WO2024259048A2 - Thiazolopyridin-7(4h)-one wrn inhibitors - Google Patents

Thiazolopyridin-7(4h)-one wrn inhibitors Download PDF

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WO2024259048A2
WO2024259048A2 PCT/US2024/033732 US2024033732W WO2024259048A2 WO 2024259048 A2 WO2024259048 A2 WO 2024259048A2 US 2024033732 W US2024033732 W US 2024033732W WO 2024259048 A2 WO2024259048 A2 WO 2024259048A2
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independently selected
membered
optionally substituted
ring
nitrogen
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WO2024259048A3 (en
Inventor
Derun Li
Florian Bartels
Justin Caravella
Robert Lee Dow
Nathan E. GENUNG
Silvana Marcel LEIT DE MORADEI
Angela V. West
Nikolay SITNIKOV
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Nimbus Wadjet Inc
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Nimbus Wadjet Inc
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Publication of WO2024259048A3 publication Critical patent/WO2024259048A3/en
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/02Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
    • C07D513/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D519/00Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00

Definitions

  • the invention provides bicyclic compounds and compositions, the use thereof and methods using the compounds, for inhibiting Werner Syndrome RecQ DNA helicase (WRN) and methods of treating disease using said compounds, in particular the use in treating cancer, and in particular the treatment of cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), including colorectal, gastric and endometrial cancer.
  • WRN Werner Syndrome RecQ DNA helicase
  • MSI-H microsatellite instability-high
  • dMMR mismatch repair deficient
  • the invention also provides the use of said compounds as research chemicals, intermediate compounds, combinations, processes and formulations.
  • Loss of DNA mismatch repair is a common initiating event in cancer development occurring in 10-30% of colorectal, endometrial, ovarian and gastric cancers (Aaltonen, L. A. et al. Clues to the pathogenesis of familial colorectal cancer, Science 260, 812-816 (1993), Bonneville R et al., Landscape of Microsatellite Instability Across 39 Cancer Types. JCO Precis Oncol. 1 : PO.17.00073 (2017)). Cancers that are deficient in mismatch repair (dMMR) have a high mutational burden, and frequent deletion and insertion events in repetitive DNA tracts, a phenotype known as microsatellite instability (MSI).
  • MSI microsatellite instability
  • WRN helicase is a synthetic lethal target in microsatellite unstable cancers. Nature 568, 551-556 (2019). Kategaya, L., Perumal, S. K., Hager, J. H. & Belmont, L. D. Werner syndrome helicase is required for the survival of cancer cells with microsatellite instability. iScience 13, 488-497 (2019), Lieb, S. et al. Werner syndrome helicase is a selective vulnerability of microsatellite instability-high tumor cells. eLife 8, e43333 (2019)). WRN is synthetically lethal with MSI cancers.
  • WRN helicase provides a DNA repair and maintenance function that is essential for cell survival in MSI cancers. Recently, the mechanism of WRN dependence has been elucidated.
  • dinucleotide TA repeats are selectively unstable in MSI cells and undergo large scale expansions. These expanded TA repeats form secondary DNA structures that require the WRN helicase for unwinding (van Wietmarschen, N. et al. Repeat expansions confer WRN dependence in microsatellite-unstable cancers. Nature 586, 292-298, 2020).
  • WRN or upon WRN helicase inhibition
  • expanded TA repeats in MSI cells are subject to nuclease cleavage and chromosome breakage.
  • inhibiting the WRN helicase is an attractive strategy for the treatment of MSI-H cancers.
  • the invention provides compounds, pharmaceutically acceptable salts thereof, pharmaceutical compositions thereof and combinations thereof, said compounds being inhibitors of Werner Syndrome RecQ DNA Helicase (WRN).
  • WRN Werner Syndrome RecQ DNA Helicase
  • the invention further provides methods of treating, preventing, or ameliorating a disease or condition, comprising administering to a subject in need thereof an effective amount of a WRN inhibitor.
  • the invention also provides compounds, pharmaceutically acceptable salts thereof, pharmaceutical compositions thereof and combinations thereof, said compounds being useful for the treatment of cancer, in particular cancers characterized as microsatellite instability-high (MSI- H) or mismatch repair deficient (dMMR). Also provided are compounds that bind to, and/or inhibit WRN, and are therefore useful as research chemicals, e.g., as a chemical probe, and as tool compounds. Various embodiments of the invention are described herein.
  • the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof: wherein R 1 , R 2 , R 3 , R 4 , Y, Z, L and Ring A are as described and defined herein.
  • the invention provides a pharmaceutical composition comprising a compound of Formula I of the present invention and one or more pharmaceutically acceptable carriers.
  • the invention provides a combination, in particular a pharmaceutical combination, comprising a compound of Formula I of the present invention and one or more therapeutically active agents.
  • the invention provides a compound of Formula I of the present invention for use as a medicament, in particular for the treatment of a disorder or disease which can be treated by WRN inhibition.
  • the invention provides a compound of Formula I of the present invention for use in the treatment of cancer, particularly wherein the cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
  • MSI-H microsatellite instability-high
  • dMMR mismatch repair deficient
  • the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I of the present invention.
  • the invention provides a method of treating cancer in a subject, more particularly wherein the cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), comprising administering to the subject a therapeutically effective amount of a compound of Formula I of the present invention.
  • MSI-H microsatellite instability-high
  • dMMR mismatch repair deficient
  • the invention provides the use of a compound of Formula I of the present invention in the manufacture of a medicament for the treatment of a disorder or disease which can be treated by WRN inhibition.
  • the invention provides a compound of Formula I of the present invention for use as a research chemical, for example as a chemical probe or as a tool compound.
  • the invention provides a solid form, process or intermediate as described herein.
  • the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof:
  • Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein - denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is
  • L is a linker selected from
  • R 1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, Ci-Cealkyl, haloCi-Cealkyl, Cs-Cecycloalkyl, Ci-Cealkoxy, and C3- Cscycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected R A ; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C 1 -C 6 aliphatic, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, and C 3 -C 6 cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted
  • the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I, or a pharmaceutically acceptable salt thereof, of the present invention.
  • the disclosure provides a compound of Formula I’, or a pharmaceutically acceptable salt thereof: I’
  • R 4 is selected from one of a), b), a)
  • R 4 is a Ring B that is selected from the group consisting of: whe p y g p g ula I’; and wherein: any substituents that are present on Ring B selected from R 4A , R 4B , R 4C , R 4D , R 4E , and R F are each independently selected from hydrogen; -OH, halogen; -CN; C 1 -C 4 alkyl; C 2 - C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkyl
  • the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I’, or a pharmaceutically acceptable salt thereof, of the present invention.
  • the disclosure provides a compound of Formula I’’, or a pharmaceutically acceptable salt thereof: I’’ wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; L is a linker selected from
  • the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I”, or a pharmaceutically acceptable salt thereof, of the present invention.
  • Stereocenters marked with “&1” or “andl” indicate that the compound material has a mixture of R and S- configured stereoisomers with respect to the marked stereocenter and is in the same relative configuration to each other if they share the same label such as “andl” or “&1”.
  • aliphatic or “aliphatic group,” as used herein, means a straight-chain (i.e., unbranched) or branched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation, or a monocyclic hydrocarbon or bicyclic hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic (also referred to herein as “carbocycle,” “cycloaliphatic” or “cycloalkyl”), that has a single point of attachment to the rest of the molecule.
  • aliphatic groups contain 1-6 aliphatic carbon atoms.
  • aliphatic groups contain 1-5 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-4 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-3 aliphatic carbon atoms, and in yet other embodiments, aliphatic groups contain 1-2 aliphatic carbon atoms.
  • “cycloaliphatic” (or “carbocycle” or “cycloalkyl”) refers to a monocyclic C3-C6 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule.
  • Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl groups and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.
  • bridged bicyclic refers to any bicyclic ring system, i.e., carbocyclic or heterocyclic, saturated or partially unsaturated, having at least one bridge.
  • a “bridge” is an unbranched chain of atoms or an atom or a valence bond connecting two bridgeheads, where a “bridgehead” is any skeletal atom of the ring system which is bonded to three or more skeletal atoms (excluding hydrogen).
  • a bridged bicyclic group has 5-12 ring members and 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur unless otherwise specified, a bridged bicyclic group is optionally substituted with one or more substituents as set forth for aliphatic groups. Additionally or alternatively, any substitutable nitrogen of abridged bicyclic group is optionally substituted.
  • alkyl refers to a C1-12 straight or branched saturated aliphatic group. In certain instances, alkyl refers to a Cns straight or branched saturated aliphatic group or a C1-6 straight or branched saturated aliphatic group. The term “lower alkyl” refers to a C1.4 straight or branched alkyl group.
  • Exemplary lower alkyl groups are methyl (-CH3), ethyl (-CH2CH3), propyl, isopropyl (also referred to interchangeably herein as 2-propyl, iPr, ‘Pr and i-Pr), butyl, isobutyl (also referred to interchangeably herein as 2-butyl, iBu, ‘Bu and i-Bu) and tert-butyl (also referred to interchangeably herein as 2-methyl-2 -butyl, tBu, ’Bu and t-Bu).
  • alkenyl refers to a C2-12 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond. In certain instances, alkenyl refers to a C2-8 or a C2-6 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond.
  • lower alkenyl refers to a C2-4 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond.
  • alkynyl refers to a C2-12 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond. In certain instances, alkynyl refers to a C2-8 or a C2-6 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond.
  • lower alkynyl refers to a C2-4 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond. Exemplary lower alkynyl groups are ethynyl, 1-propynyl, 2-propynyl, 1- butynyl, 2-butynyl, and 3-butynyl.
  • haloalkyl refers to a straight or branched alkyl group that is substituted with one or more halogen atoms.
  • lower haloalkyl refers to a C1-4 straight or branched alkyl group that is substituted with one or more halogen atoms.
  • heteroatom means one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, or silicon; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2/f-pyrrolyl), NH (as in pyrrolidinyl) or NR + (as in N-substituted pyrrolidinyl).
  • the term “unsaturated,” as used herein, means that a moiety has one or more units of unsaturation.
  • the term “bivalent C 1-8 (or C 1-6 i.e., C 1 -C 6 ) saturated or unsaturated, straight or branched, hydrocarbon chain,” refers to bivalent alkylene, alkenylene, and alkynylene chains that are straight or branched as defined herein.
  • the term “bivalent,” to describe a cyclic (and noncyclic) group refers to, for example, bivalent carbocyclylene, phenylene, heterocyclylene, and heteroarylene that are bivalent moieties of carbocycles, phenyls, heterocycles, and heteroaryls described herein.
  • Non- limiting examples include . [ at is bivalent as described above (i.e., attached at two different points to the rest of the compound).
  • Non-limiting examples include cyclopropylene, cyclobutylene, cyclopentylene, or cyclohexylene as shown below.
  • a carbocyclylene may be saturated as in the examples shown above or partially unsaturated as in the examples shown below.
  • a carbocyclylene may be multi-cyclic, for example, bicyclic or tricyclic. Such multi- cyclic carbocyclylene systems may be saturated or partially unsaturated (while one ring of the bicyclic system may be aromatic it is to be understood that multi-cyclic ring systems that are not in their entirety aromatic may also fall under the definition of carbocyclylene).
  • the rings may form bridged, fused, or spiro systems. Non-limiting examples are shown below. spirocyclic bicyclic carbocyclylenes fused bicyclic carbocyclylenes bridged bicyclic carbocyclylenes
  • Heterocyclylene refers to a heterocyclic or heterocyclyl moiety that is bivalent as described above (i.e., attached at two different points to the rest of the compound) and may also be saturated or partially unsaturated. Non-limiting examples include those shown below. Heterocyclylene is understood to include bicyclic heterocyclylene systems. Non-limiting examples of bicyclic heterocyclylene moieties are also shown below and said bicyclic systems may be spirocyclic, fused, or bridged and may be saturated or partially unsaturated.
  • Phenylene refers to a phenyl moiety that is bivalent as described above
  • “Arylene” as used herein refers to an mono or multi-cyclic aryl (i.e., phenyl or a multi- cyclic aryl) moiety that is bivalent as described above (i.e., attached at two different points to the rest of the compound), wherein the arylene group contains no heteroatoms. Examples are shown below.
  • “Heteroarylene,” as used herein refers to a mono or multi-cyclic aryl ring system that contains at least one heteroatom wherein the ring system is bivalent as described above (i.e., attached at two different points to the rest of the compound). Examples are shown below.
  • alkylene refers to a bivalent alkyl group.
  • An “alkylene chain” is a polymethylene group, i.e., -(CH2) n - wherein n is a positive integer, preferably from 1 to 6, from 1 to 4, from 1 to 3, from 1 to 2, or from 2 to 3.
  • a substituted alkylene chain is a polymethylene group in which one or more methylene hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
  • Carbocyclyl (or heterocyclyl, aryl, phenyl, or heteroaryl) fused to” another phenyl, aryl, heteroaryl, carbocyclyl, or heterocyclyl, for example, a “phenyl or pyridyl” as used herein, may be referred to as “partially unsaturated” without said “carbocyclyl (or heterocyclyl, aryl, phenyl, or heteroaryl) fused to” the other ring requiring further unsaturation besides the carbon carbon bond which it shares with the ring to which it is fused (i.e., the “phenyl or pyridyl”). This is illustrated below. partially unsaturated cyclopentyl fused to phenyl, i.e., "cyclopentyl fused to phenyl"
  • a further example below shows a carbocyclyl moiety fused to a Ring B as defined in the embodiments herein.
  • Said carbocyclyl does not explicitly require a descriptor of “partially unsaturated” to describe said carbocyclyl because it shares two carbons with the aromatic pyridine to which it is fused.
  • Such language is used herein to describe such systems, for example, “R 4A and R 4B , along with their intervening atoms, join to form 4-7-membered carbocyclyl that is fused to Ring B” as shown in the image below.
  • Ring B may refer to a monocyclic ring (i.e., the pyridine shown below and its substituents which do not form a fused ring), without any further fused rings created by its substituents (i.e., R 4A and R 4B ). Any further fused ring created by the substituents of Ring B is described as being “fused to Ring B.” Likewise, R 4A and R 4B , along with their intervening atoms, join to form 4-7-membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B (not pictured), is subject to the same interpretation. embered car ocyclyl that is
  • alkenylene refers to a bivalent alkenyl group.
  • a substituted alkenylene chain is a polymethylene group containing at least one double bond in which one or more hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
  • halogen means F, Cl, Br, or I.
  • aryl used alone or as part of a larger moiety as in “aralkyl,” “aralkoxy,” or
  • aryloxyalkyl refers to monocyclic or bicyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members.
  • aryl may be used interchangeably with the term “aryl ring.”
  • aryl refers to an aromatic ring system which includes, but not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which may bear one or more substituents.
  • aryl is a group in which an aromatic ring is fused to one or more non-aromatic rings, such as indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like.
  • heteroaryl and “heteroar-,” used alone or as part of a larger moiety, e.g., “heteroaralkyl,” or “heteroaralkoxy,” refer to groups having 5 to 10 ring atoms, preferably 5, 6, 9 or 10 ring atoms; having 6, 10, or 14 n electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to five heteroatoms.
  • heteroatom refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quatemized form of a basic nitrogen.
  • Heteroaryl groups include, without limitation, pyrazinyl, pyrazolyl, pyridazinyl, pyridyl, pyrimidinyl, triazinyl, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl (i.e., 1,2,3-triazolyl), 1,2,4-triazolyl, 1,2,5-triazolyl, 1,3,4-triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, indolizinyl, purinyl, naphthyridinyl, and pteridinyl.
  • heteroaryl and “heteroar-,” as used herein, also include groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where unless otherwise specified, the radical or point of attachment is on the heteroaromatic ring or on one of the rings to which the heteroaromatic ring is fused.
  • Nonlimiting examples include indolyl, isoindolyl, benzothienyl, benzofuranyl, dibenzofuranyl, indazolyl, indolizinyl, isoindolin-l-only, l,2-dihydro-3H- pyrrolo[3, 4-c]pyri din-3 -onyl, 2,3-dihydro-lH-pyrrolo[3,4-c]pyridin-l-onyl, imidazo[l,2- a]pyridyl, imidazo[l,5-a]pyridyl, pyrazolo[l,5-a]pyridyl, pyrrolo[l,2-b]pyridazinyl, pyrrolo[l,2- a]pyrimidinyl, imidazo[l,2-b]pyridazinyl, imidazo[l,2-a]pyrimidinyl, benzimidazolyl, benzthiazolyl,
  • heteroaryl group may be mono- or bicyclic.
  • heteroaryl may be used interchangeably with the terms “heteroaryl ring,” “heteroaryl group,” or “heteroaromatic,” any of which terms include rings that are optionally substituted.
  • heteroarylkyl refers to an alkyl group substituted by a heteroaryl, wherein the alkyl and heteroaryl portions independently are optionally substituted.
  • heterocycle refers to the substituent * 3 .
  • heterocyclyl refers to the substituent * 3 .
  • heterocyclic radical refers to the substituent * 3 .
  • heterocyclic ring refers to a stable 5- to 7-membered monocyclic or 7-10-membered bicyclic heterocyclic moiety that is either saturated or partially unsaturated, and having, in addition to carbon atoms, one or more, preferably one to four, heteroatoms, as defined above.
  • Said 7-10-membered bicyclic heterocyclic moiety that is partially unsaturated may include an aryl or heteroaryl ring fused to a non-aromatic ring.
  • said 7-10-membered bicyclic heterocyclic moiety may include a bicyclic heterocyclyl as shown below:
  • the term “nitrogen” includes a substituted nitrogen.
  • the nitrogen in a saturated or partially unsaturated ring having 0-3 heteroatoms selected from oxygen, sulfur or nitrogen, the nitrogen may be N (as in 3,4-di hydro-2// pyrrol y I), NH (as in pyrrol i di nyl), or + NR (as in //-substituted pyrrol idinyl).
  • a heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure and any of the ring atoms can be optionally substituted.
  • saturated or partially unsaturated heterocyclic radicals include, without limitation, oxetanyl, azetidinyl, tetrahydrofuranyl, tetrahydrothiophenyl pyrrolidinyl, piperidinyl, pyrrolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, morpholinyl, 2-oxa-6- azaspiro[3.3]heptane, and quinuclidinyl.
  • heterocycle used interchangeably herein, and also include groups in which a heterocyclyl ring is fused to one or more aryl, heteroaryl, or cycloaliphatic rings, such as indolinyl, 3//-indolyl, chromanyl, phenanthridinyl, or tetrahydroquinolinyl.
  • a heterocyclyl group may be mono- or bicyclic.
  • heterocyclyl alkyl refers to an alkyl group substituted by a heterocyclyl, wherein the alkyl and heterocyclyl portions independently are optionally substituted.
  • Heterocyclyloxy refers to an -OR group wherein the R is a heterocyclyl. Nonlimiting examples are shown below.
  • partially unsaturated refers to a ring moiety that includes at least one double or triple bond.
  • partially unsaturated is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aryl or heteroaryl moieties, as herein defined.
  • compounds of the invention may contain “optionally substituted” moieties.
  • substituted whether preceded by the term “optionally” or not, means that one or more hydrogens of the designated moiety are replaced with a suitable substituent.
  • an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
  • Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
  • stable refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.
  • Suitable monovalent substituents on R° are independently halogen, -(CH 2 )o 2 R*, -(haloR*), -(CH 2 ) 0 2 OH, -(CH 2 ) O 2 OR’, -(CH 2 )O 2 CH(OR’) 2 ; -O(haloR’), -CN, -N 3 , -(CH 2 ) 0 2 C(O)R’, -(CH 2 ) O 2 C(O)OH, -(CH 2 ) O 2 C(O)OR*, -(CH 2 ) O 2 SR’, -(CH 2 ) O 2 SH, -(CH 2 ) O 2 NH 2 , - (CH 2 )O- 2 NHR*, -(CH 2 ) O 2 NR* 2 , -NO 2 , -SiR* 3
  • Suitable divalent substituents that are bound to vicinal substitutable carbons of an “optionally substituted” group include: -O(CR* 2 )2-3O- wherein each independent occurrence of R* is selected from hydrogen, C1-6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0- 4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • Suitable substituents on the aliphatic group of R* include halogen, -R*, -(haloR*), -OH, -OR*, -O(haloR’), -CN, -C(O)OH, -C(O)OR*, -NH 2 , -NHR*, -NR* 2 , or -NO2, wherein each R* is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C 1-4 aliphatic, -CH 2 Ph, -0(CH2)o iPh, or a 5-6- membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • Suitable substituents on a substitutable nitrogen of an “optionally substituted” group include -R ⁇ -NR ⁇ , -C(O)R f , -C(O)OR t , -C(O)C(O)R f , -C(O)CH 2 C(O)R t , -S(O) 2 R t , -S(O) 2 NR t 2, -C ⁇ NR ⁇ , -C(NH)NR t 2 , or -N(R t )S(O) 2 R t ; wherein each R ; is independently hydrogen, Ci-6 aliphatic which may be substituted as defined below, unsubstituted -OPh, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R’ 1 ', taken together with
  • Suitable substituents on the aliphatic group of R are independently halogen, -R*, -(haloR*), -OH, -OR*, -O(haloR*), -CN, -C(O)OH, -C(O)OR*, -NH 2 , -NHR*, -NR* 2 , or -NO 2 , wherein each R* is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C 1-4 aliphatic, -CH 2 Ph, -0(CH 2 )o iPh, or a 5-6- membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • the term “pharmaceutically acceptable salt” refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19.
  • Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases.
  • Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
  • organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecyl sulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2- hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pect
  • Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N (C, 4alkyl)4 salts.
  • Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like.
  • Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate.
  • structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, Z and E double bond isomers, Z and E conformational isomers and R a (or M) and S a (or P) atropisomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
  • structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
  • compounds having the present structures including the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this invention.
  • Such compounds are useful, for example, as analytical tools, as probes in biological assays, or as therapeutic agents in accordance with the present invention.
  • Ring A of a provided compound may be substituted with one or more deuterium atoms.
  • the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof: wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; -L- is a linker selected from ;
  • the disclosure provides a compound of Formula I x , or a pharmaceutically acceptable salt thereof: wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein if Y is S, then Z is N or wherein if Y is N, then Z is S and wherein the 5-membered ring comprising Z and Y is aromatic; R 1 is selected from groups a) to e): a)
  • the disclosure provides a compound of Formula F, or a pharmaceutically acceptable salt thereof: wherein Ring A represents: b) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or c) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein if Y is S, then Z is N or wherein if Y is N, then Z is S and wherein the 5-membered ring comprising Z and Y is aromatic;
  • R 1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C 1 -C 6 alkyl, haloC 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, and C 3 - C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected R A ; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further
  • the disclosure provides a compound of Formula I”, or a pharmaceutically acceptable salt thereof: wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected R A substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; L is a linker selected from ; R 1 is
  • the present invention provides a compound of Formula I, I’, I x , I y , or I’, wherein R 4 is selected from one of a), b), and c): a) R 4 is a Ring B that is selected from the group consisting of: wher and wherein: any substituents that are present on Ring B selected from R 4A , R 4B , R 4C , R 4D , R 4E , and R 4F are each independently selected from hydrogen; halogen; -OH; -CN; C 1 -C 4 alkyl; C 2 - C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; halo
  • Ring A is a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4- 7 membered saturated or partially unsaturated bivalent monocyclic carbocyclylene, wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-7 membered saturated or partially unsaturated bivalent monocyclic heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic and is a carbocyclylene, wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic and is a heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising 2 fused rings. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising a spirocyclic ring system. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising a bridged ring system.
  • Ring A is selected from and wherein Ring A is substituted with 0-4 independently selected R A substituents.
  • Ring A is . [0078] In some embodiments, Ring . [0079] In some embodiments, Ring . [0080] In some embodiments, Ring cted from one of the substituents of Table 1, Table 1a or Table 1b.
  • R 1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C 6 cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected R A ; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C 1 -C 6 aliphatic, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, and C 3 -C 6 cycloalkoxy, wherein said 9-10 membere
  • R 1 is a 5-6 monocyclic membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 - 3 groups independently selected from C 1 -C 6 alkyl, C 1 -C 6 alkoxy, C 3 -C 6 cycloalkyl, and C 3 - C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-2 independently selected R A .
  • R 1 is a 4- or 6-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
  • R 1 is a 6-8 membered saturated or partially unsaturated bridged bicyclic heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR 2 , optionally substituted C 1 - 4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
  • R 1 is a 3-7 membered optionally substituted carbocyclyl.
  • R 1 is an optionally substituted C 2 -C 4 alkenyl.
  • R 1 is cyclopropyl substituted C2-C4alkenyl. In some embodiments, R 1 is methyl substituted C2alkenyl. [0083] In some embodiments, R 1 is a 6-membered partially unsaturated heterocyclyl (having 1 oxygen atom).
