: 2), the full-length human CD16b (NA1) Amino acid sequence (NCBI ID: AAA35881.1, SEQ ID NO: 3), human CD16b (NA2) full-length amino acid sequence (Uniprot ID: O75015, SEQ ID NO: 4) and cynomolgus monkey CD16 full-length amino acid sequence (NCBI ID : NP_001270121.1, the nucleotide sequence of SEQ ID NO: 6) was cloned into the pcDNA5-FRT vector (Thermofisher scientific, article number: V601020) and the plasmid was prepared (completed by Sangon Bioengineering (Shanghai) Co., Ltd.), the preparation was completed The plasmids were co
- the transfected FlipinCHO cells were placed in a 37°C, 5% (v/v) CO 2 incubator, and contained 800 ⁇ g/ml hygromycin and Selective culture in F12 medium with 10% (w/w) fetal bovine serum, after about 2 weeks, some cells were taken to detect the expression of cell surface antigens by flow cytometry, and the cell lines that recovered growth continued to be expanded and cultured. Nitrogen freezer.
- the IgG subtype control is a mouse IgG1 control (purchased from Taizhou Baiying Biotechnology Co., Ltd., article number: B118301).
- the 3G8 antibody can interact with Flpin CHO-human CD16a (158F), Flpin CHO-human CD16a (158V), Flpin CHO-human CD16b (NA1), Flpin CHO-human CD16b (NA2) and Flpin CHO-monkey CD16 cell line combination
- Table 4 lists the average fluorescence intensity of cells stained with the transfected cell line 3G8 antibody and fluorescent secondary antibody, indicating that these cell lines have been able to stably express the corresponding CD16 antigen, which can be used for subsequent antibody screening and identification.
- Human CD16a(158F)-hFc and human CD16a(158V)-hFc proteins were used for immunization.
- One alpaca (Llama) was selected for immunization, and each alpaca was immunized four times with an interval of 3 weeks.
- peripheral blood was collected and serum was separated, and the enzyme-linked immunosorbent assay ( ELISA) was used to detect the antibody titer and specificity against human CD16 in the serum, and the results are shown in Table 5.
- ELISA enzyme-linked immunosorbent assay
- Table 5 shows that the sera of alpacas immunized with human CD16 have varying degrees of binding to the immunogen after immunization, showing antigen-antibody reactions, and the highest dilution is about 5.9 million.
- the blank control is 1% (w/w) BSA, and the batch refers to the alpaca serum on the seventh day after the third (TB3) and fourth (TB4) immunization, and the data in the table are OD450nm values.
- RNAiso Plus reagent (Takara, catalog number: #9108/9109) to extract total RNA, and use PrimeScript TM II 1st Strand The cDNA Synthesis Kit (Takara, Cat. No.: 6210A) reverse-transcribed the extracted RNA into cDNA.
- Nested PCR was used to amplify the variable region nucleic acid fragment encoding the Nanobody and recover the target Nanobody nucleic acid fragment, and electrotransform the Nanobody nucleic acid fragment together with the linearized yeast display vector pYDC2 (from Sichuan Apak Biotechnology Co., Ltd.) into In vivo recombination was carried out in yeast competent cells EYB100, and a nanobody yeast display library targeting CD16 was constructed and tested. By serial dilution plating, the calculated stock size was 3.26 ⁇ 10 8 . To test the insertion rate of the library, 48 clones were randomly selected for colony PCR. The results showed that the insertion rate reached 100%.
- the yeast display library was coated with magnetic beads with biotin-labeled human CD16b(NA1)-his, CD16b(NA2)-his and CD16b(SH)-his proteins prepared in Example 1.1, and then reverse-screened with biological
- the fluorescently labeled human CD16a(158F)-his and CD16a(158V)-his proteins were coated with magnetic beads for forward screening, and after the enrichment of yeast clones that specifically bind to human CD16a, the fluorescein-labeled Reverse screening of human CD16b(NA1)-his, CD16b(NA2)-his and CD16b(SH)-his proteins and forward screening of human CD16a(158F)-his and CD16a(158V)-his proteins to obtain specific binding to CD16a of yeast clones.
