WO2024258965A2 - Synthetic antifreeze glycoproteins with ice-binding activity - Google Patents
Synthetic antifreeze glycoproteins with ice-binding activity Download PDFInfo
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- WO2024258965A2 WO2024258965A2 PCT/US2024/033611 US2024033611W WO2024258965A2 WO 2024258965 A2 WO2024258965 A2 WO 2024258965A2 US 2024033611 W US2024033611 W US 2024033611W WO 2024258965 A2 WO2024258965 A2 WO 2024258965A2
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N1/00—Microorganisms; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
- C12N1/04—Preserving or maintaining viable microorganisms
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N1/00—Preservation of bodies of humans or animals, or parts thereof
- A01N1/10—Preservation of living parts
- A01N1/12—Chemical aspects of preservation
- A01N1/122—Preservation or perfusion media
- A01N1/125—Freeze protecting agents, e.g. cryoprotectants or osmolarity regulators
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K8/00—Cosmetics or similar toiletry preparations
- A61K8/18—Cosmetics or similar toiletry preparations characterised by the composition
- A61K8/30—Cosmetics or similar toiletry preparations characterised by the composition containing organic compounds
- A61K8/64—Proteins; Peptides; Derivatives or degradation products thereof
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61Q—SPECIFIC USE OF COSMETICS OR SIMILAR TOILETRY PREPARATIONS
- A61Q19/00—Preparations for care of the skin
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/001—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof by chemical synthesis
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/52—Chemical aspects of preservation of animal cells or human cells
- C12N5/522—Preservation media
- C12N5/525—Freeze protecting agents, e.g. cryoprotectants or osmolarity regulators
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K2800/00—Properties of cosmetic compositions or active ingredients thereof or formulation aids used therein and process related aspects
- A61K2800/10—General cosmetic use
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K2800/00—Properties of cosmetic compositions or active ingredients thereof or formulation aids used therein and process related aspects
- A61K2800/40—Chemical, physico-chemical or functional or structural properties of particular ingredients
- A61K2800/52—Stabilizers
- A61K2800/524—Preservatives
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/06—Linear peptides containing only normal peptide links having 5 to 11 amino acids
Definitions
- Antifreeze proteins have even come to the consumer market as ice cream additives that improve texture (Meldolesi, A. GM.; (2009) Nat. Biotechnol.27(8), 682–682).
- a particularly impactful potential application is in biomedical cryopreservation. Cryopreservation and banking of cells and tissues valuable for regenerative medicine and research purposes is essential to prevent growth of bacteria and to halt cellular metabolism (Cao, E.; et al., (2003) Biotechnol. Bioeng.82(6), 684–690).
- freeze-thaw procedures are associated with loss of viability and changes in cellular morphology and function (Jang, T. H. (2017) Integr. Med. Res.6(1), 12–18; Fahy, G.
- AFGPs antifreeze glycoproteins
- AFGPs are relatively simple in structure, consisting of a highly conserved Ala-Ala- Thr repeat.
- the Thr residue is ⁇ -glycosylated with the disaccharide ⁇ Gal(1 ⁇ 3) ⁇ GalNAc (FIG.1A)(DeVries, A. L.; et al., (1969) Science (80-..163(3871) 1073–1075; Graham, L. A.; Davies, P. L.; (2005) Science (80-. ).310 (5747), 461–461; Urba ⁇ czyk, M.; et al., (2017) Amino Acids, 49 (2), 209–222).
- Isoforms with molecular weights (MWs) ranging from 2.6– 33.7 kDa, classified as AFGP8–AFGP1, are encoded within polyprotein genes (Knight, C. A.; et al., (1984) Nature 308(5956), 295–296; Chen, L.; et al., (1997) Proc. Natl. Acad. Sci. U. S. A.94(8) 3817-3822).
- AFGPs adopt an extended helical conformation (FIG.1) as evidenced by temperature-varied circular dichroism (CD)(Raymond, J. A.; et al., (1977) Biopolymers 16(11), 2575–2578; Tseng, P.
- AFGPs most well-established antifreeze properties are ice recrystallization inhibition (IRI) and thermal hysteresis (TH). IRI properties cause a reduction in ice crystal mean grain size (MGS) as compared to untreated ice.
- AFGPs also induce a non-colligative freezing point depression reaching -1.8 ⁇ C at ⁇ 10 ⁇ M with observable effects at concentrations 300–500x lower than dissolved sugars (Carvajal-Rondanelli, et al., (2011) Journal of the Science of Food and Agriculture 91(14) 2507-2510) and 100,000x that of NaCl (Bar Dolev, M.; et al., (2016) Annu. Rev. Biochem.85 515–542). While TH is important for aquatic creatures in icy oceans, materials with IRI activity are of great interest for cryopreservation in biomedical, agricultural, and food industry settings (Bar Dolev, M.; et al., (2016) Annu. Rev.
- Soc.142 (9), 4356– 4366; Naullage, P. M.; et al., (2020) J. Chem. Phys..153, 174106; Hudait, A.; et al., (2019) J. Am. Chem. Soc.141(19) 7887–7898; Deller, R. C.; et al., (2016) Biomater. Sci.4(7) 1079– 1084; Deller, R. C.; et al., (2014) Nat Commun 53244; Tekin, K.; Dawark ⁇ n, A. (2019) Cryobiology 8960–67; Six, K. R.; et al., (2019) Transfusion 59(9) 3029–3031).
- the invention in one aspect, relates to peptides comprising alanine residues and glycosylated residues (e.g., glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues) in a particular ratio (e.g., from about 3:2 to about 4:1).
- the peptide has a particular chain length, such as, for example a chain length of at least 30 amino acid residues.
- the disclosed peptides beneficially inhibit ice crystal formation, and, therefore, offer utility in a wide range of applications, including, but not limited to biomedical cryopreservation, food technology, agriculture, cosmetics, and building materials.
- the disclosed peptides can be formulated into a composition (e.g., a cryoprotectant composition, an agricultural formulation, a cosmetic composition) or a food product, or, alternatively, can be attached to a surface for use in structural applications.
- peptides comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- cryoprotectant compositions comprising an effective amount of a disclosed peptide and one or more selected from: (a) a non-antifreeze protein; (b) a microbe; (c) a cell component; and (d) a cell.
- food products comprising a disclosed peptide.
- agriculture compositions comprising a disclosed peptide.
- solid or semi-solid supports comprising a surface covalently attached to a residue of a disclosed peptide.
- cosmetic compositions comprising a disclosed peptide.
- kits comprising a disclosed peptide and one or more selected from: (a) a biological material; (b) a food product; (c) an agricultural product; (d) a solid or semi-solid support; and (e) a cosmetic.
- FIG.1A-F show a representative chemical structure and cartoon representation of a native AFGP and schematic for preparation of sAFGPs.
- FIG.2A-D show representative characterization of sAFGP molar masses and conformations.
- FIG.3A-D show representative ice binding properties of sAFGPs with varying amino acid compositions.
- FIG.4A-C show representative ice binding data for sAFGPs composed of the native 1:2 glycoT:A ratio and with varied chain lengths and varied glycan structures.
- FIG.5A-C show representative cellular internalization, biodegradation, and cytocompatibility of sAFGPs with the native 1:2 glycoT:A composition and bearing the native disaccharide.
- FIG.6 shows a representative cartoon and data of cryopreservation of hRBCs in sAFGP supplemented HES solutions or PBS alone.
- FIG.7 shows representative infrared spectroscopy data of complete monomer consumption.
- FIG.8A-C show representative infrared spectroscopy data of prepared N- carboxyanhydrides (NCA).
- FIG.9A-G show representative infrared spectroscopy data of prepared sAFGPs.
- FIG.10 shows a representative GPC/MALS trace for ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 78.
- FIG.11 shows a representative CD spectra of ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)57 in PBS versus ultrapure water water at 25 °C.
- FIG.12 shows a representative CD spectra of ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 93 at varied temperatures in ultrapure water.
- FIG.13 shows a representative CD spectra of ( ⁇ GalTy-s-Ax)n at various amino acid concentrations.
- FIG.14 shows a representative CD spectra of ( ⁇ GalNAcT y -s-A x ) n at various amino acid concentrations .
- FIG.16 shows representative images of ice shaping of (glycoT 0.33 -s-A 0.66 ) 93 at 0.5 mg/mL.
- FIG.17 shows representative quantified IRI data as % MGS relative to PBS for ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66) 170, PVA, and DMSO.
- FIG.18 shows representative images of internalization AF594-( ⁇ Gal ⁇ GalNAcT0.33- s-A0.66)57 in Raji cells.
- FIG.19 shows a representative image of SDS-Page used to determine the concentration of sAFGP needed for protease digestion studies.
- FIG.20 shows representative data demonstrating cryopreservation of HEK293 cells with varying treatments .
- FIG.21 shows representative data demonstrating cryopreservation of hRBC cells with HES concentrations .
- FIG.22 shows representative images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 28 .
- FIG.23 shows representative images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)57.
- FIG.24 shows representative images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)170.
- FIG.25 shows representative images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT 0.5 -s-A 0.5 ) 52 .
- FIG.26 shows representative images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT 0.66 -s-A 0.33 ) 46 .
- FIG.27 shows representative images of cooling splat assays and IRI activity for ( ⁇ GalNAcT0.33-s-A0.66)99.
- FIG.28 shows representative images of cooling splat assays and IRI activity for ⁇ GalT0.33-s-A0.66)93.
- FIG.29 shows representative images of cooling splat assays and IRI activity for ( ⁇ GalNAcT 0.33 -s-A 0.66 ) 93 .
- FIG.30 shows representative images of cooling splat assays and IRI activity for ( ⁇ GalT 0.33 -s-A 0.66 ) 93 .
- FIG.31 shows representative images of cooling splat assays and IRI activity for 28mer, 57mer and 170mer of ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)n at 70.7 ⁇ M.
- FIG.32 shows representative images of cooling splat assays and IRI activity for x:y ratios of 1:2, 1:1, and 2:1 ( ⁇ Gal ⁇ GalNAcTx-s-Ay)n at 70.7 ⁇ M.
- FIG.33 shows representative images of cooling splat assays and IRI activity for sugar residues ⁇ Gal, ⁇ GalNAc, ⁇ Gal, and ⁇ GalNAc glycoT 0.33 -s-A 0.66 ) 93 at 70.7 ⁇ M.
- FIG.34 shows representative images of cooling splat assays and IRI activity for 28mer, 57mer and 170mer of ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) n at 0.5 mg/mL.
- FIG.35 shows representative images of cooling splat assays and IRI activity for sugar residues ⁇ Gal, ⁇ GalNAc, ⁇ Gal, and ⁇ GalNAc glycoT0.33-s-A0.66)93 at 0.5 mg/mL.
- FIG.36 shows representative images of cooling splat assays and IRI activity for controls with PBS, 5% DMSO, 10% DMSO, 50 ⁇ M PVA and 100 ⁇ M PVA.
- FIG.37 shows representative images of cooling splat assays and IRI activity for (GalNAcSer 0.2 -s-Ala 0.8 ) 150 at 0.5 mg/mL in PBS as compared to PBS alone.
- FIG.38 shows a representative 1 H NMR spectra of ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)n.
- FIG.39 shows a representative 1 H NMR spectra of ( ⁇ GalNAcT0.33-s-A0.66)93.
- FIG.40 shows a representative 1 H NMR spectra of ( ⁇ GalNAcT 0.33 -s-A 0.66 ) 93 .
- FIG.41 shows a representative 1 H NMR spectra of ( ⁇ GalT 0.33 -s-A 0.66 ) 93 .
- FIG.42 shows a representative 1 H NMR spectra of ( ⁇ GalT0.33-s-A0.66)93.
- FIG.43 shows cooling splat apparatus.
- the term “comprising” can include the aspects “consisting of” and “consisting essentially of.”
- Ranges can be expressed herein as from “about” one particular value, and/or to “about” another particular value. When such a range is expressed, another aspect includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by use of the antecedent “about,” it will be understood that the particular value forms another aspect. It will be further understood that the endpoints of each of the ranges are significant both in relation to the other endpoint, and independently of the other endpoint.
- amounts, sizes, formulations, parameters, and other quantities and characteristics are not and need not be exact, but can be approximate and/or larger or smaller, as desired, reflecting tolerances, conversion factors, rounding off, measurement error and the like, and other factors known to those of skill in the art.
- an amount, size, formulation, parameter or other quantity or characteristic is “about” or “approximate” whether or not expressly stated to be such. It is understood that where “about” is used before a quantitative value, the parameter also includes the specific quantitative value itself, unless specifically stated otherwise.
- references in the specification and concluding claims to parts by weight of a particular element or component in a composition denotes the weight relationship between the element or component and any other elements or components in the composition or article for which a part by weight is expressed.
- X and Y are present at a weight ratio of 2:5, and are present in such ratio regardless of whether additional components are contained in the composition.
- a weight percent (wt. %) of a component is based on the total weight of the formulation or composition in which the component is included.
- thermal hysteresis or “TH” is intended to refer to the difference between the temperature at which ice crystals grow (the freezing temperature, Tf) and the temperature at which they melt (the melting point, T m ).
- Tf freezing temperature
- T m melting point
- the terms “optional” or “optionally” means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where said event or circumstance occurs and instances where it does not.
- the terms “effective amount” and “amount effective” refer to an amount that is sufficient to achieve the desired result.
- the “effective amount” can refer to the amount of the peptide that must be present in the composition in order to minimize, prevent, or otherwise delay ice crystal formation.
- the effective amount is the amount of the peptide required to reduce crystal mean grain size (MGS) by at least about 10%, about 20%, about 25%, about 30%, about 40%, about 50%, about 60%, about 65%, about 70%, about 75%, or more than about 75%.
- the effective amount is the amount of the peptide required such that the majority of the ice crystals present in the sample are hexagonal, square, and/or amorphous crystals (as opposed to spicular crystals).
- kits means a collection of at least two components constituting the kit. Together, the components constitute a functional unit for a given purpose. Individual member components may be physically packaged together or separately. For example, a kit comprising an instruction for using the kit may or may not physically include the instruction with other individual member components.
- the instruction can be supplied as a separate member component, either in a paper form or an electronic form which may be supplied on computer readable memory device or downloaded from an internet website, or as recorded presentation.
- instruction(s) means documents describing relevant materials or methodologies pertaining to a kit. These materials may include any combination of the following: background information, list of components and their availability information (purchase information, etc.), brief or detailed protocols for using the kit, trouble-shooting, references, technical support, and any other related documents. Instructions can be supplied with the kit or as a separate member component, either as a paper form or an electronic form, which may be supplied on computer readable memory device or downloaded from an internet website, or as recorded presentation.
- Instructions can comprise one or multiple documents, and are meant to include future updates.
- the term “derivative” refers to a peptide having a structure derived from the structure of a parent peptide (e.g., a peptide disclosed herein) and whose structure is sufficiently similar to those disclosed herein and based upon that similarity, would be expected by one skilled in the art to exhibit the same or similar activities and utilities as the claimed peptides, or to induce, as a precursor, the same or similar activities and utilities as the claimed peptides.
- Exemplary derivatives include salts, esters, amides, salts of esters or amides, and N-oxides of a parent peptide.
- the term “substituted” is contemplated to include all permissible substituents of organic compounds.
- the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, and aromatic and nonaromatic substituents of organic compounds.
- Illustrative substituents include, for example, those described below.
- the permissible substituents can be one or more and the same or different for appropriate organic compounds.
- the heteroatoms, such as nitrogen can have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms.
- substitution or “substituted with” include the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., a compound that does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. It is also contemplated that, in certain aspects, unless expressly indicated to the contrary, individual substituents can be further optionally substituted (i.e., further substituted or unsubstituted).
- a 1 ,” “A 2 ,” “A 3 ,” and “A 4 ” are used herein as generic symbols to represent various specific substituents. These symbols can be any substituent, not limited to those disclosed herein, and when they are defined to be certain substituents in one instance, they can, in another instance, be defined as some other substituents.
- the term “aliphatic” or “aliphatic group,” as used herein, denotes a hydrocarbon moiety that may be straight-chain (i.e., unbranched), branched, or cyclic (including fused, bridging, and spirofused polycyclic) and may be completely saturated or may contain one or more units of unsaturation, but which is not aromatic.
- aliphatic groups contain 1-20 carbon atoms.
- Aliphatic groups include, but are not limited to, linear or branched, alkyl, alkenyl, and alkynyl groups, and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.
- alkyl as used herein is a branched or unbranched saturated hydrocarbon group of 1 to 24 carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, s- butyl, t-butyl, n-pentyl, isopentyl, s-pentyl, neopentyl, hexyl, heptyl, octyl, nonyl, decyl, dodecyl, tetradecyl, hexadecyl, eicosyl, tetracosyl, and the like.
- the alkyl group can be cyclic or acyclic.
- the alkyl group can be branched or unbranched.
- the alkyl group can also be substituted or unsubstituted.
- the alkyl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, amino, ether, halide, hydroxy, nitro, silyl, sulfo-oxo, or thiol, as described herein.
- a “lower alkyl” group is an alkyl group containing from one to six (e.g., from one to four) carbon atoms.
- alkyl group can also be a C1 alkyl, C1-C2 alkyl, C1-C3 alkyl, C1-C4 alkyl, C1-C5 alkyl, C1-C6 alkyl, C1-C7 alkyl, C1-C8 alkyl, C1-C9 alkyl, C1-C10 alkyl, and the like up to and including a C1-C24 alkyl.
- alkyl is generally used to refer to both unsubstituted alkyl groups and substituted alkyl groups; however, substituted alkyl groups are also specifically referred to herein by identifying the specific substituent(s) on the alkyl group.
- halogenated alkyl or “haloalkyl” specifically refers to an alkyl group that is substituted with one or more halide, e.g., fluorine, chlorine, bromine, or iodine.
- halogenated alkyl specifically refers to an alkyl group that is substituted with one or more halide, e.g., fluorine, chlorine, bromine, or iodine.
- monohaloalkyl specifically refers to an alkyl group that is substituted with a single halide, e.g. fluorine, chlorine, bromine, or iodine.
- polyhaloalkyl specifically refers to an alkyl group that is independently substituted with two or more halides, i.e.
- alkoxyalkyl specifically refers to an alkyl group that is substituted with one or more alkoxy groups, as described below.
- aminoalkyl specifically refers to an alkyl group that is substituted with one or more amino groups.
- hydroxyalkyl specifically refers to an alkyl group that is substituted with one or more hydroxy groups.
- alkyl is used in one instance and a specific term such as “hydroxyalkyl” is used in another, it is not meant to imply that the term “alkyl” does not also refer to specific terms such as “hydroxyalkyl” and the like. [0087] This practice is also used for other groups described herein.
- cycloalkyl refers to both unsubstituted and substituted cycloalkyl moieties
- the substituted moieties can, in addition, be specifically identified herein; for example, a particular substituted cycloalkyl can be referred to as, e.g., an “alkylcycloalkyl.”
- a substituted alkoxy can be specifically referred to as, e.g., a “halogenated alkoxy”
- a particular substituted alkenyl can be, e.g., an “alkenylalcohol,” and the like.
- cycloalkyl is a non-aromatic carbon-based ring composed of at least three carbon atoms.
- examples of cycloalkyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, norbornyl, and the like.
- heterocycloalkyl is a type of cycloalkyl group as defined above, and is included within the meaning of the term “cycloalkyl,” where at least one of the carbon atoms of the ring is replaced with a heteroatom such as, but not limited to, nitrogen, oxygen, sulfur, or phosphorus.
- the cycloalkyl group and heterocycloalkyl group can be substituted or unsubstituted.
- the cycloalkyl group and heterocycloalkyl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, amino, ether, halide, hydroxy, nitro, silyl, sulfo-oxo, or thiol as described herein.
- the term “polyalkylene group” as used herein is a group having two or more CH 2 groups linked to one another.
- the polyalkylene group can be represented by the formula — (CH 2 ) a —, where “a” is an integer of from 2 to 500.
- Alkoxy also includes polymers of alkoxy groups as just described; that is, an alkoxy can be a polyether such as —OA 1 —OA 2 or — OA 1 —(OA 2 ) a —OA 3 , where “a” is an integer of from 1 to 200 and A 1 , A 2 , and A 3 are alkyl and/or cycloalkyl groups.
- alkenyl as used herein is a hydrocarbon group of from 2 to 24 carbon atoms with a structural formula containing at least one carbon-carbon double bond.
- the alkenyl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol, as described herein.
- groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol, as described here
- Examples of cycloalkenyl groups include, but are not limited to, cyclopropenyl, cyclobutenyl, cyclopentenyl, cyclopentadienyl, cyclohexenyl, cyclohexadienyl, norbornenyl, and the like.