  • R 1 is a 6-membered heteroaryl (having 1 nitrogen atom), said heteroaryl may be optionally substituted with 1 or 2 groups independently selected from C1- C 6 alkyl, C 1 -C 6 alkoxy, C 3 -C 6 cycloalkyl, and C 3 -C 6 cycloalkoxy, wherein said heteroaryl is further substituted with 0-1 R A , wherein R A is an optionally substituted C 1-6 aliphatic group.
  • R 1 is a 6-membered heteroaryl (having 2 nitrogen atoms), said heteroaryl may be optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C 3 -C 6 cycloalkyl, and C 3 -C 6 cycloalkoxy, wherein said heteroaryl is further substituted with 0-1 R A , wherein R A is an optionally substituted C1-6 aliphatic group.
  • R 1 is a bicyclic 9-10 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said bicyclic 9-10 membered heteroaryl is further substituted with 0-3 independently selected R A .
  • R 1 is a 5-membered heteroaryl (having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said 5-membered heteroaryl is optionally further substituted with 0-2 independently selected R A .
  • R 1 is a 5-membered heteroaryl (having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C 1 -C 6 alkyl, C 1 -C 6 alkoxy, C 3 -C 6 cycloalkyl, and C 3 -C 6 cycloalkoxy.
  • R 1 is a 5-membered heteroaryl (having 2 nitrogen atoms) substituted with 1 or 2 groups independently selected from C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said 5-membered heteroaryl is optionally further substituted with 0-1 R A , wherein R A is hydroxyl substituted C 1 -C 4 alkyl.
  • R 1 is a 5-6 membered heteroaryl (having 1-4 heteroatoms is independently selected from nitrogen, oxygen, and sulfur) optionally substituted with one group of C 1 -C 6 alkoxy or C 3 -C 6 cycloalkyl, wherein said 5-6 membered heteroaryl is optionally further substituted with 0-3 independently selected R A .
  • R 1 is pyridyl substituted with C1-C4alkoxy and further substituted with 0-2 R A substituents.
  • R 1 is 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur, and 0 or 1 additional ring nitrogen atoms), wherein said 5-membered heteroaryl is optionally substituted with Ci-Cealkyl, or C3- Cscycloalkyl and further substituted with 0-2 R A substituents.
  • R 1 is a) a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen; or b) a 6-8 membered saturated or partially unsaturated bridged bicyclic heterocyclyl (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optional
  • R 1 is a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
  • R 1 is a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) substituted with 1 group selected from Ci-C6alkoxy and C3-C6cycloalkyl, wherein said 5-6 membered heteroaryl is further substituted with 0-3 independently selected R A .
  • R 1 is
  • R 1 is
  • R 1 is , Table 1a or Table 1b.
  • R A is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C 1 -C 6 aliphatic, hydroxy-C 1 -C 6 alkyl, haloC 1 -C 6 alkyl, an optionally substituted C 3 - C 6 cycloalkyl, haloC 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, haloC 1 -C 6 alkoxy, C 3 -C 6 cycloalkoxy, haloC 3 - C6cycloalkoxy, C1-
  • R A is independently selected at each occurrence from the group consisting of halogen, -OR, or an optionally substituted C 1-6 aliphatic group. In some embodiments, R A is independently selected at each occurrence from a halogen. In some embodiments, R A is independently selected at each occurrence from an -OR. In some embodiments R A is an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur). In some embodiments, R A is an optionally substituted C3- C6cycloalkyl. In some embodiments, R A is independently selected at each occurrence from an optionally substituted C 1-6 aliphatic group.
  • R A is as selected from one of the substituents of Table 1, Table 1a or Table 1b.
  • R 2 is C(R B )2C(O)N(R)R 2A .
  • R 2 is C(R B ) 2 C(R B ) 2 C(O)N(R)R 2A .
  • R 2 is C(R B ) 2 C(R B ) 2 N(R)C(O)N(R)R 2A .
  • R 2 is C(R B )2C(R B )2N(R)C(O)R 2A .
  • R 2 is CH2C(O)N(H)R 2A . In some embodiments, R 2 is CH2CH2C(O)N(H)R 2A . In some embodiments, R 2 is CH 2 CH 2 N(R)C(O)N(R)R 2A . In some embodiments, R 2 is CH 2 CH 2 N(H)C(O)R 2A .
  • R 2 is C(R B )2C(O)N(H)R 2A , wherein R 2A is phenyl or bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, or haloC1- C 4 alkyl.
  • R 2 is C(R B ) 2 C(O)N(H)R 2A , wherein R 2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 -C 4 alkyl, or haloC 1 - C4alkyl.
  • R 2 is C(R B )2C(O)N(H)R 2A , wherein R 2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, or haloC 1 -C 4 alkyl. [00102] In some embodiments, R 2 is
  • R 2 is
  • R 2 is as selected from one of the substituents of Table 1, Table la or Table lb.
  • R B is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two R B taken together with the carbon to which they are attached form a cyclopropyl ring.
  • R B is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3.
  • R B is hydrogen.
  • two R B taken together with the carbon to which they are attached form a cyclopropyl ring.
  • R B is as selected from one of the substituents of Table 1, Table la or Table lb.
  • R 2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, Ci-C4aliphatic, haloCi-C4alkyl, C3-C6cycl
  • R 2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH.
  • R 2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, and –SF 5 , two substituents on adjacent atoms of the phenyl together with their intervening atoms form a 4-7 membered carbocyclyl fused to the phenyl, and two substituents on adjacent atoms of the phenyl together with their intervening atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl.
  • substituents on adjacent atoms of the phenyl together with their intervening atoms form a 4-7 membered carb
  • R 2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 -C 4 alkyl, haloC 1 -C 4 alkyl, C 3 -C 6 cycloalkyl, haloC 3 -C 6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5.
  • R 2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1- C 4 alkyl, and haloC 1 -C 4 alkyl.
  • R 2A is phenyl optionally substituted with a halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R 2A is phenyl optionally substituted with 2 substituents independently selected from halogen, C1-C4alkyl, and haloC1- C 4 alkyl. In some embodiments, R 2A is phenyl optionally substituted with 3 substituents independently selected from halogen, C 1 -C 4 alkyl, and haloC 1 -C 4 alkyl.
  • R 2A is pyridyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, and –SF 5 , two substituents on adjacent atoms of the pyridyl together with their intervening atoms form a 4-7 membered carbocyclyl fused to the pyridyl, and two substituents on adjacent atoms of the pyridyl together with their intervening atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the pyridyl.
  • R 2A is pyridyl optionally substituted with a halogen, C 1 -C 4 alkyl, or haloC 1 -C 4 alkyl. In some embodiments, R 2A is pyridyl optionally substituted with 2 substituents independently selected from halogen, C1-C4alkyl, and haloC1- C4alkyl. In some embodiments, R 2A is pyridyl optionally substituted with 3 substituents independently selected from halogen, C 1 -C 4 alkyl, and haloC 1 -C 4 alkyl.
  • R 2A is cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said cubanyl, partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -
  • R 2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl.
  • R 2A is bicyclo[2.2.2]octyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 -C 4 alkyl, and haloC 1 -C 4 alkyl.
  • R 2A is bicyclo[3.1.0]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 -C 4 alkyl, and haloC1-C4alkyl.
  • R 2A is cubanyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl.
  • R 2A is 2-oxabicyclo[2.1.1]hexan-4-yl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl.
  • R 2A is a saturated or partially unsaturated bridged 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said bridged ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3- C 6 cycloalkyl, haloC 3 -C 6 cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, C 3 -C 6 cycloalkoxy, haloC 3 -C 6 cycloalkoxy and –SF 5 .
  • R 2A is a saturated or partially unsaturated fused 5-, 6-, 7-, 8-, 9- , 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said fused ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC 3 -C 6 cycloalkoxy and –SF 5 .
  • R 2A is a saturated or partially unsaturated spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said spirocyclic ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 -C 4 alkyl, haloC 1 - C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6- cycloalkoxy, haloC3-C6cycloalkoxy and –SF5.
  • R 2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6- cycloalkoxy and –SF 5 .
  • R 2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R 2A is bicyclo[1.1.1]pentyl optionally substituted with a halogen, C1- C 4 alkyl, or haloC 1 -C 4 alkyl. In some embodiments, R 2A is bicyclo[1.1.1]pentyl optionally substituted with 2 substituents independently selected from halogen, C 1 -C 4 alkyl, and haloC 1 - C4alkyl.
  • R 2A is bicyclo[1.1.1]pentyl optionally substituted with 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl.
  • R 2A is Ring F selected from the group consisting of: , wherein x, y, and q are independently selected , , , p y from O, NR 15 , CHR 15 or CR 15 R 15 ; R 15 is independently selected from H, halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, C 3 -C 6 cycloalkoxy, haloC 3 -C 6 cycloalkoxy and –SF 5 .
  • R 2A is Ring F of the following structu , wherein R 15 is selected from halogen, C 1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6- cycloalkoxy and –SF 5 .
  • R 2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl and -OH.
  • R 2A is 2-benzimidazolyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C 1 - 4 alkyl and -OH.
  • R 2A is 3-quinolinyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl, and -OH.
  • R 2A is phenyl comprising a -CF 3 substituent or pyridyl comprising a -CF3 substituent.
  • R 2A is bicyclo[1.1.1]pentyl comprising a -CF3 substituent or bicyclo[1.1.1]pentyl comprising a -CHF 2 substituent.
  • R 2A is bicyclo[2.2.2]octyl comprising a -CF 3 substituent or bicyclo[2.2.2]octyl comprising a -CHF 2 substituent.
  • R 2A is bicyclo[3.1.0]pentyl comprising a -CF3 substituent or bicyclo[3.1.0]pentyl comprising a -CHF2 substituent.
  • R 2A is cubanyl comprising a -CF 3 substituent or cubanyl comprising a -CHF 2 substituent. [00125] In some embodiments, R 2A is as selected from one of the substituents of Table 1, Table 1a or Table 1b.
  • R 3 is hydrogen, C 1 -C 4 alkyl, C 3 -C 5 cycloalkyl, C 1 - C4alkoxy, -NHR 3A , -N(R 3A )2 or C1-C4alkylthio each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy.
  • R 3 is hydrogen.
  • R 3 is C 1 -C 4 alkyl optionally substituted with -OH, 1-5 independently selected halogen, or C 1 -C 4 alkoxy.
  • R 3 is C1-C4alkyl.
  • R 3 is -CH2CH3. In some embodiments, R 3 is -CH3. In some embodiments, R 3 is C3-C5cycloalkyl, C1-C4alkoxy, -NHR 3A , -N(R 3A )2 or C1- C 4 alkylthio optionally substituted with -OH, 1-5 independently selected halogen, or C 1 -C 4 alkoxy. In some embodiments, R 3 is C3-C5cycloalkyl optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy.
  • R 3 is C1-C4alkoxy optionally substituted with -OH, 1-5 independently selected halogen, or C 1 -C 4 alkoxy.
  • R 3 is - NHR 3A optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy.
  • R 3 is -N(R 3A )2 optionally substituted with -OH, 1-5 independently selected halogen, or C 1 -C 4 alkoxy.
  • R 3 is C 1 -C 4 alkylthio optionally substituted with - OH, 1-5 independently selected halogen, or C 1 -C 4 alkoxy.
  • R 3 is selected from the group consisting of C1-C4alkyl and C3-C5cycloalkyl. [00128] In some embodiments, R 3 is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00129] As described generally above, each R 3A is independently selected at each occurrence from C1-C4alkyl. In some embodiments, R 3A is -CH3. In some embodiments, R 3A is -CH2CH3. In some embodiments, R 3A is propyl. In some embodiments, R 3A is butyl. [00130] In some embodiments, R 3A is as selected from one of the substituents of Table 1, Table 1a or Table 1b.
  • L is a linker selected from -C(O)-, -S(O)-, -S(O) 2 -, and .
  • linker L is -C(O)-.
  • linker L is -S(O)-.
  • linker L is -S(O)2-.
  • linker L i is as selected from one of the substituents of Table 1, Table 1a or Table 1b.
  • R 4 is selected from one of a), b), and c): a) R 4 is a Ring B that is selected from the group consisting of
  • any substituents that are present on Ring B selected from R 4A , R 4B , R 4C , R 4D , R 4E , and R 4F are each independently selected from hydrogen; halogen; -OH; -CN; C 1 -C 4 alkyl; C 2 - C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR 13 R 14 ; or R 4A and R 4B , along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroary
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L n er a s onded to Ring A in Formula I; and wherein: R 4A , R 4C , and R 4D are each independently selected from hydrogen; halogen; -CN; C1- C 4 alkyl; C 2 -C 4 alkenyl; C 2 -C 4 alkynyl; haloC 1 -C 4 alkyl; C 1 -C 3 alkyl substituted with -OH, - OCH 3 , or -OCH 2 CH 3 ; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; or R 4C and R 4D , along with their intervening atoms, join to form 4-7 membered carbocyclyl or 4-7 membered heterocyclyl (having 1-4 heteroatom
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L Ring A in Formula I; and wherein: R 4A is -OCH3, -OCH2CH3, or -OCHF2; R 4C and R 4D are each independently selected from hydrogen; -CN; C 1 -C 4 alkyl; C 2 - C 4 alkenyl; C 2 -C 4 alkynyl; haloC 1 -C 4 alkyl; C 1 -C 3 alkyl substituted with -OH, -OCH 3 , or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR 13 R 14 ; and R 13 is independently selected at each occurrence from hydrogen and C 1 -C 4 alkyl optionally substituted with -OH, -OCH 3 , or -OCH 2 CH 3 ; R 14 is hydrogen or
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A is -OCH3, -OCH2CH3, or -OCHF2; R 4C and R 4D are each independently selected from hydrogen; -CN; C 1 -C 4 alkyl; C 2 - and R 4D are each independently selected from hydrogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2- C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; and R 13 is independently selected at each occurrence from hydrogen and C 1 -C 4 alkyl optionally
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L a s o e o Ring A in Formula I; and wherein: R 4A , R 4C , and R 4D are each independently selected from hydrogen; halogen; and C 1 - C4alkyl.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A , R 4B , and R 4C are each independently selected from hydrogen; halogen; -CN; C1- C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH 3 , or -OCH 2 CH 3 ; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; or R 4A and R 4B , along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A and R 4B , along with their intervening atoms, join to form 4-7-membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R 4C is hydrogen.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to Ring A in Formula I; and wherein: R 4A and R 4B , along with their intervening atoms, join to form 5-membered heterocyclyl (having 1 oxygen atom) that is fused to Ring B; and R 4C is hydrogen.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A , R 4B , and R 4D are each independently selected from hydrogen; halogen; -CN; C1- C 4 alkyl; C 2 -C 4 alkenyl; C 2 -C 4 alkynyl; C 1 -C 4 alkoxy; haloC 1 -C 4 alkyl; C 1 -C 3 alkyl substituted with -OH, -OCH 3 , or -OCH 2 CH 3 ; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; or R 4A and R 4B , along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L Ring A in Formula I; and wherein: R 4A and R 4D are each hydrogen; and R 4B is C 1 -C 4 alkyl.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A and R 4C are each independently selected from hydrogen; halogen; -CN; C 1 -C 4 alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with - OH, -OCH 3 , or -OCH 2 CH 3 ; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; and R 13 is independently selected at each occurrence from hydrogen and C 1 -C 4 alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R 14 is hydrogen; or NR 13 R 14 forms
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to Ring A in Formula I; and wherein: R 4A and R 4C are each independently selected from hydrogen and C 1 -C 4 alkyl.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L t at s bonded to Ring A in Formula I; and wherein: R 4A , R 4B , R 4C , R 4D , and R 4E are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3- C
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R 4A , R 4B , R 4C , R 4D , and R 4E are each independently selected from hydrogen; halogen; C1- C 4 alkyl; and C 1 -C 4 alkoxy; or R 4C and R 4D , along with their intervening atoms, join to form a 4- 7-membered heterocyclyl (having 1-3 nitrogen atoms) fused to Ring B; and R 4A , R 4B , and R 4E are each hydrogen.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L Ring A in Formula I; and wherein: R 4F and R 4A , along with their intervening atoms, join to form 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to Ring B; and R 4B and R 4C are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR 13 R 14 ; R 13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to Ring A in Formula I; and wherein: R 4F and R 4A , along with their intervening atoms, join to form 5-6-membered heteroaryl (having 1-2 nitrogen atoms) fused to Ring B; and R 4B and R 4C are each hydrogen.
  • R 4 is Ring B of the following structure: wherein * is a point of attachment to L Ring A in Formula I; and wherein: R 4A , R 4C , R 4D , and R 4F are each independently selected from hydrogen; halogen; -CN; C 1 - C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH 3 , or -OCH 2 CH 3 ; haloC 1 -C 4 alkoxy; C 3 -C 6 cycloalkyl; C 3 -C 6 cycloalkoxy; and NR 13 R 14 ; or R 4C and R 4D , along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl or optionally substituted heterocyclyl (having 1-4 heteroatom
  • R 4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy.
  • R 4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from OH, - CH3, -CHF2, cyclopropyl, and -OCH3.
  • R 4 is a C 1 -C 4 alkyl, C 1 -C 4 alkoxy, or C 3 -C 6 cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6-membered heterocyclyl, and optionally substituted 5-6- membered heterocyclyloxy.
  • R 4 is a C 1 -C 4 alkyl, substituted with 0-3 independently selected halogen, -CN, -OH, C 1 -C 4 alkyl, and C 1 -C 4 alkoxy.
  • R 4 is a C1-C4alkoxy, substituted with 0-3 independently selected halogen, -CN, -OH, C1-C4alkyl, and C1-C4alkoxy. In some embodiments, R 4 is a C3-C6cycloalkyl, substituted with 0-3 independently selected halogen, -CN, -OH, C 1 -C 4 alkyl, and C 1 -C 4 alkoxy. [00157] In some embodiments, R 4 is an isoxazolyl substituted with -OH or C1-C4alkoxy.
  • R 4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms) selected from the group consisting of thiophenyl, imidazolyl, pyrazolyl, tetrazolyl, thiazolyl, isothiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, oxazolyl, isoxazolyl, 1,2,4- oxadiazolyl, 1,2,3-triazolyl, 1,2,4-triazolyl, wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy.
  • R 4 is , , , , , , , , ,
  • R 4 is as shown in a substituent of Table 1, Table la or Table lb.
  • each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and
  • each R is independently hydrogen, or an optionally substituted Ci-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
  • two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, partially unsaturated ring, or heteroaryl ring (wherein said 4-7 membered saturated ring, partially unsaturated ring, or heteroaryl ring, has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
  • each R is independently hydrogen or a Ci-6 alkyl. In some embodiments, R is hydrogen.
  • each R is as selected from one or more of the substituents of Table 1, Table la or Table lb.
  • the compound of Formula I is a compound of Formula I-a, Formula I-b, or a pharmaceutically acceptable salt thereof:
  • Ring A, R 1 , R 2 , R 3 , and R 4 are as defined herein, both singly and in combination.
  • the compound of Formula l is a compound of Formula I-a, or I-b or a pharmaceutically acceptable salt thereof wherein Ring A, R 1 , R 2 , R 3 , and R 4 , are as defined herein, both singly and in combination and R 2a
  • the compound of Formula I is a compound of Formula I-a, Formula I-b, or a pharmaceutically acceptable salt thereof: wherein R 1 , R 2 , R 3 , and R 4 , are as defined herein, both singly and in combination, Ring A is
  • the compound of Formula I is a compound of Formula ILa, Formula Il-b, Formula ILc, or a pharmaceutically acceptable salt thereof: wherein Ring A, Linker L, R 2 , R 3 , Y, Z and R 4 , are as defined herein, both singly and in combination.
  • the compound of Formula I is a compound of Formula ILd
  • the compound of Formula I is a compound of Formula III-a, Formula III-b, Formula III-c, or a pharmaceutically acceptable salt thereof: wherein Ring A, R 1 , R 2 , Y, Z and R 3 , are as defined herein, both singly and in combination, and wherein: X is CH, CR 7 , or N; R 5 is -OH or halogen; R 6 is halogen, C1-4alkyl, or C1-4alkoxy; each R 7 is independently hydrogen, halogen, C 1-4 alkyl, or C 1-4 alkoxy; R 8 is C 1-4 alkyl; each of the 0-2 instances of R 9 is independently a hydrogen or C1-4alkyl.
  • X is CH or N; R 5 is -OH or fluoro; R 6 is fluoro, -CH 3 , or -OCH 3 ; each R 7 is independently hydrogen, fluoro, -CH3, or -OCH3; R 8 is -CH3; each instance of R 9 is independently a hydrogen or -CH 3 .
  • the compound of Formula I is a compound of Formula IV-a, Formula IV-b, Formula IV-c, or a pharmaceutically acceptable salt thereof: wherei ation and wherein: R 5 is -OH or halogen; and R 6 is halogen, C1-4alkyl, or C1-4alkoxy.
  • R 5 is -OH or fluoro
  • R 6 is fluoro, -CH3, or -OCH3.
  • the compound of Formula I is a compound of Formula V-a, Formula V-b, Formula V-c, or a pharmaceutically acceptable salt thereof:
  • Ring A, R 2 , Y, Z and R 3 are as defined herein, both singly and in combination, and wherein:
  • X is CH, CR 7 , or N; and each R 7 is independently hydrogen, halogen, Ci.4alkyl, or Ci.4alkoxy. In some embodiments: X is CH or N; and R 7 is hydrogen, fluoro, -CH3, or -OCH3.
  • the compound of Formula I is a compound of Formula Vl-a, Formula Vl-b, Formula VI-c, or a pharmaceutically acceptable salt thereof: VI-c wherein Ring A, R 2 , Y, Z and R 3 , are as defined herein, both singly and in combination, and wherein:
  • R 8 is Ci-4alkyl; and each of the 0-2 instances of R 9 are independently a hydrogen or Ci.4alkyl. In some embodiments: R 8 is -CH3; and each instance of R 9 is independently a hydrogen or -CH3.
  • the compound of Formula I is a compound of Formula Vll-a
  • Vll-a Vll-b wherein R 1 , R 2 , R 3 , R A and R 4 , are as defined herein, both singly and in combination.
  • the compound of Formula I is a compound of Formula Vll-a, or Vll-b or a pharmaceutically acceptable salt thereof: wherein R 1 , R 2 , R 3 , R A and R 4 , are as defined herein, both singly and in combination and R 2a is selected from
  • the compound of Formula I is a compound of Formula VII-c, Formula Vll-d, Formula VH-e, or a pharmaceutically acceptable salt thereof:
  • the compound of Formula I is a compound of Formula Vlll-a, Vlll-b, Formula VIII-c, or a pharmaceutically acceptable salt thereof: vm-c wherein R 1 , R 2 , Y, Z and R 3 , are as defined herein, both singly and in combination, and wherein: X is CH, CR 7 , or N; R 5 is -OH or halogen; R 6 is halogen, C1-4alkyl, or C1-4alkoxy; each R 7 is independently hydrogen, halogen, C 1-4 alkyl, or C 1-4 alkoxy; R 8 is C1-4alkyl; and each of the 0-2 instances of R 9 are independently a hydrogen or C1-4alkyl.
  • the compound of Formula I is a compound of Formula IX-a, Formula IX-b, Formula IX-c, or a pharmaceutically acceptable salt thereof: wherein Y, Z, R 2 and R 3 , are as defined herein, both singly and in combination and wherein: R 5 is -OH or halogen; and R 6 is halogen, C1-4alkyl, or C1-4alkoxy. In some embodiments: R 5 is -OH or fluoro; and R 6 is fluoro, -CH 3 , or -OCH 3 .
  • the compound of Formula I is a compound of Formula X-a, Formula X-b, Formula X-c, or a pharmaceutically acceptable salt thereof: wherein Y, Z, R 2 and R 3 , are as defined herein, both singly and in combination, and wherein: X is CH, CR 7 , or N; and each R 7 is independently hydrogen, halogen, C 1-4 alkyl, or C 1-4 alkoxy. [00180] In some embodiments: X is CH or N; and each R 7 is independently hydrogen, fluoro, -CH3, or -OCH3.
  • the compound of Formula I is a compound of Formula XI-a, Formula XI-b, Formula XI-c, or a pharmaceutically acceptable salt thereof: wherein Y, Z, R 2 and R 3 , are as defined herein, both singly and in combination, and wherein: R 8 is C1-4alkyl; and each of the 0-2 instances of R 9 are independently a hydrogen or C 1-4 alkyl. In some embodiments: R 8 is -CH 3 ; and each instance of R 9 is independently a hydrogen or -CH 3 .