- CD16a(158F) and CD16a(158V) binding-positive yeasts were plated and amplified and single clones were selected, and then 96 single colonies were selected for expansion and culture respectively.
- Biotin-labeled CD16a(158F)-his protein was mixed with excess SA-iFluor 647 (purchased from ThermoFisher scientific, catalog number: S21374), biotin-labeled CD16b(NA1)-his, CD16b(NA2)-his and CD16b( SH)-his protein was incubated with excess SA-Alexa Fluor 488 (purchased from ThermoFisher scientific, catalog number: S11223) for 1 hour for fluorescent labeling.
- yeast cells After washing, the expressed yeast cells were divided into two parts, and a part of the yeast cells were incubated with human immunoglobulin (Shanghai Institute of Biological Products) and the aforementioned fluorescein-labeled CD16a and CD16b antigens at 4°C for 1 hour. Another part of yeast cells was incubated with Alexa Fluor 488-labeled anti-HA antibody (purchased from ThermoFisher scientific, catalog number: A-21287) for 1 hour at 4°C. After the yeast cells were washed, they were analyzed by flow cytometry and the fluorescence intensity (MFI) was calculated respectively.
- human immunoglobulin Sethai Institute of Biological Products
- Alexa Fluor 488-labeled anti-HA antibody purchased from ThermoFisher scientific, catalog number: A-21287
- the MFI values of the fluorescently labeled CD16a and CD16b were divided by the MFI of the fluorescently labeled anti-HA to obtain the normalized MFI values of CD16a and CD16b.
- the normalized MFI values of some clones are shown in Table 6.
- Clones positive for CD16a were selected for sequencing.
- the sequencing results were analyzed using MOE software, and an evolutionary tree was constructed based on the amino acid sequence of the VHH-encoded protein. After eliminating sequences that were close to each other on the evolutionary tree according to the sequence similarity, 14 clones were obtained by screening.
- the nanobody sequences are shown in Table 7.
- Table 8 shows the amino acid sequences of VHH and Fc segment fusions.
- the CDRs of the sequence were analyzed by KABAT, Chothia or IMGT software respectively, and the CDR sequence information is shown in Table 9 below. Subsequently, the production identification of the VHH Nanobody Fc fusion protein was carried out according to the method in Example 1.2.
- the results are shown in Table 10 and Figures 3A-3B.
- the CD16 VHH-hFc antibody has good binding activity to both FlpinCHO-CD16a(158F) and FlpinCHO-CD16a(158V) cells, and the EC50 for binding to the two cells is equivalent.
- the EC50 of most antibodies is less than 1nM.
- the antibody to be tested was labeled in advance according to the instructions of the biotinylation kit (EZ-Link TM NHS-PEG4 Biotinylation Kit, purchased from Thermofisher Scientific, product number: 21455). After collecting the cells, the cells were directly incubated with the antibody to be tested in serial dilution , or the cells were first incubated with 10 mg/mL human immunoglobulin (Shanghai Institute of Biological Products) and then incubated with the antibody to be tested in a gradient dilution, and detected according to the method of Example 3.1, wherein the biotin-labeled antibody was incubated with fluorescein APC-labeled Streptavidin (High Concentration) (purchased from Biolegend, catalog number: 405243) was used for detection.
- fluorescein APC-labeled Streptavidin High Concentration
- Table 11-1 FACS detection of the effect of human immunoglobulin on the binding of VHH-Fc antibody to FlpinCHO-CD16a (158V) cells
- the binding of the antibody to be tested to FlpinCHO-human CD16b cells was detected according to the method in Example 3.1. As shown in Figures 5A-5B and Table 12, the 3G8 antibody is a positive antibody binding to CD16b, and the binding activity of all the tested antibodies to FlpinCHO-human CD16b (NA1) and FlpinCHO-human CD16b (NA2) is weaker than that of the 3G8 antibody.