- heterocycloalkenyl is a type of cycloalkenyl group as defined above, and is included within the meaning of the term “cycloalkenyl,” where at least one of the carbon atoms of the ring is replaced with a heteroatom such as, but not limited to, nitrogen, oxygen, sulfur, or phosphorus.
- the cycloalkenyl group and heterocycloalkenyl group can be substituted or unsubstituted.
- the cycloalkenyl group and heterocycloalkenyl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol as described herein.
- alkynyl as used herein is a hydrocarbon group of 2 to 24 carbon atoms with a structural formula containing at least one carbon-carbon triple bond.
- the alkynyl group can be unsubstituted or substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol, as described herein.
- groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or
- cycloalkynyl as used herein is a non-aromatic carbon-based ring composed of at least seven carbon atoms and containing at least one carbon-carbon triple bound.
- cycloalkynyl groups include, but are not limited to, cycloheptynyl, cyclooctynyl, cyclononynyl, and the like.
- heterocycloalkynyl is a type of cycloalkenyl group as defined above, and is included within the meaning of the term “cycloalkynyl,” where at least one of the carbon atoms of the ring is replaced with a heteroatom such as, but not limited to, nitrogen, oxygen, sulfur, or phosphorus.
- the cycloalkynyl group and heterocycloalkynyl group can be substituted or unsubstituted.
- the cycloalkynyl group and heterocycloalkynyl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, amino, carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol as described herein.
- aromatic group refers to a ring structure having cyclic clouds of delocalized ⁇ electrons above and below the plane of the molecule, where the ⁇ clouds contain (4n+2) ⁇ electrons.
- aromaticity is found in Morrison and Boyd, Organic Chemistry, (5th Ed., 1987), Chapter 13, entitled “Aromaticity,” pages 477-497, incorporated herein by reference.
- aromatic group is inclusive of both aryl and heteroaryl groups.
- aryl as used herein is a group that contains any carbon-based aromatic group including, but not limited to, benzene, naphthalene, phenyl, biphenyl, anthracene, and the like.
- the aryl group can be substituted or unsubstituted.
- the aryl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, heteroaryl, aldehyde, ⁇ NH 2 , carboxylic acid, ester, ether, halide, hydroxy, ketone, azide, nitro, silyl, sulfo-oxo, or thiol as described herein.
- biasryl is a specific type of aryl group and is included in the definition of “aryl.”
- the aryl group can be a single ring structure or comprise multiple ring structures that are either fused ring structures or attached via one or more bridging groups such as a carbon- carbon bond.
- biaryl can be two aryl groups that are bound together via a fused ring structure, as in naphthalene, or are attached via one or more carbon-carbon bonds, as in biphenyl.
- aldehyde as used herein is represented by the formula —C(O)H.
- amine or “amino” as used herein are represented by the formula — NA 1 A 2 , where A 1 and A 2 can be, independently, hydrogen or alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein. A specific example of amino is ⁇ NH 2 .
- alkylamino as used herein is represented by the formula —NH(-alkyl) where alkyl is a described herein.
- Representative examples include, but are not limited to, methylamino group, ethylamino group, propylamino group, isopropylamino group, butylamino group, isobutylamino group, (sec-butyl)amino group, (tert-butyl)amino group, pentylamino group, isopentylamino group, (tert-pentyl)amino group, hexylamino group, and the like.
- dialkylamino as used herein is represented by the formula —N(-alkyl) 2 where alkyl is a described herein.
- Representative examples include, but are not limited to, dimethylamino group, diethylamino group, dipropylamino group, diisopropylamino group, dibutylamino group, diisobutylamino group, di(sec-butyl)amino group, di(tert-butyl)amino group, dipentylamino group, diisopentylamino group, di(tert-pentyl)amino group, dihexylamino group, N-ethyl-N-methylamino group, N-methyl-N-propylamino group, N- ethyl-N-propylamino group and the like.
- carboxylic acid as used herein is represented by the formula —C(O)OH.
- esteer as used herein is represented by the formula —OC(O)A 1 or — C(O)OA 1 , where A 1 can be alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- polyester as used herein is represented by the formula —(A 1 O(O)C-A 2 -C(O)O)a— or —(A 1 O(O)C-A 2 -OC(O))a—, where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group described herein and “a” is an integer from 1 to 500.
- Polymer is as the term used to describe a group that is produced by the reaction between a compound or peptide having at least two carboxylic acid groups with a compound or peptide having at least two hydroxyl groups.
- ether as used herein is represented by the formula A 1 OA 2 , where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group described herein.
- polyether as used herein is represented by the formula —(A 1 O-A 2 O) a —, where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group described herein and “a” is an integer of from 1 to 500.
- Examples of polyether groups include polyethylene oxide, polypropylene oxide, and polybutylene oxide.
- halo halogen
- halide as used herein can be used interchangeably and refer to F, Cl, Br, or I.
- pseudohalide pseudohalogen
- pseudohalo pseudohalogen
- pseudohalo can be used interchangeably and refer to functional groups that behave substantially similar to halides. Such functional groups include, by way of example, cyano, thiocyanato, azido, trifluoromethyl, trifluoromethoxy, perfluoroalkyl, and perfluoroalkoxy groups.
- heteroalkyl refers to an alkyl group containing at least one heteroatom.
- heteroatoms include, but are not limited to, O, N, Si, P and S, wherein the nitrogen, phosphorous and sulfur atoms are optionally oxidized, and the nitrogen heteroatom is optionally quaternized.
- Heteroalkyls can be substituted as defined above for alkyl groups.
- heteroaryl refers to an aromatic group that has at least one heteroatom incorporated within the ring of the aromatic group. Examples of heteroatoms include, but are not limited to, nitrogen, oxygen, sulfur, and phosphorus, where N-oxides, sulfur oxides, and dioxides are permissible heteroatom substitutions.
- the heteroaryl group can be substituted or unsubstituted.
- heteroaryl group can be substituted with one or more groups including, but not limited to, alkyl, cycloalkyl, alkoxy, amino, ether, halide, hydroxy, nitro, silyl, sulfo-oxo, or thiol as described herein.
- Heteroaryl groups can be monocyclic, or alternatively fused ring systems.
- Heteroaryl groups include, but are not limited to, furyl, imidazolyl, pyrimidinyl, tetrazolyl, thienyl, pyridinyl, pyrrolyl, N-methylpyrrolyl, quinolinyl, isoquinolinyl, pyrazolyl, triazolyl, thiazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiadiazolyl, isothiazolyl, pyridazinyl, pyrazinyl, benzofuranyl, benzodioxolyl, benzothiophenyl, indolyl, indazolyl, benzimidazolyl, imidazopyridinyl, pyrazolopyridinyl, and pyrazolopyrimidinyl.
- heteroaryl groups include, but are not limited to, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, thiophenyl, pyrazolyl, imidazolyl, benzo[d]oxazolyl, benzo[d]thiazolyl, quinolinyl, quinazolinyl, indazolyl, imidazo[1,2-b]pyridazinyl, imidazo[1,2-a]pyrazinyl, benzo[c][1,2,5]thiadiazolyl, benzo[c][1,2,5]oxadiazolyl, and pyrido[2,3-b]pyrazinyl.
- heterocycle or “heterocyclyl” as used herein can be used interchangeably and refer to single and multi-cyclic aromatic or non-aromatic ring systems in which at least one of the ring members is other than carbon.
- Heterocycle includes pyridine, pyrimidine, furan, thiophene, pyrrole, isoxazole, isothiazole, pyrazole, oxazole, thiazole, imidazole, oxazole, including, 1,2,3- oxadiazole, 1,2,5-oxadiazole and 1,3,4-oxadiazole, thiadiazole, including, 1,2,3-thiadiazole, 1,2,5-thiadiazole, and 1,3,4-thiadiazole, triazole, including, 1,2,3-triazole, 1,3,4-triazole, tetrazole, including 1,2,3,4-tetrazole and 1,2,4,5-tetrazole, pyridazine, pyrazine, triazine, including 1,
- heterocyclyl group can also be a C2 heterocyclyl, C2-C3 heterocyclyl, C2- C4 heterocyclyl, C2-C5 heterocyclyl, C2-C6 heterocyclyl, C2-C7 heterocyclyl, C2-C8 heterocyclyl, C2-C9 heterocyclyl, C2-C10 heterocyclyl, C2-C11 heterocyclyl, and the like up to and including a C2-C18 heterocyclyl.
- a C2 heterocyclyl comprises a group which has two carbon atoms and at least one heteroatom, including, but not limited to, aziridinyl, diazetidinyl, dihydrodiazetyl, oxiranyl, thiiranyl, and the like.
- a C5 heterocyclyl comprises a group which has five carbon atoms and at least one heteroatom, including, but not limited to, piperidinyl, tetrahydropyranyl, tetrahydrothiopyranyl, diazepanyl, pyridinyl, and the like.
- bicyclic heterocycle or “bicyclic heterocyclyl” as used herein refers to a ring system in which at least one of the ring members is other than carbon.
- Bicyclic heterocyclyl encompasses ring systems wherein an aromatic ring is fused with another aromatic ring, or wherein an aromatic ring is fused with a non-aromatic ring.
- Bicyclic heterocyclyl encompasses ring systems wherein a benzene ring is fused to a 5- or a 6- membered ring containing 1, 2 or 3 ring heteroatoms or wherein a pyridine ring is fused to a 5- or a 6-membered ring containing 1, 2 or 3 ring heteroatoms.
- Bicyclic heterocyclic groups include, but are not limited to, indolyl, indazolyl, pyrazolo[1,5-a]pyridinyl, benzofuranyl, quinolinyl, quinoxalinyl, 1,3-benzodioxolyl, 2,3-dihydro-1,4-benzodioxinyl, 3,4-dihydro-2H- chromenyl, 1H-pyrazolo[4,3-c]pyridin-3-yl; 1H-pyrrolo[3,2-b]pyridin-3-yl; and 1H- pyrazolo[3,2-b]pyridin-3-yl.
- heterocycloalkyl refers to an aliphatic, partially unsaturated or fully saturated, 3- to 14-membered ring system, including single rings of 3 to 8 atoms and bi- and tricyclic ring systems.
- the heterocycloalkyl ring-systems include one to four heteroatoms independently selected from oxygen, nitrogen, and sulfur, wherein a nitrogen and sulfur heteroatom optionally can be oxidized and a nitrogen heteroatom optionally can be substituted.
- heterocycloalkyl groups include, but are not limited to, pyrrolidinyl, pyrazolinyl, pyrazolidinyl, imidazolinyl, imidazolidinyl, piperidinyl, piperazinyl, oxazolidinyl, isoxazolidinyl, morpholinyl, thiazolidinyl, isothiazolidinyl, and tetrahydrofuryl.
- hydroxyl or “hydroxyl” as used herein is represented by the formula — OH.
- ketone as used herein is represented by the formula A 1 C(O)A 2 , where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- a 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- Azide or “azido” as used herein is represented by the formula —N 3 .
- nitro as used herein is represented by the formula —NO2.
- nitrile or “cyano” as used herein is represented by the formula —CN.
- sil as used herein is represented by the formula —SiA 1 A 2 A 3 , where A 1 , A 2 , and A 3 can be, independently, hydrogen or an alkyl, cycloalkyl, alkoxy, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- sulfo-oxo is represented by the formulas —S(O)A 1 , — S(O)2A 1 , —OS(O)2A 1 , or —OS(O)2OA 1 , where A 1 can be hydrogen or an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- sulfonyl is used herein to refer to the sulfo-oxo group represented by the formula —S(O) 2 A 1 , where A 1 can be hydrogen or an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- a 1 S(O)2A 2 is represented by the formula A 1 S(O)2A 2 , where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- sulfoxide as used herein is represented by the formula A 1 S(O)A 2 , where A 1 and A 2 can be, independently, an alkyl, cycloalkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkynyl, aryl, or heteroaryl group as described herein.
- thiol as used herein is represented by the formula —SH.
- R 1 ,” “R 2 ,” “R 3 ,” “R n ,” where n is an integer, as used herein can, independently, possess one or more of the groups listed above.
- R 1 is a straight chain alkyl group
- one of the hydrogen atoms of the alkyl group can optionally be substituted with a hydroxyl group, an alkoxy group, an alkyl group, a halide, and the like.
- a first group can be incorporated within second group or, alternatively, the first group can be pendant (i.e., attached) to the second group.
- an alkyl group comprising an amino group the amino group can be incorporated within the backbone of the alkyl group. Alternatively, the amino group can be attached to the backbone of the alkyl group. The nature of the group(s) that is (are) selected will determine if the first group is embedded or attached to the second group.
- peptides of the invention may contain “optionally substituted” moieties. In general, the term “substituted,” whether preceded by the term “optionally” or not, means that one or more hydrogen of the designated moiety are replaced with a suitable substituent.
- an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
- Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible peptides.
- individual substituents can be further optionally substituted (i.e., further substituted or unsubstituted).
- stable refers to peptides that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain aspects, their recovery, purification, and use for one or more of the purposes disclosed herein.
- Suitable monovalent substituents on R ⁇ are independently halogen, –(CH2)0–2R ⁇ , –(haloR ⁇ ), –(CH2)0–2OH, –(CH2)0–2OR ⁇ , –(CH2)0–2CH(OR ⁇ )2; -O(haloR ⁇ ), –CN, –N 3 , –(CH 2 ) 0–2 C(O)R ⁇ , –(CH 2 ) 0–2 C(O)OH, –(CH 2 ) 0–2 C(O)OR ⁇ , –(CH 2 ) 0– 2SR ⁇ , –(CH2)0–2SH, –(CH2)0–2NH2, –(CH2)0–2NHR ⁇ , –(CH2)0–2NR ⁇ 2, –NO2,
- Suitable divalent substituents that are bound to vicinal substitutable carbons of an “optionally substituted” group include: –O(CR * 2)2–3O–, wherein each independent occurrence of R * is selected from hydrogen, C 1–6 aliphatic which may be substituted as defined below, or an unsubstituted 5–6–membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
- Suitable substituents on the aliphatic group of R * include halogen, –R ⁇ , -(haloR ⁇ ), -OH, –OR ⁇ , –O(haloR ⁇ ), –CN, –C(O)OH, –C(O)OR ⁇ , –NH2, –NHR ⁇ , –NR ⁇ 2, or –NO2, wherein each R ⁇ is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C1–4 aliphatic, –CH2Ph, –O(CH2)0–1Ph, or a 5–6– membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
- Suitable substituents on a substitutable nitrogen of an “optionally substituted” group include –R ⁇ , –NR ⁇ 2, –C(O)R ⁇ , –C(O)OR ⁇ , –C(O)C(O)R ⁇ , –C(O)CH2C(O)R ⁇ , –S(O)2R ⁇ , -S(O) 2 NR ⁇ 2 , –C(S)NR ⁇ 2 , –C(NH)NR ⁇ 2 , or –N(R ⁇ )S(O) 2 R ⁇ ; wherein each R ⁇ is independently hydrogen, C1–6 aliphatic which may be substituted as defined below, unsubstituted –OPh, or an unsubstituted 5–6–membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above,
- Suitable substituents on the aliphatic group of R ⁇ are independently halogen, –R , ⁇ -(haloR ⁇ ), –OH, –OR ⁇ , –O(haloR ), –CN, ⁇ –C(O)OH, –C(O)OR , –NH2, –NHR ⁇ , –NR 2, or ⁇ ⁇ –NO 2 , wherein each R ⁇ is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C1–4 aliphatic, –CH2Ph, –O(CH2)0–1Ph, or a 5–6– membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
- the term “leaving group” refers to an atom (or a group of atoms) with electron withdrawing ability that can be displaced as a stable species, taking with it the bonding electrons.
- suitable leaving groups include halides and sulfonate esters, including, but not limited to, triflate, mesylate, tosylate, and brosylate.
- the terms “hydrolysable group” and “hydrolysable moiety” refer to a functional group capable of undergoing hydrolysis, e.g., under basic or acidic conditions.
- hydrolysable residues include, without limitation, acid halides, activated carboxylic acids, and various protecting groups known in the art (see, for example, “Protective Groups in Organic Synthesis,” T. W. Greene, P. G. M. Wuts, Wiley-Interscience, 1999).
- residue of a peptide as used with respect to the phrase “a surface covalently attached to a residue of a disclosed peptide,” means the portion of the peptide that remains after the peptide is covalently attached to, for example, the surface.
- the residue of the peptide can refer to the peptide minus an atom or group of atoms at the N-terminus of the peptide such as, for example, a proton.
- organic residue defines a carbon-containing residue, i.e., a residue comprising at least one carbon atom, and includes but is not limited to the carbon-containing groups, residues, or radicals defined hereinabove.
- Organic residues can contain various heteroatoms, or be bonded to another molecule through a heteroatom, including oxygen, nitrogen, sulfur, phosphorus, or the like.
- organic residues include but are not limited alkyl or substituted alkyls, alkoxy or substituted alkoxy, mono or di-substituted amino, amide groups, etc.
- Organic residues can preferably comprise 1 to 18 carbon atoms, 1 to 15, carbon atoms, 1 to 12 carbon atoms, 1 to 8 carbon atoms, 1 to 6 carbon atoms, or 1 to 4 carbon atoms.
- an organic residue can comprise 2 to 18 carbon atoms, 2 to 15, carbon atoms, 2 to 12 carbon atoms, 2 to 8 carbon atoms, 2 to 4 carbon atoms, or 2 to 4 carbon atoms.
- Peptides described herein can contain one or more double bonds and, thus, potentially give rise to cis/trans (E/Z) isomers, as well as other conformational isomers. Unless stated to the contrary, the invention includes all such possible isomers, as well as mixtures of such isomers. [00133] Unless stated to the contrary, a formula with chemical bonds shown only as solid lines and not as wedges or dashed lines contemplates each possible isomer, e.g., each enantiomer and diastereomer, and a mixture of isomers, such as a racemic or scalemic mixture. Peptides described herein can contain one or more asymmetric centers and, thus, potentially give rise to diastereomers and optical isomers.
- the present invention includes all such possible diastereomers as well as their racemic mixtures, their substantially pure resolved enantiomers, all possible geometric isomers, and pharmaceutically acceptable salts thereof. Mixtures of stereoisomers, as well as isolated specific stereoisomers, are also included. During the course of the synthetic procedures used to prepare such compounds, or in using racemization or epimerization procedures known to those skilled in the art, the products of such procedures can be a mixture of stereoisomers. [00134] Many organic compounds (e.g., peptides) exist in optically active forms having the ability to rotate the plane of plane-polarized light.
- the prefixes D and L or R and S are used to denote the absolute configuration of the molecule about its chiral center(s).
- the prefixes d and l or (+) and (-) are employed to designate the sign of rotation of plane-polarized light by the compound, with (-) or meaning that the compound is levorotatory.
- a compound prefixed with (+) or d is dextrorotatory.
- these compounds, called stereoisomers are identical except that they are non-superimposable mirror images of one another.
- a specific stereoisomer can also be referred to as an enantiomer, and a mixture of such isomers is often called an enantiomeric mixture.
- a 50:50 mixture of enantiomers is referred to as a racemic mixture.
- Many of the compounds described herein can have one or more chiral centers and therefore can exist in different enantiomeric forms.
- a chiral carbon can be designated with an asterisk (*).
- bonds to the chiral carbon are depicted as straight lines in the disclosed formulas, it is understood that both the (R) and (S) configurations of the chiral carbon, and hence both enantiomers and mixtures thereof, are embraced within the formula.
- one of the bonds to the chiral carbon can be depicted as a wedge (bonds to atoms above the plane) and the other can be depicted as a series or wedge of short parallel lines is (bonds to atoms below the plane).
- the Cahn-Ingold-Prelog system can be used to assign the (R) or (S) configuration to a chiral carbon. [00135] When the disclosed peptides contain one chiral center, the peptides exist in two enantiomeric forms.
- a disclosed peptide includes both enantiomers and mixtures of enantiomers, such as the specific 50:50 mixture referred to as a racemic mixture.
- the enantiomers can be resolved by methods known to those skilled in the art, such as formation of diastereoisomeric salts that may be separated, for example, by crystallization (see, CRC Handbook of Optical Resolutions via Diastereomeric Salt Formation by David Kozma (CRC Press, 2001)); formation of diastereoisomeric derivatives or complexes that may be separated, for example, by crystallization, gas-liquid or liquid chromatography; selective reaction of one enantiomer with an enantiomer-specific reagent, for example enzymatic esterification; or gas-liquid or liquid chromatography in a chiral environment, for example on a chiral support for example silica with a bound chiral ligand or in the presence of a chiral solvent.
- a further step can liberate the desired enantiomeric form.
- specific enantiomers can be synthesized by asymmetric synthesis using optically active reagents, substrates, catalysts or solvents, or by converting one enantiomer into the other by asymmetric transformation.