  • the compound of Formula I is a compound of Formula X-a, Formula X-b, Formula X-c, or a pharmaceutically acceptable salt thereof:
  • R 2 is C(R B )2C(O)NH
  • R B is independently selected at each occurrence from hydrogen or -CH 3 ;
  • R 2A is phenyl, pyridyl, or bicyclo[1.1.1]pentyl each of which is optionally substituted with 1, or 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC 3 -C 6 cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, and –SF 5 ; or R 2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally,
  • the compound of Formula I is a compound of Formula X-d, Formula X-e Formula X-f, or a pharmaceutically acceptable salt thereof:
  • R 2 is C(R B )2C(O)NH
  • R B is independently selected at each occurrence from hydrogen or -CH 3 ;
  • R 2A is phenyl, pyridyl, or bicyclo[1.1.1]pentyl each of which is optionally substituted with 1, or 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC 3 -C 6 cycloalkyl, -OH, -CN, C 1 -C 4 alkoxy, haloC 1 -C 4 alkoxy, and –SF 5 ; or R 2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substitute
  • the compound of Formula I is selected from one of those depicted in Table 1, Table 1a, or Table 1b, or a pharmaceutically acceptable salt thereof.
  • Table 1a, or 1b identifies compounds by their IUPAC name and Table 2
  • Table 2a lists the same compounds and shows their chemical structure.
  • Table 1a’s, or Table 1b’s name for a compound and Table 2's, Table 2a’s, and Table 2b’s structure for that same compound;
  • Table 2's, Table 2a’s, and Table 2b’s compound structures will dominate and identify the compound corresponding to each respective compound number (I-#) in Table 1, Table 1a, or Table 1b.
  • compositions, methods of treatment and uses of compounds [00185]
  • the present invention provides a pharmaceutical composition comprising a compound of the present invention, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.
  • the composition comprises at least two pharmaceutically acceptable carriers, such as those described herein.
  • the pharmaceutical composition can be formulated for particular routes of administration such as oral administration, parenteral administration (e.g. by injection, infusion, transdermal or topical administration), and rectal administration, in particular oral administration. Topical administration may also pertain to inhalation or intranasal application.
  • compositions of the present invention can be made up in a solid form (including, without limitation, capsules, tablets, pills, granules, powders or suppositories), or in a liquid form (including, without limitation, solutions, suspensions or emulsions). Tablets may be either film coated or enteric coated according to methods known in the art.
  • the pharmaceutical compositions are tablets or gelatin capsules comprising the active ingredient together with one or more of: a) diluents, e.g., lactose, dextrose, sucrose, mannitol, sorbitol, cellulose and/or glycine; b) lubricants, e.g., silica, talcum, stearic acid, its magnesium or calcium salt and/or polyethylene glycol; for tablets also c) binders, e.g., magnesium aluminum silicate, starch paste, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose and/or polyvinylpyrrolidone; if desired d) disintegrants, e.g., starches, agar, alginic acid or its sodium salt, or effervescent mixtures; and e) absorbents, colorants, flavors and sweeteners.
  • diluents e.g., lactose, dextrose,
  • Typical approaches to solubilize compounds for parenteral administration are the optimization of the pH or the use of co-solvents (e.g. PEG300, PEG400, propylene glycol, or ethanol). If these approaches are, for any reason, not feasible, the use of surfactants may be considered (e.g. Tween® 80 or Cremophor EL®). Cyclodextrins are established as safe solubilizing agents. Compounds with a high solubility in natural oils may be solubilized in parenteral fat emulsions. [00187] There is also provided a pharmaceutical composition comprising a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, and one or more pharmaceutically acceptable carriers.
  • co-solvents e.g. PEG300, PEG400, propylene glycol, or ethanol.
  • surfactants e.g. Tween® 80 or Cremophor EL®
  • Cyclodextrins are established as safe solubilizing agents.
  • the compounds of Formula I of the present invention in free form or in pharmaceutically acceptable salt form, exhibit valuable pharmacological properties, e.g. WRN inhibiting properties, e.g. as indicated in vitro tests as provided in the next sections, and are therefore indicated for therapy, or for use as research chemicals, e.g. as a chemical probe, and as tool compounds.
  • WRN inhibiting properties e.g. as indicated in vitro tests as provided in the next sections
  • research chemicals e.g. as a chemical probe
  • tool compounds e.g. as a chemical probe
  • a compound of Formula I as described herein, as a research chemical, for example tool compound or chemical probe, in particular for research on WRN.
  • a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof for use in the treatment of cancer.
  • Cancers that may be treated by WRN inhibition include cancers that are characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
  • dMMR mismatch repair deficient
  • a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof may be useful in the treatment of a cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
  • a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, for use as a medicament for use as a medicament.
  • said use is: ⁇ for the treatment of a disease that is treated by WRN inhibition, ⁇ for the treatment of cancer, ⁇ for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), ⁇ for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), such as colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer, ⁇ for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate and endometrial cancer, or ⁇ for the treatment of cancer wherein
  • a method of: ⁇ modulating WRN activity in a subject comprising administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ⁇ inhibiting WRN in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ⁇ treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ⁇ treating cancer in a subject, comprising administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ⁇ treating cancer in a subject, comprising administering a compound of Formula I as described herein, wherein the cancer is characterized as microsatellite instability- high (MSI-H) or mismatch repair de
  • the cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer. More particularly, the cancer characterized as microsatellite instability-high (MSI- H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate and endometrial cancer.
  • Examples include uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma, prostate cancer and ovarian serous cystadenocarcinoma.
  • a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof ⁇ in therapy, ⁇ in the manufacture of a medicament, ⁇ in the manufacture of a medicament for the treatment of cancer.
  • said cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), ⁇ in the manufacture of a medicament for treatment of a disease which may be treated by WRN inhibition, wherein in particular, the cancer is characterized by microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), for example colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer, in particular, colorectal, gastric, prostate or endometrial cancer, or uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma,
  • the subject has or is identified as having a microsatellite instable (MSI-H) cancer, e.g., in reference to a control, e.g., a normal, subject.
  • MSI-H microsatellite instable
  • the subject has MSI-H advanced solid tumors, a colorectal cancer (CRC), endometrial, uterine, stomach or other MSI-H cancer.
  • CRC colorectal
  • endometrial or stomach cancer which cancer has or is identified as having a microsatellite instability (MSI-H), e.g., in reference to a control, e.g., a normal, subject.
  • MSI-H microsatellite instable
  • the compounds can be present in the form of one of the possible stereoisomers or as mixtures thereof, for example as pure optical isomers, or as stereoisomer mixtures, such as racemates and diastereoisomer mixtures, depending on the number of asymmetric carbon atoms.
  • the present invention is meant to include all such possible stereoisomers, including racemic mixtures, diasteriomeric mixtures and optically pure forms.
  • Optically active (R)- and (S)-stereoisomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. If the compound contains a double bond, the substituent may be E or Z configuration.
  • the cycloalkyl substituent may have a cis- or trans-configuration. All tautomeric forms are also intended to be included. [00196] Any formula given herein is intended to represent unlabeled forms as well as isotopically labeled forms of the compounds, in addition to the deuteration specifically claimed in Formula I. Isotopically labeled compounds have structures depicted by the formulae given herein except that one or more atoms are replaced by an atom having a selected atomic mass or mass number. Isotopes that can be incorporated into compounds of the invention include, for example, isotopes of hydrogen.
  • isotopes particularly deuterium (i.e., 2H or D) may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements or an improvement in therapeutic index or tolerability.
  • deuterium in this context is regarded as a substituent of a compound of the present invention.
  • concentration of deuterium may be defined by the isotopic enrichment factor.
  • isotopic enrichment factor as used herein means the ratio between the isotopic abundance and the natural abundance of a specified isotope.
  • a substituent in a compound of this invention is denoted as being deuterium, such compound has an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium incorporation), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation).
  • isotopic enrichment factor can be applied to any isotope in the same manner as described for deuterium.
  • isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, and chlorine, such as 3H, 11C, 13C, 14C, 15N, 18F 3 IP, 32P, 35S, 36CI, 1231, 1241, and 1251, respectively. Accordingly it should be understood that the invention includes compounds that incorporate one or more of any of the aforementioned isotopes, including for example, radioactive isotopes, such as 3H and 14C, orthose into which non-radioactive isotopes, such as 2H and 13C are present.
  • radioactive isotopes such as 3H and 14C
  • orthose into which non-radioactive isotopes such as 2H and 13C are present.
  • Such isotopically labelled compounds are useful in metabolic studies (with 14C), reaction kinetic studies (with, for example 2H or 3H), detection or imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT) including drug or substrate tissue distribution assays, or in radioactive treatment of patients.
  • PET positron emission tomography
  • SPECT single-photon emission computed tomography
  • an 18F or labeled compound may be particularly desirable for PET or SPECT studies.
  • Isotopically-labeled compounds of the present invention can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying Examples and Preparations using an appropriate isotopically-labeled reagents in place of the nonlabeled reagent previously employed.
  • a “compound of the present invention” or a “compound of Formula I” includes a zwitterion thereof, a non-zwitterion thereof (non-charged form), or a pharmaceutically acceptable salt of said zwitterionic or non-zwitterionic form thereof.
  • “Zwitterion” or “zwitterionic form” means a compound containing both positive and negatively charged functional groups.
  • cancer refers to a disease characterized by the rapid and uncontrolled growth of aberrant cells. Cancer cells can spread locally or through the bloodstream and lymphatic system to other parts of the body. Examples of various cancers are described herein and include but are not limited to colorectal, gastric, endometrial, prostate, adrenocortical, uterine, cervical, esophageal, breast, kidney, ovarian cancer and the like.
  • WRN inhibitor or “WRN helicase inhibitor” as used herein means a compound that inhibits Werner Syndrome RecQ DNA helicase (WRN).
  • WRN refers to the protein of Werner Syndrome RecQ DNA helicase.
  • WRN includes mutants, fragments, variants, isoforms, and homologs of full-length wild-type WRN.
  • the protein is encoded by the WRN gene (Entrez gene ID 7486; Ensembl ID ENSG00000165392). Exemplary WRN sequences are available at the Uniprot database under accession number Q 14191.
  • Disease or condition mediated by WRN includes a disease or condition, such as cancer, which is treated by WRN inhibition.
  • this may include cancers characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
  • MSI-H microsatellite instability-high
  • dMMR mismatch repair deficient
  • “Microsatellite unstable cancer,” “microsatellite instability-high cancer,” “microsatellite high cancer” and “MSI-high cancer,” “MSIhi” and “MSI-H” when used herein, are used interchangeably, and describe cancers that have a high number of alterations in the length of simple repetitive genomic sequences within microsatellites.
  • MSI-H or dMMR tumor status for patients can be performed using, e.g., polymerase chain reaction (PCR) tests for MSI-H status or immunohistochemistry (IHC) tests for dMMR.
  • PCR polymerase chain reaction
  • IHC immunohistochemistry
  • Microsatellite instability can be found in colorectal cancer, gastric cancer and endometrial cancer in particular, but also in adrenocortical, uterine, cervical, esophageal, breast, kidney, prostate and ovarian cancers.
  • microsatellite high cancers include uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma and ovarian serous cystadenocarcinoma.
  • a cancer that has “defective mismatch repair” (dMMR) or “dMMR character” includes cancer types associated with documented MLH1, PMS2, MSH2, MSH3, MSH6, MLH3, and PMS1 mutations or epigenetic silencing, microsatellite fragile sites, or other gene inactivation mechanisms, including but not limited to cancers of the lung, breast, kidney, large intestine, ovary, prostate, upper aerodigestive tract, stomach, endometrium, liver, pancreas, haematopoietic and lymphoid tissue, skin, thyroid, pleura, autonomic ganglia, central nervous system, soft tissue, pediatric rhabdoid sarcomas, melanomas and other cancers.
  • dMMR defective mismatch repair
  • a cell or cancer with “defective” mismatch repair has a significantly reduced (e.g., at least about 25%, 30%, 40%, 50%, 60%, 70%, 80% or 90% decrease) amount of mismatch repair. In some cases, a cell or cancer which is defective in mismatch repair will perform no mismatch repair.
  • composition refers to a compound of the invention, or a pharmaceutically acceptable salt thereof, together with at least one pharmaceutically acceptable carrier, in a form suitable for oral or parenteral administration.
  • the term “pharmaceutically acceptable carrier” refers to a substance useful in the preparation or use of a pharmaceutical composition and includes, for example, suitable diluents, solvents, dispersion media, surfactants, antioxidants, preservatives, isotonic agents, buffering agents, emulsifiers, absorption delaying agents, salts, drug stabilizers, binders, excipients, disintegration agents, lubricants, wetting agents, sweetening agents, flavoring agents, dyes, and combinations thereof, as would be known to those skilled in the art (see, for example, Remington The Science and Practice of Pharmacy, 22nd Ed. Pharmaceutical Press, 2013, pp. 1049-1070).
  • synthetic lethality and “synthetically lethal” are used to refer to reduced cell viability and/or a reduced rate of cell proliferation caused by a combination of mutations or approaches to cause loss of function (e.g., RNA interference or protein function inhibition) in two or more genes but not by the loss of function of only one of these genes.
  • loss of function e.g., RNA interference or protein function inhibition
  • a therapeutically effective amount of a compound of the present invention refers to an amount of the compound of the present invention that will elicit the biological or medical response of a subject, for example, reduction or inhibition of an enzyme or a protein activity, or ameliorate symptoms, alleviate conditions, slow or delay disease progression, or prevent a disease, etc.
  • the methods of the invention comprise administration of a therapeutically effective amount of a compound herein.
  • a therapeutically effective amount refers to the amount of the compound of the present invention that, when administered to a subject, is effective to (1) at least partially alleviate, prevent and/or ameliorate a condition, or a disorder or a disease (i) mediated by WRN, or (ii) associated with WRN activity, or (iii) characterized by activity (normal or abnormal) of WRN; or (2) reduce or inhibit the activity of WRN.
  • a therapeutically effective amount refers to the amount of the compound of the present invention that, when administered to a cell, or a tissue, or a non-cellular biological material, or a medium, is effective to at least partially reducing or inhibiting the activity of WRN, or reducing WRN protein levels.
  • the term “subject” refers to primates (e g., humans, male or female), dogs, rabbits, guinea pigs, pigs, rats and mice.
  • the subject is a primate, a rat or a mouse.
  • the subject is a human.
  • the term “inhibit,” “inhibition” or “inhibiting” refers to the reduction or suppression of a given condition, symptom, or disorder, or disease, or a significant decrease in the baseline activity of a biological activity or process.
  • the term “treat,” “treating” or “treatment” of any disease or disorder refers to alleviating or ameliorating the disease or disorder (i.e., slowing or arresting the development of the disease or at least one of the clinical symptoms thereof); or alleviating or ameliorating at least one physical parameter or biomarker associated with the disease or disorder, including those which may not be discernible to the patient.
  • the term “prevent,” “preventing” or “prevention” of any disease or disorder refers to the prophylactic treatment of the disease or disorder; or delaying the onset or progression of the disease or disorder.
  • a subject is “in need of’ a treatment if such subject would benefit biologically, medically or in quality of life from such treatment.
  • May j oin means j oins or does not j oin.
  • any asymmetric atom (e.g., carbon or the like) of the compound(s) of the present invention can be present in racemic or enantiomerically enriched, for example the (R)-, (S)- or (R, S)-configuration.
  • each asymmetric atom has at least 50 % enantiomeric excess, at least 60 % enantiomeric excess, at least 70 % enantiomeric excess, at least 80 % enantiomeric excess, at least 90 % enantiomeric excess, at least 95 % enantiomeric excess, or at least 99 % enantiomeric excess in the (R)- or (S)- configuration.
  • Substituents at atoms with unsaturated double bonds may, if possible, be present in cis-(Z)- or trans-(E)- form.
  • a compound of the present invention can be in the form of one of the possible stereoisomers, rotamers, atropisomers, tautomers or mixtures thereof, for example, as substantially pure geometric (cis or trans) stereoisomers, diastereomers, optical isomers (antipodes), racemates or mixtures thereof.
  • Any resulting mixtures of stereoisomers can be separated on the basis of the physicochemical differences of the constituents, into the pure or substantially pure geometric or optical isomers, diastereomers, racemates, for example, by chromatography and/or fractional crystallization.
  • Any resulting racemates of compounds of the present invention or of intermediates can be resolved into the optical antipodes by known methods, e.g., by separation of the diastereomeric salts thereof, obtained with an optically active acid or base, and liberating the optically active acidic or basic compound.
  • a basic moiety may thus be employed to resolve the compounds of the present invention into their optical antipodes, e.g., by fractional crystallization of a salt formed with an optically active acid, e.g., tartaric acid, dibenzoyl tartaric acid, diacetyl tartaric acid, di-O,O’-p-toluoyl tartaric acid, mandelic acid, malic acid or camphor- 10-sulfonic acid.
  • Racemic compounds of the present invention or racemic intermediates can also be resolved by chiral chromatography, e.g., high pressure liquid chromatography (HPLC) using a chiral adsorbent.
  • Compounds of the invention i.e. compounds of Formula I that contain groups capable of acting as donors and/or acceptors for hydrogen bonds may be capable of forming co-crystals with suitable co-crystal formers.
  • These co-crystals may be prepared from compounds of Formula I by known co-crystal forming procedures. Such procedures include grinding, heating, cosubliming, co-melting, or contacting in solution compounds of Formula I with the co-crystal former under crystallization conditions and isolating co-crystals thereby formed.
  • Suitable cocrystal formers include those described in WO 2004/078163. Hence the invention further provides co-crystals comprising a compound of Formula I.
  • the compounds of the present invention can also be obtained in the form of their hydrates, or include other solvents used for their crystallization.
  • solvates refers to a molecular complex of a compound of the present invention (including pharmaceutically acceptable salts thereof) with one or more solvent molecules.
  • solvent molecules are those commonly used in the pharmaceutical art, which are known to be innocuous to the recipient, e.g., water, ethanol, and the like.
  • hydrate refers to the complex where the solvent molecule is water.
  • composition or combination of the present invention may, for example, be in unit dosage of about 1-1000 mg of active ingredient(s) for a subject of about 50-70 kg-
  • “Combination” refers to either a fixed combination in one dosage unit form, or a combined administration where a compound of Formula I, or a pharmaceutically acceptable salt thereof, and a combination partner (e.g. another drug as explained below, also referred to as “therapeutic agent” or “co-agent”) may be administered independently at the same time or separately within time intervals, especially where these time intervals allow that the combination partners show a cooperative, e.g. synergistic effect.
  • the single components may be packaged in a kit or separately.
  • One or both of the components e.g., powders or liquids
  • co-administration or “combined administration” or the like as utilized herein are meant to encompass administration of the selected combination partner to a single subject in need thereof (e.g. a patient), and are intended to include treatment regimens in which the agents are not necessarily administered by the same route of administration or at the same time.
  • pharmaceutical combination as used herein means a product that results from the mixing or combining of more than one therapeutic agent and includes both fixed and non-fixed combinations of the therapeutic agents.
  • fixed combination means that the therapeutic agents, e.g. a compound of the present invention and a combination partner, are both administered to a patient simultaneously in the form of a single entity or dosage.
  • non-fixed combination means that the therapeutic agents, e.g. a compound of the present invention and a combination partner, are both administered to a patient as separate entities either simultaneously, concurrently or sequentially with no specific time limits, wherein such administration provides therapeutically effective levels of the two compounds in the body of the patient.
  • cocktail therapy e.g. the administration of three or more therapeutic agents.
  • the combinations described herein can include a compound of Formula I and one or more additional therapeutic agents, e.g., one or more anti-cancer agents, cytotoxic or cytostatic agents, hormone treatment, vaccines, and/or other immunotherapies.
  • the combination is further administered or used in combination with other therapeutic treatment modalities, including surgery, radiation, cryosurgery, and/or thermotherapy.
  • Such combination therapies may advantageously utilize lower dosages of the administered therapeutic agents, thus avoiding possible toxicities or complications associated with the treatment.
  • a combination comprising a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, as described herein, and one or more additional therapeutically active agents.
  • the additional therapeutic agent is, for example, a chemical compound, peptide, antibody, antibody fragment or nucleic acid, which is therapeutically active or enhances the therapeutic activity when administered to a patient in combination with a compound of the present disclosure.
  • an additional therapeutically active agent is:
  • Liposome injection (DaunoXome®), dexamethasone, docetaxel (Taxotere®), doxorubicin hydrochloride (Adriamycin®, Rubex®), etoposide (Vepesid®), fludarabine phosphate (Fludara®), 5-fluorouracil (Adrucil®, Efudex®), flutamide (Eulexin®), tezacitibine, Gemcitabine (difluorodeoxycitidine), hydroxyurea (Hydrea®), Idarubicin (Idamycin®), ifosfamide (IFEXO), irinotecan
  • the additional therapeutically active agent is:
  • a chemotherapy selected from anastrozole (Arimidex®), bicalutamide (Casodex®), bleomycin sulfate (Blenoxane®), busulfan (Myleran®), busulfan injection (Busulfex®), capecitabine (Xeloda®), N4-pentoxycarbonyl-5-deoxy-5-fluorocytidine, carboplatin (Parapl atin®), carmustine (BiCNU®), chlorambucil (Leukeran®), cisplatin (Platinol®), cladribine (Leustatin®), cyclophosphamide (Cytoxan® or Neosar®), cytarabine, cytosine arabinoside (Cytosar-U®), cytarabine liposome injection (DepoCyt®), dacarbazine (DTIC-Dome®), dactinomycin (Actinomycin D
  • a PD-1 inhibitor selected from spartalizumab (Novartis), nivolumab (Bristol-Myers Squibb), pembrolizumab (Merck & Co), pidilizumab (CureTech), MED 10680 (Medimmune), cemiplimab (REGN2810, Regeneron), dostarlimab (TSR-042, Tesaro), PF- 06801591 (Pfizer), tislelizumab (BGB-A317, Beigene), BGB-108 (Beigene), INCSHR1210 (Incyte), balstilimab (AGEN2035, Agenus), sintilimab (InnoVent), toripalimab (Shanghai Junshi Bioscience), camrelizumab (Jiangsu Hengrui Medicine Co.), AMP -224 (Amplimmune), penpulimab (Akeso Biopharma Inc), zimberelimab
  • the additional therapeutically active agent is an inhibitor of PD-1, e g., human PD-1.
  • the immunomodulator is an inhibitor of PD-L1, e g., human PD-L1.
  • the inhibitor of PD-1 or PD-L1 is an antibody molecule to PD-1 or PD-L1.
  • the additional therapeutically active agent is an anti- PD-1 antibody molecule.
  • the PD-1 inhibitor is an anti-PD-1 antibody molecule as described in US 2015/0210769, published on July 30, 2015, entitled “Antibody Molecules to PD- 1 and Uses Thereof.”
  • a combination of a compound of Formula I or a pharmaceutically acceptable salt thereof, and a chemotherapy, and a PD-1 inhibitor are selected from those described above.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor is administered at a flat dose of between about 100 mg to about 600 mg.
  • the PD-1 inhibitor is administered at a dose of between about 100 mg to about 500 mg.
  • the PD-1 inhibitor is administered at a dose of between about 100 mg to about 400 mg.
  • the PD-1 inhibitor is administered at a dose of between about 100 mg to about 300 mg.
  • the PD- 1 inhibitor is administered at a dose of between about 100 mg to about 200 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 300 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 300 mg to about 600 mg. In some embodiments, the PD- 1 inhibitor is administered at a dose of between about 300 mg to about 500 mg.
  • the PD-1 inhibitor is administered at a dose of between about 300 mg to about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 400 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 400 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 500 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 600 mg to about 700 mg. In some embodiments, the PD- 1 inhibitor is administered at a dose of between about 700 mg to about 800 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 800 mg to about 900 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 900 mg to about 1000 mg.
  • the PD-1 inhibitor (e.g., tislelizumab) is administered at a flat dose of about 100 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 200 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 300 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 700 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 800 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 900 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 1000 mg.
  • the PD-1 inhibitor is administered at a dose of about 200 mg. In some embodiments, the PD-1 inhibitor is administered at
  • the PD-1 inhibitor (e.g., tislelizumab) is administered once every ten weeks. In some embodiments, the PD-1 inhibitor is administered once every nine weeks. In some embodiments, the PD-1 inhibitor is administered once every eight weeks. In some embodiments, the PD-1 inhibitor is administered once every seven weeks. In some embodiments, the PD-1 inhibitor is administered once every six weeks. In some embodiments, the PD-1 inhibitor is administered once every five weeks. In some embodiments, the PD-1 inhibitor is administered once every four weeks. In some embodiments, the PD-1 inhibitor is administered once every three weeks. In some embodiments, the PD-1 inhibitor is administered once every two weeks. In some embodiments, the PD-1 inhibitor is administered once every week.
  • the PD-1 inhibitor is administered once every nine weeks.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor is administered intravenously.