- Example 3.2 According to the method of Example 3.2, the results are shown in Figure 6B and Table 14.
- the binding activity of the control antibody 3G8 to NK cells was completely lost, and VHH-05, VHH-06 and VHH-11
- the EC50 of antibody-cell binding activity decreased by 2-3 times, and the EC50 of the control antibody P2C47 decreased by about 4 times.
- the binding activity of VHH-05, VHH-06, VHH-11 and VHH-12 to NK cells was stronger than that of P2C47 antibody.
- the Jurkat-NFAT luciferase reporter cell line stably expressing human CD16a (158V) (purchased from BPS Bioscience, Cat. No. 60541) was used to detect the signal pathway in the luciferase reporter cell line activated by the CD16 antibody, and the luciferase signal was detected according to Bright -Glo TM Luciferase Assay System kit (Promega, catalog number: E2620) operating instructions.
- the experimental method is as follows: 2 ⁇ g/mL anti-human Fc tag antibody (Jackson Immune, catalog number: 109-006-098) was coated overnight at 4°C to capture the antibody to be tested with the human Fc tag, and the next day the antibody to be detected was The antibody was diluted with RIPM 1640 medium containing 5% FBS, the initial antibody concentration was 4nM, and the antibody was diluted 1:6, and then added to a 96-well flat-bottomed cell culture plate at 50 ⁇ l/well.
- the collected For the luciferase reporter cell line in the logarithmic growth phase adjust the cell concentration to 8 ⁇ 10 5 /mL with medium containing 2% FBS (RPMI 1640, purchased from Gibco, catalog number 12633012), add the cells to the culture plate, 50 ⁇ l /hole.
- RPMI 1640 purchased from Gibco, catalog number 12633012
- VHH-hFc form antibody against human CD16 was captured using a Protein A chip (GE Helthcare; 29-127-558).
- Sample and running buffer was HBS-EP+(10 mM HEPES, 150 mM NaCl, 3 mM EDTA, 0.05% surfactant P20) (GE Healthcare; BR-1006-69).
- the flow-through cell was set to 25°C.
- the sample block was set to 16°C. Both were pretreated with running buffer.
- the antibody to be tested was first captured with a Protein A chip, then a single concentration of CD16 antigenic protein was injected to record the binding and dissociation process of the antibody and the antigenic protein, and finally Glycine pH1.5 (GE Helthcare; BR-1003- 54) Complete chip regeneration. Binding was measured by injecting different concentrations of recombinant human CD16-ECD his protein in solution for 240 seconds, with a flow rate of 30 ⁇ L/min, starting from 200 nM (see detailed results for actual concentrations tested), diluted 1:1, for a total of 5 concentration. The dissociation phase is monitored for up to 600 seconds and is triggered by switching from sample solution to running buffer.
- binding rate (ka), dissociation rate (kd) and binding affinity (KD) of the antibody to be tested and the human CD16b-ECD his protein were detected according to the method of Example 7.1, as shown in Table 18 and Table 19.
- Example 7.1 According to the method of Example 7.1, the binding rate (ka), dissociation rate (kd) and binding affinity (KD) of the antibody to be tested and monkey CD16-ECD his protein are shown in Table 20.
- IGHV3-30*02 and IGHV3-7*01 were selected as alpaca antibody VHH-06 and IGHV3-7*01 respectively.
- the CDRs of alpaca antibodies were grafted into the FRs of their human templates to form variable region sequences in the order FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
- the key amino acids in the FR region sequence of the humanized antibody were back-mutated to the corresponding amino acids of the alpaca antibody to ensure the original affinity, and a humanized anti-CD16 single domain antibody was obtained.
- the numbering of amino acid residues and CDR regions of the antibodies in this example are determined and annotated by the IMGT numbering system (see http://www.abysis.org/abysis/sequence_input/key_annotation/key_annotation.cgi for details).