- Designation of a specific absolute configuration at a chiral carbon in a disclosed peptide is understood to mean that the designated enantiomeric form of the peptides can be provided in enantiomeric excess (e.e.).
- Enantiomeric excess is the presence of a particular enantiomer at greater than 50%, for example, greater than 60%, greater than 70%, greater than 75%, greater than 80%, greater than 85%, greater than 90%, greater than 95%, greater than 98%, or greater than 99%.
- the designated enantiomer is substantially free from the other enantiomer.
- the “R” forms of the peptides can be substantially free from the “S” forms of the peptides and are, thus, in enantiomeric excess of the “S” forms.
- “S” forms of the peptides can be substantially free of “R” forms of the peptides and are, thus, in enantiomeric excess of the “R” forms.
- a disclosed peptide or compound can have more than two optical isomers and can exist in diastereoisomeric forms.
- the peptide or compound can have up to four optical isomers and two pairs of enantiomers ((S,S)/(R,R) and (R,S)/(S,R)).
- the pairs of enantiomers e.g., (S,S)/(R,R) are mirror image stereoisomers of one another.
- the stereoisomers that are not mirror-images are diastereomers.
- the diastereoisomeric pairs can be separated by methods known to those skilled in the art, for example chromatography or crystallization and the individual enantiomers within each pair may be separated as described above.
- a disclosed peptide or compound includes each diastereoisomer of such peptides or compounds and mixtures thereof.
- the peptides according to this disclosure may form prodrugs at hydroxyl or amino functionalities using alkoxy, amino acids, etc., groups as the prodrug forming moieties.
- the hydroxymethyl position may form mono-, di- or triphosphates and again these phosphates can form prodrugs.
- Preparations of such prodrug derivatives are discussed in various literature sources (examples are: Alexander et al., J. Med. Chem.1988, 31, 318; Aligas-Martin et al., PCT WO 2000/041531, p.30).
- the nitrogen function converted in preparing these derivatives is one (or more) of the nitrogen atoms of a compound of the disclosure.
- “Derivatives” of the peptides disclosed herein are pharmaceutically acceptable salts, prodrugs, deuterated forms, radio-actively labeled forms, isomers, solvates and combinations thereof.
- radio-actively labeled forms include peptides labeled with tritium, phosphorous-32, iodine-129, carbon-11, fluorine-18, and the like.
- Peptides described herein comprise atoms in both their natural isotopic abundance and in non-natural abundance.
- the disclosed peptides can be isotopically-labeled or isotopically-substituted peptides identical to those described, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number typically found in nature.
- isotopes that can be incorporated into peptides of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine and chlorine, such as 2 H, 3 H, 13 C, 14 C, 15 N, 18 O, 17 O, 35 S, 18 F and 36 Cl, respectively.
- Isotopically labeled peptides of the present invention and prodrugs thereof can generally be prepared by carrying out the procedures below, by substituting a readily available isotopically labeled reagent for a non-isotopically labeled reagent.
- the peptides described in the invention can be present as a solvate.
- the solvent used to prepare the solvate is an aqueous solution, and the solvate is then often referred to as a hydrate.
- the peptides can be present as a hydrate, which can be obtained, for example, by crystallization from a solvent or from aqueous solution.
- one, two, three or any arbitrary number of solvent or water molecules can combine with the peptides according to the invention to form solvates and hydrates.
- the invention includes all such possible solvates.
- co-crystal means a physical association of two or more molecules which owe their stability through non-covalent interaction.
- One or more components of this molecular complex provide a stable framework in the crystalline lattice.
- the guest molecules are incorporated in the crystalline lattice as anhydrates or solvates, see e.g. “Crystal Engineering of the Composition of Pharmaceutical Phases.
- pyrazoles can exist in two tautomeric forms, N 1 -unsubstituted, 3-A 3 and N 1 -unsubstituted, 5-A 3 as shown below. Unless stated to the contrary, the invention includes all such possible tautomers.
- polymorphic forms or modifications The different modifications of a polymorphic substance can differ greatly in their physical properties.
- the compounds according to the invention can be present in different polymorphic forms, with it being possible for particular modifications to be metastable. Unless stated to the contrary, the invention includes all such possible polymorphic forms.
- a structure of a peptide can include a group represented by a formula: , which is understood to be equivalent to a formula: , wherein n is typically an integer. That is, R n is understood to represent five independent substituents, R n(a) , R n(b) , R n(c) , R n(d) , R n(e) .
- independent substituents it is meant that each R substituent can be independently defined. For example, if in one instance R n(a) is halogen, then R n(b) is not necessarily halogen in that instance.
- Certain materials, peptides, compositions, and components disclosed herein can be obtained commercially or readily synthesized using techniques generally known to those of skill in the art.
- the starting materials and reagents used in preparing the disclosed peptides and compositions are either available from commercial suppliers such as Aldrich Chemical Co., (Milwaukee, Wis.), Acros Organics (Morris Plains, N.J.), Strem Chemicals (Newburyport, MA), Fisher Scientific (Pittsburgh, Pa.), or Sigma (St.
- A-D a class of molecules A, B, and C are disclosed as well as a class of molecules D, E, and F and an example of a combination molecule, A-D is disclosed, then even if each is not individually recited each is individually and collectively contemplated meaning combinations, A-E, A-F, B-D, B-E, B-F, C-D, C-E, and C-F are considered disclosed. Likewise, any subset or combination of these is also disclosed. Thus, for example, the sub-group of A-E, B-F, and C-E would be considered disclosed. This concept applies to all aspects of this application including, but not limited to, steps in methods of making and using the compositions of the invention.
- compositions disclosed herein have certain functions. Disclosed herein are certain structural requirements for performing the disclosed functions, and it is understood that there are a variety of structures that can perform the same function that are related to the disclosed structures, and that these structures will typically achieve the same result. B.
- PEPTIDES [00151]
- peptides comprising alanine residues and glycosylated residues (e.g., glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues) in a particular ratio (e.g., from about 3:2 to about 4:1), wherein the peptide has a minumum chain length, such as, for example a chain length of at least 30 amino acids.
- alanine residues and glycosylated residues e.g., glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues
- a particular ratio e.g., from about 3:2 to about 4:1
- the disclosed peptides beneficially inhibit ice crystal formation, and, therefore, offer utility in a wide range of applications, including, but not limited to biomedical cryopreservation, food technology, agriculture, cosmetics, and building materials.
- the disclosed peptides exhibit inhibition of ice crystal formation in a sample, as further described herein.
- inhibition of ice crystal formation can be measured by, for example, ice recrystallization inhibition (IRI) and reduction in crystal mean grain size (MGS).
- the disclosed peptides reduce crystal MGS by at least about 10%, about 20%, about 25%, about 30%, about 40%, about 50%, about 60%, about 65%, about 70%, about 75%, or more than about 75%.
- the disclosed peptides alter the shape of ice crystals that are formed in the sample such that the majority of the ice crystals present in the sample are hexagonal, square, and/or amorphous crystals (as opposed to spicular crystals).
- At least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, or more than 90% of the ice crystals present in the sample are hexagonal, square, and/or amorphous crystals.
- the disclosed peptides are useful in delaying, preventing, or otherwise decreasing ice crystal formation in a sample, as further described herein.
- each disclosed derivative can be optionally further substituted. It is also contemplated that any one or more derivative can be optionally omitted from the invention. It is understood that a disclosed peptide can be provided by the disclosed methods.
- peptides comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- the peptide consists essentially of the plurality of alanine residues and the plurality of glycosylated residues.
- the plurality of alanine residues is present in the peptide in an amount of about 70 wt% or less. In a further aspect, the plurality of alanine residues is present in the peptide in an amount of about 69 wt% or less. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 68 wt% or less. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of about 67 wt% or less.
- the plurality of alanine residues is present in the peptide in an amount of about 66 wt% or less. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 65 wt% or less. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of about 64 wt% or less. In an even further aspect, the plurality of alanine residues is present in the peptide in an amount of about 63 wt% or less. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 62 wt% or less.
- the plurality of alanine residues is present in the peptide in an amount of about 61 wt% or less. In an even further aspect, the plurality of alanine residues is present in the peptide in an amount of about 60 wt% or less [00158] In various aspects, the plurality of alanine residues is present in the peptide in an amount of from about 60 wt% to about 70 wt%. In a further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 60 wt% to about 68 wt%.
- the plurality of alanine residues is present in the peptide in an amount of from about 60 wt% to about 66 wt%. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 60 wt% to about 64 wt%. In an even further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 60 wt% to about 62 wt%. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 62 wt% to about 70 wt%.
- the plurality of alanine residues is present in the peptide in an amount of from about 64 wt% to about 70 wt%. In an even further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 66 wt% to about 70 wt%. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 68 wt% to about 70 wt%. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 62 wt% to about 68 wt%.
- the plurality of alanine residues is present in the peptide in an amount of from about 64 wt% to about 66 wt%. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of from about 65 wt% to about 67 wt%. [00159] In various aspects, the plurality of alanine residues is present in the peptide in an amount of about 60 wt%. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 61 wt%.
- the plurality of alanine residues is present in the peptide in an amount of about 62 wt%. In an even further aspect, the plurality of alanine residues is present in the peptide in an amount of about 63 wt%. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 64 wt%. In yet a further aspect, the plurality of alanine residues is present in the peptide in an amount of about 65 wt%. In even further aspect, the plurality of alanine residues is present in the peptide in an amount of about 66 wt%.
- the plurality of alanine residues is present in the peptide in an amount of about 67 wt%. In an even yet further aspect, the plurality of alanine residues is present in the peptide in an amount of about 68 wt%. In a further aspect, the plurality of alanine residues is present in the peptide in an amount of about 69 wt%. In a still further aspect, the plurality of alanine residues is present in the peptide in an amount of about 70 wt%.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; and contains less than 36 sequential Ala-Ala-Thr repeating units.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; and contains less than 36 sequential Ala-Ala-Ser repeating units.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; and the plurality of glycosylated residues are glycosylated threonine residues.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; and the plurality of glycosylated residues are glycosylated serine residues.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; the peptide contains less than 36 sequential Ala-Ala-Thr repeating units; and the plurality of glycosylated residues are glycosylated threonine residues.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; the peptide contains less than 36 sequential Ala-Ala-Ser repeating units; and the plurality of glycosylated residues are glycosylated serine residues.
- the peptide comprising a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, wherein the peptide has a chain length of at least 30 amino acid residues; the peptide contains less than 36 sequential Ala-Ala-Thr repeating units; and the plurality of glycosylated residues are a mixture of glycosylated threonine residues and glycosylated serine residues.
- the peptide contains less than 36 sequential Ala-Ala-Thr repeating units. In a further aspect, the peptide contains less than 35 sequential Ala-Ala-Thr repeating units. In a still further aspect, the peptide contains less than 34 sequential Ala-Ala- Thr repeating units. In yet a further aspect, the peptide contains less than 33 sequential Ala- Ala-Thr repeating units. In an even further aspect, the peptide contains less than 32 sequential Ala-Ala-Thr repeating units. In a still even further aspect, the peptide contains less than 31 sequential Ala-Ala-Thr repeating units. In yet an even further aspect, the peptide contains less than 30 sequential Ala-Ala-Thr repeating units.
- the peptide contains less than 29 sequential Ala-Ala-Thr repeating units. In a still further aspect, the peptide contains less than 28 sequential Ala-Ala-Thr repeating units. In yet a further aspect, the peptide contains less than 27 sequential Ala-Ala-Thr repeating units. In an even further aspect, the peptide contains less than 26 sequential Ala-Ala-Thr repeating units. In a still even further aspect, the peptide contains less than 25 sequential Ala-Ala-Thr repeating units. In yet an even further aspect, the peptide contains less than 24 sequential Ala-Ala-Thr repeating units. In a further aspect, the peptide contains less than 23 sequential Ala-Ala-Thr repeating units.
- the peptide contains less than 22 sequential Ala-Ala-Thr repeating units. In yet a further aspect, the peptide contains less than 21 sequential Ala-Ala- Thr repeating units. In an even further aspect, the peptide contains less than 20 sequential Ala-Ala-Thr repeating units. In a still even further aspect, the peptide contains less than 19 sequential Ala-Ala-Thr repeating units. In yet an even further aspect, the peptide contains less than 18 sequential Ala-Ala-Thr repeating units. In a further aspect, the peptide contains less than 17 sequential Ala-Ala-Thr repeating units. In a still further aspect, the peptide contains less than 16 sequential Ala-Ala-Thr repeating units.
- the peptide contains less than 15 sequential Ala-Ala-Thr repeating units. In an even further aspect, the peptide contains less than 14 sequential Ala-Ala-Thr repeating units. In a still even further aspect, the peptide contains less than 13 sequential Ala-Ala-Thr repeating units. In yet an even further aspect, the peptide contains less than 12 sequential Ala-Ala-Thr repeating units. In a further aspect, the peptide contains less than 11 sequential Ala-Ala-Thr repeating units. In a still further aspect, the peptide contains less than 10 sequential Ala-Ala-Thr repeating units. [00168] In various aspects, the peptide contains less than 36 sequential Ala-Ala-Ser repeating units.
- the peptide contains less than 35 sequential Ala-Ala-Ser repeating units. In a still further aspect, the peptide contains less than 34 sequential Ala-Ala- Ser repeating units. In yet a further aspect, the peptide contains less than 33 sequential Ala- Ala-Ser repeating units. In an even further aspect, the peptide contains less than 32 sequential Ala-Ala-Ser repeating units. In a still even further aspect, the peptide contains less than 31 sequential Ala-Ala-Ser repeating units. In yet an even further aspect, the peptide contains less than 30 sequential Ala-Ala-Ser repeating units.
- the peptide contains less than 29 sequential Ala-Ala-Ser repeating units. In a still further aspect, the peptide contains less than 28 sequential Ala-Ala-Ser repeating units. In yet a further aspect, the peptide contains less than 27 sequential Ala-Ala-Ser repeating units. In an even further aspect, the peptide contains less than 26 sequential Ala-Ala-Ser repeating units. In a still even further aspect, the peptide contains less than 25 sequential Ala-Ala-Ser repeating units. In yet an even further aspect, the peptide contains less than 24 sequential Ala-Ala-Ser repeating units.
- the peptide contains less than 23 sequential Ala-Ala-Ser repeating units. In a still further aspect, the peptide contains less than 22 sequential Ala-Ala-Ser repeating units. In yet a further aspect, the peptide contains less than 21 sequential Ala-Ala- Ser repeating units. In an even further aspect, the peptide contains less than 20 sequential Ala-Ala-Ser repeating units. In a still even further aspect, the peptide contains less than 19 sequential Ala-Ala-Ser repeating units. In yet an even further aspect, the peptide contains less than 18 sequential Ala-Ala-Ser repeating units.
- the peptide contains less than 17 sequential Ala-Ala-Ser repeating units. In a still further aspect, the peptide contains less than 16 sequential Ala-Ala-Ser repeating units. In yet a further aspect, the peptide contains less than 15 sequential Ala-Ala-Ser repeating units. In an even further aspect, the peptide contains less than 14 sequential Ala-Ala-Ser repeating units. In a still even further aspect, the peptide contains less than 13 sequential Ala-Ala-Ser repeating units. In yet an even further aspect, the peptide contains less than 12 sequential Ala-Ala-Ser repeating units.
- the peptide contains less than 11 sequential Ala-Ala-Ser repeating units. In a still further aspect, the peptide contains less than 10 sequential Ala-Ala-Ser repeating units.
- the plurality of glycosylated residues are glycosylated threonine residues.
- the plurality of glycosylated residues are glycosylated serine residues.
- the plurality of glycosylated residues are a mixture of glycosylated threonine residues and glycosylated serine residues.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ GalNAc, ⁇ GalNAc, ⁇ Gal(1 ⁇ 3) ⁇ GalNAc, ⁇ Lac, and ⁇ Lac.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ GalNAc, ⁇ GalNAc, andr ⁇ Gal(1 ⁇ 3) ⁇ GalNAc.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ GalNAc, ⁇ GalNAc, ⁇ Lac, and ⁇ Lac.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ Gal(1 ⁇ 3) ⁇ GalNAc, ⁇ Lac, or ⁇ Lac.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, and ⁇ Gal(1 ⁇ 3) ⁇ GalNAc.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ GalNAc, ⁇ GalNAc, and ⁇ Gal(1 ⁇ 3) ⁇ GalNAc. In a still further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal(1 ⁇ 3) ⁇ GalNAc, ⁇ Lac, and ⁇ Lac. In yet a further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ GalNAc, and ⁇ GalNAc.
- the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal, ⁇ Gal, ⁇ Lac, and ⁇ Lac. In a still further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ GalNAc, ⁇ GalNAc, ⁇ Lac, and ⁇ Lac. In yet a further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ Gal and ⁇ Gal. In an even further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ GalNAc and ⁇ GalNAc.
- the plurality of glycosylated residues are glycosylated with ⁇ Gal(1 ⁇ 3) ⁇ GalNAc. In a yet even further aspect, the plurality of glycosylated residues are glycosylated with one or more of ⁇ Lac and ⁇ Lac. [00173] In various aspects, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1. In a further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 19:11 to about 4:1.
- the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 2:1 to about 4:1. In a yet further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 21:9 to about 4:1. In an even further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 11:4 to about 4:1. In an even still further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 23:7 to about 4:1.
- the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 23:7 to about 4:1. In a further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 23:7. In a still further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 11:4. In a yet further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 21:9.
- the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 2:1. In an even still further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 19:11. In an even yet further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 19:11 to about 23:7. In a further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 2:1 to about 11:4.
- the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 21:9 to about 11:4. [00174] In various aspects, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 3:2. In a further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 19:11. In a still further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 2:1. In a yet further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 21:9.
- the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 11:4. In an even still further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 23:7. In an even yet further aspect, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 4:1. [00175] In various aspects, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is not about 2:1. [00176] In various aspects, the ratio of the plurality of alanine residues to the plurality of glycosylated residues is about 1:1 or about 1:2.
- the peptide has a chain length of at least 30 amino acid residues. In a further aspect, the peptide has a chain length of at least 40 amino acid residues. In a still further aspect, the peptide has a chain length of at least 50 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 60 amino acid residues. In an even further aspect, the peptide has a chain length of at least 70 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 80 amino acid residues. In an even yet further aspect, the peptide has a chain length of at least 90 amino acid residues.
- the peptide has a chain length of at least 100 amino acid residues. In a still further aspect, the peptide has a chain length of at least 110 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 120 amino acid residues. In an even further aspect, the peptide has a chain length of at least 130 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 140 amino acid residues. In even yet further aspect, the peptide has a chain length of at least 150 amino acid residues. In a further aspect, the peptide has a chain length of at least 160 amino acid residues.
- the peptide has a chain length of at least 170 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 180 amino acid residues. In an even further aspect, the peptide has a chain length of at least 190 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 200 amino acid residues. In an even yet further aspect, the peptide has a chain length of at least 210 amino acid residues. In a further aspect, the peptide has a chain length of at least 220 amino acid residues. In a still further aspect, the peptide has a chain length of at least 230 amino acid residues.
- the peptide has a chain length of at least 240 amino acid residues. In an even further aspect, the peptide has a chain length of at least 250 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 260 amino acid residues. In even yet further aspect, the peptide has a chain length of at least 270 amino acid residues. In a further aspect, the peptide has a chain length of at least 280 amino acid residues. In a still further aspect, the peptide has a chain length of at least 290 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 300 amino acid residues.
- the peptide has a chain length of at least 310 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 320 amino acid residues. In an even yet further aspect, the peptide has a chain length of at least 330 amino acid residues. In a further aspect, the peptide has a chain length of at least 330 amino acid residues. In a still further aspect, the peptide has a chain length of at least 340 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 350 amino acid residues. In an even further aspect, the peptide has a chain length of at least 360 amino acid residues.
- the peptide has a chain length of at least 370 amino acid residues. In even yet further aspect, the peptide has a chain length of at least 380 amino acid residues. In a further aspect, the peptide has a chain length of at least 390 amino acid residues. In a still further aspect, the peptide has a chain length of at least 400 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 410 amino acid residues. In an even further aspect, the peptide has a chain length of at least 420 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 430 amino acid residues.
- the peptide has a chain length of at least 440 amino acid residues. In a further aspect, the peptide has a chain length of at least 450 amino acid residues. In a still further aspect, the peptide has a chain length of at least 460 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 470 amino acid residues. In an even further aspect, the peptide has a chain length of at least 480 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 490 amino acid residues. In even yet further aspect, the peptide has a chain length of at least 500 amino acid residues.