  • the PD-1 inhibitor (e.g., tislelizumab) is administered over a period of about 20 minutes to 40 minutes (e.g., about 30 minutes). In some embodiments, the PD- 1 inhibitor is administered over a period of about 30 minutes. In some embodiments, the PD-1 inhibitor is administered over a period of about an hour. In some embodiments, the PD-1 inhibitor is administered over a period of about two hours. In some embodiments, the PD-1 inhibitor is administered over a period of about three hours. In some embodiments, the PD-1 inhibitor is administered over a period of about four hours. In some embodiments, the PD-1 inhibitor is administered over a period of about five hours. In some embodiments, the PD-1 inhibitor is administered over a period of about six hours.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor is administered over a period of about 20 minutes to 40 minutes (e.g., about 30 minutes). In some embodiments, the PD- 1 inhibitor is
  • the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose between about 300 mg to about 500 mg (e.g., about 400 mg), intravenously, once every four weeks. In some embodiments, the PD-1 inhibitor is administered at a dose between about 200 mg to about 400 mg (e.g., about 300 mg), intravenously, once every three weeks. In some embodiments, tislelizumab is administered at a dose of 400 mg, once every four weeks. In some embodiments, tislelizumab is administered at a dose of 300 mg, once every three weeks.
  • the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose between about 300 mg to about 500 mg (e.g., about 400 mg), intravenously, over a period of about 20 minutes to about 40 minutes (e.g., about 30 minutes), once every two weeks.
  • the PD-1 inhibitor is administered at a dose between about 200 mg to about 400 mg (e g., about 300 mg), intravenously, over a period of about 20 minutes to about 40 minutes (e.g., about 30 minutes), once every three weeks.
  • the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose of about 100 mg per week. For example, if a 10-week dose is given to a patient, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 1000 mg. If a 9-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 900 mg. If an 8-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 800 mg.
  • a 10-week dose is given to a patient, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 1000 mg. If a 9-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 900 mg. If an 8-week dose is given, then the PD-1 inhibitor (e.g
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor can be given at 700 mg.
  • a 6-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 600 mg.
  • a 5-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 500 mg.
  • a 4-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 400 mg.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor can be given at 300 mg.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor can be given at 200 mg.
  • the PD-1 inhibitor e.g., tislelizumab
  • the PD-1 inhibitor can be given at 100 mg.
  • an anti-PD-1 antibody such as tislelizumab
  • it can be administered at a dose of 200 mg as an intravenous infusion, once every three weeks.
  • tislelizumab can be administered at a dose of 300 mg as an intravenous infusion, once every four weeks.
  • an anti-PD-1 antibody such as tislelizumab
  • it can be administered at a dose of 300 mg as an intravenous infusion, once every three weeks.
  • tislelizumab can be administered at a dose of 400 mg as an intravenous infusion, once every four weeks.
  • the invention provides a product comprising a compound of the present invention and at least one other therapeutic agent as a combined preparation for simultaneous, separate or sequential use in therapy.
  • the therapy is the treatment of a disease or condition mediated by WRN.
  • Products provided as a combined preparation include a composition comprising the compound of Formula I and the other therapeutic agent(s) together in the same pharmaceutical composition, or the compound of the present invention and the other therapeutic agent(s) in separate form, e.g. in the form of a kit.
  • the invention provides a kit comprising two or more separate pharmaceutical compositions, at least one of which contains a compound of the present invention.
  • the kit comprises means for separately retaining said compositions, such as a container, divided bottle, or divided foil packet.
  • a container, divided bottle, or divided foil packet An example of such a kit is a blister pack, as typically used for the packaging of tablets, capsules and the like.
  • the kit of the invention may be used for administering different dosage forms, for example, oral and parenteral, for administering the separate compositions at different dosage intervals, or for titrating the separate compositions against one another.
  • the kit of the invention typically comprises directions for administration.
  • the compound of the present invention and the other therapeutic agent may be manufactured and/or formulated by the same or different manufacturers. Moreover, the compound of the present invention and the other therapeutic may be brought together into a combination therapy: (i) prior to release of the combination product to physicians (e g. in the case of a kit comprising the compound of the present invention and the other therapeutic agent); (ii) by the physician themselves (or under the guidance of the physician) shortly before administration; (iii) in the patient themselves, e.g. during sequential administration of the compound of the present invention and the other therapeutic agent.
  • the invention provides the use of a compound of the present invention for treating a disease or condition mediated by WRN, wherein the medicament is prepared for administration with another therapeutic agent.
  • the invention also provides the use of another therapeutic agent for treating a disease or condition mediated by WRN, wherein the medicament is administered with a compound of the present invention.
  • the invention also provides a compound of the present invention for use in treating a disease or condition mediated by WRN, wherein the compound of the present invention is prepared for administration with another therapeutic agent.
  • the invention also provides another therapeutic agent for use in treating a disease or condition mediated by WRN, wherein the other therapeutic agent is prepared for administration with a compound of the present invention.
  • the invention also provides a compound of the present invention for use in treating a disease or condition mediated by WRN, wherein the compound of the present invention is administered with another therapeutic agent.
  • the invention also provides another therapeutic agent for use in a method of treating a disease or condition mediated by WRN, wherein the other therapeutic agent is administered with a compound of the present invention.
  • the invention also provides the use of a compound of the present invention for treating a disease or condition mediated by WRN, wherein the patient has previously (e.g. within 24 hours) been treated with another therapeutic agent.
  • the invention also provides the use of another therapeutic agent for treating a disease or condition mediated by WRN, wherein the patient has previously (e.g. within 24 hours) been treated with compound of the present invention.
  • the appropriate halothiazole may undergo nucleophilic aromatic substitution with a protected amine as shown in Step 1.
  • Bicyclic heterocycle F is produced via intramolecular condensation reaction of E.
  • Protecting group chemistry produces G then the R 2 substituent addition to the compound is initiated by reacting G with tert-butyl 2-bromoacetate to produce Intermediate-7.
  • R 1 is then attached using a boronic acid thereof by cross-coupling Intermediate-7 with said boronic acid to produce H.
  • Deprotections followed by amide forming reactions may be used to finish adding substituents R 4 and R 2 to the compound as shown in Steps 9-13, to arrive at compounds of the disclosure such as 1-2.
  • ISfeSCU sodium sulfate
  • EDCI N-(3-dimethylaminopropyl)-N’ -ethylcarbodiimide hydrochloride
  • LCMS Liquid chromatography–mass spectrometry
  • HPLC High-performance liquid chromatography
  • NH4Cl ammonium chloride
  • K 3 PO 4 tripotassium phosphate
  • TFA trifluoroacetic acid
  • NBS N-bromosuccinimide
  • DIEA N,N-diisopropylethylamine
  • TsOH 4-methylbenzenesulfonic acid
  • DMSO-d 6 deuterated dimethyl sulfoxide
  • NMP N-methyl-2-pyrrolidone
  • DBU 1,8-diazabicyclo[5.4.0]und
  • Step 1 Synthesis of 4-chloro-5-methoxy-6-methylpyrimidine [00320] To a mixture of 4,6-dichloro-5-methoxypyrimidine (30.00 g, 167.6 mmol, 1.0 eq) in THF (300 mL) was added a 3 M solution of MeMgBr (61.45 mL, 184.4 mmol, 1.1 eq) in diethyl ether dropwise at 0 °C and then the mixture was stirred at 5 °C for 1 h. The resulting mixture was poured into H 2 O (200 mL) and extracted with EtOAc (100 mL*3).
  • Step 2 Synthesis of methyl 5-methoxy-6-methylpyrimidine-4-carboxylate [00321] To a mixture of 4-chloro-5-methoxy-6-methylpyrimidine (22.00 g, 138.7 mmol, 1.0 eq) in MeOH (250 mL) was added Pd(dppf)Cl 2 -CH 2 Cl 2 (6.80 g, 8.32 mmol, 0.06 eq) and TEA (28.1 g, 278 mmol, 2.0 eq). The reaction was purged with CO (50 psi) and stirred at 50 °C overnight. The resulting mixture was filtered, and the filtrate was concentrated under reduced pressure.
  • Step 3 Synthesis of 5-hydroxy-6-methylpyrimidine-4-carboxylic acid [00322] A mixture of methyl 5-methoxy-6-methylpyrimidine-4-carboxylate (16.00 g, 87.83 mmol, 1.0 eq) in HBr solution (aq.) (68.5 mL, 68%) was stirred at 50 °C overnight. Then HI solution (aq.) (67.2 mL, 56%) was added and stirred at 50 °C for 6 h.
  • Step 1 Synthesis of 2-methoxypyridine-4-carbothioamide
  • 2-methoxypyridine-4-carbothioamide To a solution of 2-methoxyisonicotinonitrile (15.10 g, 112.6 mmol, 1.0 eq) in DMF (400 mL) was added MgCl2 (10.72 g, 112.6 mmol, 1.0 eq) and the mixture was stirred at room temperature for 15 mins. NaHS (25.02 g, 337.7 mmol, 3.0 eq) was added to the mixture and the resulting mixture was stirred at room temperature for 14 h. The reaction mixture was poured into water (1.5 L) and extracted with EtOAc (1 L * 3).
  • Step 2 Synthesis of ethyl 4-hydroxy-2-(2-methoxypyridin-4-yl)thiazole-5-carboxylate [00327] To a solution of 2-methoxypyridine-4-carbothioamide (20.00 g, 118.9 mmol, 1.0 eq) in EtOH (400 mL) was added pyridine (28.21 g, 356.7 mmol, 3.0 eq) and diethyl 2-bromomalonate (28.42 g, 118.9 mmol, 1.0 eq), and then the mixture was stirred at 80 °C for 1 h. The reaction mixture was cooled to room temperature and then filtered.
  • Step 3 Synthesis of ethyl 2-(2-methoxypyridin-4-yl)-4- (((trifluoromethyl)sulfonyl)oxy)thiazole-5-carboxylate [00330] To a solution of ethyl 4-hydroxy-2-(2-methoxypyridin-4-yl)thiazole-5-carboxylate (16.62 g, 59.28 mmol, 1.0 eq) and pyridine (14.07 g, 177.8 mmol, 3.0 eq) in DCM (100 mL) was added Tf2O (25.09 g, 88.92 mmol, 1.5 eq) at 0 °C.
  • Step 4 Synthesis of ethyl 4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazole-5-carboxylate
  • ethyl 2-(2-methoxypyridin-4-yl)-4- (((trifluoromethyl)sulfonyl)oxy)thiazole-5-carboxylate 25.00 g, 60.63 mmol, 1.0 eq
  • bis(4- methoxybenzyl)amine 23.40 g, 90.94 mmol, 1.5 eq
  • 1,4-dioxane 400 mL
  • DIEA 23.51 g, 181.9 mmol, 3.0 eq
  • Step 5 Synthesis of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)pentane-1,3-dione
  • ethyl 4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazole-5-carboxylate 500 mg, 962 ⁇ mol, 1.0 eq
  • butan-2-one (278 mg, 3.85 mmol, 4.0 eq) in 2-methyltetrahydrofuran (4 mL) was added LiHMDS (1 M in THF, 3.85 mL, 4.0 eq) at room temperature and then the mixture was stirred at 80°C for 2 h.
  • Step 6 Synthesis of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)-2-bromopentane-1,3-dione
  • 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4-yl)thiazol- 5-yl)pentane-1,3-dione (2.47 g, 4.53 mmol, 1.0 eq) in DCM (25 mL) was added TsOH-H2O (78 mg, 453 ⁇ mol, 0.1 eq) and NBS (806 mg, 4.53 mmol, 1.0 eq) and then the mixture was stirred at room temperature for 1 h.
  • Step 2 Synthesis of 5-ethyl-2-(2-methoxypyridin-4-yl)-6-(piperazin-1-yl)thiazolo[4,5- b]pyridin-7(4H)-one trifluoroacetate
  • a solution of tert-butyl 4-(1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)-1,3-dioxopentan-2-yl)piperazine-1-carboxylate (1.00 g, 1.37 mmol, 1.0 eq) in TFA (10 mL) was stirred at 70 °C for 4 h, and then the reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification.
  • Step 1 Synthesis of tert-butyl 4-(4-(2-((2-chloro-4-(trifluoromethyl)phenyl)amino)-2- oxoethyl)-5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[4,5-b]pyridin-6- yl)piperazine-1-carboxylate [00351] To a solution of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7- dihydrothiazolo[4,5-b]pyridin-6-yl)piperazine-1-carboxylate (Intermediate-9) (285 mg, 604 ⁇ mol, 1.0 eq) in DMF (10 mL) was added DIEA (234 mg, 1.81 mmol, 3.0 eq) and N-(2-chloro
  • Step 2 Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxo-6-(piperazin-1-yl)thiazolo[4,5-b]pyridin-4(7H)-yl)acetamide hydrochloride [00354] To a solution of tert-butyl 4-(4-(2-((2-chloro-4-(trifluoromethyl)phenyl)amino)-2- oxoethyl)-5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[4,5-b]pyridin-6- yl)piperazine-1-carboxylate (180 mg, 255 ⁇ mol, 1.0 eq) in 1,4-dioxane (2.7 mL) was added a solution of
  • Step 2 Synthesis of 2-(2-bromo-6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid
  • Step 3 Synthesis of tert-butyl 4-(2-bromo-4-(2-((2-chloro-4- (trifluoromethyl)phenyl)amino)-2-oxoethyl)-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6- yl)piperazine-1-carboxylate [00364] To a solution of 2-(2-bromo-6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid (2.50 g, 4.99 mmol, 1.0 eq) and 2-chloro-4- (trifluoromethyl)aniline (1.02 g, 5.24 mmol, 1.05 eq) in pyridine (25 mL) and DCM (25 mL)
  • Step 4 Synthesis of 2-(2-bromo-5-ethyl-7-oxo-6-(piperazin-1-yl)thiazolo[5,4- b]pyridin-4(7H)-yl)-N-(2-chloro-4-(trifluoromethyl)phenyl)acetamide trifluoroacetate [00367] To a solution of tert-butyl 4-(2-bromo-4-(2-((2-chloro-4- (trifluoromethyl)phenyl)amino)-2-oxoethyl)-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6- yl)piperazine-1-carboxylate (50 mg, 74 ⁇ mol, 1.0 eq) in DCM (1.5 mL) was added TFA (0.5 mL), and the resulting mixture was stirred at room temperature for 0.5 h.
  • the resulting mixture was diluted with water (20 mL).
  • the resulting mixture was extracted with EtOAc (3 * 20 mL).
  • the combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure to afford the title compound, which was used into the next step directly without purification.
  • Step 1 Synthesis of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4-(2-oxo- 2-((3-(trifluoromethyl)bicyclo[l .1. l]pentan-l-yl)amino)ethyl)-4,7-dihydrothiazolo[4,5- b]pyridin-6-yl)piperazine- 1 -carboxylate
  • Bicine buffer solution was purchased from Alfa Aesar (Tewksbury, MA) and compound NSC-617145 was purchased from Tocris (Minneapolis, MN).
  • DNA duplex was synthesized at BGI (Shenzhen, China) and was composed of strand 1 with the sequence 5’-GCACTGGCCGTCGTTTTACGGTCG-3’ (SEQ ID NO.: 1) and strand 2 with the sequence 5’-TCCAAGTAAAACGACGGCCAGTGC-3’ (SEQ ID NO.: 2). DNA strands were annealed by heating to 95 o C for 5 minutes followed by slow cooling to room temperature.
  • DMSO concentration was 1% and the reference compound concentration (NSC-617145) used for the minimal signal control was 20 ⁇ M.
  • the reaction was stopped by the addition of the ADP-Glo Kit components (Promega; Madison, WI) as directed and the relative luminescence units (RLU) were read on an Envision 2104 (Perkin Elmer; Waltham, MA).
  • WRN protein production [00392] Molecular Biology and virus production. The DNA encoding human Werner helicase (Uniprot Q14191, amino acids 517-1235 with L1074F point mutation) was generated with codon- optimization for E.coli expression and subcloned into the pFastBac vector with a TEV cleavable 8xHis tag (WRN-BV08).
  • Sf9 cells grown in SF900II media were infected with 1.200 WRN-BV08 P2 virus and incubated for protein expression for 72 h at 27°C.
  • the WRN protein was purified using the following protocol.
  • the cell pellets were thawed and resuspended in buffer A (50 mM Tris, pH 7.5, 500 mM NaCl, 1 mM TCEP, 10% Glycerol) supplemented with 0.5% CHAPS, ImM PMSF, Ipg/ml Leupeptin, Ipg/ml Pepstatin, and the Pierce Universal Nuclease and cocktail tablet.
  • Untagged WRN protein was eluted from the column with buffer A supplemented with 20 mM imidazole, dialyzed overnight into buffer B (50 mM Tris, pH 7.5, 1 mM TCEP, 10% Glycerol) supplemented with 150 mM NaCl and loaded onto a Heparin column. Proteins were eluted with a step gradient of buffer B supplemented with 150 mM, 200 mM, 300 mM and 500 mM NaCl.
  • WRN containing fractions were pooled and concentrated prior to loading on to size exclusion chromatography using a HiLoad 16/600 Superdex TM 200 pg column (GE Healthcare) in buffer C (20 mM HEPES, pH 7.5, 250 mM NaCl, 0.25 mM TCEP, 2.5% Glycerol).
  • Example 3 Method for determining effect on p21 induction in cells.
  • the colon carcinoma cell line HCT116 was obtained from ATCC and cultured in growth medium consisting of Mccoy's 5A Medium (Gibco 16600108) supplemented with 10% FBS (Transgene FS201-02) and 100 units/mL penicillin-streptomycin (Gibco 15140122) and maintained at 37 °C under 5% CO2.
  • 2,000 cells in 30pL of culture media were plated per well to Poly-D-Lysine 384 Well Black Clear Plates (Biocoat 356663) and incubated overnight at 37 °C under 5% CO2.
  • compounds were serially diluted in DMSO for a total of 11 test concentrations.
  • the typical starting concentration of cpds was lOuM with 2-fold dilutions.
  • 150nL of diluted compound was added in duplicate to the assay plate, using an Echo 655 (Labcyte).
  • the plate was centrifuged at 500 RPM for 1 min and then incubated at 37 °C under 5% CO2 for 24h. After 24h, medium was removed, and cells were fixed by adding 40pL of 4% paraformaldehyde solution to each well and incubated for 20 min at room temperature.
  • the plate was then washed 4 times with lOOpL per well of wash buffer (PBS with 0.1% Tween- 20) using a microplate washer.
  • Each plate contained DMSO control (low control) and an internal reference WRN inhibitor (high control) respectively.
  • WRN inhibitor high control
  • the 800nm/700nm ratio was calculated for each well to give fold p21 induction and then percent activation for each compound well was calculated as follows ((100 x (ratio cpd well-ratio low control)/(ratio high control - ratio low control)).
  • EC50 values for each compound was generated after non-linear regression curve fitting using commercially available software.

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Abstract

The present disclosure is directed to thiazolopyridin-7(4h)-one based compounds, including compounds of Formula (I) and pharmaceutically acceptable salts thereof, and compositions thereof, as well as methods of treatment of cancers such as those involving WRN protein.

Description

THIAZOLOPYRIDIN-7(4H)-ONE WRN INHIBITORS
RELATED APPLICATIONS
[0001] This application claims priority to and the benefit of U.S. Provisional Application No. 63/507,932, filed June 13, 2023; U.S. Provisional Application No. 63/519,756, filed August 15, 2023; and U.S. Provisional Application No. 63/613,655, filed December 21, 2023; the contents of each of which are hereby incorporated by reference.
FIELD OF INVENTION
[0002] The invention provides bicyclic compounds and compositions, the use thereof and methods using the compounds, for inhibiting Werner Syndrome RecQ DNA helicase (WRN) and methods of treating disease using said compounds, in particular the use in treating cancer, and in particular the treatment of cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), including colorectal, gastric and endometrial cancer. The invention also provides the use of said compounds as research chemicals, intermediate compounds, combinations, processes and formulations.
SEQUENCE LISTING
[0003] This application contains a Sequence Listing which has been submitted in .xml format via EFS and is hereby incorporated by reference. The ST.26 copy, created on March 30, 2023, is named 407274-79WRP3_ST26.xml and is 8,751 bytes in size.
BACKGROUND
[0004] Loss of DNA mismatch repair is a common initiating event in cancer development occurring in 10-30% of colorectal, endometrial, ovarian and gastric cancers (Aaltonen, L. A. et al. Clues to the pathogenesis of familial colorectal cancer, Science 260, 812-816 (1993), Bonneville R et al., Landscape of Microsatellite Instability Across 39 Cancer Types. JCO Precis Oncol. 1 : PO.17.00073 (2017)). Cancers that are deficient in mismatch repair (dMMR) have a high mutational burden, and frequent deletion and insertion events in repetitive DNA tracts, a phenotype known as microsatellite instability (MSI). While progress has been made in the treatment of microsatellite instability high (MSI-H) cancers, and the demonstration that pembrolizumab (anti- PD1) treatment led to significantly longer progression-free survival than chemotherapy when received as first-line therapy for MSI-H-dMMR metastatic colorectal cancer (CRC) which resulted in the recent approval of pembrolizumab as first-line treatment of these cancers, there is still a significant unmet medical need in CRC and other MSI-H indications (Andre T., et al. Pembrolizumab in Microsatellite-Instability-High Advanced Colorectal Cancer. N Engl J Med 383(23):22072218 (2020)). Several large-scale functional genomics screens across large panels of cell lines, including Novartis with 398 cell lines from the Cancer Cell Line Encyclopedia (CCLE) (McDonald E.R. et al., Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening. Cell 170(3):577-592 (2017)), have identified the Werner Syndrome RecQ helicase (WRN) as being selectively required for the survival of cell lines with defective mismatch repair that have become MSI-H (Behan, F. M. et al. Prioritization of cancer therapeutic targets using CRISPR — Cas9 screens. Nature 568, 511-516 (2019), Chan, E. M. et al. WRN helicase is a synthetic lethal target in microsatellite unstable cancers. Nature 568, 551-556 (2019). Kategaya, L., Perumal, S. K., Hager, J. H. & Belmont, L. D. Werner syndrome helicase is required for the survival of cancer cells with microsatellite instability. iScience 13, 488-497 (2019), Lieb, S. et al. Werner syndrome helicase is a selective vulnerability of microsatellite instability-high tumor cells. eLife 8, e43333 (2019)). WRN is synthetically lethal with MSI cancers. Depletion of WRN leads to anti-proliferative effects and results in activation of multiple DNA damage signaling markers, induction of cell cycle arrest and apoptosis in MSI-H cancer models but not cancer cells with an intact MMR pathway (otherwise known as microsatellite stable or MSS). The anti-proliferative effects of WRN depletion could not be rescued with a helicase deficient WRN construct, demonstrating that helicase activity of WRN is required for MSI-H viability. These findings indicate that WRN helicase provides a DNA repair and maintenance function that is essential for cell survival in MSI cancers. Recently, the mechanism of WRN dependence has been elucidated. It has been shown that dinucleotide TA repeats are selectively unstable in MSI cells and undergo large scale expansions. These expanded TA repeats form secondary DNA structures that require the WRN helicase for unwinding (van Wietmarschen, N. et al. Repeat expansions confer WRN dependence in microsatellite-unstable cancers. Nature 586, 292-298, 2020). In the absence of WRN (or upon WRN helicase inhibition), expanded TA repeats in MSI cells are subject to nuclease cleavage and chromosome breakage. Thus, inhibiting the WRN helicase is an attractive strategy for the treatment of MSI-H cancers.
SUMMARY
[0005] There remains a need for new treatments and therapies for the treatment of cancer, and in particular cancers characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), including colorectal, gastric or endometrial cancer. The invention provides compounds, pharmaceutically acceptable salts thereof, pharmaceutical compositions thereof and combinations thereof, said compounds being inhibitors of Werner Syndrome RecQ DNA Helicase (WRN). The invention further provides methods of treating, preventing, or ameliorating a disease or condition, comprising administering to a subject in need thereof an effective amount of a WRN inhibitor. The invention also provides compounds, pharmaceutically acceptable salts thereof, pharmaceutical compositions thereof and combinations thereof, said compounds being useful for the treatment of cancer, in particular cancers characterized as microsatellite instability-high (MSI- H) or mismatch repair deficient (dMMR). Also provided are compounds that bind to, and/or inhibit WRN, and are therefore useful as research chemicals, e.g., as a chemical probe, and as tool compounds. Various embodiments of the invention are described herein.
[0006] In one aspect, the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof:
Figure imgf000004_0001
wherein R1, R2, R3, R4, Y, Z, L and Ring A are as described and defined herein.
[0007] In another aspect, the invention provides a pharmaceutical composition comprising a compound of Formula I of the present invention and one or more pharmaceutically acceptable carriers. [0008] In another aspect, the invention provides a combination, in particular a pharmaceutical combination, comprising a compound of Formula I of the present invention and one or more therapeutically active agents.
[0009] In another aspect, the invention provides a compound of Formula I of the present invention for use as a medicament, in particular for the treatment of a disorder or disease which can be treated by WRN inhibition.
[0010] In another aspect, the invention provides a compound of Formula I of the present invention for use in the treatment of cancer, particularly wherein the cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
[0011] In another aspect, the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I of the present invention.
[0012] In another aspect, the invention provides a method of treating cancer in a subject, more particularly wherein the cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), comprising administering to the subject a therapeutically effective amount of a compound of Formula I of the present invention.