- the humanized antibody VHHs designed by the above methods are shown in Table 21 and Table 22, respectively.
- M39V means that the 39th M of Graft is mutated into V, and so on.
- the numbering of backmutated amino acids is the IMGT numbering.
- S40G means that the 40th position of Graft is mutated into G, and so on.
- the numbering of backmutated amino acids is the IMGT numbering.
- the humanized VHH sequences are shown in Table 23 and Table 24.
- the humanized antibody sequences were prepared according to the method in Example 1.2 to prepare VHH-Fc antibodies.
- the humanized VHH-Fc sequences are shown in Table 25 and Table 26.
- the binding of the humanized antibody to FlpinCHO-human CD16a cells was detected according to the method in Example 3.1. As shown in Figures 9A-9B and Table 27, it has good binding activity to both FlpinCHO-CD16a(158F) and FlpinCHO-CD16a(158V) cells, and the EC50 of binding to the two cells is equivalent, both less than 1nM.
- the binding of the antibody to be tested to FlpinCHO-human CD16b cells was detected according to the method in Example 3.1. It has been detected in Example 3 that the binding activity of P2C47 to FlpinCHO-human CD16b (NA1) and FlpinCHO-human CD16b (NA1) is significantly weaker than that of CD16a and CD16b positive antibody 3G8. As shown in Figures 10A-10B and Table 28, the binding of the humanized VHH antibody to FlpinCHO-human CD16b (NA1) and FlpinCHO-human CD16b (NA2) is equivalent to that of the control antibody P2C47, so the binding activity of the humanized antibody can be inferred Also weaker than 3G8 antibody.
- NA indicates weak antibody binding activity and poor curve fitting.
- the detection was carried out according to the method of Example 3.2, and the results are shown in Figures 11A-11B and Table 29.
- the binding activity of the control antibody 3G8 to NK cells was completely lost, and VHH-05, VHH-06 and VHH
- the EC50 of the binding activity of the -11 antibody to cells decreased by 3-4 times, and the EC50 of the control antibody P2C47 decreased by about 4-5 times.
- the binding activity of VHH06-03, VHH06-04, VHH12-05 and VHH12-06 to NK cells was stronger than that of P2C47 antibody.
- the humanized CD16 antibody activates the signaling pathway in the luciferase reporter cell line, and the results are shown in Table 31 and Figure 13.
- all humanized antibodies can activate Jurkat cells The downstream signaling pathway, and the activation activity is stronger than that of P2C47 antibody.
- the affinity between the humanized CD16 antibody and human CD16a(158F)-ECD-his protein was detected according to the method in Example 7.1.
- the binding rate (ka), dissociation rate (kd) and binding affinity (KD) of the antibody to be tested and human CD16a(158F)-ECD his protein are shown in Table 32.