- the peptide has a chain length of from about 30 amino acid residues to about 500 amino acid residues. In a further aspect, the peptide has a chain length of from about 50 amino acid residues to about 500 amino acid residues. In a still further aspect, the peptide has a chain length of from about 100 amino acid residues to about 500 amino acid residues. In a yet further aspect, the peptide has a chain length of from about 200 amino acid residues to about 500 amino acid residues. In an even further aspect, the peptide has a chain length of from about 300 amino acid residues to about 500 amino acid residues. In an even still further aspect, the peptide has a chain length of from about 40 amino acid residues to about 500 amino acid residues.
- the peptide has a chain length of from about 30 amino acid residues to about 400 amino acid residues. In a further aspect, the peptide has a chain length of from about 30 amino acid residues to about 300 amino acid residues. In a still further aspect, the peptide has a chain length of from about 30 amino acid residues to about 200 amino acid residues. In a yet further aspect, the peptide has a chain length of from about 30 amino acid residues to about 100 amino acid residues. In an even further aspect, the peptide has a chain length of from about 30 amino acid residues to about 50 amino acid residues. In an even still further aspect, the peptide has a chain length of from about 50 amino acid residues to about 400 amino acid residues.
- the peptide has a chain length of from about 100 amino acid residues to about 300 amino acid residues. In a further aspect, the peptide has a chain length of from about about 50 residues to about 100 residues. In a still further aspect, the peptide has a chain length of from about 100 amino acid residues to about 150 amino acid residues. In a yet further aspect, the peptide has a chain length of from about 150 amino acid residues to about 200 amino acid residues. In an even further aspect, the peptide has a chain length of from about 200 amino acid residues to about 250 amino acid residues. In an even still further aspect, the peptide has a chain length of from about 250 amino acid residues to about 300 amino acid residues.
- the peptide has a chain length of from about 300 amino acid residues to about 350 amino acid residues. In a further aspect, the peptide has a chain length of from about 350 amino acid residues to about 400 amino acid residues. In a still further aspect, the peptide has a chain length of from about 400 amino acid residues to about 450 amino acid residues. In a yet further aspect, the peptide has a chain length of from about 450 amino acid residues to about 500 amino acid residues. In an even further aspect, the peptide has a chain length of from about 125 amino acid residues to about 275 amino acid residues.
- the peptide has a chain length of from about 150 amino acid residues to about 250 amino acid residues. In even yet further aspect, the peptide has a chain length of from about 175 amino acid residues to about 225 amino acid residues. [00179] In various aspects, the peptide has a number average molecular weight (M n ) of at least about 3,000. In a further aspect, the peptide has a number average molecular weight (M n ) of at least about 4,000. In a still further aspect, the peptide has a number average molecular weight (Mn) of at least about 5,000.
- the peptide has a number average molecular weight (M n ) of at least about 6,000. In an even further aspect, the peptide has a number average molecular weight (Mn) of at least about 7,000. In an even still further aspect, the peptide has a number average molecular weight (M n ) of at least about 8,000. In an even yet further aspect, the peptide has a number average molecular weight (M n ) of at least about 9,000. In a further aspect, the peptide has a number average molecular weight (M n ) of at least about 10,000. In a still further aspect, the peptide has a number average molecular weight (M n ) of at least about 11,000.
- the peptide has a number average molecular weight (M n ) of at least about 12,000. In an even further aspect, the peptide has a number average molecular weight (M n ) of at least about 13,000. In an even still further aspect, the peptide has a number average molecular weight (M n ) of at least about 14,000. In an even yet further aspect, the peptide has a number average molecular weight (M n ) of at least about 15,000. In a further aspect, the peptide has a number average molecular weight (Mn) of at least about 20,000. In a still further aspect, the peptide has a number average molecular weight (M n ) of at least about 25,000.
- the peptide has a number average molecular weight (Mn) of at least about 30,000. In an even further aspect, the peptide has a number average molecular weight (M n ) of at least about 35,000. In an even still further aspect, the peptide has a number average molecular weight (M n ) of at least about 40,000. In an even yet further aspect, the peptide has a number average molecular weight (Mn) of at least about 45,000. In a further aspect, the peptide has a number average molecular weight (M n ) of at least about 50,000.
- the peptide has a number average molecular weight (Mn) of from about 3,000 to about 50,000. In a further aspect, the peptide has a number average molecular weight (Mn) of from about 5,000 to about 45,000. In a still further aspect, the peptide has a number average molecular weight (M n ) of from about 10,000 to about 40,000. In a yet further aspect, the peptide has a number average molecular weight (Mn) of from about 15,000 to about 35,000. In an even further aspect, the peptide has a number average molecular weight (Mn) of from about 20,000 to about 30,000.
- the peptide has a number average molecular weight (M n ) of from about 3,000 to about 5,000. In an even yet further aspect, the peptide has a number average molecular weight (Mn) of from about 3,000 to about 10,000. In a further aspect, the peptide has a number average molecular weight (Mn) of from about 3,000 to about 15,000. In a still further aspect, the peptide has a number average molecular weight (M n ) of from about 3,000 to about 20,000. In a yet further aspect, the peptide has a number average molecular weight (Mn) of from about 3,000 to about 25,000.
- the peptide has a number average molecular weight (M n ) of from about 3,000 to about 30,000. In an even still further aspect, the peptide has a number average molecular weight (M n ) of from about 3,000 to about 35,000. In an even yet further aspect, the peptide has a number average molecular weight (M n ) of from about 30,000 to about 40,000. In a further aspect, the peptide has a number average molecular weight (M n ) of from about 3,000 to about 45,000. In a still further aspect, the peptide has a number average molecular weight (M n ) of from about 45,000 to about 50,000.
- the peptide has a number average molecular weight (M n ) of from about 40,000 to about 50,000. In an even further aspect, the peptide has a number average molecular weight (M n ) of from about 35,000 to about 50,000. In an even still further aspect, the peptide has a number average molecular weight (M n ) of from about 30,000 to about 50,000. In an even yet further aspect, the peptide has a number average molecular weight (M n ) of from about 25,000 to about 50,000. In a further aspect, the peptide has a number average molecular weight (Mn) of from about 20,000 to about 50,000.
- the peptide has a number average molecular weight (Mn) of from about 15,000 to about 50,000. In a yet further aspect, the peptide has a number average molecular weight (M n ) of from about 10,000 to about 50,000. In an even further aspect, the peptide has a number average molecular weight (Mn) of from about 5,000 to about 50,000. In an even still further aspect, the peptide has a number average molecular weight (Mn) of from about 10,000 to about 30,000. In an even yet further aspect, the peptide has a number average molecular weight (M n ) of from about 12,000 to about 28,000.
- the peptide has a number average molecular weight (Mn) of from about 14,000 to about 25,000. In a still further aspect, the peptide has a number average molecular weight (Mn) of from about 15,000 to about 23,000. In a yet further aspect, the peptide has a number average molecular weight (M n ) of from about 18,000 to about 22,000. In an even further aspect, the peptide has a number average molecular weight (Mn) of from about 19,000 to about 21,000. [00181] In various aspects, the peptide has a degree of polymerization (DP) of at least about 25. In a further aspect, the peptide has a degree of polymerization (DP) of at least about 30.
- DP degree of polymerization
- DP degree of polymerization
- the peptide has a degree of polymerization (DP) of at least about 40. In a yet further aspect, the peptide has a degree of polymerization (DP) of at least about 50. In an even further aspect, the peptide has a degree of polymerization (DP) of at least about 60. In an even still further aspect, the peptide has a degree of polymerization (DP) of at least about 70. In an even yet further aspect, the peptide has a degree of polymerization (DP) of at least about 80. In a further aspect, the peptide has a degree of polymerization (DP) of at least about 90.
- the peptide has a degree of polymerization (DP) of at least about 100. In a yet further aspect, the peptide has a degree of polymerization (DP) of at least about 110. In an even further aspect, the peptide has a degree of polymerization (DP) of at least about 112. In an even still further aspect, the peptide has a degree of polymerization (DP) of at least about 120. In even yet further aspect, the peptide has a degree of polymerization (DP) of at least about 130. In a further aspect, the peptide has a degree of polymerization (DP) of at least about 140.
- the peptide has a degree of polymerization (DP) of at least about 150. In a yet further aspect, the peptide has a degree of polymerization (DP) of at least about 160. In an even further aspect, the peptide has a degree of polymerization (DP) of at least about 170. In an even still further aspect, the peptide has a degree of polymerization (DP) of at least about 180. In an even yet further aspect, the peptide has a degree of polymerization (DP) of at least about 190. In a further aspect, the peptide has a degree of polymerization (DP) of at least about 200.
- the peptide has a chain length of at least 210 amino acid residues. In a yet further aspect, the peptide has a chain length of at least 220 amino acid residues. In an even further aspect, the peptide has a degree of polymerization (DP) of at least about 230. In an even still further aspect, the peptide has a degree of polymerization (DP) of at least about 240. In an even yet further aspect, the peptide has a degree of polymerization (DP) of at least about 250. In a further aspect, the peptide has a degree of polymerization (DP) of at least about 260. In a still further aspect, the peptide has a chain length of at least 270 amino acid residues.
- the peptide has a chain length of at least 280 amino acid residues. In an even further aspect, the peptide has a chain length of at least 290 amino acid residues. In an even still further aspect, the peptide has a chain length of at least 300 amino acid residues. [00182] In various aspects, the peptide has a degree of polymerization (DP) from about 30 to about 500. In a further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 450. In a still further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 400.
- the peptide has a degree of polymerization (DP) from about 30 to about 350. In an even further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 300. In an even still further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 250. In an even yet further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 200. In a further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 150. In a still further aspect, the peptide has a degree of polymerization (DP) from about 30 to about 100.
- the peptide has a degree of polymerization (DP) from about 30 to about 50. In an even further aspect, the peptide has a degree of polymerization (DP) from about 50 to about 500. In an even still further aspect, the peptide has a degree of polymerization (DP) from about 100 to about 500. In an even yet further aspect, the peptide has a degree of polymerization (DP) from about 150 to about 500. In a further aspect, the peptide has a degree of polymerization (DP) from about 200 to about 500. In a still further aspect, the peptide has a degree of polymerization (DP) from about 250 to about 500.
- the peptide has a degree of polymerization (DP) from about 300 to about 500. In an even further aspect, the peptide has a degree of polymerization (DP) from about 350 to about 500. In an even still further aspect, the peptide has a degree of polymerization (DP) from about 400 to about 500. In an even yet further aspect, the peptide has a degree of polymerization (DP) from about 450 to about 500. In a further aspect, the peptide has a degree of polymerization (DP) from about 50 to about 450. In a still further aspect, the peptide has a degree of polymerization (DP) from about 100 to about 400.
- the peptide has a degree of polymerization (DP) from about 150 to about 350. In an even further aspect, the peptide has a degree of polymerization (DP) from about 200 to about 300. In an even still further aspect, the peptide has a degree of polymerization (DP) from about 50 to about 100. In an even yet further aspect, the peptide has a degree of polymerization (DP) from about 100 to about 150. In a further aspect, the peptide has a degree of polymerization (DP) from about 150 to about 200. In a still further aspect, the peptide has a degree of polymerization (DP) from about 200 to about 250.
- the peptide has a degree of polymerization (DP) from about 250 to about 300. In an even further aspect, the peptide has a degree of polymerization (DP) from about 300 to about 350. In an even still further aspect, the peptide has a degree of polymerization (DP) from about 350 to about 400. In an even yet further aspect, the peptide has a degree of polymerization (DP) from about 400 to about 450. In a further aspect, the peptide has a degree of polymerization (DP) from about 100 to about 330.
- the peptide has a structure represented by a formula: , wherein n is an integer selected from 15 to about 300; wherein R 1 is independently a monosaccharide moiety or a disaccharide moiety; wherein each occurrence of R 2 is independently selected from hydrogen and methyl, of x to y is of from about 3:2 to about 4:1; and wherein the sum of x and y is at least 30, or a pharmaceutically acceptable salt thereof.
- x is 18 or greater and y is 6 or greater.
- x is 30 or greater and y is 10 or greater.
- x is 60 or greater and y is 20 or greater.
- x is 90 or greater and y is 30 or greater. In an even further aspect, x is 120 or greater and y is 40 or greater. In an even still further aspect, x is 150 or greater and y is 50 or greater. In an even yet further aspect, x is 180 or greater and y is 60 or greater. In a further aspect, x is 210 or greater and y is 70 or greater. In a still further aspect, x is 240 or greater and y is 80 or greater. In a yet further aspect, x is 270 or greater and y is 90 or greater. In an even further aspect, x is 300 or greater and y is 100 or greater. In an even still further aspect, x is 330 or greater and y is 110 or greater.
- x is 360 or greater and y is 120 or greater.
- x is from 18 to 360 and y is from 6 to 120.
- x is from 30 to 360 and y is from 10 to 120.
- x is from 60 to 360 and y is from 20 to 120.
- x is from 90 to 360 and y is from 30 to 120.
- x is from 120 to 360 and y is from 40 to 120.
- x is from 150 to 360 and y is from 50 to 120.
- x is from 180 to 360 and y is from 60 to 120.
- x is from 210 to 360 and y is from 70 to 120. In a still further aspect, x is from 240 to 360 and y is from 80 to 120. In a yet further aspect, x is from 270 to 360 and y is from 90 to 120. In an even further aspect, x is from 330 to 360 and y is from 110 to 120. In an even still further aspect, x is from 18 to 330 and y is from 6 to 110. In an even yet further aspect, x is from 18 to 300 and y is from 6 to 100. In a further aspect, x is from 18 to 270 and y is from 6 to 90. In a still further aspect, x is from 18 to 240 and y is from 6 to 80.
- x is from 18 to 210 and y is from 6 to 70. In an even further aspect, x is from 18 to 180 and y is from 6 to 60. In an even still further aspect, x is from 18 to 150 and y is from 6 to 50. In an even yet further aspect, x is from 18 to 120 and y is from 6 to 40. In a further aspect, x is from 18 to 90 and y is from 6 to 30. In a still further aspect, x is from 18 to 60 and y is from 6 to 20. In a yet further aspect, x is from 18 to 30 and y is from 6 to 10. In an even further aspect, x is from 18 to 180 and y is from 6 to 60.
- x is from 18 to 150 and y is from 6 to 50. In an even yet further aspect, x is from 18 to 120 and y is from 6 to 40. In a further aspect, x is from 60 to 180 and y is from 20 to 120. [00186] In various aspects, the ratio of x to y is about 3:2 to about 4:1. In a further aspect, the ratio of x to y is about 19:11 to about 4:1. In a still further aspect, the ratio of x to y is about 2:1 to about 4:1. In a yet further aspect, the ratio of x to y is about 21:9 to about 4:1. In an even further aspect, the ratio of x to y is about 11:4 to about 4:1.
- the ratio of x to y is about 23:7 to about 4:1. In an even yet further aspect, the ratio of x to y is about 23:7 to about 4:1. In a further aspect, the ratio of x to y is about 3:2 to about 23:7. In a still further aspect, the ratio of x to y is about 3:2 to about 11:4. In a yet further aspect, the ratio of x to y is about 3:2 to about 21:9. In an even further aspect, the ratio of x to y is about 3:2 to about 2:1. In an even still further aspectthe ratio of x to y is about 3:2 to about 19:11.
- the ratio of x to y is about 19:11 to about 23:7. In a further aspect, the ratio of x to y is about 2:1 to about 11:4. In a still further aspect, the ratio of x to y is about 21:9 to about 11:4. [00187] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00188] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00189] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00190] In various aspects, the peptide has a structure represented by a formula:
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula:
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula:
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula:
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , wherein R 20 is selected from ⁇ OR 31 , ⁇ NHR 32 , ⁇ N3, a protein tag, a sortase recognition sequence, a sugar residue, and a structure: ; wherein R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, C1-C8 alkyl, C2-C8 alkyne, C1-C8 azide, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH 2 CH 2 O) m CH 3 , and wherein m is an integer selected from 1 to 100.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00204] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00205] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00206] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00207] In various aspects, the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof. [00208] In various aspects, the peptide has a structure represented by a formula:
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula: , or a pharmaceutically acceptable salt thereof.
- the peptide has a structure represented by a formula:
- n is an integer selected from 15 to 300. In a further aspect, n is an integer selected from 15 to 250. In a still further aspect, n is an integer selected from 15 to 200. In a yet further aspect, n is an integer selected from 15 to 150. In an even further aspect, n is an integer selected from 15 to 100. In an even still further aspect, n is an integer selected from 15 to 50. In an even yet further aspect, n is an integer selected from 50 to 300. In a further aspect, n is an integer selected from 100 to 300. In a still further aspect, n is an integer selected from 150 to 300. In a yet further aspect, n is an integer selected from 200 to 300.
- n is an integer selected from 250 to 300. In an even still further aspect, n is an integer selected from 50 to 100. In an even yet further aspect, n is an integer selected from 100 to 150. In a further aspect, n is an integer selected from 150 to 200. In a still further aspect, n is an integer selected from 200 to 250. In a yet further aspect, n is an integer selected from 250 to 300. [00213] In one aspect, m is an integer selected from 1 to 100. In a further aspect, m is an integer selected from 2 to 100. In a still further aspect, m is an integer selected from 5 to 100. In a yet further aspect, m is an integer selected from 10 to 100.
- m is an integer selected from 20 to 100. In an even still further aspect, m is an integer selected from 30 to 100. In an even yet further aspect, m is an integer selected from 40 to 100. In a further aspect, m is an integer selected from 50 to 100. In a still further aspect, m is an integer selected from 60 to 100. In a yet further aspect, m is an integer selected from 70 to 100. In an even further aspect, m is an integer selected from 80 to 100. In an even still further aspect, m is an integer selected from 90 to 100. In an even yet further aspect, m is an integer selected from 1 to 90. In a further aspect, m is an integer selected from 1 to 80.
- m is an integer selected from 1 to 70. In a yet further aspect, m is an integer selected from 1 to 60. In an even further aspect, m is an integer selected from 1 to 50. In an even still further aspect, m is an integer selected from 1 to 40. In an even yet further aspect, m is an integer selected from 1 to 30. In a further aspect, m is an integer selected from 1 to 20. In a still further aspect, m is an integer selected from 1 to 10. In a yet further aspect, m is an integer selected from 1 to 5. In an even further aspect, m is an integer selected from 5 to 20. In an even still further aspect, m is an integer selected from 20 to 30.
- m is an integer selected from 30 to 40. In a further aspect, m is an integer selected from 40 to 50. In a still further aspect, m is an integer selected from 50 to 60. In a yet further aspect, m is an integer selected from 60 to 70. In an even further aspect, m is an integer selected from 70 to 80. In an even still further aspect, m is an integer selected from 80 to 90. [00214] In various aspects, m is an integer selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, and 10. In a further aspect, m is an integer selected from 1, 2, 3, 4, 5, 6, 7, 8, and 9. In a still further aspect, m is an integer selected from 1, 2, 3, 4, 5, 6, 7, and 8.
- m is an integer selected from 1, 2, 3, 4, 5, 6, and 7. In an even further aspect, m is an integer selected from 1, 2, 3, 4, 5, and 6. In an even still further aspect, m is an integer selected from 1, 2, 3, 4, and 5. In an even yet further aspect, m is an integer selected from 1, 2, 3, and 4. In a further aspect, m is an integer selected from 1, 2, and 3. In a still further aspect, m is an integer selected from 1 and 2. a.
- each occurrence of R 1 is independently selected from a glucose moiety, an N-acetylglmannosamine moiety, a mannose moiety, an N-acetylglmannosamine moiety, a fucose moiety, a sialic acid moiety, a fructose moiety, a lactose moiety, a sucrose moiety, a glucuronic acid moiety, a manuronic acid moiety, a gulose moiety, a guloronic acid moiety, a xylose moiety, a ribose moiety, an allose moiety, an altrose moiety, an idose moiety, and a talose moiety.
- each occurrence of R 1 is independently a monosaccharide moiety or a disaccharide moiety having a structure represented by a formula:
- R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00218] In a still further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00219] In a yet further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from:
- R 1 is a glycosyl moiety having a structure represented by a formula selected from: .
- R 1 is a glycosyl moiety having a structure represented by a formula selected from:
- R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00223] In a further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00224] In a still further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: . [00225] In a yet further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: , [00226] In an even further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from:
- R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00228] In an even yet further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00229] In a further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: . [00230] In a still further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: .
- R 1 is a glycosyl moiety having a structure represented by a formula selected from: [00232] In an even further aspect, R 1 is a glycosyl moiety having a structure represented by a formula selected from: . [00233] In various aspects, R 1 is a glycosyl moiety having a structure represented by a formula selected from: b.
- R 10 AND R 11 GROUPS [00234] In one aspect, each occurrence of R 10 and R 11 is independently selected from ⁇ OH and ⁇ NHAc. In a further aspect, each occurrence of R 10 and R 11 is ⁇ OH. In a still further aspect, each occurrence of R 10 and R 11 is ⁇ NHAc.