[0013] In another aspect, the invention provides the use of a compound of Formula I of the present invention in the manufacture of a medicament for the treatment of a disorder or disease which can be treated by WRN inhibition.
[0014] In another aspect, the invention provides a compound of Formula I of the present invention for use as a research chemical, for example as a chemical probe or as a tool compound.
[0015] In another aspect, the invention provides a solid form, process or intermediate as described herein.
DETAILED DESCRIPTION
1. General Description of Certain Embodiments o f the Invention:
[0016] In one aspect, the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof:
Figure imgf000006_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein - denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is
N;
L is a linker selected from
Figure imgf000006_0002
R1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, Ci-Cealkyl, haloCi-Cealkyl, Cs-Cecycloalkyl, Ci-Cealkoxy, and C3- Cscycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is C(RB)2C(O)N(R)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl, or pyridyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5, two substituents on adjacent atoms of the phenyl or pyridyl together with their intervening atoms form a 4-7-membered carbocyclyl fused to the phenyl or pyridyl, and two substituents on adjacent atoms of the phenyl or pyridyl together with their intervening atoms form a 4-7-membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7-membered carbocyclyl or 4-7-membered heterocyclyl is optionally substituted with 0-5 independently selected halogen; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2 or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted C1-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur). [0017] In another aspect, the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I, or a pharmaceutically acceptable salt thereof, of the present invention. [0018] In another aspect, the disclosure provides a compound of Formula I’, or a pharmaceutically acceptable salt thereof: I’ R4 is selected from one of a), b),
Figure imgf000010_0001
a) R4 is a Ring B that is selected from the group consisting of: whe
Figure imgf000010_0002
p y g p g ula I’; and wherein: any substituents that are present on Ring B selected from R4A, R4B, R4C, R4D, R4E, and RF are each independently selected from hydrogen; -OH, halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4B and R4C, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4B, R4E and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E is halogen or -OH, and R4A, R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4F and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4B and R4C are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3; or b) R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy; or c) R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy. [0019] In another aspect, the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I’, or a pharmaceutically acceptable salt thereof, of the present invention. [0020] In one aspect, the disclosure provides a compound of Formula I’’, or a pharmaceutically acceptable salt thereof: I’’ wherein Ring A represents:
Figure imgf000013_0001
a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; L is a linker selected from ; R1 is selected from group
Figure imgf000013_0002
a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11 , -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is selected from C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2N(R)C(O) N(R)R2A, and C(RB)2C(RB)2N(R)C(O)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5, two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7-membered carbocyclyl fused to the phenyl or pyridyl, and two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7-membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7-membered carbocyclyl or 4-7-membered heterocyclyl is substituted with 0-5 independently selected halogen, and wherein 2 substituents on the same atom of said saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring form a cyclic group selected from: ^ an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclyl, and ^ an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted C1-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[0021] In another aspect, the invention provides a method of treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of a compound of Formula I”, or a pharmaceutically acceptable salt thereof, of the present invention.
2. Compounds and Definitions:
[0022] Compounds of the present invention include those described generally herein, and are further illustrated by the classes, subclasses, and species disclosed herein. As used herein, the following definitions shall apply unless otherwise indicated. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75th Ed. Additionally, general principles of organic chemistry are described in “Organic Chemistry,” Thomas Sorrell, University Science Books, Sausalito: 1999, and “March’s Advanced Organic Chemistry,” 5th Ed., Ed.: Smith, M.B. and March, J., John Wiley & Sons, New York: 2001 .
[0023] Compound structures shown throughout the present specification and in the examples or claims contain designations at certain stereocenters which indicate the following: “orl” and is intended to cover stereochemically pure compounds wherein the stereochemistry at the stereocenter marked with “orl” is either the stereochemistry shown in the diagram or wherein the marked stereocenter has a configuration opposite to what is shown in the diagram. In structures with stereocenters with the same label such as “orl” the relative stereochemistry between two stereocenters with said label is as drawn. Stereocenters marked with “abs” intend to cover material wherein the marked stereocenter is of the stereochemistry shown in the diagram. Stereocenters marked with “&1” or “andl” indicate that the compound material has a mixture of R and S- configured stereoisomers with respect to the marked stereocenter and is in the same relative configuration to each other if they share the same label such as “andl” or “&1”.
[0024] The term “aliphatic” or “aliphatic group,” as used herein, means a straight-chain (i.e., unbranched) or branched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation, or a monocyclic hydrocarbon or bicyclic hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic (also referred to herein as “carbocycle,” “cycloaliphatic” or “cycloalkyl”), that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-6 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-5 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-4 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-3 aliphatic carbon atoms, and in yet other embodiments, aliphatic groups contain 1-2 aliphatic carbon atoms. In some embodiments, “cycloaliphatic” (or “carbocycle” or “cycloalkyl”) refers to a monocyclic C3-C6 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule. Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl groups and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.
[0025] As used herein, the term “bridged bicyclic” refers to any bicyclic ring system, i.e., carbocyclic or heterocyclic, saturated or partially unsaturated, having at least one bridge. As defined by IUPAC, a “bridge” is an unbranched chain of atoms or an atom or a valence bond connecting two bridgeheads, where a “bridgehead” is any skeletal atom of the ring system which is bonded to three or more skeletal atoms (excluding hydrogen). In some embodiments, a bridged bicyclic group has 5-12 ring members and 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur unless otherwise specified, a bridged bicyclic group is optionally substituted with one or more substituents as set forth for aliphatic groups. Additionally or alternatively, any substitutable nitrogen of abridged bicyclic group is optionally substituted. The term “alkyl” refers to a C1-12 straight or branched saturated aliphatic group. In certain instances, alkyl refers to a Cns straight or branched saturated aliphatic group or a C1-6 straight or branched saturated aliphatic group. The term “lower alkyl” refers to a C1.4 straight or branched alkyl group. [0026] Exemplary lower alkyl groups are methyl (-CH3), ethyl (-CH2CH3), propyl, isopropyl (also referred to interchangeably herein as 2-propyl, iPr, ‘Pr and i-Pr), butyl, isobutyl (also referred to interchangeably herein as 2-butyl, iBu, ‘Bu and i-Bu) and tert-butyl (also referred to interchangeably herein as 2-methyl-2 -butyl, tBu, ’Bu and t-Bu).
[0027] The term “alkenyl” refers to a C2-12 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond. In certain instances, alkenyl refers to a C2-8 or a C2-6 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond. The term “lower alkenyl” refers to a C2-4 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon double bond. Alkenyl groups include both cis (Z) and trans (E) regioisomers. Exemplary lower alkenyl groups are vinyl, allyl, 2-propenyl, and butenyl isomers (-CH2CH2CH-CH2, - CH2CH=CHCH3 and -CH=CHCH2CH3).
[0028] The term “alkynyl” refers to a C2-12 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond. In certain instances, alkynyl refers to a C2-8 or a C2-6 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond. The term “lower alkynyl” refers to a C2-4 straight or branched partially unsaturated aliphatic group comprising at least one unsaturated carbon carbon triple bond. Exemplary lower alkynyl groups are ethynyl, 1-propynyl, 2-propynyl, 1- butynyl, 2-butynyl, and 3-butynyl.
[0029] The term “haloalkyl” refers to a straight or branched alkyl group that is substituted with one or more halogen atoms. The term “lower haloalkyl” refers to a C1-4 straight or branched alkyl group that is substituted with one or more halogen atoms.
[0030] The term “heteroatom” means one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, or silicon; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2/f-pyrrolyl), NH (as in pyrrolidinyl) or NR+ (as in N-substituted pyrrolidinyl).
[0031] The term “unsaturated,” as used herein, means that a moiety has one or more units of unsaturation. [0032] As used herein, the term “bivalent C1-8 (or C1-6 i.e., C1-C6) saturated or unsaturated, straight or branched, hydrocarbon chain,” refers to bivalent alkylene, alkenylene, and alkynylene chains that are straight or branched as defined herein. [0033] As used herein, the term “bivalent,” to describe a cyclic (and noncyclic) group refers to, for example, bivalent carbocyclylene, phenylene, heterocyclylene, and heteroarylene that are bivalent moieties of carbocycles, phenyls, heterocycles, and heteroaryls described herein. Non- limiting examples include . [
Figure imgf000020_0001
at is bivalent as described above (i.e., attached at two different points to the rest of the compound). Non-limiting examples include cyclopropylene, cyclobutylene, cyclopentylene, or cyclohexylene as shown below.
Figure imgf000020_0002
[0035] A carbocyclylene may be saturated as in the examples shown above or partially unsaturated as in the examples shown below.
Figure imgf000021_0001
[0036] A carbocyclylene may be multi-cyclic, for example, bicyclic or tricyclic. Such multi- cyclic carbocyclylene systems may be saturated or partially unsaturated (while one ring of the bicyclic system may be aromatic it is to be understood that multi-cyclic ring systems that are not in their entirety aromatic may also fall under the definition of carbocyclylene). The rings may form bridged, fused, or spiro systems. Non-limiting examples are shown below.
Figure imgf000021_0002
spirocyclic bicyclic carbocyclylenes
Figure imgf000021_0003
fused bicyclic carbocyclylenes bridged bicyclic carbocyclylenes
[0037] “Heterocyclylene” as used herein refers to a heterocyclic or heterocyclyl moiety that is bivalent as described above (i.e., attached at two different points to the rest of the compound) and may also be saturated or partially unsaturated. Non-limiting examples include those shown below. Heterocyclylene is understood to include bicyclic heterocyclylene systems. Non-limiting examples of bicyclic heterocyclylene moieties are also shown below and said bicyclic systems may be spirocyclic, fused, or bridged and may be saturated or partially unsaturated.
Figure imgf000022_0001
spirocyclic bicyclic heterocyclylenes
Figure imgf000022_0002
fused bicyclic heterocyclylenes bridged bicyclic heterocyclylenes
[0038] “Phenylene” as used herein refers to a phenyl moiety that is bivalent as described above
(i.e., attached at two different points to the rest of the compound). Examples are shown below.
Figure imgf000022_0003
[0039] “Arylene” as used herein refers to an mono or multi-cyclic aryl (i.e., phenyl or a multi- cyclic aryl) moiety that is bivalent as described above (i.e., attached at two different points to the rest of the compound), wherein the arylene group contains no heteroatoms. Examples are shown below.
Figure imgf000022_0004
[0040] “Heteroarylene,” as used herein refers to a mono or multi-cyclic aryl ring system that contains at least one heteroatom wherein the ring system is bivalent as described above (i.e., attached at two different points to the rest of the compound). Examples are shown below.
Figure imgf000023_0001
[0041] The term “alkylene” refers to a bivalent alkyl group. An “alkylene chain” is a polymethylene group, i.e., -(CH2)n- wherein n is a positive integer, preferably from 1 to 6, from 1 to 4, from 1 to 3, from 1 to 2, or from 2 to 3. A substituted alkylene chain is a polymethylene group in which one or more methylene hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
[0042] “Carbocyclyl (or heterocyclyl, aryl, phenyl, or heteroaryl) fused to” another phenyl, aryl, heteroaryl, carbocyclyl, or heterocyclyl, for example, a “phenyl or pyridyl” as used herein, may be referred to as “partially unsaturated” without said “carbocyclyl (or heterocyclyl, aryl, phenyl, or heteroaryl) fused to” the other ring requiring further unsaturation besides the carbon carbon bond which it shares with the ring to which it is fused (i.e., the “phenyl or pyridyl”). This is illustrated below. partially unsaturated cyclopentyl fused to phenyl, i.e., "cyclopentyl fused to phenyl"
5-membered partially unsaturated heterocyclyl
Figure imgf000023_0002
fused to the phenyl, i.e.
"heterocyclyl fused to phenyl"
[0043] A further example below shows a carbocyclyl moiety fused to a Ring B as defined in the embodiments herein. Said carbocyclyl does not explicitly require a descriptor of “partially unsaturated” to describe said carbocyclyl because it shares two carbons with the aromatic pyridine to which it is fused. Such language is used herein to describe such systems, for example, “R4A and R4B, along with their intervening atoms, join to form 4-7-membered carbocyclyl that is fused to Ring B” as shown in the image below. As such, “Ring B” may refer to a monocyclic ring (i.e., the pyridine shown below and its substituents which do not form a fused ring), without any further fused rings created by its substituents (i.e., R4A and R4B). Any further fused ring created by the substituents of Ring B is described as being “fused to Ring B.” Likewise, R4A and R4B, along with their intervening atoms, join to form 4-7-membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B (not pictured), is subject to the same interpretation. embered
Figure imgf000024_0001
car ocyclyl that is
Ring B fused to Ring B
[0044] The term “alkenylene” refers to a bivalent alkenyl group. A substituted alkenylene chain is a polymethylene group containing at least one double bond in which one or more hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.
[0045] The term “halogen” means F, Cl, Br, or I.
[0046] The term “aryl” used alone or as part of a larger moiety as in “aralkyl,” “aralkoxy,” or
“aryloxyalkyl,” refers to monocyclic or bicyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members. The term “aryl” may be used interchangeably with the term “aryl ring.” In certain embodiments of the present invention, “aryl” refers to an aromatic ring system which includes, but not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which may bear one or more substituents. Also included within the scope of the term “aryl,” as it is used herein, is a group in which an aromatic ring is fused to one or more non-aromatic rings, such as indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like.
[0047] The term “cubanyl” refers to a substituent of cubane as shown below.
Figure imgf000025_0001
[0048] The terms “heteroaryl” and “heteroar-,” used alone or as part of a larger moiety, e.g., “heteroaralkyl,” or “heteroaralkoxy,” refer to groups having 5 to 10 ring atoms, preferably 5, 6, 9 or 10 ring atoms; having 6, 10, or 14 n electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to five heteroatoms. The term “heteroatom” refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quatemized form of a basic nitrogen. Heteroaryl groups include, without limitation, pyrazinyl, pyrazolyl, pyridazinyl, pyridyl, pyrimidinyl, triazinyl, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl (i.e., 1,2,3-triazolyl), 1,2,4-triazolyl, 1,2,5-triazolyl, 1,3,4-triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, indolizinyl, purinyl, naphthyridinyl, and pteridinyl. The terms “heteroaryl” and “heteroar-,” as used herein, also include groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where unless otherwise specified, the radical or point of attachment is on the heteroaromatic ring or on one of the rings to which the heteroaromatic ring is fused. Nonlimiting examples include indolyl, isoindolyl, benzothienyl, benzofuranyl, dibenzofuranyl, indazolyl, indolizinyl, isoindolin-l-only, l,2-dihydro-3H- pyrrolo[3, 4-c]pyri din-3 -onyl, 2,3-dihydro-lH-pyrrolo[3,4-c]pyridin-l-onyl, imidazo[l,2- a]pyridyl, imidazo[l,5-a]pyridyl, pyrazolo[l,5-a]pyridyl, pyrrolo[l,2-b]pyridazinyl, pyrrolo[l,2- a]pyrimidinyl, imidazo[l,2-b]pyridazinyl, imidazo[l,2-a]pyrimidinyl, benzimidazolyl, benzthiazolyl, quinolyl, isoquinolyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, 4//- quinolizinyl, carbazolyl, acridinyl, phenazinyl, phenothiazinyl, phenoxazinyl, tetrahydroquinolinyl, and tetrahydroisoquinolinyl. A heteroaryl group may be mono- or bicyclic. The term “heteroaryl” may be used interchangeably with the terms “heteroaryl ring,” “heteroaryl group,” or “heteroaromatic,” any of which terms include rings that are optionally substituted. The term “heteroaralkyl” refers to an alkyl group substituted by a heteroaryl, wherein the alkyl and heteroaryl portions independently are optionally substituted. s _ QLI
[0049] As used herein “Me” refers to the substituent * 3 . [0050] As used herein, the terms “heterocycle,” “heterocyclyl,” “heterocyclic radical,” and “heterocyclic ring” are used interchangeably and refer to a stable 5- to 7-membered monocyclic or 7-10-membered bicyclic heterocyclic moiety that is either saturated or partially unsaturated, and having, in addition to carbon atoms, one or more, preferably one to four, heteroatoms, as defined above. Said 7-10-membered bicyclic heterocyclic moiety that is partially unsaturated may include an aryl or heteroaryl ring fused to a non-aromatic ring. For example, said 7-10-membered bicyclic heterocyclic moiety may include a bicyclic heterocyclyl as shown below:
Figure imgf000026_0001
When used in reference to a ring atom of a heterocycle, the term “nitrogen” includes a substituted nitrogen. As an example, in a saturated or partially unsaturated ring having 0-3 heteroatoms selected from oxygen, sulfur or nitrogen, the nitrogen may be N (as in 3,4-di hydro-2// pyrrol y I), NH (as in pyrrol i di nyl), or +NR (as in //-substituted pyrrol idinyl).
[0051] A heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure and any of the ring atoms can be optionally substituted. Examples of such saturated or partially unsaturated heterocyclic radicals include, without limitation, oxetanyl, azetidinyl, tetrahydrofuranyl, tetrahydrothiophenyl pyrrolidinyl, piperidinyl, pyrrolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, morpholinyl, 2-oxa-6- azaspiro[3.3]heptane, and quinuclidinyl. The terms “heterocycle,” “heterocyclyl,” “heterocyclyl ring,” “heterocyclic group,” “heterocyclic moiety,” and “heterocyclic radical,” are used interchangeably herein, and also include groups in which a heterocyclyl ring is fused to one or more aryl, heteroaryl, or cycloaliphatic rings, such as indolinyl, 3//-indolyl, chromanyl, phenanthridinyl, or tetrahydroquinolinyl. A heterocyclyl group may be mono- or bicyclic. The term “heterocyclyl alkyl” refers to an alkyl group substituted by a heterocyclyl, wherein the alkyl and heterocyclyl portions independently are optionally substituted. [0052] “Arylene” or “heteroaiylene,” as used herein (i.e., phenylene), refers to any bivalent aryl or heterocyclyl described herein, that is a bisradical substituted at each of two substitutable positions of the ring system as described in detail supra.
[0053] “Heterocyclyloxy,” as used herein, refers to an -OR group wherein the R is a heterocyclyl. Nonlimiting examples are shown below.
Figure imgf000027_0001
[0054] As used herein, the term “partially unsaturated” refers to a ring moiety that includes at least one double or triple bond. The term “partially unsaturated” is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aryl or heteroaryl moieties, as herein defined.
[0055] As described herein, compounds of the invention may contain “optionally substituted” moieties. In general, the term “substituted,” whether preceded by the term “optionally” or not, means that one or more hydrogens of the designated moiety are replaced with a suitable substituent. Unless otherwise indicated, an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds. The term “stable,” as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.
[0056] Suitable monovalent substituents on a substitutable carbon atom of an “optionally substituted” group are independently halogen; -(Cfhjo 4B(OR°)2; -(CH2)o 4R0; -(CH2)o 4OR0; - 0(CH2)o-4R°; -0-(CH2)O 4C(O)OR°; -(CH2)O ^CH(ORO)2; -(CH2)O 4SRO; -(CH2)O 4Ph, which may be substituted with R°; -(CH2)o-40(CH2)o-iPh which may be substituted with R°; - CH=CHPh, which may be substituted with R°; -(CH2)o 40(CH2)o 1 -pyridyl which may be substituted with R°; -NO2; -CN; -N3; -(CH2)o-4N(R°)2; -(CH2)o^N(R°)C(0)R°; -N(R°)C(S)R°; -(CH2)O 4N(R°)C(O)NR°2; -N(RO)C(S)NR°2; -(CH2)O 4N(RO)C(O)OR°; -N(R°)N(R°)C(O)R°; - N(R°)N(R°)C(O)NR°2; -N(R°)N(R°)C(O)OR°; -N(R°)C(NRO)N(RO)2: -(CH2)O 4C(O)RO; - C(S)R°; -(CH2)O-4C(0)OR°; -(CH2)O 4C(O)SRO: -(CH2)O 4C(O)OSiR°3; -(CH2)0 4OC(O)R°; - OC(0)(CH2)o 4SRO; -(CH2)O-4SC(0)R°; -(CH2)O 4C(0)NRO 2; -C(S)NRO 2; -C(S)SR°; - SC(S)SR°; -(CH2)O 4OC(O)NRO 2; -C(O)N(OR°)R°; -C(O)C(O)R°; -C(O)CH2C(O)RO; - C(NOR°)R°; -(CH2)O 4SSR°; -(CH2)O 4S(O)2RO; -(CH2)O 4S(O)2ORO; -(CH2)O 4OS(O)2RO; - S(O)2NR°2; -(CH2)O 4S(O)RO; -N(RO)S(O)2NR°2; -N(RO)S(O)2R°; -N(OR°)R°; -C(NH)NRO 2; - (CH2)O 4P(O)2R°; -(CH2)O 4P(O)RO 2; -(CH2)O 40P(0)RO 2; -(CH2)O 4OP(O)(OR°)2; -SiR°3; -(Ci 4 straight or branched alkylene)O-N(R°)2; or -(C1-4 straight or branched alkylene)C(O)O-N(R°)2, wherein each R° may be substituted as defined below and is independently hydrogen, Ci- 6 aliphatic, -SO2-Ci-4 aliphatic (i.e., -SO2CH3) -CH2Ph, -0(CH2)o iPh, -CH2-(5-6 membered heteroaryl ring), or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R°, taken together with their intervening atom(s), form a 3-12-membered saturated, partially unsaturated, or aryl mono- or bicyclic ring having 0- 4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, which may be substituted as defined below.
[0057] Suitable monovalent substituents on R° (or the ring formed by taking two independent occurrences of R° together with their intervening atoms), are independently halogen, -(CH2)o 2R*, -(haloR*), -(CH2)0 2OH, -(CH2)O 2OR’, -(CH2)O 2CH(OR’)2; -O(haloR’), -CN, -N3, -(CH2)0 2C(O)R’, -(CH2)O 2C(O)OH, -(CH2)O 2C(O)OR*, -(CH2)O 2SR’, -(CH2)O 2SH, -(CH2)O 2NH2, - (CH2)O-2NHR*, -(CH2)O 2NR*2, -NO2, -SiR*3, -OSiR*3, -C(O)SR* -(Ci-4 straight or branched alkylene)C(O)OR*, or -SSR* wherein each R* is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently selected from Ci-6 aliphatic, - CH2Ph, -0(CH2)o iPh, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0- 4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suitable divalent substituents on a saturated carbon atom of R° include =0 and =S.
[0058] Suitable divalent substituents on a saturated carbon atom of an “optionally substituted” group, which includes instances of R° (or the ring formed by taking two independent occurrences of R° together with their intervening atoms), include the following: =0, =S, =NNR*2, =NNHC(0)R*, =NNHC(0)0R*, =NNHS(0)2R*, =NR*, -NOR*, -O(C(R*2))2 3O-, or - S(C(R*2))2-3S- wherein each independent occurrence of R* is selected from hydrogen, Ci- 6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suitable divalent substituents that are bound to vicinal substitutable carbons of an “optionally substituted” group include: -O(CR*2)2-3O- wherein each independent occurrence of R* is selected from hydrogen, C1-6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0- 4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0059] Suitable substituents on the aliphatic group of R* include halogen, -R*, -(haloR*), -OH, -OR*, -O(haloR’), -CN, -C(O)OH, -C(O)OR*, -NH2, -NHR*, -NR*2, or -NO2, wherein each R* is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C 1-4 aliphatic, -CH2Ph, -0(CH2)o iPh, or a 5-6- membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0060] Suitable substituents on a substitutable nitrogen of an “optionally substituted” group include -R\ -NR^, -C(O)Rf, -C(O)ORt, -C(O)C(O)Rf, -C(O)CH2C(O)Rt, -S(O)2Rt, -S(O)2NRt2, -C^NR^, -C(NH)NRt 2, or -N(Rt)S(O)2Rt; wherein each R; is independently hydrogen, Ci-6 aliphatic which may be substituted as defined below, unsubstituted -OPh, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R’1', taken together with their intervening atom(s) form an unsubstituted 3-12-membered saturated, partially unsaturated, or aryl mono- or bicyclic ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0061] Suitable substituents on the aliphatic group of R: are independently halogen, -R*, -(haloR*), -OH, -OR*, -O(haloR*), -CN, -C(O)OH, -C(O)OR*, -NH2, -NHR*, -NR*2, or -NO2, wherein each R* is unsubstituted or where preceded by “halo” is substituted only with one or more halogens, and is independently C 1-4 aliphatic, -CH2Ph, -0(CH2)o iPh, or a 5-6- membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
[0062] As used herein, the term “pharmaceutically acceptable salt” refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecyl sulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2- hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like.
[0063] Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N (C, 4alkyl)4 salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate.
[0064] Unless otherwise stated, structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, Z and E double bond isomers, Z and E conformational isomers and Ra (or M) and Sa (or P) atropisomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention. Additionally, unless otherwise stated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures including the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13C- or 14C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools, as probes in biological assays, or as therapeutic agents in accordance with the present invention. In certain embodiments, Ring A of a provided compound may be substituted with one or more deuterium atoms.