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Abstract
Description
| VH | FR Template | FR mutations |
| VH3 | IGHV3-30*02 | M39V,H40R,V42Y,G49Q,L50R,Y66N,L87V,V101D,Y103I |
| VH4 | IGHV3-30*02 | M39V,H40R,V42Y,G49Q,L50R,Y66N,A68P,L87V,V101D,Y103I |
| VH5 | IGHV3-30*02 | M39V,H40R,V42Y,G49Q,L50R,Y66N,S83A,L87V,V101D,Y103I |
| VH6 | IGHV3-30*02 | M39V,H40R,V42Y,G49Q,L50R,Y66N,I78V,L87V,V101D,Y103I |
| VH7 | IGHV3-30*02 | M39V,H40R,V42Y,G49Q,L50R,Y66N,L87V,V101D,Y103I,M123Q |
| VH | FR Template | FR mutations |
| VH2 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A |
| VH3 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N |
| VH4 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N,V68A,S70F |
| VH5 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N,D81V |
| VH6 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N,L87V |
| VH7 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N,M123Q |
| VH8 | IGHV3-30*01 | S40G,V42Y,G49Q,L50R,W52L,N55A,Y66N,V68A,S70F,D81V |
Claims (25)
- 一种特异性结合人CD16的抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段包含CDRs组合,所述CDRs组合包含:CDR1、CDR2和CDR3;所述CDR1、CDR2和CDR3具有选自SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示VHH序列的HCDR1、HCDR2和HCDR3。
- 根据权利要求1所述的抗体或抗原结合片段,其特征在于,根据Kabat、Chothia或IMGT编号系统确定所述HCDR1、HCDR2和HCDR3;可选地,所述HCDR1、HCDR2和HCDR3选自表9;可选地,所述HCDR1选自SEQ ID NO:49、52、54、57、60、62、65、66、67、68、70、72、78、79、80、81或88;可选地,所述HCDR2选自SEQ ID NO:50、53、55、58、61、63、69、71、73、75、76、77、82或85;可选地,所述HCDR3选自SEQ ID NO:51、56、59、64、74、83、84、86或87;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:52、53、51或SEQ ID NO:54、55、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:57、58、59,SEQ ID NO:60、61、59或SEQ ID NO:62、63、64;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:65、53、51或SEQ ID NO:66、55、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:67、53、51或SEQ ID NO:68、55、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、69、51,SEQ ID NO:70、71、51或SEQ ID NO:72、73、74;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、75、51,SEQ ID NO:52、76、51或SEQ ID NO:54、77、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:78、53、51或SEQ ID NO:79、55、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:80、53、51或SEQ ID NO:81、55、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、69、51,SEQ ID NO:65、71、51或SEQ ID NO:66、73、56;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:57、82、83,SEQ ID NO:60、61、83或SEQ ID NO:62、63、84;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:57、85、86,SEQ ID NO:60、61、86或SEQ ID NO:62、63、87;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:57、82、86,SEQ ID NO:60、61、86或SEQ ID NO:62、63、87;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:88、82、83,SEQ ID NO:60、61、83或SEQ ID NO:62、63、84;优选地,根据Kabat、Chothia或IMGT编号系统,所述HCDR1、HCDR2和HCDR3选自SEQ ID NO:49、50、51,SEQ ID NO:80、53、51或SEQ ID NO:81、55、56;