- each occurrence of R 10 is selected from ⁇ OH and ⁇ NHAc. In a further aspect, each occurrence of R 10 is ⁇ OH. In a still further aspect, each occurrence of R 10 is ⁇ NHAc. [00236] In various aspects, each occurrence of R 11 is selected from ⁇ OH and ⁇ NHAc. In a further aspect, each occurrence of R 11 is ⁇ OH. In a still further aspect, each occurrence of R 11 is ⁇ NHAc. c.
- R 20 is selected from ⁇ OR 31 , ⁇ NHR 32 , ⁇ N3, a protein tag, a sortase recognition sequence, a sugar residue, and a structure: .
- R 20 is selected from ⁇ OR 31 , ⁇ NHR 32 , ⁇ N 3 , and a structure: .
- R 20 is selected from ⁇ OR 31 and ⁇ NHR 32 .
- R 20 is ⁇ OR 31 .
- R 20 is ⁇ NHR 32 .
- R 20 is ⁇ N3.
- R 20 is the protein tag.
- protein tag refers to a peptide sequence located at the N-terminus of the peptide (e.g., a peptide as disclosed herein) for a specific purpose.
- a fluorescence tag can be used to give visueal readout on the peptide.
- Exemplary fluorescence tags include, but are not limited to, green fluorescent protein (GFP) and red fluorescent protein.
- GFP green fluorescent protein
- a protein tag can be used to allow for specific enzymatic modification (such as biotinylation by a biotin ligase) or chemical modification (such as coupling to other protein).
- the protein tag is selected from a polyglutamate tag, a polyarginine tag, a calmodulin-tag, CBP, FLAG, GST, HA, HBH, MBP, Myc, poly His, S-tag, SUMO, TAP, TRX, and V5.
- R 20 is the sortase recognition sequence.
- sortase recognition sequence refers to a sequence located at the N-terminus of the peptide (e.g., a peptide as disclosed herein) that is recognized by a sortase (a bacterial transpeptidase) and is subsequently cleaved.
- a sortase recognition sequence can be used, for example, to allow for sortase-mediated ligation to generate site-specifically modified proteins utilizing sortase transpeptides.
- the sortase recognition sequence is selected from LPXTG (SEQ ID NO: 1), LPXTGG (SEQ ID NO: 2), LPXTGGG (SEQ ID NO: 3), and LPXTGGGG (SEQ ID NO: 4), wherein X is a natural or unnatural amino acid.
- Examples of natural amino acids include, but are not limited to, serine, threonine, asparagine, glutamine, cysteine, selenocysteine, glycine, proline, alanine, valine, isoleucine, leucine, methionine, phenylalanine, tyrosine, and tryptophan.
- Examples of unnatural amino acids include, but are not limited to, hydroxyproline, beta-alanine, citrulline, ornithine, norleucine, 3-nitrotyrosine, nitroarginine, and pyroglutamic acid.
- the sortase recognition sequence is selected from LPETG (SEQ ID NO: 5), LPETGG (SEQ ID NO: 6), LPETGGG (SEQ ID NO: 7), and LPETGGGG (SEQ ID NO: 8).
- R 20 is the sugar residue.
- sucgar residue refers to the portion of a monosaccharide or a polysaccharide that remains after the monosaccharide or the polysaccharide is covalently attached to, for example, the N-terminus of the peptide (e.g., a peptide as disclosed herein).
- the sugar residue can refer to the sugar minus an atom such as, for example, a proton.
- the sugar residue is a residue of a sugar selected from fructose, glucose, and lactose.
- the sugar residue is a residue of a sugar selected from fructose and glucose.
- the sugar residue is a residue of a sugar selected from fructose and lactose.
- the sugar residue is a residue of a sugar selected from glucose and lactose.
- the sugar residue is a fructose residue.
- the sugar residue is a glucose residue.
- the sugar residue is a lactose residue.
- R 20 is a structure: . d. R 31 AND R 32 GROUPS [00245]
- R 31 and R 32 are selected from hydrogen, ⁇ CH2Ph, C1-C8 alkyl, C2-C8 alkyne, C1-C8 azide, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH2CH2O)mCH3.
- R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, C1-C4 alkyl, C2-C4 alkyne, C1-C4 azide, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH2CH2O)mCH3.
- R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, methyl, ethyl, propyl, isopropyl, ⁇ CH ⁇ CH, ⁇ CH2CH ⁇ CH, ⁇ CH2N3, ⁇ CH2CH2N3, ⁇ CH2CH2CH2N3, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH2CH2O)mCH3.
- R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, methyl, ethyl, ⁇ CH ⁇ CH, ⁇ CH2N3, ⁇ CH2CH2N3, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH 2 CH 2 O) m CH 3 .
- R 31 and R 32 is selected from hydrogen, ⁇ CH 2 Ph, methyl, ⁇ CH 2 N 3 , tetrazinyl, cyclooctynyl, norbornenyl, and –(CH2CH2O)mCH3.
- R 31 and R 32 is selected from hydrogen, ⁇ CH 2 Ph, C1-C8 alkyl, and C2-C8 alkyne. In a further aspect, R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, C1-C4 alkyl, and C2-C4 alkyne. In a still further aspect, R 31 and R 32 is selected from hydrogen, ⁇ CH2Ph, methyl, ethyl, propyl, isopropyl, ⁇ CH ⁇ CH, and ⁇ CH2CH ⁇ CH. In a yet further aspect, R 31 and R 32 is selected from hydrogen, ⁇ CH 2 Ph, and methyl. In an even further aspect, R 31 and R 32 is selected from hydrogen and methyl.
- R 31 and R 32 is selected from hydrogen and C1-C8 azide. In a further aspect, R 31 and R 32 is selected from hydrogen and C1-C4 azide. In a still further aspect, R 31 and R 32 is selected from hydrogen, ⁇ CH 2 N 3 , ⁇ CH 2 CH 2 N 3 , ⁇ CH 2 CH 2 CH 2 N 3 . In a yet further aspect, R 31 and R 32 is selected from hydrogen, ⁇ CH2N3, ⁇ CH2CH2N3. In an even further aspect, R 31 and R 32 is selected from hydrogen and ⁇ CH 2 N 3 .
- R 31 and R 32 is selected from hydrogen, tetrazinyl, cyclooctynyl, and norbornenyl. In a further aspect, R 31 and R 32 is selected from hydrogen and tetrazinyl. In a still further aspect, R 31 and R 32 is selected from hydrogen and cyclooctynyl. In a yet further aspect, R 31 and R 32 is selected from hydrogen and norbornenyl. [00249] In various aspects, R 31 and R 32 is selected from hydrogen and –(CH2CH2O)mCH3. [00250] In various aspect, v is selected from hydrogen and C1-C8 alkyl.
- R 31 and R 32 is selected from hydrogen and C1-C4 alkyl. In a still further aspect, R 31 and R 32 is selected from hydrogen, methyl, ethyl, propyl and isopropyl. In a yet further aspect, R 31 and R 32 is selected from hydrogen, methyl, and ethyl. In an even further aspect, R 31 and R 32 is selected from hydrogen and methyl. [00251] In various aspects, R 31 and R 32 is hydrogen. 2. E XAMPLE P EPTIDES [00252] In one aspect, a peptide can be present as one or more of the following structures:
- a peptide can be present as one or more of the following structures:
- peptides can optionally be omitted from the disclosed invention.
- the disclosed peptides can be used in connection with the disclosed methods, compositions, food products, solid or semi-solid supports, kits, and uses.
- pharmaceutically acceptable derivatives of the disclosed peptides can be used also in connection with the disclosed methods, compositions, food products, solid or semi-solid supports, kits, and uses.
- the pharmaceutically acceptable derivatives of the peptides can include any suitable derivative, such as pharmaceutically acceptable salts as discussed below, isomers, radiolabeled analogs, tautomers, and the like. C.
- the peptides of the invention can be prepared by employing reactions as shown in the following schemes, in addition to other standard manipulations that are known in the literature, exemplified in the experimental sections or clear to one skilled in the art. For clarity, examples having a single substituent are shown where multiple substituents are allowed under the definitions disclosed herein. [00258] Reactions used to generate the peptides of the invention are prepared by employing reactions as shown in the following Reaction Schemes, as described and exemplified below. In certain specific examples, the disclosed peptides can be prepared by Routes I-II, as described and exemplified below.
- Peptides are represented in generic form, wherein PG 1 is a carboxylic acid protecting group such as, for example, benzyl, PG 2 is an amine protecting group such as, for example, benzyl or carbobenzyloxy, and R’ is an alkyl group such as, for example, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, or tert-butyl, and with other substituents as noted in compound and peptide descriptions elsewhere herein.
- R is an alkyl group such as, for example, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, or tert-butyl, and with other substituents as noted in compound and peptide descriptions elsewhere herein.
- compounds of type 1.14 can be prepared according to reaction Scheme 1B above.
- compounds of type 1.10 can be prepared by glycosyl coupling of an appropriate hydroxyl protected substituted aminoacid, e.g., 1.8 as shown above, using an appropriate protected glycosyl residue, e.g., 1.9 as shown above.
- Appropriate protected hydroxyl substituted amino acids and appropriate protected glycosyl residues are commercially available or prepared by methods known to one skilled in the art.
- the coupling is carried out in the presence of an appropriate Lewis acid, e.g., boron trifluoride diethyl etherate, in an appropriate solvent, e.g., dichloromethane, at an appropriate temperature, e.g., 0 °C to room temperature, for an appropriate amount of time, e.g., overnight.
- Compounds of type 1.11 can be prepared by deprotection of an appropriate protected amino acid, e.g., 1.10 as shown above.
- the deprotection reaction is carried out in the presence of an appropriate deprotecting reagent, e.g., hydrogen gas, in the presence of an appropriate catalyst, e.g., 10 % palladium on carbon, in an appropriate solvent, e.g., methanol.
- Compounds of type 1.13 can be prepared by reaction of an appropriate dialkyl dicarbonate, e.g., 1.12 as shown above, with an appropriate amino acid, e.g., 1.11 as shown above.
- Appropirate dialkyl dicarbonates are commercially available or prepared by methods known to one skilled in the art. The reaction is carried out in the presence of an appropriate base, e.g., sodium bicarbonate, in an appropriate solvent system, e.g., tetrahydrofuan and water, at an appropriate temperature, e.g., 0 °C.
- Compounds of type 1.14 can be prepared by cyclization of an appropriate carbamate protected amino acid, e.g., 1.13 as shown above.
- the reaction is carried out in the presence of an appropriate carboxyl activating agent, e.g., triphosgene, and an appropriate base, e.g., triethylamine, in the presence of an appropriate chloride scavenger, e.g., epichlorohydrin, in an appropriate solvent, e.g., tetrahydrofuan, at an appropriate temperature, e.g., room temperature.
- an appropriate carboxyl activating agent e.g., triphosgene
- an appropriate base e.g., triethylamine
- an appropriate chloride scavenger e.g., epichlorohydrin
- an appropriate solvent e.g., tetrahydrofuan
- the above reaction provides an example of a generalized approach wherein compounds similar in structure to the specific reactants above (compounds similar to compounds of type 1.1, 1.2, 1.3, 1.4, 1.5, and 1.6), can be substituted in the reaction to provide glycosylated threonine analogs similar to Formula 1.7.
- ROUTE II [00262]
- peptide analogs can be prepared as shown below. S CHEME 2A.
- Peptides are represented in generic form, with substituents as noted in compound and peptide descriptions elsewhere herein. A more specific non-limiting example of the synthesis shown in Scheme 2A is set forth below.
- compounds of type 2.7 can be prepared according to reaction Scheme 2B above.
- compounds of type 2.7 can be prepared by NCA copolymerization of an appropriate glycosylated threonine or glycosylated serine analogs, e.g., 2.5 as shown above, and an alanine-N-carboxy anhydride, e.g., 2.4 as shown above.
- Alanine-N-carboxy anhydride is commercially available or prepared by methods known to one skilled in the art.
- Degrees of polymerization can be readily tuned by altering the monomer to initiator ratios, and amino acid compositions can be tuned via the amino acid N-carboxy anhydride feed ratios, as further detailed herein.
- the polymerization is carried out in the presence of an catalyst, e.g., tetrakis(trimethylphosphine)cobalt, in an appropriate solvent, e.g., tetrahydrofuran, at an appropriate temperature, e.g., 0 °C.
- an appropriate base e.g., potassium carbonate
- an appropriate solvent system e.g., methanol and water.
- the above reaction provides an example of a generalized approach wherein compounds similar in structure to the specific reactants above (compounds similar to compounds of type 2.1, 2.2, and 2.3), can be substituted in the reaction to provide peptide analogs similar to Formula 2.4.
- the disclosed peptides are useful in a wide range of applications, including, but not limited to biomedical cryopreservation, agriculture, and cosmetics.
- the disclosed peptides can be formulated into a composition (e.g., a cryoprotectant composition, an agricultural composition, a cosmetic composition) to facilitate use in these areas.
- the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about 0 °C to about -20 °C (e.g., at about 0, -1, -2, -3, -4, - 5, -6, -7, -8, -9, -10, -11, -12, -13, -14, -15, -16, -17, -18, -19, or -20 °C).
- the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about -20 °C to about -40 °C (e.g., at about -20, -21, -22, -23, -24, -25, -26, -27, -28, -29, -30, -31, -32, -33, -34, -35, -36, -37, -38, -39, or -40 °C).
- the disclosed composition reduces or inhibits ice crystal formation at about -20 °C.
- the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about -40 °C to about -200 °C (e.g., at about -40, -45, -50, -55, -60, -65, -70, -75, -80, -85, - 90, -95, -100, -105, -110, -115, -120, -125, -130, -135, -140, -145, -150, -155, -160, -165, - 170, -175, -180, -185, -190, -195, or -200 °C).
- the disclosed composition reduces or inhibits ice crystal formation at about -196 °C.
- the disclosed composition reduces or inhibits ice crystal formation at a temperature from about 0 °C to about -200 °C, from about -10 °C to about - 190 °C, from about -20 °C to about -180 °C, from about -30 °C to about -170 °C, from about -40 °C to about -160 °C, from about -50 °C to about -150 °C, from about -60 °C to about - 140 °C, from about -70 °C to about -140 °C, from about -80 °C to about -130 °C, from about -90 °C to about -120 °C, or from about -100 °C to about -110 °C.
- the disclosed composition comprises the peptide in a concentration of from about 100 nM to about 1,000 mM. In a further aspect, the disclosed composition comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM, from about
- the disclosed composition comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM. In yet a further aspect, the disclosed composition comprises the peptide in a concentration of about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 mM. [00269] It is understood that the disclosed compositions can be prepared from the disclosed peptide. It is also understood that the disclosed compositions can be employed in the disclosed methods of using. 1.
- cryoprotectant compositions comprising an effective amount of a disclosed peptide and one or more selected from: (a) a non-antifreeze protein; (b) a microbe; (c) a cell component; and (d) a cell.
- the peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues, and one or more selected from: (a) a non-antifreeze protein; (b) a microbe; (c) a cell component; and (d) a cell.
- cryoprotectant refers to the ability of a composition (e.g., a cryoprotectant composition as disclosed herein) to protect a sample such as, for example, a biological sample (e.g., a non-antifreeze protein, a microbe, a cell component, or a cell) from freezing and/or from damage that occurs during freezing (e.g., due to ice formation).
- a biological sample e.g., a non-antifreeze protein, a microbe, a cell component, or a cell
- Cryopreservation is a process whereby a sample (e.g., a biological sample) is preserved by cooling to sub-zero temperatures. At these low temperatures, any biological activity, including the biochemical reactions is slowed or stopped.
- the preserved sample should retain the integrity and viability to a reasonable level at the time of harvest.
- the process of preserving cells or tissue should preferably not, in itself, severely damage or destroy for example the cells or tissue architecture. However, it is known that upon freezing cells or tissue that ice crystals may form.
- the cells or tissue are placed in a storage solution, and then preserved by freezing.
- cryoprotectant compositions are typically used to prevent damage due to freezing during the cooling or thawing process.
- the disclosed cryoprotectant composition can be applied directly to the sample as a pre-treatment (e.g., before storing), applied at an additional timepoint during freezing, and/or prior to thawing.
- cryoprotectant composition can be applied to the sample before freezing. In various further aspects, the cryoprotectant composition can be applied to the sample during freezing. In various further aspects, the cryoprotectant composition can be applied to the sample after freezing but prior to thawing. In various further aspects, the cryoprotectant composition can be applied to the sample at multiple timepoints (e.g., before, during, and/or after freezing). [00275]
- the disclosed cryoprotectant composition can be formulated as a non-freezing liquid (e.g., an aqueous solution or a non-aqueous solution), a non-freezing gel, a non-freezing hydrogel, or a non-freezing paste.
- the cryoprotectant composition can be hygroscopic, thermally conductive, and/or biocompatible.
- the cryoprotectant composition can be formulated to be acoustically transparent such as, for example, to allow ultrasound to pass through the cryoprotectant compositions such as, for example, a water- based gel as described in US 4,002,221 and US 4,459,854.
- the cryoprotectant composition comprises a non-antifreeze protein.
- non-antifreeze protein refers to proteins that are not recognized to have properties of ice recrystallization inhibition or ice crystal shaping.
- the non-antifreeze protein is selected from an enzyme, a hormone, an antibody, a growth factor, a vaccination protein, a therapeutic protein, or a nutrient protein. Additional examples of a non-antifreeze protein include, but are not limited to, egg albumin, bovine serum albumin, human serum albumin, and gelatin.
- the cryoprotectant composition comprises a microbe.
- microbe means a microorganism that can exist in a single-celled form or as a colony of cells.
- cryoprotectant composition comprises a cell component.
- cell component refers to the biomolecules and structures of which cells are composed.
- cryoprotectant composition comprises a cell.
- the term “cell” means the smallest, most basic basic membrane-bound unit that contains the fundamental molecules of life.
- cells include, but are not limited to, stem cells, bone cells, blood cells, muscle cells, sperm cells, female egg cells, fat cells, and nerve cell. Additional examples of cells include, but are not limited to, liver tissue or hepatocytes, kidney, intestine, heart, pancreas, genitourinary cells (e.g., sperm cells, oocytes), corpus cavernosum cells (e.g., smooth muscle corpus cavernosum cells, epithelial corpus cavernosum cells), urinary bladder cells, urethral cells, ureter cells, kidney cells, testicular cells), bone marrow, primary cells, organoids, and other biological cells and tissues for cryopreservation.
- stem cells e.g., stem cells, bone cells, blood cells, muscle cells, sperm cells, female egg cells, fat cells, and nerve cell.
- Additional examples of cells include, but are not limited to, liver tissue or hepatocytes, kidney, intestine, heart, pancreas, genit
- the disclosed cyroprotectant composition can also contain various additives including, but not limited to, a freezing point depressant, a thickening agent, a pH buffer, a humectant, a surfactant, and/or other additives configured to provide the desired cryoprotectant properties to the composition.
- the cryoprotectant composition further comprises a freezing point depressant.
- freezing point depressants include, but are not limited to, propylene glycol (PG), polyethylene glycol (PEG), polypropylene glycol (PPG), ethylene glycol, dimethyl sulfoxide (DMSO), combinations thereof, and other glycols.
- the freezing point depressant can also include ethanol, propanol, iso-propanol, butanol, and/or other suitable alcohol compounds.
- Certain freezing point depressants e.g., PG, PPG, PEG, etc.
- the freezing point depressant can lower the freezing point of a sample (e.g., a biological sample) to from about 0 °C to about -40 °C.
- the freezing point of a solution can be lowered to from about -10 °C to about -20 °C, to from about -10 °C to about -18 °C, or to from about -10 °C to about -15 °C.
- the freezing point of a sample can be lowered to a temperature less than about 0 °C, less than about -5 °C, less than about -10 °C, less than about -12 °C, less than about -15 °C, less than about -16 °C, less than about -17 °C, less than about -18 °C, less than about -19 °C, or less than about -20 °C.
- the freezing point depressant can lower the freezing point of a sample (e.g., a biological sample) to a temperature of less than about - 20 °C to about -25 °C, less than about -20 °C to about -30 °C, less than about -25 °C to about -35 ° C, or less than about -30 °C to about -40 °C.
- a sample e.g., a biological sample
- the cryoprotectant composition further comprises a thickening agent.
- thickening agents include, but are not limited to, carboxyl polyethylene polymer, hydroxyethyl xylose polymer, carboxyl methylcellulose, hydroxyethyl cellulose (HEC), and/or other viscosity modifiers, and can be used to provide a viscosity in the range of about 1 cP to about 10,000 cP.
- the thickening agent can provide a viscosity in the range of about 4,000 cP to about 8,000 cP.