[0065] The structures as drawn represent relative configurations, unless labeled as absolute configurations. The invention contemplates individual enantiomers and racemic mixtures.
3. Description of Exemplary Embodiments:
[0066] In one aspect, the disclosure provides a compound of Formula I, or a pharmaceutically acceptable salt thereof:
Figure imgf000031_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; -L- is a linker selected from ; R1 is selected from groups
Figure imgf000032_0001
a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, C1-C6alkoxy, haloC1- C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3-C6cycloalkoxy, C1-C6alkylene-O- C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is C(RB)2C(O)N(R)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl or pyridyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is substituted with 0-5 independently selected halogen; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[0067] In one aspect, the disclosure provides a compound of Formula Ix, or a pharmaceutically acceptable salt thereof:
Figure imgf000035_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein if Y is S, then Z is N or wherein if Y is N, then Z is S and wherein the 5-membered ring comprising Z and Y is aromatic; R1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is C(RB)2C(O)N(R)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl or pyridyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is optionally substituted with 0-5 independently selected halogen; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted C1-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[0068] In one aspect, the disclosure provides a compound of Formula F, or a pharmaceutically acceptable salt thereof:
Figure imgf000039_0001
wherein Ring A represents: b) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or c) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein if Y is S, then Z is N or wherein if Y is N, then Z is S and wherein the 5-membered ring comprising Z and Y is aromatic;
R1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11 , -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is selected from C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2N(R)C(O) N(R)R2A, and C(RB)2C(RB)2N(R)C(O)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is substituted with 0-5 independently selected halogen, and wherein 2 substituents on the saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring form a cyclic group selected from: ^ an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclyl, and ^ an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[0069] In one aspect, the disclosure provides a compound of Formula I”, or a pharmaceutically acceptable salt thereof:
Figure imgf000043_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; L is a linker selected from ; R1 is selected from group
Figure imgf000044_0001
a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is selected from C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2N(R)C(O) N(R)R2A, and C(RB)2C(RB)2N(R)C(O)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5, two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7-membered carbocyclyl fused to the phenyl or pyridyl, and two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7-membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7-membered carbocyclyl or 4-7-membered heterocyclyl is substituted with 0-5 independently selected halogen, and wherein 2 substituents on the same atom of said saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring form a cyclic group selected from: ^ an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclyl, and ^ an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted C1-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur). [0070] In some embodiments, if Y is S the and wherein if Y is N then
Figure imgf000047_0001
hen
Figure imgf000047_0002
[0071] In one aspect, the present invention provides a compound of Formula I, I’, Ix, Iy, or I’’, wherein R4 is selected from one of a), b), and c): a) R4 is a Ring B that is selected from the group consisting of: wher
Figure imgf000048_0001
and wherein: any substituents that are present on Ring B selected from R4A, R4B, R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4B and R4C, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3- C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4B, R4E and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E is halogen or -OH, and R4A, R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4F and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1- C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; and R14 is hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3; or b) R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy; or c) R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy. [0072] As described generally above, Ring A is a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected RA substituents. [0073] In some embodiments, Ring A is a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected RA substituents. In some embodiments, Ring A is a 4- 7 membered saturated or partially unsaturated bivalent monocyclic carbocyclylene, wherein Ring A is substituted with 0-4 independently selected RA substituents. In some embodiments, Ring A is a 4-7 membered saturated or partially unsaturated bivalent monocyclic heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected RA substituents.
[0074] In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene and heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected RA substituents. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic and is a carbocyclylene, wherein Ring A is substituted with 0-4 independently selected RA substituents. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic and is a heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein Ring A is substituted with 0-4 independently selected RA substituents.
[0075] In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising 2 fused rings. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising a spirocyclic ring system. In some embodiments, Ring A is a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system comprising a bridged ring system.
[0076] In some embodiments, Ring A is selected from
Figure imgf000051_0001
and wherein Ring A is substituted with 0-4 independently selected RA substituents.
[0077] In some embodiments, Ring A is . [0078] In some embodiments, Ring
Figure imgf000052_0001
. [0079] In some embodiments, Ring
Figure imgf000052_0002
. [0080] In some embodiments, Ring
Figure imgf000052_0003
cted from one of the substituents of Table 1, Table 1a or Table 1b. [0081] As described generally above, R1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6aliphatic, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl and heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, -CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3- C7cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA. [0082] In some embodiments, R1 is a 5-6 monocyclic membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 - 3 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3- C6cycloalkoxy, wherein said 5-6 membered monocyclic heteroaryl is further substituted with 0-2 independently selected RA. In some embodiments, R1 is a 4- or 6-membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen. In some embodiments, R1 is a 6-8 membered saturated or partially unsaturated bridged bicyclic heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen. In some embodiments, R1 is a 3-7 membered optionally substituted carbocyclyl. In some embodiments, R1 is an optionally substituted C2-C4alkenyl. In some embodiments, R1 is cyclopropyl substituted C2-C4alkenyl. In some embodiments, R1 is methyl substituted C2alkenyl. [0083] In some embodiments, R1 is a 6-membered partially unsaturated heterocyclyl (having 1 oxygen atom). In some embodiments, R1 is a 6-membered heteroaryl (having 1 nitrogen atom), said heteroaryl may be optionally substituted with 1 or 2 groups independently selected from C1- C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said heteroaryl is further substituted with 0-1 RA, wherein RA is an optionally substituted C1-6 aliphatic group. In some embodiments, R1 is a 6-membered heteroaryl (having 2 nitrogen atoms), said heteroaryl may be optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said heteroaryl is further substituted with 0-1 RA, wherein RA is an optionally substituted C1-6 aliphatic group. [0084] In some embodiments, R1 is a bicyclic 9-10 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said bicyclic 9-10 membered heteroaryl is further substituted with 0-3 independently selected RA. [0085] In some embodiments, R1 is a 5-membered heteroaryl (having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said 5-membered heteroaryl is optionally further substituted with 0-2 independently selected RA. In some embodiments, R1 is a 5-membered heteroaryl (having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy. In some embodiments, R1 is a 5-membered heteroaryl (having 2 nitrogen atoms) substituted with 1 or 2 groups independently selected from C1-C6alkoxy, C3-C6cycloalkyl, and C3-C6cycloalkoxy, wherein said 5-membered heteroaryl is optionally further substituted with 0-1 RA, wherein RA is hydroxyl substituted C1-C4alkyl. [0086] In some embodiments, R1 is a 5-6 membered heteroaryl (having 1-4 heteroatoms is independently selected from nitrogen, oxygen, and sulfur) optionally substituted with one group of C1-C6alkoxy or C3-C6cycloalkyl, wherein said 5-6 membered heteroaryl is optionally further substituted with 0-3 independently selected RA. [0087] In some embodiments, R1 is pyridyl substituted with C1-C4alkoxy and further substituted with 0-2 RA substituents. [0088] In some embodiments, R1 is 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur, and 0 or 1 additional ring nitrogen atoms), wherein said 5-membered heteroaryl is optionally substituted with Ci-Cealkyl, or C3- Cscycloalkyl and further substituted with 0-2 RA substituents.
[0089] In some embodiments, R1 is a) a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen; or b) a 6-8 membered saturated or partially unsaturated bridged bicyclic heterocyclyl (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
[0090] In some embodiments, R1 is a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-4 aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
[0091] In some embodiments, R1 is a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) substituted with 1 group selected from Ci-C6alkoxy and C3-C6cycloalkyl, wherein said 5-6 membered heteroaryl is further substituted with 0-3 independently selected RA.
[0092] In some embodiments, R1 is
Figure imgf000056_0001
Figure imgf000057_0002
[0095] In some embodiments, R1 is
Figure imgf000057_0001
[0096] In some embodiments, R1 is , Table
Figure imgf000058_0001
1a or Table 1b. [0098] As described generally above, RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1-C6alkyl, an optionally substituted C3- C6cycloalkyl, haloC3-C6cycloalkyl, C1-C6alkoxy, haloC1-C6alkoxy, C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R. [0099] In some embodiments, RA is independently selected at each occurrence from the group consisting of halogen, -OR, or an optionally substituted C1-6aliphatic group. In some embodiments, RA is independently selected at each occurrence from a halogen. In some embodiments, RA is independently selected at each occurrence from an -OR. In some embodiments RA is an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur). In some embodiments, RA is an optionally substituted C3- C6cycloalkyl. In some embodiments, RA is independently selected at each occurrence from an optionally substituted C1-6aliphatic group. [00100] In some embodiments, RA is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00101] As described generally above, R2 is C(RB)2C(O)N(R)R2A. In some embodiments, R2 is C(RB)2C(RB)2C(O)N(R)R2A. In some embodiments, R2 is C(RB)2C(RB)2N(R)C(O)N(R)R2A. In some embodiments, R2 is C(RB)2C(RB)2N(R)C(O)R2A. In some embodiments, R2 is CH2C(O)N(H)R2A. In some embodiments, R2 is CH2CH2C(O)N(H)R2A. In some embodiments, R2 is CH2CH2N(R)C(O)N(R)R2A. In some embodiments, R2 is CH2CH2N(H)C(O)R2A. In some embodiments, R2 is C(RB)2C(O)N(H)R2A, wherein R2A is phenyl or bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, or haloC1- C4alkyl. In some embodiments, R2 is C(RB)2C(O)N(H)R2A, wherein R2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, or haloC1- C4alkyl. In some embodiments, R2 is C(RB)2C(O)N(H)R2A, wherein R2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, or haloC1-C4alkyl. [00102] In some embodiments, R2 is
Figure imgf000059_0001
Figure imgf000060_0003
[00104] In some embodiments, R2 is
Figure imgf000060_0001
[00105] In some embodiments,
Figure imgf000060_0002
[00106] In some embodiments, R2 is as selected from one of the substituents of Table 1, Table la or Table lb.
[00107] As described generally above, RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring. In some embodiments, RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3. In some embodiments, RB is hydrogen. In some embodiments, two RB taken together with the carbon to which they are attached form a cyclopropyl ring.
[00108] In some embodiments, RB is as selected from one of the substituents of Table 1, Table la or Table lb.
[00109] As described generally above, R2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, Ci-C4aliphatic, haloCi-C4alkyl, C3-C6cycloalkyl, haloCs-Cecycloalkyl, -OH, -CN, Ci-C^ialkoxy, haloCi-C4alkoxy, C3-C6- cycloalkoxy, haloCs-Cecycloalkoxy and -SFs, or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is substituted with 0-5 independently selected halogen, and wherein 2 substituents on the same atom of said saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring form a cyclic group selected from:
• an optionally substituted 4-7 membered saturated or partially unsaturated carbocyclyl, and
• an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclyl having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH. [00110] In some embodiments, there are 1-6 respective instances of wherein 2 substituents on the same 1st, 2nd, 3rd, 4th, 5th, or 6th atom of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form 1-6 of said cyclic groups. In some embodiments, there is one instance wherein 2 substituents on the same atom of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form one of said cyclic groups. In some embodiments, there 2 respective instances of wherein 2 substituents on the same 1st and 2nd atoms of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form both of said cyclic groups. In some embodiments, there are 3 respective instances of wherein 2 substituents on the same 1st, 2nd, and 3rd, atoms of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form the three of said cyclic groups. In some embodiments, there are 4 respective instances of wherein 2 substituents on the same 1st, 2nd, 3rd, and 4th atoms of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form the four of said cyclic groups. In some embodiments, there are 5 respective instances of wherein 2 substituents on the same 1st, 2nd, 3rd, 4th and 5th atoms of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form the five of said cyclic groups. In some embodiments, there 6 respective instances of wherein 2 substituents on the same 1st, 2nd, 3rd, 4th 5th, and 6th atoms of said saturated or partially unsaturated monocyclic ring, or said saturated or partially unsaturated bridged, fused, or spirocyclic ring form the six of said cyclic groups. [00111] In some embodiments, R2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5, two substituents on adjacent atoms of the phenyl together with their intervening atoms form a 4-7 membered carbocyclyl fused to the phenyl, and two substituents on adjacent atoms of the phenyl together with their intervening atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl. [00112] In some embodiments, R2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5. In some embodiments, R2A is phenyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1- C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is phenyl optionally substituted with a halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is phenyl optionally substituted with 2 substituents independently selected from halogen, C1-C4alkyl, and haloC1- C4alkyl. In some embodiments, R2A is phenyl optionally substituted with 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. [00113] In some embodiments, R2A is pyridyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5, two substituents on adjacent atoms of the pyridyl together with their intervening atoms form a 4-7 membered carbocyclyl fused to the pyridyl, and two substituents on adjacent atoms of the pyridyl together with their intervening atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the pyridyl. [00114] In some embodiments, R2A is pyridyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6- cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5. In some embodiments, R2A is pyridyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1- C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is pyridyl optionally substituted with a halogen, C1-C4alkyl, or haloC1-C4alkyl. In some embodiments, R2A is pyridyl optionally substituted with 2 substituents independently selected from halogen, C1-C4alkyl, and haloC1- C4alkyl. In some embodiments, R2A is pyridyl optionally substituted with 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. [00115] In some embodiments, R2A is cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said cubanyl, partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, - CN, C1-C4alkoxy, haloC1-C3alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5. In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is bicyclo[2.2.2]octyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is bicyclo[3.1.0]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is cubanyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is 2-oxabicyclo[2.1.1]hexan-4-yl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. [00116] In some embodiments, R2A is a saturated or partially unsaturated bridged 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said bridged ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3- C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5. [00117] In some embodiments, R2A is a saturated or partially unsaturated fused 5-, 6-, 7-, 8-, 9- , 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said fused ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5. [00118] In some embodiments, R2A is a saturated or partially unsaturated spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, which contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said spirocyclic ring is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1- C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6- cycloalkoxy, haloC3-C6cycloalkoxy and –SF5. [00119] In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6- cycloalkoxy and –SF5. In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with a halogen, C1- C4alkyl, or haloC1-C4alkyl. In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with 2 substituents independently selected from halogen, C1-C4alkyl, and haloC1- C4alkyl. In some embodiments, R2A is bicyclo[1.1.1]pentyl optionally substituted with 3 substituents independently selected from halogen, C1-C4alkyl, and haloC1-C4alkyl. [00120] In some embodiments, R2A is Ring F selected from the group consisting of: , wherein x, y, and q are independently selected
Figure imgf000065_0001
, , , p y from O, NR15, CHR15 or CR15R15; R15 is independently selected from H, halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6cycloalkoxy and –SF5. [00121] In some embodiments, R2A is Ring F of the following structu , wherein R15 is selected from halogen, C
Figure imgf000065_0002
1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6- cycloalkoxy and –SF5. [00122] In some embodiments, R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl and -OH. In some embodiments, R2A is 2-benzimidazolyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl and -OH. In some embodiments, R2A is 3-quinolinyl optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl, and -OH. [00123] In some embodiments, R2A is phenyl comprising a -CF3 substituent or pyridyl comprising a -CF3 substituent. [00124] In some embodiments, R2A is bicyclo[1.1.1]pentyl comprising a -CF3 substituent or bicyclo[1.1.1]pentyl comprising a -CHF2 substituent. In some embodiments, R2A is bicyclo[2.2.2]octyl comprising a -CF3 substituent or bicyclo[2.2.2]octyl comprising a -CHF2 substituent. In some embodiments, R2A is bicyclo[3.1.0]pentyl comprising a -CF3 substituent or bicyclo[3.1.0]pentyl comprising a -CHF2 substituent. In some embodiments, R2A is cubanyl comprising a -CF3 substituent or cubanyl comprising a -CHF2 substituent. [00125] In some embodiments, R2A is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00126] As described generally above, R3 is hydrogen, C1-C4alkyl, C3-C5cycloalkyl, C1- C4alkoxy, -NHR3A, -N(R3A)2 or C1-C4alkylthio each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. [00127] In some embodiments, R3 is hydrogen. In some embodiments, R3 is C1-C4alkyl optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is C1-C4alkyl. In some embodiments, R3 is -CH2CH3. In some embodiments, R3 is -CH3. In some embodiments, R3 is C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2 or C1- C4alkylthio optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is C3-C5cycloalkyl optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is C1-C4alkoxy optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is - NHR3A optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is -N(R3A)2 optionally substituted with -OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is C1-C4alkylthio optionally substituted with - OH, 1-5 independently selected halogen, or C1-C4alkoxy. In some embodiments, R3 is selected from the group consisting of C1-C4alkyl and C3-C5cycloalkyl. [00128] In some embodiments, R3 is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00129] As described generally above, each R3A is independently selected at each occurrence from C1-C4alkyl. In some embodiments, R3A is -CH3. In some embodiments, R3A is -CH2CH3. In some embodiments, R3A is propyl. In some embodiments, R3A is butyl. [00130] In some embodiments, R3A is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00131] As described generally above L is a linker selected from -C(O)-, -S(O)-, -S(O)2-, and .
Figure imgf000067_0001
[00132] In some embodiments, linker L is -C(O)-. [00133] In some embodiments, linker L is -S(O)-. [00134] In some embodiments, linker L is -S(O)2-. [00135] In some embodiments, linker L i .
Figure imgf000067_0002
[00136] In some embodiments, linker L is as selected from one of the substituents of Table 1, Table 1a or Table 1b. [00137] As described generally above, R4 is selected from one of a), b), and c): a) R4 is a Ring B that is selected from the group consisting of
wherein *
Figure imgf000068_0001
; and wherein: any substituents that are present on Ring B selected from R4A, R4B, R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1- C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4B and R4C, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3- C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 optionally substituted membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4B, R4E and R4F are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1- C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E is halogen or -OH, and R4A, R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4F and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; and R14 is hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3; or b) R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy; or c) R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6-membered heterocyclyl, and optionally substituted 5-6- membered heterocyclyloxy. [00138] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000070_0001
n er a s onded to Ring A in Formula I; and wherein: R4A, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1- C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, - OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered carbocyclyl or 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4A is hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; or NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00139] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000071_0001
Ring A in Formula I; and wherein: R4A is -OCH3, -OCH2CH3, or -OCHF2; R4C and R4D are each independently selected from hydrogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00140] In some embodiments, R4 is Ring B of the following structure:
Figure imgf000071_0002
wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R4A is -OCH3, -OCH2CH3, or -OCHF2; R4C and R4D are each independently selected from hydrogen; -CN; C1-C4alkyl; C2- and R4D are each independently selected from hydrogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2- C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; and R14 is hydrogen or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00141] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000072_0001
a s o e o Ring A in Formula I; and wherein: R4A, R4C, and R4D are each independently selected from hydrogen; halogen; and C1- C4alkyl. [00142] In some embodiments, R4 is Ring B of the following structure:
Figure imgf000072_0002
wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R4A, R4B, and R4C are each independently selected from hydrogen; halogen; -CN; C1- C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4C is hydrogen; halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4B and R4C, along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4A is hydrogen; halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00143] In some embodiments, R4 is Ring B of the following structure:
Figure imgf000073_0001
wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R4A and R4B, along with their intervening atoms, join to form 4-7-membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4C is hydrogen. [00144] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to
Figure imgf000074_0001
Ring A in Formula I; and wherein: R4A and R4B, along with their intervening atoms, join to form 5-membered heterocyclyl (having 1 oxygen atom) that is fused to Ring B; and R4C is hydrogen. [00145] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000074_0002
that is bonded to Ring A in Formula I; and wherein: R4A, R4B, and R4D are each independently selected from hydrogen; halogen; -CN; C1- C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4D is hydrogen; halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; or NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00146] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000075_0001
Ring A in Formula I; and wherein: R4A and R4D are each hydrogen; and R4B is C1-C4alkyl. [00147] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000075_0002
that is bonded to Ring A in Formula I; and wherein: R4A and R4C are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with - OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00148] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to
Figure imgf000076_0001
Ring A in Formula I; and wherein: R4A and R4C are each independently selected from hydrogen and C1-C4alkyl. [00149] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000076_0002
t at s bonded to Ring A in Formula I; and wherein: R4A, R4B, R4C, R4D, and R4E are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3- C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4C, R4D, and R4E are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4A, R4B, and R4E are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E is halogen or -OH, and R4A, R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E and R4A, along with their intervening atoms, join to form 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to Ring B; and R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 s hydrogen; or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00150] In some embodiments, R4 is Ring B of the following structure:
Figure imgf000077_0001
wherein * is a point of attachment to L that is bonded to Ring A in Formula I; and wherein: R4A, R4B, R4C, R4D, and R4E are each independently selected from hydrogen; halogen; C1- C4alkyl; and C1-C4alkoxy; or R4C and R4D, along with their intervening atoms, join to form a 4- 7-membered heterocyclyl (having 1-3 nitrogen atoms) fused to Ring B; and R4A, R4B, and R4E are each hydrogen. [00151] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000078_0001
Ring A in Formula I; and wherein: R4F and R4A, along with their intervening atoms, join to form 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to Ring B; and R4B and R4C are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 may combine with the N to which they are attached to form a heterocyclic ring selected from azetidinyl, pyrrolidinyl, or piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00152] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to
Figure imgf000079_0001
Ring A in Formula I; and wherein: R4F and R4A, along with their intervening atoms, join to form 5-6-membered heteroaryl (having 1-2 nitrogen atoms) fused to Ring B; and R4B and R4C are each hydrogen. [00153] In some embodiments, R4 is Ring B of the following structure: wherein * is a point of attachment to L
Figure imgf000079_0002
Ring A in Formula I; and wherein: R4A, R4C, R4D, and R4F are each independently selected from hydrogen; halogen; -CN; C1- C4alkyl; C2-C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl or optionally substituted heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4A and R4F are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4F and R4A, along with their intervening atoms, join to form 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4C and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1- C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 may combine with the N to which they are attached to form a heterocyclic ring selected from azetidinyl, pyrrolidinyl, or piperidinyl, said heterocyclic ring optionally substituted with -CH3. [00154] In some embodiments, R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy. [00155] In some embodiments, R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from OH, - CH3, -CHF2, cyclopropyl, and -OCH3. [00156] In some embodiments, R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6-membered heterocyclyl, and optionally substituted 5-6- membered heterocyclyloxy. In some embodiments, R4 is a C1-C4alkyl, substituted with 0-3 independently selected halogen, -CN, -OH, C1-C4alkyl, and C1-C4alkoxy. In some embodiments, R4 is a C1-C4alkoxy, substituted with 0-3 independently selected halogen, -CN, -OH, C1-C4alkyl, and C1-C4alkoxy. In some embodiments, R4 is a C3-C6cycloalkyl, substituted with 0-3 independently selected halogen, -CN, -OH, C1-C4alkyl, and C1-C4alkoxy. [00157] In some embodiments, R4 is an isoxazolyl substituted with -OH or C1-C4alkoxy. [00158] In some embodiments, R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms) selected from the group consisting of thiophenyl, imidazolyl, pyrazolyl, tetrazolyl, thiazolyl, isothiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, oxazolyl, isoxazolyl, 1,2,4- oxadiazolyl, 1,2,3-triazolyl, 1,2,4-triazolyl, wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy. [00159] In some embodiments, R4 is , , , , , , ,
Figure imgf000081_0001
Figure imgf000082_0002
Figure imgf000082_0001
some embodiments, R4 is as shown in a substituent of Table 1, Table la or Table lb. [00161] As described generally above, each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[00162] In some embodiments, each R is independently hydrogen, or an optionally substituted Ci-6aliphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[00163] In some embodiments, two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, partially unsaturated ring, or heteroaryl ring (wherein said 4-7 membered saturated ring, partially unsaturated ring, or heteroaryl ring, has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
[00164] In some embodiments, each R is independently hydrogen or a Ci-6 alkyl. In some embodiments, R is hydrogen.
[00165] In some embodiments, each R is as selected from one or more of the substituents of Table 1, Table la or Table lb. In some embodiments, the compound of Formula I is a compound of Formula I-a, Formula I-b, or a pharmaceutically acceptable salt thereof:
Figure imgf000084_0001
[00166] wherein Ring A, R1, R2, R3, and R4, are as defined herein, both singly and in combination. In some embodiments, the compound of Formula l is a compound of Formula I-a, or I-b or a pharmaceutically acceptable salt thereof
Figure imgf000084_0002
wherein Ring A, R1, R2, R3, and R4, are as defined herein, both singly and in combination and R2a
Figure imgf000084_0004
[00167] In some embodiments, the compound of Formula I is a compound of Formula I-a, Formula I-b, or a pharmaceutically acceptable salt thereof:
Figure imgf000084_0003
wherein R1, R2, R3, and R4, are as defined herein, both singly and in combination, Ring A is
Figure imgf000085_0001
[00168] In some embodiments, the compound of Formula I is a compound of Formula ILa, Formula Il-b, Formula ILc, or a pharmaceutically acceptable salt thereof:
Figure imgf000085_0002
wherein Ring A, Linker L, R2, R3, Y, Z and R4, are as defined herein, both singly and in combination.