- 根据权利要求1或2所述的抗体或抗原结合片段,其特征在于,所述CDR1、CDR2和/或CDR3包含在所述HCDR1、HCDR2和/或HCDR3上发生1个、2个或3个突变的氨基酸序列;所述突变可选自插入、缺失和/或替换,所述替换优选为保守氨基酸的替换。
- 根据权利要求1或2所述的抗体或抗原结合片段,其特征在于,所述CDR1、CDR2和/或CDR3包含与所述HCDR1、HCDR2和/或HCDR3相比具有至少80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%同一性的序列。
- 根据权利要求1~4任一项所述的抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段包含单域抗体,所述单域抗体包含所述CDR1、CDR2和CDR3。
- 根据权利要求5所述的抗体或抗原结合片段,其特征在于,所述单域抗体包含选自SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示的序列;可选地,所述单域抗体包含与SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示的序列相比具有至多20个、19个、18个、17个、16个、15个、14个、13个、12个、11个、10个、9个、8个、7个、6个、5个、4个、3个、2个或1个突变的序列,所述突变可选自插入、缺失和/或替换,所述替换优选为保守氨基酸的替换;可选地,所述单域抗体包含与SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示的序列相比具有至少80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%同一性的序列。
- 根据权利要求1~6任一项所述的抗体或抗原结合片段,其特征在于,所述抗体包含SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示VHH结构域中的FR区;可选地,所述抗体包含与SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示VHH结构域中的FR区相比具有至多15个、14个、13个、12个、11个、10个、9个、8个、7个、6个、5个、4个、3个、2个或1个突变的序列,所述突变可选自插入、缺失和/或替换,所述替换优选为保守氨基酸的替换;可选地,所述单域抗体包含与SEQ ID NO:21~34或SEQ ID NO:90~101任一项所示VHH结构域中的FR区序列相比具有至少80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%或100%同一性的序列。
- 根据权利要求1~7任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段为:(1)嵌合抗体或其片段;(2)人源化抗体或其片段;或(3)全人抗体或其片段。
- 根据权利要求1~8任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段包含或不包含抗体重链恒定区;可选地,所述抗体重链恒定区可选自人、羊驼、小鼠、大鼠、兔或山羊;可选地所述抗体重链恒定区可选自IgG、IgM、IgA、IgE或IgD,所述IgG可选自IgG1、IgG2、IgG3或IgG4;可选地,所述重链恒定区可选自Fc区、CH3区或完整重链恒定区,优选地,所述重链恒定区为人Fc区,优选包含如SEQ ID NO:35~48或SEQ ID NO:102~113任一项所示的序列;优选地,所述抗体或抗原结合片段为重链抗体。
- 根据权利要求1~9任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段还偶联有治疗剂或示踪剂;优选地,所述治疗剂选自放射性同位素、细胞毒性剂、化疗药物或免疫调节剂,所述示踪剂选自放射学造影剂、顺磁离子、金属、荧光标记、化学发光标记、超声造影剂和光敏剂。
- 根据权利要求1~10任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段特异性结合人CD16或猴CD16,优选地所述抗体或抗原结合片段与人的CD16或猴CD16的KD小于1E-6M、1E-7M、2E-7M、3E-7M、4E-7M、5E-7M、6E-7M、8E-7M、9E-7M、1E-8M、2E-8M、3E-8M、4E-8M、5E-8M、6E-8M、8E-8M、9E-8M或1E-9M。
- 根据权利要求1~11任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段与CD16A结合,不与CD16B结合或与CD16B弱结合,所述CD16B选自CD16B(NA1)、CD16B(NA2)或CD16B(HS)。
- 根据权利要求1~12任一项所述抗体或抗原结合片段,其特征在于,所述抗体或抗原结合片段还连接有其他功能性分子,优选地,所述其他功能性分子可选自以下的一种或多种:信号肽、蛋白标签、细胞因子、血管生成抑制剂或免疫检查点抑制剂。
- 根据权利要求13所述的抗体或抗原结合片段,其特征在于所述细胞因子可为IL-2、IL-6、IL-12、IL-15、IL-21、IFNγ或TNFα;所述血管生成抑制剂可为内皮抑制素;所述免疫检查点抑制剂可为SIRPα。