- the thickening agent can provide a viscosity in the range of about 5,000 cP to about 7,000 cP. Other viscosities can be achieved, if needed or desired.
- a cryoprotectant composition having a viscosity in one or more of these ranges can readily adhere to a treatment device, the surface of the sample, the skin of a subject, and/or the interface between the treatment device and the skin of the subject during treatment.
- the cryoprotectant composition further comprises a pH buffer.
- pH buffers include, but are not limited to, cholamine chloride, cetamide, glycine, tricine, glycinamide, bicine, and/or other suitable pH buffers.
- the pH buffer can help the cryoprotectant composition to have a consistent pH of from about 3.5 to about 11.5.
- the pH is of from about 5 to about 9.5.
- the pH is of from about 6 to about 7.5.
- the pH of the cryoprotectant composition is within ⁇ 2 or ⁇ 1 of the pH of the sample.
- the cryoprotectant composition further comprises a humectant.
- humectants include, but are not limited to, glycerin, alkylene glycol, polyalkylene glycol, propylene glycol, glyceryl triacetate, polyols (e.g., sorbitol and/or maltitol), polymeric polyols (e.g., polydextrose), quillaia, lactic acid, and/or urea.
- the humectant can promote the retention of water to prevent the cryoprotectant composition from drying out.
- the cryoprotectant composition further comprises a surfactant.
- surfactants include, but are not limited to, sodium dodecyl sulfate, ammonium lauryl sulfate, sodium lauryl sulfate, alkyl benzene sulfonate, sodium lauryl ether sulfate, and other suitable surfactants.
- the surfactant can promote easy spreading of the cryoprotectant composition when an operator applies the cryoprotectant to a sample (e.g., a biological sample).
- cryoprotectant may also include other additives in addition to or in lieu of the composition components described above.
- some of the embodiments of cryoprotectant compositions may also include a coloring agent, fragrance or perfume, emulsifier, stabilizer, an anesthetic agent, and/or other ingredient.
- a GRICULTURAL C OMPOSITIONS [00287] In one aspect, disclosed are agricultural compositions comprising a disclosed peptide.
- the peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- the agricultural composition is a cryoprotectant agricultural composition.
- the term “agricultural compositions” refers to compositions used treat agriculture products to increase food production and decrease the amount damage caused by environmental stress due to low temperatures near freezing.
- Non-limiting examples of agriculture products include grains, feeds, soybeans, tree nuts, fruits, and vegetables.
- Frost is a major environmental stress caused by low temperature combined with dewpoints below freezing points ( ⁇ 0°C), posing substantial economic threat on plants.
- ⁇ 0°C freezing points
- Freezing-induced cellular dehydration is the predominant cause of damage in which the cell membranes are disrupted when the dehydration exceeds cell dehydration-tolerance.
- agricultural compositions such as, for example, agricultural compositions having cryoprotective properties can beneficially reduce, minimize, and otherwise prevent damage to plants due to frost.
- many tropical and subtropical species of plants are in danger of extinction due to climate change and abiotic stress. Cryopreservation is a promising long- term technique to preserve the germplasms of these species.
- tropical species are temperature delicate.
- cryoprotectant agricultural compositions that can increase the explant’s tolerance to low temperatures and/or enable the plant cells to withstand freezing are desirable.
- the resistance of plants and plant tissue to frost and low temperatures, including subfreezing temperatures can be increased via application of an agricultural composition (e.g., a disclosed agricultural composition).
- an agricultural composition e.g., a disclosed agricultural composition
- the agricultural composition can be sprayed onto the plants to be treated using a plant spray apparatus suitable for spraying aqueous solutions.
- the plants to be treated are thoroughly sprayed so that all of the plant tissue surfaces are completely covered. Due to the size or shape of a plant, a single application may require two or more sprayings.
- the plant can be dipped directly into the composition.
- the agricultural composition further comprises a non-ionic surfactant, which can help to ensure that the entire surface of the plant is coated with the compositions.
- non-ionic surfactants examples include, but are not limited to polyoxyethylene sorbitan monolaurate (Tween 20) and polyoxyethylene sorbitan monooleate (Tween 80).
- the agricultural composition comprises from about 0.01 wt% to about 0.5 wt%, 0.05 wt% to about 0.5 wt%, 0.1 wt% to about 0.5 wt%, 0.01 wt% to about 0.1 wt%, 0.01 wt% to about 0.05 wt%, or 0.05 wt% to about 0.1 wt% of the non-ionic surfactant.
- Additional agents that can be used in the disclosed agricultural composition include, but are not limited to, organic/inorganic fertilizers, pesticides, plant hormones, growth regulators, other polymers, and various coating materials.
- the disclosed agricultural composition does not include a pesticide.
- the disclosed agricultural composition can be applied to the plants immediately prior to exposure to freezing conditions, it is also envisioned that the composition can be applied much earlier such as, for example, from about 4 hours to about 1 week prior to exposure to freezing conditions.
- the disclosed agricultural composition can be applied more than once before onset of the freezing temperatures, the first application being made from about several days to about one week prior to the onset of freezing temperatures and constituting a conditioning application.
- the disclosed agricultural composition can be applied regularly such as, for example, on a yearly basis, on a monthly basis, on a weekly basis, or even on a daily basis, in order to minimize any damage that might be caused by a sudden occurrence of freezing temperatures.
- the disclosed agricultural composition can be applied immediately before the exposure to freezing temperatures if the plant can to tolerate a high concentration of the agent. 3.
- COSMETIC COMPOSITIONS [00296] In one aspect, disclosed are cosmetic compositions comprising a disclosed peptide.
- the peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- the oil component and the fat component are physically pressed and the structure thereof is destroyed, causing the quality of the cosmetics to become deteriorated.
- the degradation of quality and the like can be avoided by incorporation of a disclosed peptide (i.e., to form a disclosed cosmetic composition) since crystallization of water can be prevented and the structure of oil component and fat component can be maintained.
- the disclosed cosmetic compositions can also be formulated to penetrate skin, thereby reducing the risk of ice nucleation and protecting the tissue's cells if ice formation does occur.
- Such applications can increase the resistance of human skin to frostbite, for example, at temperatures near or below 0 °C, and can minimize the resulting damage if cellular freezing does occur.
- Methods of applying a cosmetic composition are well-known in the art and include, for example, application by hand, by spraying, or in conjunction with an occlusive backing such as in an adhesive patch.
- the formulation should be sufficiently viscous to remain on the skin for an extended period of time, to allow for maximum protection to be achieved.
- the cosmetic composition is a skin care product.
- the cosmetic composition is a topical formulation. Examples of topical formulations include, but are not limited to, creams, serums, gels, solutions, aerosols, ointments, sprays, lotions, and patches.
- Topical cosmetic compositions can be co-formulated to include inhibitors of apoptosis or reperfusion injury, and additional cryoprotectants such as glycerol, dimethylsulfoxide (DMSO), and/or low molecular weight sugars.
- the formulation can also include a variety of optional additives including, but not limited to, wetting agents, fragrances, and/or preservatives.
- E. FOOD PRODUCTS [00302]
- food products comprising a disclosed peptide.
- the peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- Frozen compositions such as ice cream, typically incorporate a hardening step that involves quickly freezing the composition to obtain a desired frozen composition mouthfeel.
- Mouthfeel is affected by the size of ice crystals within the frozen composition. Larger ice crystals impart a grainy mouthfeel. Consequently, rapid freezing results in smaller ice crystals and smoother frozen composition mouthfeel. Without the hardening step, liquid water in frozen composition compositions freezes at much slower rates and forms large ice crystals which impart unacceptably grainy mouthfeel to the frozen composition. In addition, during frozen storage, ice crystal size increases over time as disproportionation occurs and smaller crystals melt and recrystallize onto larger ice crystals in a dynamic process resulting in pronounced iciness, giving the product an undesirable characteristic. Controlling the ice crystal size, whether by formulation, processing, distribution temperature control, or product age management is an objective of all frozen composition manufacturers in order to ensure a high quality finished product.
- Frozen fruits and vegatables produced according to traditional freezing methods suffer from a breakdown in the vegetable or fruit cell wall structure and, as such, have a low textural crispness.
- Crispness generally relates to the amount of water found in the cells of the vegetable or fruit, and translates into plant textural firmness upon mastication.
- Crispness is also a function of the structural integrity of the cells.
- a crisp vegetable is typically imbibed with water, has an intact cell wall structure, and, as such, has a firm, crisp texture.
- crisp vegetables and fruits have a crunchy and firm texture. For example, turgid or crisp celery will be crisp and crunchy; non-turgid or low crispness celery will be limp. When the cell walls break, water exits and crispness decreases.
- the disclosed peptides can be incorporated into a food product, in order slow, reduce, or otherwise inhibit ice crystal growth processes that influence the size and shape characteristics of the resultant ice that is formed during regrowth, thereby minimizing potential freezing damage by preventing or inhibiting ice recrystallisation of the product upon freezing.
- the disclosed food product reduces or inhibits ice crystal formation at a temperature of from about 0 °C to about -20 °C (e.g., at about 0, -1, -2, -3, -4, -5, -6, -7, -8, -9, -10, -11, -12, -13, -14, -15, -16, -17, -18, -19, or -20 °C).
- the disclosed food product reduces or inhibits ice crystal formation at a temperature of from about -20 °C to about -40 °C (e.g., at about -20, -21, -22, -23, -24, -25, -26, -27, -28, -29, -30, -31, -32, -33, -34, -35, -36, -37, -38, -39, or -40 °C).
- the disclosed food product reduces or inhibits ice crystal formation at about -20 °C.
- the disclosed food product reduces or inhibits ice crystal formation at a temperature of from about -40 °C to about -200 °C (e.g., at about -40, -45, -50, -55, -60, -65, -70, -75, -80, -85, -90, -95, -100, -105, -110, -115, -120, -125, -130, -135, -140, -145, -150, - 155, -160, -165, -170, -175, -180, -185, -190, -195, or -200 °C).
- the disclosed food product reduces or inhibits ice crystal formation at about -196 °C.
- the disclosed food product reduces or inhibits ice crystal formation at a temperature from about 0 °C to about -200 °C, from about -10 °C to about - 190 °C, from about -20 °C to about -180 °C, from about -30 °C to about -170 °C, from about -40 °C to about -160 °C, from about -50 °C to about -150 °C, from about -60 °C to about - 140 °C, from about -70 °C to about -140 °C, from about -80 °C to about -130 °C, from about -90 °C to about -120 °C, or from about -100 °C to about -110 °C.
- the disclosed food product comprises the peptide in a concentration of from about 100 nM to about 1,000 mM.
- the disclosed food product comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM,
- the disclosed food product comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM.
- the disclosed food product comprises the peptide in a concentration [00308]
- the food product is selected from ice cream, yogurt, seafood, fruit, and a meat product.
- the food product is ice cream.
- the food product is yogurt.
- the food product is ice cream.
- the food product is seafood.
- the food product is a fruit.
- the food product is a meat product.
- F. SURFACES [00309]
- the disclosed peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- solid or semi-solid supports comprising a surface attached (e.g., covalently attached or coated) to a residue of a disclosed peptide.
- the disclosed peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- the disclosed peptides can be attached to a surface in order to prevent, inhibit, or otherwise delay the formation of ice on objects including, but not limited to, aircrafts or parts thereof, gas pipelines, windows, electrical equipment, drones, cables (e.g., power lines), mechanical equipment (e.g., car engines, gear systems, brake systems, etc.), and the like.
- objects including, but not limited to, aircrafts or parts thereof, gas pipelines, windows, electrical equipment, drones, cables (e.g., power lines), mechanical equipment (e.g., car engines, gear systems, brake systems, etc.), and the like.
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at a temperature of from about 0 °C to about -20 °C (e.g., at about 0, -1, -2, -3, -4, -5, -6, -7, -8, -9, -10, -11, -12, -13, -14, -15, -16, -17, -18, -19, or -20 °C).
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at a temperature of from about -20 °C to about -40 °C (e.g., at about -20, - 21, -22, -23, -24, -25, -26, -27, -28, -29, -30, -31, -32, -33, -34, -35, -36, -37, -38, -39, or -40 °C).
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at about -20 °C.
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at a temperature of from about -40 °C to about -200 °C (e.g., at about -40, -45, -50, -55, -60, -65, -70, -75, -80, -85, -90, -95, -100, - 105, -110, -115, -120, -125, -130, -135, -140, -145, -150, -155, -160, -165, -170, -175, -180, - 185, -190, -195, or -200 °C).
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at about -196 °C.
- the disclosed surface reduces or inhibits ice crystal formation at a temperature from about 0 °C to about -200 °C, from about -10 °C to about -190 °C, from about -20 °C to about -180 °C, from about -30 °C to about -170 °C, from about -40 °C to about -160 °C, from about -50 °C to about -150 °C, from about -60 °C to about -140 °C, from about -70 °C to about -140 °C, from about -80 °C to about -130 °C, from about -90 °C to about -120 °C, or from about -100 °C to about -110 °C.
- the disclosed solid or semi-solid support reduces or inhibits ice crystal formation at a temperature from about 0 °C to about -200 °C, from about -10 °C to about -190 °C, from about -20 °C to about -180 °C, from about -30 °C to about -170 °C, from about -40 °C to about -160 °C, from about -50 °C to about -150 °C, from about -60 °C to about -140 °C, from about -70 °C to about -140 °C, from about -80 °C to about -130 °C, from about -90 °C to about -120 °C, or from about -100 °C to about -110 °C.
- a peptide can be formulated into a composition, and coated onto the surface. See, e.g., Stawikowski and Fields (2002) Curr Protoc Protein Sci. Chapter: Unit-18.1, doi: 10.1002/0471140864.ps1801s26.
- attached is via covalent attachment to the surface.
- attached is via coating a cyroprotectant composition comprising the peptide on the surface.
- the surface is a surface of a solid or semi-solid support, and wherein the support is a glass bead, a silica-based resin, a cellulosic resin, an agarose bead, a polystyrene bead, or a polyacrylamide resin.
- the disclosed surface comprises the peptide in a concentration of from about 100 nM to about 1,000 mM.
- the disclosed surface comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM, from about 100 mM to about 250 mM, from about 250 mM to about 500 mM, from about 500 mM to about 750 ⁇ M, from about
- the disclosed surface comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM. In yet a further aspect, the disclosed surface comprises the peptide in a concentration. [00319] In various aspects, the cryoprotectant composition comprises the peptide in a concentration of from about 100 nM to about 1,000 mM.
- the cryoprotectant composition comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM, from about 100 mM to about 250 mM, from about 250 mM to about 500 mM, from about 500 mM to about 750 ⁇ M
- the cryoprotectant composition comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM. In yet a further aspect, the cryoprotectant composition comprises the peptide in a concentration.
- the disclosed solid or semi-solid support comprises the peptide in a concentration of from about 100 nM to about 1,000 mM.
- the disclosed solid or semi-solid support comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM, from about 100 mM to about 250 mM, from about 250 mM to about 500 mM, from about 500 mM to about 750
- the disclosed solid or semi-solid support comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM.
- the disclosed solid or semi-solid support comprises the peptide in a concentration.
- the residue of the peptide comprises an N-terminus, and the N- terminus is covalently attached to the surface.
- the residue of the peptide has a structure represented by a formula: , wherein each occurrence of R 1 is independently a monosaccharide moiety or a disaccharide moiety; wherein each of R 10 and R 11 is independently selected from ⁇ OH and ⁇ NHAc; wherein each occurrence of R 2 is independently selected from hydrogen and methyl; wherein R 20 is selected from ⁇ OR 31 , ⁇ NHR 32 , ⁇ N3, a protein tag, a sortase recognition sequence, a sugar residue, and a structure: wherein R 31 and R 32 are selected from hydrogen, ⁇ CH2Ph, C1-C8 alkyl, C2-C8 alkyne, C1-C8 azide, tetrazinyl, cyclooctynyl, norbornenyl, and –(CH 2 CH 2 O) m CH 3 ; wherein m is an integer selected from 1 to 100; wherein the ratio of x to y is
- each occurrence of R 10 and R 11 is independently selected from ⁇ OH and ⁇ NHAc.
- the term “support” refers to a material or substrate (e.g., a surface) onto which a peptide or a residue of a peptide, as defined herein, adheres. Adherence can be, for example, via chemical bonding, immobilization, dispersion, or association. Typically, a support is a polymeric material such as a network polymeric material. Supports include glasses, semiconductor materials, ceramic materials, metal surfaces, and other substrates on which the peptide or the residue of the peptide, as defined herein, can adhere.
- supports include, but are not limited to, glass beads, silica-based resins, cellulosic resins, agarose beads, polystyrene beads, or polyacrylamide resins.
- the support can be solid or semi-solid (e.g., gel-like, such as a polymer support composed of hydrogel polymers) as further described herein.
- G. M ETHODS OF I NHIBITING I CE C RYSTAL F ORMATION IN A S AMPLE [00325]
- methods of inhibiting ice crystal formation in a sample comprising contacting the sample with an effective amount of a disclosed peptide.
- the disclosed peptide comprises a plurality of alanine residues and a plurality of glycosylated residues selected from glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues.
- the disclosed peptides, compositions, products, supports, and methods are useful for cryopreservation during supercooling to high sub-zero temperatures (e.g., from about 0 °C to about -20 °C).
- the disclosed peptides, compositions, products, supports, and methods are useful for cryopreservation during freezing protocols (e.g., from about -20 °C to about -196 °C). Freezing protocols are typically performed at a controlled rate (sometimes referred to as slow freezing) during at least part of the temperature reduction.
- a biological sample or macromolecule can be contacted with a disclosed peptide, and the temperature can be reduced at a controlled rate (e.g., lowered at a rate of 1 °C. per minute) until the desired temperature is reached.
- the temperature can be reduced at a controlled rate until a desired temperature is reached (e.g., from about -80° C to about -180° C), and then the sample or macromolecule can be flash frozen (e.g., by immersing the sample or macromolecule in liquid nitrogen or placing the sample or macromolecule above liquid nitrogen).
- the disclosed peptide should preferably be contacted with the sample or macromolecule being cryopreserved prior to freezing, to ensure that the peptide is in contact with the sample.
- the disclosed peptides, compositions, products, supports, and methods are useful for cryogenic freezing protocols (e.g., from about -90 °C to about - 196 °C).
- a biological sample or macromolecule can be contacted with a disclosed peptide or composition, then plunged into liquid nitrogen or a stream of liquid nitrogen vapor in order to quickly freeze the sample without the formation of ice crystals. No ice lattice exists and so the water within the sample or macromolecule is in an amorphous or glass-like state.
- the concentrations and compositions of a peptide disclosed herein can be modified depending on the particular biological sample and/or macromolecule being cryopreserved and the particular cryopreservation protocol being employed.
- the disclosed composition comprises the peptide in a concentration of from about 100 nM to about 1,000 mM.
- the disclosed composition comprises the peptide in a concentration of from about 100 nM to about 250 nM, from about 250 nM to about 500 nM, from about 500 nM to about 750 nM, from about 750 nM to about 1 ⁇ M, from about 1 ⁇ M to about 5 ⁇ M, from about 5 ⁇ M to about 25 ⁇ M, from about 25 ⁇ M to about 50 ⁇ M, from about 50 ⁇ M to about 100 ⁇ M, from about 100 ⁇ M to about 250 ⁇ M, from about 250 ⁇ M to about 500 ⁇ M, from about 500 ⁇ M to about 750 ⁇ M, from about 750 ⁇ M to about 1 mM, from about 1 mM to about 10 mM, from about 10 mM to about 50 mM, from about 50 mM to about 100 mM, from about 100 mM to about 250 mM, from about 250 mM to about 500 mM, from about 500 mM to about 750 ⁇ M, from about
- the disclosed composition comprises the peptide in a concentration of about 100 nM, about 1 ⁇ M, about 10 ⁇ M, about 100 ⁇ M, about 1 mM, about 10 mM, about 100 mM, or about 1,000 mM. In yet a further aspect, the disclosed composition comprises the peptide in a concentration of about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 mM.
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about 0 °C to about -20 °C (e.g., at about 0, -1, -2, -3, -4, -5, -6, -7, -8, -9, -10, -11, -12, -13, -14, -15, -16, -17, -18, -19, or -20 °C).
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about -20 °C to about -40 °C (e.g., at about -20, -21, -22, -23, -24, -25, -26, -27, -28, -29, -30, -31, -32, -33, -34, -35, -36, -37, -38, -39, or -40 °C).
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at about -20 °C.
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at a temperature of from about -40 °C to about -200 °C (e.g., at about -40, -45, -50, -55, -60, -65, -70, -75, -80, -85, -90, -95, -100, -105, -110, -115, -120, -125, -130, -135, -140, -145, -150, -155, -160, -165, -170, -175, -180, -185, -190, -195, or -200 °C).