[00169] In some embodiments, the compound of Formula I is a compound of Formula ILd,
Formula Il-e, Formula Il-f, or a pharmaceutically acceptable salt thereof:
Figure imgf000085_0003
wherein Ring A, R2, R3, Y, Z and R4, are as defined herein, both singly and in combination. [00170] In some embodiments, the compound of Formula I is a compound of Formula III-a, Formula III-b, Formula III-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000086_0001
wherein Ring A, R1, R2, Y, Z and R3, are as defined herein, both singly and in combination, and wherein: X is CH, CR7, or N; R5 is -OH or halogen; R6 is halogen, C1-4alkyl, or C1-4alkoxy; each R7 is independently hydrogen, halogen, C1-4alkyl, or C1-4alkoxy; R8 is C1-4alkyl; each of the 0-2 instances of R9 is independently a hydrogen or C1-4alkyl. In some embodiments: X is CH or N; R5 is -OH or fluoro; R6 is fluoro, -CH3, or -OCH3; each R7 is independently hydrogen, fluoro, -CH3, or -OCH3; R8 is -CH3; each instance of R9 is independently a hydrogen or -CH3. [00171] In some embodiments, the compound of Formula I is a compound of Formula IV-a, Formula IV-b, Formula IV-c, or a pharmaceutically acceptable salt thereof: wherei
Figure imgf000087_0001
ation and wherein: R5 is -OH or halogen; and R6 is halogen, C1-4alkyl, or C1-4alkoxy. In some embodiments: R5 is -OH or fluoro; and R6 is fluoro, -CH3, or -OCH3. [00172] In some embodiments, the compound of Formula I is a compound of Formula V-a, Formula V-b, Formula V-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000088_0001
V-c wherein Ring A, R2, Y, Z and R3, are as defined herein, both singly and in combination, and wherein:
X is CH, CR7, or N; and each R7 is independently hydrogen, halogen, Ci.4alkyl, or Ci.4alkoxy. In some embodiments: X is CH or N; and R7 is hydrogen, fluoro, -CH3, or -OCH3.
[00173] In some embodiments, the compound of Formula I is a compound of Formula Vl-a, Formula Vl-b, Formula VI-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000088_0002
VI-c wherein Ring A, R2, Y, Z and R3, are as defined herein, both singly and in combination, and wherein:
R8 is Ci-4alkyl; and each of the 0-2 instances of R9 are independently a hydrogen or Ci.4alkyl. In some embodiments: R8 is -CH3; and each instance of R9 is independently a hydrogen or -CH3.
[00174] In some embodiments, the compound of Formula I is a compound of Formula Vll-a,
Formula Vll-b, or a pharmaceutically acceptable salt thereof:
Figure imgf000089_0001
Vll-a Vll-b wherein R1, R2, R3, RA and R4, are as defined herein, both singly and in combination.
[00175] In some embodiments, the compound of Formula I is a compound of Formula Vll-a, or Vll-b or a pharmaceutically acceptable salt thereof: wherein R1, R2, R3, RA and R4, are as defined herein, both singly and in combination and R2a is selected from
Figure imgf000089_0002
Figure imgf000089_0003
[00176] In some embodiments, the compound of Formula I is a compound of Formula VII-c, Formula Vll-d, Formula VH-e, or a pharmaceutically acceptable salt thereof:
Figure imgf000090_0001
Vll-e wherein R2, R3, Y, Z and R4, are as defined herein, both singly and in combination.
[00177] In some embodiments, the compound of Formula I is a compound of Formula Vlll-a, Vlll-b, Formula VIII-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000090_0002
vm-c wherein R1, R2, Y, Z and R3, are as defined herein, both singly and in combination, and wherein: X is CH, CR7, or N; R5 is -OH or halogen; R6 is halogen, C1-4alkyl, or C1-4alkoxy; each R7 is independently hydrogen, halogen, C1-4alkyl, or C1-4alkoxy; R8 is C1-4alkyl; and each of the 0-2 instances of R9 are independently a hydrogen or C1-4alkyl. In some embodiments: X is CH or N; R5 is -OH or fluoro; R6 is fluoro, -CH3, or -OCH3; each R7 is independently hydrogen, fluoro, -CH3, or -OCH3; R8 is -CH3; and each instance of R9 is independently a hydrogen or -CH3. [00178] In some embodiments, the compound of Formula I is a compound of Formula IX-a, Formula IX-b, Formula IX-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000091_0001
wherein Y, Z, R2 and R3, are as defined herein, both singly and in combination and wherein: R5 is -OH or halogen; and R6 is halogen, C1-4alkyl, or C1-4alkoxy. In some embodiments: R5 is -OH or fluoro; and R6 is fluoro, -CH3, or -OCH3. [00179] In some embodiments, the compound of Formula I is a compound of Formula X-a, Formula X-b, Formula X-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000092_0001
wherein Y, Z, R2 and R3, are as defined herein, both singly and in combination, and wherein: X is CH, CR7, or N; and each R7 is independently hydrogen, halogen, C1-4alkyl, or C1-4alkoxy. [00180] In some embodiments: X is CH or N; and each R7 is independently hydrogen, fluoro, -CH3, or -OCH3. [00181] In some embodiments, the compound of Formula I is a compound of Formula XI-a, Formula XI-b, Formula XI-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000093_0001
wherein Y, Z, R2 and R3, are as defined herein, both singly and in combination, and wherein: R8 is C1-4alkyl; and each of the 0-2 instances of R9 are independently a hydrogen or C1-4alkyl. In some embodiments: R8 is -CH3; and each instance of R9 is independently a hydrogen or -CH3. [00182] In some embodiments, the compound of Formula I is a compound of Formula X-a, Formula X-b, Formula X-c, or a pharmaceutically acceptable salt thereof:
Figure imgf000093_0002
R2 is C(RB)2C(O)NH
Figure imgf000094_0001
RB is independently selected at each occurrence from hydrogen or -CH3; R2A is phenyl, pyridyl, or bicyclo[1.1.1]pentyl each of which is optionally substituted with 1, or 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl and -OH; R3 is C1-C4alkyl, C3-C5cycloalkyl, or C1-C4alkoxy, each of which is optionally substituted with - OH, 1-3 independently selected halogen, or C1-C4alkoxy; and each R7 is independently hydrogen, halogen, C1-4alkyl, or C1-4alkoxy. [00183] In some embodiments, the compound of Formula I is a compound of Formula X-d, Formula X-e Formula X-f, or a pharmaceutically acceptable salt thereof:
Figure imgf000094_0002
R2 is C(RB)2C(O)NH
Figure imgf000095_0001
RB is independently selected at each occurrence from hydrogen or -CH3; R2A is phenyl, pyridyl, or bicyclo[1.1.1]pentyl each of which is optionally substituted with 1, or 2, or 3 substituents independently selected from halogen, C1-C4alkyl, haloC1-C4alkyl, C3-C6- cycloalkyl, haloC3-C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-4alkyl and -OH; R3 is C1-C4alkyl, C3-C5cycloalkyl, or C1-C4alkoxy, each of which is optionally substituted with - OH, 1-3 independently selected halogen, or C1-C4alkoxy; and each R7 is independently hydrogen, halogen, C1-4alkyl, or C1-4alkoxy. [00184] In some embodiments, the compound of Formula I is selected from one of those depicted in Table 1, Table 1a, or Table 1b, or a pharmaceutically acceptable salt thereof. Table 1, Table 1a, or 1b identifies compounds by their IUPAC name and Table 2, Table 2a, and Table 2b lists the same compounds and shows their chemical structure. In the event of any discrepancy between Table 1’s, Table 1a’s, or Table 1b’s name for a compound and Table 2's, Table 2a’s, and Table 2b’s structure for that same compound; Table 2's, Table 2a’s, and Table 2b’s compound structures will dominate and identify the compound corresponding to each respective compound number (I-#) in Table 1, Table 1a, or Table 1b. Table 1 No. IUPAC Name
Figure imgf000095_0002
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- I-1 methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-
Figure imgf000096_0001
Table 1a No. IUPAC Name
Figure imgf000096_0002
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-cyclopropyl-5-ethyl-6-(4-(4-hydroxy- I-3a 23-dihydrofuro[23-c]pyridine-5-carbonyl)piperazin-1-yl)-7-oxothiazolo[54- n- n- -
Figure imgf000097_0001
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-(2,5-dihydrofuran-3-yl)-5-ethyl-6-(4- I-15a (5-hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxothiazolo[54- - 4- - -
Figure imgf000098_0001
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-(2,5-dihydrofuran-3-yl)-5-ethyl-6-(4- I-27a (4-hydroxy-2-methoxynicotinoyl)piperazin-1-yl)-7-oxothiazolo[54-b]pyridin- - - - n-
Figure imgf000099_0001
2-(2-(dimethylamino)-5-ethyl-6-(4-(6-hydroxybenzo[d]oxazole-7- I-37a carbonyl)piperazin-1-yl)-7-oxothiazolo[54-b]pyridin-4(7H)-yl)-N-(3- - 7- 1- - )- )-
Figure imgf000100_0001
2-(2-(3,6-dihydro-2H-pyran-4-yl)-5-ethyl-6-(4-(4-hydroxy-2,3-dihydrofuro[2,3- I-47a c]pyridine-5-carbonyl)piperazin-1-yl)-7-oxothiazolo[54-b]pyridin-4(7H)-yl)-N-(3- - - -
Figure imgf000101_0001
2-(5-ethyl-6-(4-(6-hydroxybenzo[d]oxazole-7-carbonyl)piperazin-1-yl)-2-(2- I-57a methoxypyridin-4-yl)-7-oxothiazolo[54-b]pyridin-4(7H)-yl)-N-(3-
Figure imgf000102_0001
Table 1b No. IUPAC Name N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-(36-dihydro-2H-pyran-4-yl)-5-ethyl- - -
Figure imgf000103_0001
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-(1-cyclopropyl-1H-pyrazol-4-yl)-5- I-12b ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-7- - )- - - 5- 5-
Figure imgf000104_0001
N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(6-methoxypyridin-3-yl)-6-(4- I-21b (1-methyl-1H-pyrazole-4-carbonyl)piperazin-1-yl)-7-oxothiazolo[45-b]pyridin- - -
Figure imgf000105_0001
N-(3-(1,1-difluoroethyl)bicyclo[1.1.1]pentan-1-yl)-2-(2-(3,6-dihydro-2H-pyran-4- I-31b yl)-5-ethyl-6-(4-(4-hydroxy-23-dihydrofuro[23-c]pyridine-5-carbonyl)piperazin-1- - - )- - - - -
Figure imgf000106_0001
N-(3-cyanobicyclo[1.1.1]pentan-1-yl)-2-(2-(3,6-dihydro-2H-pyran-4-yl)-5-ethyl-6- I-41b (4-(4-hydroxy-23-dihydrofuro[23-c]pyridine-5-carbonyl)piperazin-1-yl)-7- - -
Figure imgf000107_0001
2-(2-(dimethylamino)-5-ethyl-6-((1S,6S)-5-(6-hydroxybenzo[d]oxazole-7- I-51b carbonyl)-25-diazabicyclo[4.2.0]octan-2-yl)-7-oxothiazolo[45-b]pyridin-4(7H)-
Figure imgf000108_0001
2-(5-ethyl-6-(4-(6-hydroxybenzo[d]oxazole-7-carbonyl)piperazin-1-yl)-2-(2- I-61b methoxypyridin-4-yl)-7-oxothiazolo[45-b]pyridin-4(7H)-yl)-N-(4-
Figure imgf000109_0001
4. Pharmaceutical compositions, methods of treatment and uses of compounds [00185] In another aspect, the present invention provides a pharmaceutical composition comprising a compound of the present invention, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier. In a further embodiment, the composition comprises at least two pharmaceutically acceptable carriers, such as those described herein. The pharmaceutical composition can be formulated for particular routes of administration such as oral administration, parenteral administration (e.g. by injection, infusion, transdermal or topical administration), and rectal administration, in particular oral administration. Topical administration may also pertain to inhalation or intranasal application. The pharmaceutical compositions of the present invention can be made up in a solid form (including, without limitation, capsules, tablets, pills, granules, powders or suppositories), or in a liquid form (including, without limitation, solutions, suspensions or emulsions). Tablets may be either film coated or enteric coated according to methods known in the art. Typically, the pharmaceutical compositions are tablets or gelatin capsules comprising the active ingredient together with one or more of: a) diluents, e.g., lactose, dextrose, sucrose, mannitol, sorbitol, cellulose and/or glycine; b) lubricants, e.g., silica, talcum, stearic acid, its magnesium or calcium salt and/or polyethylene glycol; for tablets also c) binders, e.g., magnesium aluminum silicate, starch paste, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose and/or polyvinylpyrrolidone; if desired d) disintegrants, e.g., starches, agar, alginic acid or its sodium salt, or effervescent mixtures; and e) absorbents, colorants, flavors and sweeteners. [00186] Typical approaches to solubilize compounds for parenteral administration are the optimization of the pH or the use of co-solvents (e.g. PEG300, PEG400, propylene glycol, or ethanol). If these approaches are, for any reason, not feasible, the use of surfactants may be considered (e.g. Tween® 80 or Cremophor EL®). Cyclodextrins are established as safe solubilizing agents. Compounds with a high solubility in natural oils may be solubilized in parenteral fat emulsions. [00187] There is also provided a pharmaceutical composition comprising a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, and one or more pharmaceutically acceptable carriers. Uses [00188] The compounds of Formula I of the present invention in free form or in pharmaceutically acceptable salt form, exhibit valuable pharmacological properties, e.g. WRN inhibiting properties, e.g. as indicated in vitro tests as provided in the next sections, and are therefore indicated for therapy, or for use as research chemicals, e.g. as a chemical probe, and as tool compounds. [00189] Also provided is a compound of Formula I, as described herein. Said compound can be used as a research chemical, a compound herein comprising an added biotin moiety, for example a tool compound or chemical probe, in particular for research on WRN. In another embodiment there is provided the use of a compound of Formula I, as described herein, as a research chemical, for example tool compound or chemical probe, in particular for research on WRN. [00190] There is also provided a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, for use in the treatment of cancer. Cancers that may be treated by WRN inhibition include cancers that are characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR). In particular, a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, may be useful in the treatment of a cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR). [00191] There is also provided a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, for use as a medicament. In particular, said use is: ● for the treatment of a disease that is treated by WRN inhibition, ● for the treatment of cancer, ● for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), ● for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), such as colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer, ● for the treatment of cancer that is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate and endometrial cancer, or ● for the treatment of cancer wherein the cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma, prostate cancer and ovarian serous cystadenocarcinoma. [00192] There is also provided a method of: ● modulating WRN activity in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ● inhibiting WRN in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ● treating a disorder or disease which can be treated by WRN inhibition in a subject, comprising administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ● treating cancer in a subject, comprising administering to the subject a therapeutically effective amount of the compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, ● treating cancer in a subject, comprising administering a compound of Formula I as described herein, wherein the cancer is characterized as microsatellite instability- high (MSI-H) or mismatch repair deficient (dMMR). In particular, the cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer. More particularly, the cancer characterized as microsatellite instability-high (MSI- H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate and endometrial cancer. Examples include uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma, prostate cancer and ovarian serous cystadenocarcinoma. [00193] There is also provided the use of a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof: ● in therapy, ● in the manufacture of a medicament, ● in the manufacture of a medicament for the treatment of cancer. In particular, said cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), ● in the manufacture of a medicament for treatment of a disease which may be treated by WRN inhibition, wherein in particular, the cancer is characterized by microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), for example colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer, in particular, colorectal, gastric, prostate or endometrial cancer, or uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma and ovarian serous cystadenocarcinoma. [00194] In some embodiments, the subject has or is identified as having a microsatellite instable (MSI-H) cancer, e.g., in reference to a control, e.g., a normal, subject. In one embodiment, the subject has MSI-H advanced solid tumors, a colorectal cancer (CRC), endometrial, uterine, stomach or other MSI-H cancer. In some embodiments, the subject has a colorectal (CRC), endometrial or stomach cancer, which cancer has or is identified as having a microsatellite instability (MSI-H), e.g., in reference to a control, e.g., a normal, subject. Such identification techniques are known in the art. Forms [00195] Depending on the choice of the starting materials and procedures, the compounds can be present in the form of one of the possible stereoisomers or as mixtures thereof, for example as pure optical isomers, or as stereoisomer mixtures, such as racemates and diastereoisomer mixtures, depending on the number of asymmetric carbon atoms. The present invention is meant to include all such possible stereoisomers, including racemic mixtures, diasteriomeric mixtures and optically pure forms. Optically active (R)- and (S)-stereoisomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. If the compound contains a double bond, the substituent may be E or Z configuration. If the compound contains a disubstituted cycloalkyl, the cycloalkyl substituent may have a cis- or trans-configuration. All tautomeric forms are also intended to be included. [00196] Any formula given herein is intended to represent unlabeled forms as well as isotopically labeled forms of the compounds, in addition to the deuteration specifically claimed in Formula I. Isotopically labeled compounds have structures depicted by the formulae given herein except that one or more atoms are replaced by an atom having a selected atomic mass or mass number. Isotopes that can be incorporated into compounds of the invention include, for example, isotopes of hydrogen. [00197] Further, incorporation of certain isotopes, particularly deuterium (i.e., 2H or D) may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements or an improvement in therapeutic index or tolerability. It is understood that deuterium in this context is regarded as a substituent of a compound of the present invention. The concentration of deuterium, may be defined by the isotopic enrichment factor. The term “isotopic enrichment factor” as used herein means the ratio between the isotopic abundance and the natural abundance of a specified isotope. If a substituent in a compound of this invention is denoted as being deuterium, such compound has an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium incorporation), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation). It should be understood that the term “isotopic enrichment factor” can be applied to any isotope in the same manner as described for deuterium.
[00198] Other examples of isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, and chlorine, such as 3H, 11C, 13C, 14C, 15N, 18F 3 IP, 32P, 35S, 36CI, 1231, 1241, and 1251, respectively. Accordingly it should be understood that the invention includes compounds that incorporate one or more of any of the aforementioned isotopes, including for example, radioactive isotopes, such as 3H and 14C, orthose into which non-radioactive isotopes, such as 2H and 13C are present. Such isotopically labelled compounds are useful in metabolic studies (with 14C), reaction kinetic studies (with, for example 2H or 3H), detection or imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT) including drug or substrate tissue distribution assays, or in radioactive treatment of patients. In particular, an 18F or labeled compound may be particularly desirable for PET or SPECT studies. Isotopically-labeled compounds of the present invention can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying Examples and Preparations using an appropriate isotopically-labeled reagents in place of the nonlabeled reagent previously employed.
[00199] A “compound of the present invention” or a “compound of Formula I” includes a zwitterion thereof, a non-zwitterion thereof (non-charged form), or a pharmaceutically acceptable salt of said zwitterionic or non-zwitterionic form thereof. “Zwitterion” or “zwitterionic form” means a compound containing both positive and negatively charged functional groups.
[00200] The term “cancer” refers to a disease characterized by the rapid and uncontrolled growth of aberrant cells. Cancer cells can spread locally or through the bloodstream and lymphatic system to other parts of the body. Examples of various cancers are described herein and include but are not limited to colorectal, gastric, endometrial, prostate, adrenocortical, uterine, cervical, esophageal, breast, kidney, ovarian cancer and the like.
[00201] The terms “tumor” and “cancer” are used interchangeably herein, e.g., both terms encompass solid and liquid, e.g., diffuse or circulating, tumors. As used herein, the term “cancer” or “tumor” includes premalignant, as well as malignant cancers and tumors. [00202] ‘ ‘WRN inhibitor” or “WRN helicase inhibitor” as used herein means a compound that inhibits Werner Syndrome RecQ DNA helicase (WRN). The term “WRN” as used herein refers to the protein of Werner Syndrome RecQ DNA helicase. The term “WRN” includes mutants, fragments, variants, isoforms, and homologs of full-length wild-type WRN. In one embodiment, the protein is encoded by the WRN gene (Entrez gene ID 7486; Ensembl ID ENSG00000165392). Exemplary WRN sequences are available at the Uniprot database under accession number Q 14191.
[00203J “Disease or condition mediated by WRN” includes a disease or condition, such as cancer, which is treated by WRN inhibition. In particular this may include cancers characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
[00204] “Microsatellite unstable cancer,” “microsatellite instability-high cancer,” “microsatellite high cancer” and “MSI-high cancer,” “MSIhi” and “MSI-H” when used herein, are used interchangeably, and describe cancers that have a high number of alterations in the length of simple repetitive genomic sequences within microsatellites.
[00205] The determination of MSI-H or dMMR tumor status for patients can be performed using, e.g., polymerase chain reaction (PCR) tests for MSI-H status or immunohistochemistry (IHC) tests for dMMR. Methods for identification of MSI-H or dMMR tumor status are described, e.g., in Ryan et al. Crit Rev Oncol Hematol. 2017; 116:38-57; Dietmaier and Hofstadter. Lab Invest 2001, 81 :1453-1456; and Kawakami et al. Curr Treat Options Oncol. 2015; 16(7): 30).
[00206] Microsatellite instability can be found in colorectal cancer, gastric cancer and endometrial cancer in particular, but also in adrenocortical, uterine, cervical, esophageal, breast, kidney, prostate and ovarian cancers. Examples of microsatellite high cancers include uterine corpus endometrial carcinoma, colon adenocarcinoma, stomach adenocarcinoma, rectal adenocarcinoma, adrenocortical carcinoma, uterine carcinosarcoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, esophageal carcinoma, breast carcinoma, kidney renal clear cell carcinoma and ovarian serous cystadenocarcinoma.
[00207] A cancer that has “defective mismatch repair” (dMMR) or “dMMR character” includes cancer types associated with documented MLH1, PMS2, MSH2, MSH3, MSH6, MLH3, and PMS1 mutations or epigenetic silencing, microsatellite fragile sites, or other gene inactivation mechanisms, including but not limited to cancers of the lung, breast, kidney, large intestine, ovary, prostate, upper aerodigestive tract, stomach, endometrium, liver, pancreas, haematopoietic and lymphoid tissue, skin, thyroid, pleura, autonomic ganglia, central nervous system, soft tissue, pediatric rhabdoid sarcomas, melanomas and other cancers. A cell or cancer with “defective” mismatch repair has a significantly reduced (e.g., at least about 25%, 30%, 40%, 50%, 60%, 70%, 80% or 90% decrease) amount of mismatch repair. In some cases, a cell or cancer which is defective in mismatch repair will perform no mismatch repair.
[00208] As used herein, the term “pharmaceutical composition” refers to a compound of the invention, or a pharmaceutically acceptable salt thereof, together with at least one pharmaceutically acceptable carrier, in a form suitable for oral or parenteral administration.
[00209] As used herein, the term “pharmaceutically acceptable carrier” refers to a substance useful in the preparation or use of a pharmaceutical composition and includes, for example, suitable diluents, solvents, dispersion media, surfactants, antioxidants, preservatives, isotonic agents, buffering agents, emulsifiers, absorption delaying agents, salts, drug stabilizers, binders, excipients, disintegration agents, lubricants, wetting agents, sweetening agents, flavoring agents, dyes, and combinations thereof, as would be known to those skilled in the art (see, for example, Remington The Science and Practice of Pharmacy, 22nd Ed. Pharmaceutical Press, 2013, pp. 1049-1070).
[00210] The terms “synthetic lethality,” and “synthetically lethal” are used to refer to reduced cell viability and/or a reduced rate of cell proliferation caused by a combination of mutations or approaches to cause loss of function (e.g., RNA interference or protein function inhibition) in two or more genes but not by the loss of function of only one of these genes.
[00211] The term “a therapeutically effective amount” of a compound of the present invention refers to an amount of the compound of the present invention that will elicit the biological or medical response of a subject, for example, reduction or inhibition of an enzyme or a protein activity, or ameliorate symptoms, alleviate conditions, slow or delay disease progression, or prevent a disease, etc. In some embodiments, the methods of the invention comprise administration of a therapeutically effective amount of a compound herein.
[00212] In one embodiment, the term “a therapeutically effective amount” refers to the amount of the compound of the present invention that, when administered to a subject, is effective to (1) at least partially alleviate, prevent and/or ameliorate a condition, or a disorder or a disease (i) mediated by WRN, or (ii) associated with WRN activity, or (iii) characterized by activity (normal or abnormal) of WRN; or (2) reduce or inhibit the activity of WRN.
[00213] In another embodiment, the term “a therapeutically effective amount” refers to the amount of the compound of the present invention that, when administered to a cell, or a tissue, or a non-cellular biological material, or a medium, is effective to at least partially reducing or inhibiting the activity of WRN, or reducing WRN protein levels.
[00214] As used herein, the term “subject” refers to primates (e g., humans, male or female), dogs, rabbits, guinea pigs, pigs, rats and mice. In certain embodiments, the subject is a primate, a rat or a mouse. In yet other embodiments, the subject is a human.