- 一种多特异性抗原结合分子,其特征在于,所述多特异性抗原结合分子包含权利要求1~14的抗体或抗原结合片段、以及结合CD16以外其它抗原的抗原结合分子,或结合与权利要求1~14所述的抗体或抗原结合片段不同的CD16表位;可选地,所述CD16以外其它抗原可选自:CD137、CD258、PD-1、PD-L1、4-1BB、CD40、CD64、EGFR、VEGF、HER2、HER1、HER3、IGF-1R、磷脂酰丝氨酸(Phosphatidylserine,PS)、C-Met、BCMA、HSA、GPRC5D、MSLN、血脑屏障受体、GPC3,PSMA,CD33,GD2,ROR1,ROR2,FRα或Gucy2C;优选地,所述其他抗原结合分子为抗体或抗原结合片段;优选地,所述多特异性抗原结合分子可为双特异性、三特异性或四特异性;优选地,所述多特异性结合分子可为二价、四价或六价。
- 一种分离的核酸片段,其特征在于,所述核酸片段编码权利要求1~14任一项所述抗体或抗原结合片段或权利要求15所述多特异性抗原结合分子。
- 一种载体(vector),其特征自在于,所述载体包含权利要求16所述的核酸片段。
- 一种宿主细胞,其特征在于,所述宿主细胞包含权利要求17所述的载体;优选地,所述宿主细胞为原核细胞或真核细胞,例如细菌(大肠杆菌)、真菌(酵母)、昆虫细胞或哺乳动物细胞(CHO细胞系或293T细胞系)。
- 一种制备权利要求1~14任一项所述抗体或抗原结合片段、权利要求15所述多特异性抗原结合分子的方法,其特征在于,所述方法包括培养权利要求18所述细胞,以及分离所述细胞表达的抗体、抗原结合片段或多特异性抗原结合分子。
- 一种药物组合物,其特征在于,所述药物组合物包含权利要求1~14任一项所述的抗体或抗原结合片段、权利要求15所述的多特异性抗原结合分子、权利要求16所述的核酸片 段、权利要求17所述载体或根据权利要求19所述方法制备获得的产品;可选地,所述药物组合物还包含药学上可接受的载体(carrier)、稀释剂或助剂;可选地,所述药物组合物还包含额外的抗肿瘤剂。
- 一种治疗肿瘤或癌症、炎性疾病或过敏症的方法,其特征在于,所述方法包括向受试者施用有效量的权利要求1~14任一项所述的抗体或抗原结合片段、权利要求15所述的多特异性抗原结合分子、权利要求16所述的核酸片段、权利要求17所述的载体、根据权利要求19所述方法制备获得的产品或权利要求20所述的药物组合物;优选地,肿瘤或癌症选自非霍奇金淋巴瘤、慢性淋巴细胞白血病、霍奇金氏病、微小残留病、转移瘤。
- 权利要求1~14任一项所述的抗体或抗原结合片段、权利要求15所述的多特异性抗原结合分子、权利要求16所述的核酸片段、权利要求17所述的载体、根据权利要求19所述方法制备获得的产品或权利要求20所述的药物组合物在制备治疗肿瘤或癌症、炎性疾病或过敏症药物中的用途;优选地,肿瘤或癌症选自非霍奇金淋巴瘤、慢性淋巴细胞白血病、霍奇金氏病、微小残留病、转移瘤。
- 一种试剂盒,其特征在于,所述试剂盒包含权利要求1~14任一项所述的抗体或抗原结合片段、权利要求15所述的多特异性抗原结合分子、权利要求16所述的核酸片段、权利要求17所述的载体、根据权利要求19所述方法制备获得的产品或权利要求20所述的药物组合物。
- 一种检测生物学样品中CD16表达的方法,其特征在于,所述方法包括在权利要求1~14任一项所述的抗体或抗原结合片段与CD16之间能够形成复合物的条件下,使所述生物学样品与权利要求1~14任一项所述的抗体或抗原结合片段接触;优选地,所述方法还包括检测所述复合物的形成,指示样品中CD16的存在或表达水平。
- 权利要求1~14任一项所述的抗体或抗原结合片段在制备CD16检测试剂中的用途。
Priority Applications (4)
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| EP22831997.6A EP4365199A4 (en) | 2021-06-29 | 2022-06-28 | Cd16 antibody and use thereof |
| JP2023580479A JP2024524378A (ja) | 2021-06-29 | 2022-06-28 | Cd16抗体及びその応用 |
| US18/574,812 US20240343811A1 (en) | 2021-06-29 | 2022-06-28 | Cd16 antibody and use thereof |
| CN202280046034.7A CN117580865A (zh) | 2021-06-29 | 2022-06-28 | Cd16抗体及其应用 |
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| CN202110732732.X | 2021-06-29 |
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| US (1) | US20240343811A1 (zh) |
| EP (1) | EP4365199A4 (zh) |
| JP (1) | JP2024524378A (zh) |
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| CN117580865A (zh) | 2024-02-20 |
| JP2024524378A (ja) | 2024-07-05 |
| EP4365199A4 (en) | 2025-02-26 |
| EP4365199A1 (en) | 2024-05-08 |
| US20240343811A1 (en) | 2024-10-17 |
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