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at about -196 °C.
- the disclosed peptide and/or the disclosed composition reduces or inhibits ice crystal formation at a temperature from about 0 °C to about -200 °C, from about - 10 °C to about -190 °C, from about -20 °C to about -180 °C, from about -30 °C to about -170 °C, from about -40 °C to about -160 °C, from about -50 °C to about -150 °C, from about -60 °C to about -140 °C, from about -70 °C to about -140 °C, from about -80 °C to about -130 °C, from about -90 °C to about -120 °C, or from about -100 °C to about -110 °C.
- contacting is via application (e.g., application onto a sample or surface, topical application). In various further aspects, contacting is via coating. In various further aspects, contacting is via spraying or dipping. [00332] In various aspects, contacting is via covalent attachment. For example, as detailed herein, in various aspects, the disclosed peptide can be covalently attached to a surface. [00333] In various aspects, contacting is for a time period of at least 1 hour, at least 2 hours, at least 5 hours, at least 10 hours, at least 20 hours, at least 24 hours, or for longer than 24 hours.
- contacting is for a time period of at least 1 day, 2 days, 4 days, 6 days, 7 days, or longer than 7 days.
- the method involves repeated contacting steps.
- the sample can be contacted with the peptide or composition at least once, at least twice, at least three time, at least four times, or more than four times.
- the sample is a biological material.
- biological materials include, but are not limited to, a non-antifreeze protein (i.e., an enzyme, a hormone, an antibody, a growth factor, a vaccination protein, a therapeutic protein, or a nutrient protein), a microbe (i.e., a virus, a bacteria, an archaea, a fungi, and a protists), a cell component (i.e.
- a non-antifreeze protein i.e., an enzyme, a hormone, an antibody, a growth factor, a vaccination protein, a therapeutic protein, or a nutrient protein
- a microbe i.e., a virus, a bacteria, an archaea, a fungi, and a protists
- a cell component i.e.
- the sample is a food product.
- the sample is an agricultural product.
- examples of agriculture products for which the disclosed method can be useful include, but are not limited to, grains, feeds, soybeans, tree nuts, fruits, and vegetables.
- the sample is a cosmetic.
- cosmetics for which the disclosed method can be useful include, but are not limited to, lips balms, hair products, makeup, nail products, soaps and lotions.
- the method further comprises storing the biological material for a period of time. [00340] In various aspects, storing is at a temperature of about 25 °C or less.
- storing is at a temperature of abour 20 °C. In a still further aspect, storing is at a temperature of about 15 °C. In a yet further aspect, storing is at a temperature of about 10 °C. In an even further aspect, storing is at a temperature of abour 5 °C. In an even still further aspect, storing is at a temperature of abour 0 °C. In an even further aspect, storing is at a temperature of abour -5 °C. In an even yet further aspect, storing is at a temperature of abour -10 °C. In a further aspect, storing is at a temperature of abour -15 °C.
- storing is at a temperature of about -20 °C. In a yet further aspect, storing is at a temperature of about -25 °C. In an even further aspect, storing is at a temperature of abour - 30 °C. In an even still further aspect, storing is at a temperature of abour -35 °C. In an even further aspect, storing is at a temperature of abour -40 °C. In an even yet further aspect, storing is at a temperature of abour -45 °C. In a further aspect, storing is at a temperature of abour -50 °C. In a still further aspect, storing is at a temperature of about -55 °C.
- storing is at a temperature of about -60 °C. In an even further aspect, storing is at a temperature of abour -65 °C. In an even still further aspect, storing is at a temperature of abour -70 °C. In an even further aspect, storing is at a temperature of abour -75 °C. In an even yet further aspect, storing is at a temperature of abour -80 °C. [00341] In various aspect, storing is at a temperature of about 5 °C or less. In a further aspect, storing is at a temperature of abour 4 °C. In a still further aspect, storing is at a temperature of about 3 °C.
- storing is at a temperature of about 2 °C. In an even further aspect, storing is at a temperature of abour 2 °C. In an even still further aspect, storing is at a temperature of abour 0 °C. In an even further aspect, storing is at a temperature of abour -1 °C. In an even yet further aspect, storing is at a temperature of abour -2 °C. In a further aspect, storing is at a temperature of abour -3 °C. In a still further aspect, storing is at a temperature of about -4 °C. In a yet further aspect, storing is at a temperature of about -5 °C. H.
- the invention relates to the use of a disclosed peptide or a product of a disclosed method.
- the disclosed peptides are useful in preventing or reducing damage caused by ice creation and ice recrystallization and can be formulated into a composition (e.g., a cryoprotectant composition, an agricultural composition, a cosmetic composition) to facilitate use in these areas.
- a composition e.g., a cryoprotectant composition, an agricultural composition, a cosmetic composition
- the peptide used is a product of a disclosed method of making.
- the use relates to a process for preparing a composition comprising an effective amount of a disclosed peptide or a product of a disclosed method of making, or an acceptable salt thereof, wherein an acceptable carrier is intimately mixed with an effective amount of the peptide or the product of a disclosed method of making.
- an acceptable carrier is intimately mixed with an effective amount of the peptide or the product of a disclosed method of making.
- the disclosed uses can be employed in connection with the disclosed peptides, products of disclosed methods of making, methods, compositions (e.g., a cryoprotectant composition, an agricultural composition, a cosmetic composition), food products, solid and semi-solid supports, and kits. 1.
- kits comprising a disclosed peptide and one or more selected from: (a) a biological material; (b) a food product; (c) an agricultural product; (d) a solid or semi-solid support; and (e) a cosmetic.
- the peptide comprises a plurality of alanine residues and a plurality of glycosylated threonine residues, glycosylated serine residues, and a mixture of glycosylated threonine residues and glycosylated serine residues, wherein the ratio of the plurality of alanine residues to the plurality of glycosylated residues is from about 3:2 to about 4:1, and wherein the peptide has a chain length of at least 30 amino acid residues; and one or more selected from: (a) a biological material; (b) a food product; (c) an agricultural product; (d) a solid or semi-solid support; and (e) a cosmetic.
- the kit includes the biological material.
- the biological material is selected from a non-antifreeze protein (e.g., an enzyme, a hormone, an antibody, a growth factor, a vaccination protein, a therapeutic protein, or a nutrient protein), a microbe (e.g., a virus, a bacteria, an archaea, a fungi, and a protists), a cell component (e.g.
- a non-antifreeze protein e.g., an enzyme, a hormone, an antibody, a growth factor, a vaccination protein, a therapeutic protein, or a nutrient protein
- a microbe e.g., a virus, a bacteria, an archaea, a fungi, and a protists
- a cell component e.g.
- the kit includes the food product.
- kits includes the agricultural product.
- agricultural products include, but are not limited to, grains, feeds, soybeans, tree nuts, fruits, and vegetables.
- the kit includes the solid or semi-solid support.
- solid and semi-solid supports include glasses, semiconductor materials, ceramic materials, metal surfaces, and other substrates on which the peptide or the residue of the peptide, as defined herein, can adhere. Additional examples of solid and semi-solid supports include, but are not limited to, glass beads, silica-based resins, cellulosic resins, agarose beads, polystyrene beads, or polyacrylamide resins.
- the support can be solid or semi-solid (e.g., gel-like, such as a polymer support composed of hydrogel polymers) as further described herein.
- the kit includes the cosmetic.
- Example of cosmetics include, but are not limited to, lips balms, hair products, makeup, nail products, soaps, and lotions.
- the disclosed peptide and the biological material are co- formualated.
- the disclosed peptide and the food product are co- formualated.
- the disclosed peptide and the agricultural product are co- formualated.
- the disclosed peptide and the solid or semi-solid support are co-formualated.
- Infrared spectra were recorded on a Bruker Alpha ATR-FTIR Spectrophotometer. All polymerizations were monitored for completion via ATR-FTIR.
- Deionized water (18 M ⁇ - cm) was obtained by passing in-house deionized water through a Thermo Scientific MicroPure UV/UF purification unit.
- Tandem size exclusion chromatography/refractive index (SEC/MALS/RI) was performed on an Agilent 1260 Infinity liquid chromatograph pump equipped with a Wyatt DAWN HELEOS-II light scattering (LS) and Wyatt Optilab T-rEX refractive index (RI) detectors.
- the applied dn/dc for ⁇ / ⁇ GalOAc4Thr, ⁇ / ⁇ GalNAcOAc3Thr, and ⁇ Gal ⁇ GalNAcThr copolymers were 0.0456, 0.0462, and 0.0723, respectively.
- CD measurements of the polypeptide solutions were recorded in quartz cells with a path length of 0.1 cm, on a JASCO J-1500 CD spectrophotometer.
- 1 H and 13 C NMR spectra were recorded on a Varian Mercury spectrometer (400 MHz) or a Bruker AVANCE NEO spectrometer (500 MHz) and are reported relative to deuterated solvent. Data for 1 H NMR are reported as follows: chemical shift ( ⁇ ppm), multiplicity, coupling constant (Hz) and integration.
- reaction was stirred for 2 hours and reaction progress was monitored by TLC (2:1 hexanes:ethyl acetate, phosphomolybdic acid). Upon completion, the reaction was diluted with ethyl acetateand filtered through celite and cotton. The filtrate was washed 2 ⁇ with Na2S2O3, 2 ⁇ with aqueous sat. NaHCO3, 1 ⁇ with deionized water. The organic layer was dried over Mg2SO4, filtered, and concentrated. The crude product was purified using column chromatography (2:1 hexanes:ethyl acetate). The fractions were analyzed with TLC (2:1 hexanes:ethyl acetate, phosphomolybdic acid).
- GalOAc 4 -SPh and Z- Thr(benzylidene- ⁇ GalN3)-OBn coupling was performed by modifying a published procedure (Tseng, P. H.; et al., (2001) Chem. - A Eur. J. 7(3) 585-590).
- reaction was stirred for 2 hours and reaction progress was monitored by TLC (2:1 hexanes:ethyl acetate, phosphomolybdic acid). Upon completion, the reaction was diluted with Ethyl acetate and filtered through celite and cotton. The filtrate was washed 2 ⁇ with aqueous 10% Na 2 S 2 O 3 , then 2 ⁇ with aqueous saturated NaHCO3, and last 2 ⁇ with aqueous saturated NaCl. The organic layer was dried over Mg 2 SO 4 , filtered, and concentrated. The crude product was purified using column chromatography (2:1 hexanes:ethyl acetate).
- reaction was heated to 80 °C for 3 hours.
- the reaction was monitored by TLC (2:1 Ethyl acetate:hexanes, phosphomolybdic acid). Upon completion, the reaction was concentrated with toluene to produce a fluffy white solid (1.81 g, 91%). 1 H NMR analysis showed complete removal of the benzylidene, and the product was used directly in the next reaction.
- Zinc powder (2.1 g) was added to the solution and then saturated aqueous CuSO4 solution (4 mL) was added. The reaction was stirred at room temperature for 1 hour. The reaction was monitored by TLC (1.5:1 ethyl acetate:hexanes, phosphomolybdic acid). Upon completion, the reaction was filtered through celite and cotton, and the filtrate was concentrated with toluene to produce a chalky white solid which was used directly in the next reaction.
- the reaction was stirred overnight and allowed to warm to room temperature. The reaction was monitored by TLC (3:1 ethyl acetate:hexanes, phosphomolybdic acid). Upon completion, the reaction was cooled to 0 °C and quenched with 5 mL DI water. The aqueous layer was extracted 3 ⁇ with Ethyl acetate. The organic layer was then washed 2 ⁇ with 1M HCI, then 2 ⁇ with aqueous saturated NaHCO3, and lastly 2 ⁇ with aqueous saturated NaCl, and dried over Na 2 SO 4 . The crude product was purified using column chromatography (3:1 hexanes:ethyl acetate).
- the aqueous layer was extracted 3 ⁇ with dichloromethane and the combined organic layers dried over sodium sulfate. The organic layers were concentrated yielding a white solid.
- the crude product was purified using column chromatography (eluent 1:3 hexanes:ethyl acetate +1% acetic acid). Fractions were analyzed by TLC (1:3 hexanes:ethyl acetate + 1% acetic acid, phosphomolybdic acid) and combined to produce a white, fluffy solid (0.4935 g, 83% yield over two steps).
- the evaporate was sequestered in a tandem solvent trap system cooled by liquid nitrogen. The traps were immediately quenched with ammonium hydroxide.
- the crude product was purified using anhydrous silica chromatography (Kramer, J. R.; Deming, T. J. (2010) Biomacromolecules, 11(12), 3668- 3672) with 10% to 20% THF in dichloromethane. The collected fractions were analyzed by ATR-FTIR. NCA-containing fractions were combined resulting in 0.089 g of white solid (52% yield).
- the reaction solution was evaporated under reduced pressure.
- the evaporate was sequestered in a tandem solvent trap system cooled by liquid N 2 .
- the traps were immediately quenched with ammonium hydroxide.
- the crude product was purified using anhydrous silica chromatography' with 10% to 30% to 50% THF in DCM.
- the collected fractions were analyzed by ATR-FTIR. NCA containing fractions were combined resulting in 0.2232 g of white solid (72% yield).
- the concentrate was recovered, frozen, and lyophilized. Samples can also be dialyzed against MilliQ water in 2000 MWCO dialysis tubing. iv. GENERAL METHOD FOR LABELING GLYCOPOLYPEPTIDES WITH AF594 FLUOROPHORE [00386]
- the deacetylated polypeptide was added to a 100 uM solution of sodium bicarbonate in MilliQ water for a final polymer concentration of 5 mg/mL.
- AF594 was dissolved in DMSO at 10 mg/mL.8 molar equivalents of AF594 were added to the polymer sodium bicarbonate solution.
- the tube containing the solution was wrapped in foil and placed on a shaker plate to react overnight.
- the solution was transferred to a 1kDa spin filter and concentrated at 4000 ⁇ g for 20 minutes.
- the concentrate was diluted three times with MilliQ and spin filtered at 4000 ⁇ g for 20 minutes each time.
- the concentrate was recovered, frozen, and lyophilized. Samples can also be dialyzed against MilliQ water in 2000 MWCO dialysis tubing.
- the labeled glycopolypeptide was stored at -20 °C and shielded from light. 2.
- GENERAL METHODS FOR SAFGP BIOLOGICAL AND ICE BINDING ASSAYS a.
- Polypeptide is added to MilliQ water to make a 10 ⁇ g/ ⁇ L stock solution.
- Polypeptide stock solution, 2X PBS, and protease (StcE or Proteinase K) were added to a reaction tube such that the protease to substrate ratio is 0.1.
- StcE was a gift from the lab of Carolyn Bertozzi and was expressed and purified according to literature (Malaker, Stacy A.; et al., (2019) Proc Natl Aced Sci 116(15) 7278-7287).
- Protease K was obtained from ThermoFisher (#AM2542).
- the solution is balanced with MilliQ water so that the final concentration of polymer is 1 ⁇ g/ ⁇ L in 1X PBS.
- the solution was placed in a 37 °C water bath and 10 uL timepoints were removed at 6, 24, 28 hours and after 7 days. Upon removal from the reaction vessel, timepoints are treated at 95 °C for 10 minutes to stop the protease activity. Samples are stored in -80 °C until analysis with electrophoresis.
- GENERAL METHOD FOR ELECTROPHORESIS AND SDS-PAGE 20 ⁇ g of polypeptide (with or without denatured protease) in PBS was combined with 4X loading buffer from BioRad to make a 1X solution of dye and polypeptide.
- Thermo Fisher Spectra Multicolor Broad Range Protein Ladder was applied to a separate well. The entire volume was applied to a well in a Bis-tris 4-12% gel from BioRad. The gel ran for 40 minutes at 175 V. Pro-Q® Emerald 300 Lipopolysaccharide Gel Stain Kit from ThermoFisher was used to stain the glycopolypeptide. Modifications to the established protocol include staining gel for 100 minutes and creating fresh oxidizer from periodic acid for each gel. After completing the staining process gels were imaged using a standard gel imager and exposed for 4.2 seconds.
- HEK 293 cells were plated at a density of 10,000 cells/well in a 96 well plate. The cells were incubated at 37 °C in 5% CO2 for 24 hours to allow the cells to adhere to the plate.
- the cells were then treated with polymer dissolved in complete media (DMEM with 10% FBS supplemented with 1% penicillin-streptomycin and 1% L-glutamine) for a final polymer concentration of 0.02, 0.2, 2.0 mg/mL. Additionally, other wells of cells are treated with 100- X Triton to kill cells for a positive control or media to serve a negative control. The treated cells were again incubated at 37 °C in 5% CO 2 for 24 hours. The cells were then dosed with 10 uL of CCK-8 solution (Dojindo) and incubated at 37 °C in 5% CO2 for 3 hours.
- CCK-8 solution Dojindo
- stage was warmed to -1.8 °C at a rate of 0.5 °C/min.
- stage temperature was then increased at a rate of 0.05 °C/min to - 1.5 to -1 °C depending on the polypeptide solution to isolate individual crystals.
- stage was then cooled at 0.02 °C/min to -2 to -1.5 °C to observe dynamic ice shaping.
- stage was then toggled between melting and freezing rates to observe the ice crystal change as the temperature was increased and then decreased. Images of the single crystals were taken as the temperature was decreased to observe ice crystal growth. e.
- hRBCs from a single unidentified patient were received one day after the drawing of the patient blood. Prior to acquiring the cells, the hRBCs underwent one centrifugation step and the plasma and buffy coat were removed. Upon, receiving the cells the hRBCs were dissolved in DPBS and then centrifuged at 500 ⁇ g for 5 min. The PBS was removed from the pelleted cells. This process was repeated twice to remove platelets and blood proteins. The hRBC pellet was then resuspended in PBS such that the final volume of cells was -40%.
- HEK 293 cells were plated on three 24 well plates and incubated at 37 °C in 5% CO 2 overnight to allow the cells to adhere. After 24 hours, the cell media was removed. A 100 uM solution of A594-( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)57 in MilliQ was diluted in complete media to make a 10 uM solution of polypeptide. The solution was sterile-filtered before 300 uL of the solution was applied to the cells.
- the cells were rinsed 3 ⁇ with DPBS and then resuspend.10 uL of cell suspension was applied to a slide and then covered with a coverslip. The cells were then fluorescently imaged to observe the localization of the fluorescent polymer. No internalization was observed.
- j. GENERAL METHOD FOR FREEZING HEK 293 CELLS FOR CRYOPROTECTION STUDIES [00397] Cells are cultured until 70-80% confluent. Cells are treated with 2 mL of 0.25% trypsin + EDTA for 1 min, neutralized with 4 mL of DMEM complete media, and then centrifuged at 125 ⁇ g for 3 min to pellet the cells.
- the media and trypsin are aspirated away and the pellet is resuspended in cryoprotection media.
- the 1 mL volumes of suspension were transferred into 2 mL cryovials and placed in a CoolCell (Corning) or Mr. Frosty (Nalgene) controlled freezing unit inside a -80 °C freezer for 24 hrs. After 24 hrs, the vials are thawed and analyzed. k.
- cryovials containing 1 mL of cells in cryoprotection media (DMEM with 10% FBS) are transferred from -80 °C to a bed of dry ice. The vials are then rapidly thawed in a 37 °C bath until the ice disappears. The cell suspension is then diluted 10-fold into pre-warmed complete media (DMEM with 10% FBS supplemented with 1% penicillin-streptomycin and 1% L-glutamine) dropwise. The suspension is then centrifuged and the media is aspirated.
- the cell pellet is resuspended in complete media and a trypan blue assay is performed to determine cell membrane integrity.
- l. GENERAL METHOD DETERMINING MEMBRANE INTEGRITY WITH TRYPAN BLUE ASSAY 10 uL of cell suspension is added to 10 uL of trypan blue and mixed. Then 10 uL of the combined solution is applied to a hemocytometer and the total number of cells and the number of blue cells were counted. The percent of cells with intact membranes was determined using the following equation. m.
- hRBCs were added to water and frozen for 100% hemolysis and for 0% hemolysis, hRBCs were incubated with DPBS at room temperature for 1 hr.
- 2-hydroxyethyl starch (Spectrum Chemical, H3012) was used.
- G ENERAL METHODS FOR MEASURING H RBC HEMOLYSIS AND CELL RECOVERY [00401] Hemolysis and cell recovery were determined with modifications to published procedures (Sun, Y.; et al., (2022) Biomacromolecules, 23(3), 1214-1220) .
- NCA amino acid N-carboxyanhydride
- FIG.1A-F structure of native AFGPs and preparation of sAFGP panel are shown.
- FIG.1A shows the chemical structure of the AFGP tripeptide repeat and native PPII helical conformation.
- FIG.1B shows the preparation of tunable sAFGPs by NCA polymerization using transition metal catalysis.
- FIG.1C shows the structures of the five glycans utilized in the sAFGP panel. sAFGPs were prepared with varying ratios of Ala:glyco- Thr (FIG.1D), molecular weights (FIG.1E), and glycans (FIG.1F). a.
- glyco-Thr conjugates and glyco-Ser conjugates were prepared bearing ⁇ Gal, ⁇ Gal, ⁇ GalNAc, ⁇ GalNAc, or native disaccharide ⁇ Gal(1 ⁇ 3) ⁇ GalNAc, which were abbreviate as ⁇ Gal ⁇ GalNAc (FIG.1C and FIG.1F).
- ⁇ Gal ⁇ GalNAc native disaccharide ⁇ Gal(1 ⁇ 3) ⁇ GalNAc
- the generally accepted mechanism is via adsorption ⁇ inhibition where the protein adopts an ice-binding surface and a non-binding surface (Knight, C. A.; et al., (1995) Cryobiology, 32(1), 23–34; Raymond, J. A.; DeVries, A. L. (1977) Proc. Natl. Acad. Sci. U. S. A.74(6), 2589–2593; Liu, K.; et al., (2016) Proc. Natl. Acad. Sci. U. S. A.113(51), 14739–14744; Ben, R. N. (2001) ChemBioChem 2(3), 161–166).
- the protein non-binding face After adsorption to an embryonic ice crystal via the binding surface, the protein non-binding face causes disorder in approaching liquid water molecules. This results in inhibited crystal growth, shaping of ice crystals, and lowering of the Tm.
- Molecular dynamics modeling of a 14-residue AFGP predicted the PPII secondary structure is essential and that ice-binding occurs via adsorption and nesting of Ala methyls in the cavities at the ice surface, driven by the entropy of dehydration (Mochizuki, K.; et al., (2016) J. Am. Chem. Soc.140(14), 4803–4811).
- the native amino acid ratio is 2:1 Ala:Thr.
- the ratio of glycan hydroxyls was increased by increasing the ratio to 1:1 or 1:2 (FIG.1D).
- Ala NCA was prepared from commercially available Ala in one step by treatment with phosgene in tetrahydrofuran (THF)( Kramer, J. R.; et al., (2015) Proc. Natl. Acad. Sci. 112(41), 12574–12579).
- Peracetylated glyco-Thr amino acid conjugates and peracetylated glyco-Ser amino acid conjugates were prepared using literature protocols (Tseng, P. H.; J et al., (2001) Chem. - A Eur. J.
- NCA:catalyst ratios were varied to tune chain length and various monomer feed ratios were employed to tune sAFGP composition. Reactions proceeded efficiently with complete monomer consumption as evidenced by attenuated total reflectance- Fourier transformed infrared spectroscopy (ATR-FTIR). Disappearance of the NCA carbonyl stretches at ca.1850 and 1790 cm -1 was observed and appearance of peptide carbonyl stretches at ca.1650 and 1540 cm -1 (FIG.7).
- FIG.8A-C show the ATR-FTIR spectrums for NCA monomers and
- FIG.9A-G shows ATR-FTIR spectrums for synthesized sAFGPs .
- Peracetylated sAFGPs were characterized by 1 H NMR and size exclusion chromatography coupled to multi-angle light scattering and refractive index (SEC/MALS/RI) run in dimethylformamide (DMF) with 0.1M LiBr. Representative SEC/MALS/RI data is shown in FIG.2A. MW and degree of polymerization (DP) correlated well with expected values. Representative GPC/MALS data for ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 78 is shown in FIG.10. AFGP polypeptides used in this study are summarized in Table 1.
- Table 1 shows the antifreeze polymer panel nomenclature, molar masses, and chain lengths for glycosylated threonine polymers. TABLE 1.
- Table 2 shows the antifreeze polymer panel nomenclature, molar masses, and chain lengths for glycosylated serine polymers. TABLE 2.
- CD spectroscopy was used to characterize the secondary structures of our panel of sAFGPs. Distinct signatures are observed for the ⁇ * and ⁇ transitions of PPII, disordered, sheet, or ⁇ -helical conformations (Lopes, J. L. S.; et al., (2014) Protein Sci. 23(12), 1765–1772; van Stokkum, I. H.; et al., (1990) Anal. Biochem.191(1), 110–118; Provencher, S. W.; Glöckner, J. (1981) Biochemistry 20(1), 33–37; Chemes, L. B.; et al., (2012) Methods Mol.
- the ⁇ -helix is characterized by ellipticity minima at 222 and 208 nm and a maximum at 195 nm; PPII by a small positive maximum at ⁇ 218 nm and a large negative minimum at ⁇ 197nm; ⁇ -sheets by a positive band at ⁇ 198 nm and negative band from ⁇ 214 to 218 nm; disordered by no positive maximum and minor negative absorbances below 200 nm.
- PolyAla is a known ⁇ -helix former (Yang, J.; et al., (1998) J. Am. Chem. Soc.120(41), 10646–10652).
- the disaccharide sAFGP 170mer which is higher MW than the largest natural AFGP1 of 150 residues, appears to adopt a mix of conformations. This was reproducibly observed over multiple different batches and spectral runs. Without wishing to be bound by theory, the conformation could be a mixture of PPII and ⁇ -helical due to the shift of minima to 203nm and the development of a minimum at 223nm.
- One potential explanation is that larger structures allow formation of Ala-rich microdomains; though, it is surprising that an increase of only 32 residues could result in this effect.
- ⁇ -helical conformations have higher intensity absorbances at identical protein concentrations as compared to PPII conformations and therefore could be of low relative abundance.
- Glycan identity also plays a role in sAFGP conformation. Compared to 1:2 Thr:Ala structures bearing native disaccharide ⁇ Gal ⁇ GalNAc, polymers truncated to monosaccharide ⁇ GalNAc had lower PPII helical propensity as evidenced by reduced intensity of the absorbance at 217 nm (FIG.2D). This band is either further reduced or disappears for polymers bearing ⁇ Gal, ⁇ Gal, ⁇ GalNAc which adopt predominantly disordered conformations.
- FIG.2A-D the characterization of sAFGP molar masses and conformations was obtained.
- FIG.2A shows SEC/MALS/RI indicating differing elution times for peracetylated chains of increasing lengths.
- FIG.2B–D shows the aqueous CD spectra of deacetylated sAFGPs where FIG.2B are structures with increasing molecular weights, FIG.2C are structures with increasing ⁇ Gal ⁇ GalNAcThr content, and FIG.2D are structures bearing glycans of differing identity and anomeric orientation.
- FIG.13 shows CD spectra of ( ⁇ GalT x -s-A y ) n at various amino acid concentrations. Spectra in MilliQ at 25 °C.
- FIG.14 shows CD spectra of ( ⁇ GalNAcTx-s-Ay)n at various amino acid concentrations. An increase in 6.6% GalNAcThr content increases the solubility of the polymer.
- Ice-shaping and IRI results for sAFGPs of ca.50 residues and with varied ⁇ Gal ⁇ GalNAcThr:Ala ratios are shown in (FIG.3B-D). It was found that both IRI activity and ice-shaping properties increased with increasing Ala content (FIG.3B-D). Polymers with 33% Ala displayed no IRI activity since there was no statistical difference in MGS relative to PBS alone. Similarly, there was no observable effect on ice crystal shape. An increase in Ala content to 50% resulted in minor IRI activity as evidenced by a 22% reduction in relative MGS. These polymers had little effect on crystal shape.
- FIG.3A-D ice binding properties of sAFGPs with varying amino acid compositions are shown.
- FIG.3A shows a cartoon illustration of ice binding and shaping in the presence of sAFGPs composed of 1:2, 1:1, or 2:1 ⁇ Gal ⁇ GalNAcThr:Ala.
- FIG.3B shows images of cooling splat assays and IRI activity for 71 ⁇ M sAFGP or 5 wt.% DMSO in PBS, or PBS alone.
- FIG.3C shows quantified IRI data as % MGS relative to PBS; mean and standard deviation, ** indicates p ⁇ 0.01.
- FIG.3D shows a ice shaping experiments with 71 ⁇ M sAFGP in PBS.
- FIG.22 shows images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)28.
- FIG.23 shows images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 57 .
- FIG.24 shows images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 170 .
- FIG.25 shows images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT0.5-s-A0.5)52.
- FIG.26 shows images of cooling splat assays and IRI activity for ( ⁇ Gal ⁇ GalNAcT0.66-s-A0.33)46.
- FIG.27 shows images of cooling splat assays and IRI activity for ( ⁇ GalNAcT 0.33 -s-A 0.66 ) 99 .
- FIG.28 shows images of cooling splat assays and IRI activity for ⁇ GalT0.33-s-A0.66)93.
- FIG.29 shows images of cooling splat assays and IRI activity for ( ⁇ GalNAcT0.33-s-A0.66)93.
- FIG.30 shows images of cooling splat assays and IRI activity for ( ⁇ GalT 0.33 -s-A 0.66 ) 93 .
- FIG.31 shows images of cooling splat assays and IRI activity for 28mer, 57mer and 170mer of ( ⁇ Gal ⁇ GalNAcT 0.33 -s- A 0.66 ) n at 70.7 ⁇ M.
- FIG.32 shows images of cooling splat assays and IRI activity for x:y ratios of 1:2, 1:1, and 2:1 ( ⁇ Gal ⁇ GalNAcT x -s-A y ) n at 70.7 ⁇ M.
- FIG.33 shows images of cooling splat assays and IRI activity for sugar residues ⁇ Gal, ⁇ GalNAc, ⁇ Gal, and ⁇ GalNAc glycoT0.33-s-A0.66)93 at 70.7 ⁇ M.
- FIG.34 shows images of cooling splat assays and IRI activity for 28mer, 57mer and 170mer of ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) n at 0.5 mg/mL.
- FIG.33 shows images of cooling splat assays and IRI activity for 28mer, 57mer and 170mer of ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) n at 0.5 mg/
- FIG. 35 shows images of cooling splat assays and IRI activity for sugar residues ⁇ Gal, ⁇ GalNAc, ⁇ Gal, and ⁇ GalNAc glycoT0.33-s-A0.66)93 at 0.5 mg/mL.
- FIG.36 shows images of cooling splat assays and IRI activity for controls with PBS, 5% DMSO, 10% DMSO, 50 ⁇ M PVA and 100 ⁇ M PVA.
- IRI and ice-shaping were also dependent upon sAFGP molecular weight (FIG.4A- C). Polymers of the native 1:2 ⁇ Gal ⁇ GalNAcThr:Ala ratio and degrees of polymerization of 28, 57, or 170 had IRI activity that increased with chain length.
- Absolute MGS is shown in FIG.4A and MGS relative to PBS is shown in FIG.4B.
- sAFGP 28mers offered an 89% reduction, 57mers a 94% reduction, and 170mers a 97% reduction.
- AFGP1-5 pooled structures of MWs ranging from 33.7–10.5kDa
- AFGP8 Budke, C.; et al., (2014) Cryst. Growth Des.14(9) 4285–4294; Meister, K.; et al., (2018) J. Am. Chem. Soc.140 (30), 9365–9368).
- FIG.17 shows quantified IRI data as % MGS relative to PBS for ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)170, PVA, and DMSO.
- sAFGP concentration is 71 ⁇ M in PBS.
- PVA concentrations are indicated on plot.
- Ice crystal MGSs from solutions of ( ⁇ GalT0.33-s-A0.66)93 and ( ⁇ GalT0.33-s-A0.66)93 were reduced to 12% and 15% of the MGS of PBS alone.
- ( ⁇ GalNAcT 0.33 -s-A 0.66 ) 93 and ( ⁇ GalNAcT0.33-s-A0.66)93 were more active and resulted in MGSs that were 8% and 5% of the MGS of PBS.
- IRI activity on mass rather than a molar basis was also compared and a similar trend was observed where the NAc glycans had higher activity (see SI).5% DMSO resulted in only a 54% relative reduction.
- FIG.4A-C ice binding data for sAFGPs composed of the native 1:2 glycoT:A ratio and with varied chain lengths and varied glycan structures is shown.
- FIG.4A shows the observed absolute MGS at varied concentrations for sAFGPs with the native ⁇ Gal ⁇ GalNAc disaccharide and with chain lengths of 28, 57, 170 residues.
- FIG.4B shows the quantified IRI data as % MGS relative to PBS for native disaccharide sAFGPs of varied chain lengths as compared to sAFGP 93mers bearing glycans of varied structure and anomeric linkages, PVA, or DMSO; sAFGP concentration is 71 ⁇ M in PBS; PVA and DMSO are at the indicated concentrations in PBS; ice crystal MGS was determined from cooling splat assays; mean and standard deviation; table of statistical significance is in the SI.
- FIG.4C shows the ice shaping experiments for native disaccharide sAFGPs of varied chain lengths as compared to sAFGP 93mers bearing glycans of varied structure and anomeric linkages; sAFGP concentration is 71 ⁇ M in PBS.
- IRI activity of lower MW ( ⁇ Gal ⁇ GalNAcT 0.33 -s-A 0.66 ) 57 was comparable to that of higher MW ( ⁇ GalNAcT 0.33 -s-A 0.66 ) 93 at equivalent concentrations. Ice-binding and IRI activity of PVA is known to increase with increasing MW (Inada, T.; Lu, S. S. I; (2003) Cryst.
- Soc.140 (30), 9365–9368) and the disaccharide sAFGPs (identical chemical composition to native AFGP).
- these data indicate that the ⁇ GalNAcThr group is important for ice-binding.
- the intramolecular hydrogen bond between the NAc and the peptide carbonyl observed by others (Mimura, Y.; et al., (1992) Int. J. Biol. Macromol.14(5), 242–248; Coltart, D. M.; et al., (2002) J. Am. Chem.
- Soc.124(33), 9833–9844) could potentially orient the Thr methyl groups favorably for interaction with ice surfaces or induce long-range structural effects optimal for ice-binding.
- d. CYTOCOMPATIBILITY, CELL INTERNALIZATION, AND DEGRADATION OF SAFGPS [00433] Considering the many biomedical applications of sAFGPs, information was sought about their interaction with living tissues in terms of cytotoxicity, degradation, and cellular internalization. In Antarctic fish, AFGPs were found in the interstitial fluid of all body tissues examined except brain tissue, but no tissue showed any intracellular accumulation of AFGPs from the blood (Ahlgren, J. A.; et al., (1988) J. Exp.
- hRBCs human red blood cells
- HEK 293 cells human embryonic kidney cells
- All cells were incubated with 10 ⁇ M sAFGP-594 for 1 hour at 37 °C and then imaged. It was found that the sAFGPs were substantially internalized and localized throughout Raji and HEK cells but did not accumulate in hRBCs ((FIG.5A) for HEK, for Raji (FIG.18) and hRBC data)).
- Proteolytic Enzym., 1–3 and StcE is a glycoprotease that cleaves before ⁇ GalNAc-bearing Ser/Thr residues (Malaker, S. A.; et al., (2019) Proc Natl Acad Sci 116(15) 7278–7287).
- ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)98 was selected as an sAFGP of moderate molar mass, treated with Pro K and StcE, and aliquots were removed at various timepoints up to one week. Samples were analyzed by SDS-PAGE and stained with a glycoprotein-specific fluorescent stain.
- FIG.19 shows how the concentration of sAFGP needed for protease digestion studies using SDS-Page was determined. ( ⁇ Gal ⁇ GalNAcT 0.33 - s-A 0.66 ) 57 was used for this experiment. [00436] Finally, the structures were examined for cytocompatibility.
- FIG.5C shows cryopreservation of HEK293 cells with varying treatments. Viability determined by CCK8 assay.
- FIG.5A shows the internalization of sAFGP AF594- ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)57 in HEK293 cells at 0, 23, or 37 ⁇ C.
- FIG.5B shows the SDS- PAGE of protease-treated ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)98 at varied timepoints.
- FIG.5C shows the HEK 293 cell viability as determined by CCK8 assay following 24-hour incubation with sAFGP ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)57 at the indicated concentrations; mean and standard deviation; ** indicates p ⁇ 0.01. e.
- % glycerol are still standard freezing protocols for mammalian cells. Both molecules pass through cell membranes and form strong hydrogen bonds with water, slowing diffusion and delaying the formation and growth of ice crystals (He, Z.; L; et al., (2016) Acc. Chem. Res.2018, 51 (5), 1082–1091).
- DMSO and glycerol have well-known toxic effects (Best, B. P. (2015) Rejuvenation Res 18(5), 422; Si, W.; et al., (2004) Am. J. Primatol.62(4), 301–306; Graham, J. E.; et al., (2015) Am. J. Vet. Res.76(6), 487–493; Kielberg, V.
- HES is a newer potential vitrifying cryoprotectant favorable due to lack of membrane permeability and easy removal by cell washing (Stolzing, A.; N; et al., (2012) Transfus. Apher. Sci.46(2) 137–147; Lionetti, F. J.; et al., (2004) Cryobiology 1976, 13 (5), 489–499).
- HES is better tolerated by cells than DMSO or glycerol, but is still associated with osmotic shock, apoptosis, and hemolysis at higher concentrations (Stolzing, A.; N; et al., (2012) Transfus. Apher. Sci.46(2) 137–14; Graham, J. E.; et al., (2015) Am. J. Vet. Res.76(6), 487–493). Additionally, excessive solution viscosity presents processing challenges. [00439] AFGPs have been proposed as a solution to replace or reduce reliance on chemical vitrification agents.
- FIG.6A and FIG.6B Flash freezing hRBCs in liquid nitrogen cryoprotection media supplemented with 130 mg/mL HES and 0–400 ⁇ g/mL ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)170 resulted in 80% cell recovery after thawing at 23 °C for HES alone (FIG.6A and FIG.6B). Survival was 3% for PBS alone. Data shown in FIG.6A-C are the result of two separate experiments performed in triplicate. Cell survival with HES was so high that any effects from our sAFGPs were not observable. Lower cell survival in the prior work might be attributed to differences in HES molecular weight or functionalization degree, which was not reported.
- FIG.6A-C cryopreservation of hRBCs in sAFGP supplemented HES solutions or PBS alone is shown.
- FIG.6A shows schematic representation of hRBC cryopreservation experimental workflow and cell hemolysis as the assessment metric of cell survival.
- FIG.6B and FIG.6C show the post-thaw intact hRBC cell recovery by hemolysis assays after freezing with sAFGP ( ⁇ Gal ⁇ GalNAcT0.33-s-A0.66)170 and 130mg/mL HES (FIG. 6B) or 40mg/mL HES (FIG.6C).
- FIG.21 shows cryopreservation of hRBC with varying HES concentrations.
- C ONCLUSIONS [00444] AFGPs are of great interest for application as cryoprotectants in agriculture, food, surface coatings, and in biomedical tissue cryopreservation. Yet, isolation of AFGPs from polar organisms is cumbersome and impractical, impeding studies of this unique class of structures. Even their molecular mechanisms of action are still debated. Here, a rapid and scalable route to synthetic AFGPs that allows facile tuning of molecular properties from molar mass to glycan and amino acid compositions is presented.
- hydrophobic Ala plays a key role in ice- binding and that antifreeze activity increases with molecular weight.
- Five glycan structures were examined and while the native disaccharide was most potent, all displayed antifreeze activity.
- the sAFGPs can be biodegraded, are non-toxic, and are internalized by endocytosing human cell lines, but do not alter cryopreservation outcomes of red blood cells when used in combination with HES. Overall, the sAFGPs performed nearly identically to native AFGPs in ice-binding studies indicating our materials have great promise as surrogates for these hard-to-access natural structures.
- Antifreeze Glycoproteins Relationship between Molecular Weight, Thermal Hysteresis and the Inhibition of Leakage from Liposomes during Thermotropic Phase Transition. Comp. Biochem. Physiol. - B Biochem. Mol. Biol.2001, 128 (2), 265–273. https://doi.org/10.1016/S1096-4959(00)00323-7. [00449] Voets, I. K. From Ice-Binding Proteins to Bio-Inspired Antifreeze Materials. Soft Matter 2017, 13 (28), 4808–4823. https://doi.org/10.1039/C6SM02867E. [00450] Meldolesi, A. GM Fish Ice Cream. Nat.
- Ice Recrystallisation Inhibiting Polymers Prevent Irreversible Protein Aggregation during Solvent-Free Cryopreservation as Additives and as Covalent Polymer-Protein Conjugates. Eur. Polym. J.2020, 140, 110036. https://doi.org/10.1016/J.EURPOLYMJ.2020.110036. [00506] Graham, B.; Fayter, A. E. R.; Houston, J. E.; Evans, R. C.; Gibson, M. I. Facially Amphipathic Glycopolymers Inhibit Ice Recrystallization. J. Am. Chem. Soc.2018, 140 (17), 5682–5685.
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