[00215] As used herein, the term “inhibit,” “inhibition” or “inhibiting” refers to the reduction or suppression of a given condition, symptom, or disorder, or disease, or a significant decrease in the baseline activity of a biological activity or process.
[00216] As used herein, the term “treat,” “treating” or “treatment” of any disease or disorder refers to alleviating or ameliorating the disease or disorder (i.e., slowing or arresting the development of the disease or at least one of the clinical symptoms thereof); or alleviating or ameliorating at least one physical parameter or biomarker associated with the disease or disorder, including those which may not be discernible to the patient.
[00217] As used herein, the term “prevent,” “preventing” or “prevention” of any disease or disorder refers to the prophylactic treatment of the disease or disorder; or delaying the onset or progression of the disease or disorder.
[00218] As used herein, a subject is “in need of’ a treatment if such subject would benefit biologically, medically or in quality of life from such treatment.
[00219] As used herein, the term “a,” “an,” “the” and similar terms used in the context of the present invention (especially in the context of the claims) are to be construed to cover both the singular and plural unless otherwise indicated herein or clearly contradicted by the context.
[00220] “May j oin” means j oins or does not j oin.
[00221] “May be replaced by deuterium” means is replaced by deuterium, or is not replaced by deuterium. [00222] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g. “such as”) provided herein is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention otherwise claimed.
Isomeric forms
[00223] Any asymmetric atom (e.g., carbon or the like) of the compound(s) of the present invention can be present in racemic or enantiomerically enriched, for example the (R)-, (S)- or (R, S)-configuration. In certain embodiments, each asymmetric atom has at least 50 % enantiomeric excess, at least 60 % enantiomeric excess, at least 70 % enantiomeric excess, at least 80 % enantiomeric excess, at least 90 % enantiomeric excess, at least 95 % enantiomeric excess, or at least 99 % enantiomeric excess in the (R)- or (S)- configuration. Substituents at atoms with unsaturated double bonds may, if possible, be present in cis-(Z)- or trans-(E)- form.
[00224] Accordingly, as used herein a compound of the present invention can be in the form of one of the possible stereoisomers, rotamers, atropisomers, tautomers or mixtures thereof, for example, as substantially pure geometric (cis or trans) stereoisomers, diastereomers, optical isomers (antipodes), racemates or mixtures thereof.
[00225] Any resulting mixtures of stereoisomers can be separated on the basis of the physicochemical differences of the constituents, into the pure or substantially pure geometric or optical isomers, diastereomers, racemates, for example, by chromatography and/or fractional crystallization.
[00226] Any resulting racemates of compounds of the present invention or of intermediates can be resolved into the optical antipodes by known methods, e.g., by separation of the diastereomeric salts thereof, obtained with an optically active acid or base, and liberating the optically active acidic or basic compound. In particular, a basic moiety may thus be employed to resolve the compounds of the present invention into their optical antipodes, e.g., by fractional crystallization of a salt formed with an optically active acid, e.g., tartaric acid, dibenzoyl tartaric acid, diacetyl tartaric acid, di-O,O’-p-toluoyl tartaric acid, mandelic acid, malic acid or camphor- 10-sulfonic acid. Racemic compounds of the present invention or racemic intermediates can also be resolved by chiral chromatography, e.g., high pressure liquid chromatography (HPLC) using a chiral adsorbent.
[00227] Compounds of the invention, i.e. compounds of Formula I that contain groups capable of acting as donors and/or acceptors for hydrogen bonds may be capable of forming co-crystals with suitable co-crystal formers. These co-crystals may be prepared from compounds of Formula I by known co-crystal forming procedures. Such procedures include grinding, heating, cosubliming, co-melting, or contacting in solution compounds of Formula I with the co-crystal former under crystallization conditions and isolating co-crystals thereby formed. Suitable cocrystal formers include those described in WO 2004/078163. Hence the invention further provides co-crystals comprising a compound of Formula I.
[00228] Furthermore, the compounds of the present invention, including their salts, can also be obtained in the form of their hydrates, or include other solvents used for their crystallization.
[00229] The compounds of the present invention may inherently or by design form solvates with pharmaceutically acceptable solvents (including water); therefore, it is intended that the invention embrace both solvated and unsolvated forms. The term “solvate” refers to a molecular complex of a compound of the present invention (including pharmaceutically acceptable salts thereof) with one or more solvent molecules. Such solvent molecules are those commonly used in the pharmaceutical art, which are known to be innocuous to the recipient, e.g., water, ethanol, and the like. The term “hydrate” refers to the complex where the solvent molecule is water.
Dosage Forms
[00230] The pharmaceutical composition or combination of the present invention may, for example, be in unit dosage of about 1-1000 mg of active ingredient(s) for a subject of about 50-70 kg-
Combinations
[00231] “Combination” refers to either a fixed combination in one dosage unit form, or a combined administration where a compound of Formula I, or a pharmaceutically acceptable salt thereof, and a combination partner (e.g. another drug as explained below, also referred to as “therapeutic agent” or “co-agent”) may be administered independently at the same time or separately within time intervals, especially where these time intervals allow that the combination partners show a cooperative, e.g. synergistic effect. The single components may be packaged in a kit or separately. One or both of the components (e.g., powders or liquids) may be reconstituted or diluted to a desired dose prior to administration. The terms “co-administration” or “combined administration” or the like as utilized herein are meant to encompass administration of the selected combination partner to a single subject in need thereof (e.g. a patient), and are intended to include treatment regimens in which the agents are not necessarily administered by the same route of administration or at the same time. The term “pharmaceutical combination” as used herein means a product that results from the mixing or combining of more than one therapeutic agent and includes both fixed and non-fixed combinations of the therapeutic agents. The term “fixed combination” means that the therapeutic agents, e.g. a compound of the present invention and a combination partner, are both administered to a patient simultaneously in the form of a single entity or dosage.
[00232] The term “non-fixed combination” means that the therapeutic agents, e.g. a compound of the present invention and a combination partner, are both administered to a patient as separate entities either simultaneously, concurrently or sequentially with no specific time limits, wherein such administration provides therapeutically effective levels of the two compounds in the body of the patient. The latter also applies to cocktail therapy, e.g. the administration of three or more therapeutic agents.
[00233] The combinations described herein can include a compound of Formula I and one or more additional therapeutic agents, e.g., one or more anti-cancer agents, cytotoxic or cytostatic agents, hormone treatment, vaccines, and/or other immunotherapies. In other embodiments, the combination is further administered or used in combination with other therapeutic treatment modalities, including surgery, radiation, cryosurgery, and/or thermotherapy. Such combination therapies may advantageously utilize lower dosages of the administered therapeutic agents, thus avoiding possible toxicities or complications associated with the treatment.
[00234] There is also provided a combination comprising a compound of Formula I as described herein, or a pharmaceutically acceptable salt thereof, as described herein, and one or more additional therapeutically active agents. The additional therapeutic agent is, for example, a chemical compound, peptide, antibody, antibody fragment or nucleic acid, which is therapeutically active or enhances the therapeutic activity when administered to a patient in combination with a compound of the present disclosure. In particular, an additional therapeutically active agent is:
• an anti-cancer agent,
• a chemotherapy,
• liposome injection (DaunoXome®), dexamethasone, docetaxel (Taxotere®), doxorubicin hydrochloride (Adriamycin®, Rubex®), etoposide (Vepesid®), fludarabine phosphate (Fludara®), 5-fluorouracil (Adrucil®, Efudex®), flutamide (Eulexin®), tezacitibine, Gemcitabine (difluorodeoxycitidine), hydroxyurea (Hydrea®), Idarubicin (Idamycin®), ifosfamide (IFEXO), irinotecan
(Camptosar®), L-asparaginase (ELSPAR®), leucovorin calcium, melphalan (Alkeran®), 6-mercaptopurine (Purinethol®), methotrexate (Folex®), mitoxantrone (Novantrone®), mylotarg, paclitaxel (Taxol®), phoenix
(Yttrium90/MX-DTPA), pentostatin, polifeprosan 20 with carmustine implant (Gliadel®), tamoxifen citrate (Nolvadex®), teniposide (Vumon®), 6-thioguanine, thiotepa, tirapazamine (Tirazone®), topotecan hydrochloride for injection (Hycamptin®), vinblastine (Velban®), vincristine (Oncovin®), and vinorelbine (Navelbine®), in particular fluorouracil (5-FU) and irinotecan (Camptosar®).
• a PD-1 inhibitor,
• an anti -PD-1 antibody molecule,
• spartalizumab, or
• tislelizumab (BGB-A317, Beigene).
[00235] In certain embodiments, the additional therapeutically active agent is:
• a chemotherapy selected from anastrozole (Arimidex®), bicalutamide (Casodex®), bleomycin sulfate (Blenoxane®), busulfan (Myleran®), busulfan injection (Busulfex®), capecitabine (Xeloda®), N4-pentoxycarbonyl-5-deoxy-5-fluorocytidine, carboplatin (Parapl atin®), carmustine (BiCNU®), chlorambucil (Leukeran®), cisplatin (Platinol®), cladribine (Leustatin®), cyclophosphamide (Cytoxan® or Neosar®), cytarabine, cytosine arabinoside (Cytosar-U®), cytarabine liposome injection (DepoCyt®), dacarbazine (DTIC-Dome®), dactinomycin (Actinomycin D, Cosmegan), daunorubicin hydrochloride (Cerubidine®), daunorubicin citrate, or
• a PD-1 inhibitor selected from spartalizumab (Novartis), nivolumab (Bristol-Myers Squibb), pembrolizumab (Merck & Co), pidilizumab (CureTech), MED 10680 (Medimmune), cemiplimab (REGN2810, Regeneron), dostarlimab (TSR-042, Tesaro), PF- 06801591 (Pfizer), tislelizumab (BGB-A317, Beigene), BGB-108 (Beigene), INCSHR1210 (Incyte), balstilimab (AGEN2035, Agenus), sintilimab (InnoVent), toripalimab (Shanghai Junshi Bioscience), camrelizumab (Jiangsu Hengrui Medicine Co.), AMP -224 (Amplimmune), penpulimab (Akeso Biopharma Inc), zimberelimab (Arcus Biosciences Inc), and prolgolimab (Biocad Ltd). In a further embodiment, the additional therapeutically active agent is the chemotherapy irinotecan (Camptosar®).
[00236] In another embodiment, the additional therapeutically active agent is an inhibitor of PD-1, e g., human PD-1. In another embodiment, the immunomodulator is an inhibitor of PD-L1, e g., human PD-L1. In one embodiment, the inhibitor of PD-1 or PD-L1 is an antibody molecule to PD-1 or PD-L1. In another embodiment, the additional therapeutically active agent is an anti- PD-1 antibody molecule.
[00237] In a further embodiment, the PD-1 inhibitor is an anti-PD-1 antibody molecule as described in US 2015/0210769, published on July 30, 2015, entitled “Antibody Molecules to PD- 1 and Uses Thereof.”
[00238] In another embodiment, there is provided a combination of a compound of Formula I or a pharmaceutically acceptable salt thereof, and a chemotherapy, and a PD-1 inhibitor. In particular, the chemotherapy and PD-1 inhibitor are selected from those described above. In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered at a flat dose of between about 100 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 100 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 100 mg to about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 100 mg to about 300 mg. In some embodiments, the PD- 1 inhibitor is administered at a dose of between about 100 mg to about 200 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 200 mg to about 300 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 300 mg to about 600 mg. In some embodiments, the PD- 1 inhibitor is administered at a dose of between about 300 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 300 mg to about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 400 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 400 mg to about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 500 mg to about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 600 mg to about 700 mg. In some embodiments, the PD- 1 inhibitor is administered at a dose of between about 700 mg to about 800 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 800 mg to about 900 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of between about 900 mg to about 1000 mg.
[00239] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered at a flat dose of about 100 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 200 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 300 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 400 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 500 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 600 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 700 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 800 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 900 mg. In some embodiments, the PD-1 inhibitor is administered at a dose of about 1000 mg.
[00240] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered once every ten weeks. In some embodiments, the PD-1 inhibitor is administered once every nine weeks. In some embodiments, the PD-1 inhibitor is administered once every eight weeks. In some embodiments, the PD-1 inhibitor is administered once every seven weeks. In some embodiments, the PD-1 inhibitor is administered once every six weeks. In some embodiments, the PD-1 inhibitor is administered once every five weeks. In some embodiments, the PD-1 inhibitor is administered once every four weeks. In some embodiments, the PD-1 inhibitor is administered once every three weeks. In some embodiments, the PD-1 inhibitor is administered once every two weeks. In some embodiments, the PD-1 inhibitor is administered once every week.
[00241J In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered intravenously.
[00242] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered over a period of about 20 minutes to 40 minutes (e.g., about 30 minutes). In some embodiments, the PD- 1 inhibitor is administered over a period of about 30 minutes. In some embodiments, the PD-1 inhibitor is administered over a period of about an hour. In some embodiments, the PD-1 inhibitor is administered over a period of about two hours. In some embodiments, the PD-1 inhibitor is administered over a period of about three hours. In some embodiments, the PD-1 inhibitor is administered over a period of about four hours. In some embodiments, the PD-1 inhibitor is administered over a period of about five hours. In some embodiments, the PD-1 inhibitor is administered over a period of about six hours.
[00243] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose between about 300 mg to about 500 mg (e.g., about 400 mg), intravenously, once every four weeks. In some embodiments, the PD-1 inhibitor is administered at a dose between about 200 mg to about 400 mg (e.g., about 300 mg), intravenously, once every three weeks. In some embodiments, tislelizumab is administered at a dose of 400 mg, once every four weeks. In some embodiments, tislelizumab is administered at a dose of 300 mg, once every three weeks.
[00244] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose between about 300 mg to about 500 mg (e.g., about 400 mg), intravenously, over a period of about 20 minutes to about 40 minutes (e.g., about 30 minutes), once every two weeks. In some embodiments, the PD-1 inhibitor is administered at a dose between about 200 mg to about 400 mg (e g., about 300 mg), intravenously, over a period of about 20 minutes to about 40 minutes (e.g., about 30 minutes), once every three weeks. [00245] In some embodiments, the PD-1 inhibitor (e.g., tislelizumab) is administered at a dose of about 100 mg per week. For example, if a 10-week dose is given to a patient, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 1000 mg. If a 9-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 900 mg. If an 8-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 800 mg. If a 7-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 700 mg. If a 6-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 600 mg. If a 5-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 500 mg. If a 4-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 400 mg. If a 3-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 300 mg. If a 2-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 200 mg. If a 1-week dose is given, then the PD-1 inhibitor (e.g., tislelizumab) can be given at 100 mg.
[00246] For example, if an anti-PD-1 antibody, such as tislelizumab is used, it can be administered at a dose of 200 mg as an intravenous infusion, once every three weeks. Alternatively, tislelizumab can be administered at a dose of 300 mg as an intravenous infusion, once every four weeks. If an anti-PD-1 antibody, such as tislelizumab is used, it can be administered at a dose of 300 mg as an intravenous infusion, once every three weeks. Alternatively, tislelizumab can be administered at a dose of 400 mg as an intravenous infusion, once every four weeks.
[00247] The above-mentioned compounds, which can be used in combination with a compound of the present invention, can be prepared and administered as described in the art, such as in the documents cited above.
[00248] In one embodiment, the invention provides a product comprising a compound of the present invention and at least one other therapeutic agent as a combined preparation for simultaneous, separate or sequential use in therapy. In one embodiment, the therapy is the treatment of a disease or condition mediated by WRN. Products provided as a combined preparation include a composition comprising the compound of Formula I and the other therapeutic agent(s) together in the same pharmaceutical composition, or the compound of the present invention and the other therapeutic agent(s) in separate form, e.g. in the form of a kit.
[00249] In one embodiment, the invention provides a kit comprising two or more separate pharmaceutical compositions, at least one of which contains a compound of the present invention. In one embodiment, the kit comprises means for separately retaining said compositions, such as a container, divided bottle, or divided foil packet. An example of such a kit is a blister pack, as typically used for the packaging of tablets, capsules and the like.
[00250] The kit of the invention may be used for administering different dosage forms, for example, oral and parenteral, for administering the separate compositions at different dosage intervals, or for titrating the separate compositions against one another. To assist compliance, the kit of the invention typically comprises directions for administration.
[00251] In the combination therapies of the invention, the compound of the present invention and the other therapeutic agent may be manufactured and/or formulated by the same or different manufacturers. Moreover, the compound of the present invention and the other therapeutic may be brought together into a combination therapy: (i) prior to release of the combination product to physicians (e g. in the case of a kit comprising the compound of the present invention and the other therapeutic agent); (ii) by the physician themselves (or under the guidance of the physician) shortly before administration; (iii) in the patient themselves, e.g. during sequential administration of the compound of the present invention and the other therapeutic agent.
[00252] Accordingly, the invention provides the use of a compound of the present invention for treating a disease or condition mediated by WRN, wherein the medicament is prepared for administration with another therapeutic agent. The invention also provides the use of another therapeutic agent for treating a disease or condition mediated by WRN, wherein the medicament is administered with a compound of the present invention.
[00253] The invention also provides a compound of the present invention for use in treating a disease or condition mediated by WRN, wherein the compound of the present invention is prepared for administration with another therapeutic agent. The invention also provides another therapeutic agent for use in treating a disease or condition mediated by WRN, wherein the other therapeutic agent is prepared for administration with a compound of the present invention. The invention also provides a compound of the present invention for use in treating a disease or condition mediated by WRN, wherein the compound of the present invention is administered with another therapeutic agent. The invention also provides another therapeutic agent for use in a method of treating a disease or condition mediated by WRN, wherein the other therapeutic agent is administered with a compound of the present invention. [00254] The invention also provides the use of a compound of the present invention for treating a disease or condition mediated by WRN, wherein the patient has previously (e.g. within 24 hours) been treated with another therapeutic agent. The invention also provides the use of another therapeutic agent for treating a disease or condition mediated by WRN, wherein the patient has previously (e.g. within 24 hours) been treated with compound of the present invention.
5. General synthetic methods of producing compounds of the disclosure
[00255] Compounds of the present invention can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying synthetic Scheme 1 .
[00256] The appropriate halothiazole may undergo nucleophilic aromatic substitution with a protected amine as shown in Step 1. Deprotonation of butan-2-one to react with ester B to form 1,3-ketone C which may be brominated to form D and said bromine displaced with a nucleophile Ring A surrogate to produce E. Bicyclic heterocycle F is produced via intramolecular condensation reaction of E. Protecting group chemistry produces G then the R2 substituent addition to the compound is initiated by reacting G with tert-butyl 2-bromoacetate to produce Intermediate-7. R1 is then attached using a boronic acid thereof by cross-coupling Intermediate-7 with said boronic acid to produce H. Deprotections followed by amide forming reactions may be used to finish adding substituents R4 and R2 to the compound as shown in Steps 9-13, to arrive at compounds of the disclosure such as 1-2.
Scheme 1: General synthetic methods of producing [4,5-b]pyridin-4(7H) compounds of the disclosure
Figure imgf000128_0001
Figure imgf000129_0001
Figure imgf000130_0001
[00257] Those having ordinary skill in the art will be able to adapt such synthetic procedures to afford variably substituted compounds of Formula I for synthesis of the compounds of the disclosure.
EXAMPLES
[00258] As depicted in the Examples below, in certain exemplary embodiments, compounds are prepared according to the procedures provided herein. It will be appreciated that, although the methods depict the synthesis of certain compounds of the present disclosure, the methods, and other methods known to one of ordinary skill in the art, can be applied to all compounds and subclasses and species of each of these compounds, as described herein.
List of abbreviations:
H2O: water
ACN: acetonitrile
THF : tetrahydrofuran
FA: formic acid
ISfeSCU: sodium sulfate
EtOAc: ethyl acetate
HC1: hydrochloric acid
DCM: dichloromethane pH: potential of hydrogen
BOC2O: di -tert-butyl di carb onat
POCh: phosphorus oxychloride
EDCI: N-(3-dimethylaminopropyl)-N’ -ethylcarbodiimide hydrochloride LCMS: Liquid chromatography–mass spectrometry HPLC: High-performance liquid chromatography NH4Cl: ammonium chloride K3PO4: tripotassium phosphate TFA: trifluoroacetic acid NBS: N-bromosuccinimide DIEA: N,N-diisopropylethylamine Pd(dppf)2Cl2-CH2Cl2:1,1’-bis(diphenylphosphino)ferrocene-palladium(II)dichloride dichloromethane complex TsOH: 4-methylbenzenesulfonic acid DMSO-d6: deuterated dimethyl sulfoxide NMP: N-methyl-2-pyrrolidone DBU: 1,8-diazabicyclo[5.4.0]undec-7-ene LiHMDS: Lithium hexamethyldisilazide Prep-TLC: preparative thin layer chromatography s: singlet m: multiplet d: doublet dq: doublet of quartets t: triplet br: broad N: normality eq: equivalent M: molar concentration PE: Petroleum ether aq.: aqueous TEA: triethylamine AcOH: acetic acid K2CO3: potassium carbonate NaOH: sodium hydroxide Pd/C: palladium on carbon HBr: hydrobromic acid AIBN: 2,2'-azobis(2-methylpropionitrile) CCl4: carbon tetrachloride MeMgBr: methylmagnesium bromide CO: carbon monoxide HI: hydroiodic acid Ts: (4-methylphenyl)sulfonyl group MeOH: methanol MeOD: deuterated methanol Pd(dppf)Cl2: 1,1'-bis(diphenylphosphino)ferrocene palladium dichloride CDCl3: deuterated chloroform Boc: tert-butyloxycarbonyl PMB: 4-methoxybenzyl MgCl2: Magnesium chloride anhydrous NaHS: sodium sulfanide DMSO-d6: deuterated dimethylsulfoxide Tf2O: Trifluoromethanesulfonic anhydride ppm: parts per million NH4HCO3: ammonium bicarbonate HATU: 2-(7-azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate DMF: N,N-dimethylformamide Example 1: Synthesis of Compound of the Disclosure [00259] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[5,4- b]pyridin-4(7H)-yl)acetamide (I-1)
Figure imgf000133_0001
-(5- hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetamide [00261] To a solution of 5-hydroxy-6-methylpyrimidine-4-carboxylic acid (46 mg, 0.30 mmol, 6.0 eq) in pyridine (0.4 mL) was added EDCI (57 mg, 0.30 mmol, 6.0 eq) and the mixture was stirred at room temperature for 0.5 h. A solution of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5- ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin-4(7H)- yl)acetamide hydrochloride (Intermediate-3) (30 mg, 49 µmol, 1.0 eq) in pyridine (0.3 mL) was added and the reaction mixture was stirred at 60 °C overnight. The reaction mixture concentrated in vacuo and purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. LCMS: 743.4 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ ppm 10.46 (s, 1H), 10.24 (s, 1H), 8.58 (s, 1H), 8.33 (d, 1H), 8.12 (d, 1H), 7.99 (d, 1H), 7.73 (br d, 1H), 7.58 - 7.44 (m, 1H), 7.25 (s, 1H), 5.42 - 5.28 (m, 2H), 4.57 - 4.47 (m, 1H), 3.92 (s, 3H), 3.80 - 3.67 (m, 2H), 3.55 - 3.42 (m, 1H), 3.10 - 2.91 (m, 4H), 2.79 - 2.72 (m, 1H), 2.62 - 2.55 (m, 1H), 2.45 (s, 3H), 1.19 (br t, 3H). [00262] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[4,5- b]pyridin-4(7H)-yl)acetamide (I-2)
Figure imgf000134_0001
4-(5- hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7- oxothiazolo[4,5-b]pyridin-4(7H)-yl)acetamide [00264] To a solution of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxo-6-(piperazin-1-yl)thiazolo[4,5-b]pyridin-4(7H)-yl)acetamide hydrochloride (Intermediate-10) (100 mg, 165 μmol, 1.0 eq) in pyridine (2 mL) was added 5- hydroxy-6-methylpyrimidine-4-carboxylic acid (102 mg, 659 μmol, 4.0 eq) and EDCI (126 mg, 659 μmol, 4.0 eq), the resulting mixture was stirred at room temperature for 3 h and then concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. [00265] LCMS: 744.1 [M+H]+. [00266] 1H NMR (400 MHz, DMSO-d6) δ ppm 10.46 (s, 1H), 10.23 (br d, 1H), 8.58 (s, 1H), 8.36 (d, 1H), 8.04 (d, 1H), 7.97 (d, 1H), 7.71 (br d, 1H), 7.61 (dd, 1H), 7.47 (s, 1H), 5.59 (br s, 2H), 4.52 (br d, 1H), 3.92 (s, 3H), 3.81 - 3.65 (m, 2H), 3.57 - 3.45 (m, 1H), 3.29 - 3.19 (m, 1H), 3.17 - 2.91 (m, 3H), 2.78 (br d, 1H), 2.66 - 2.56 (m, 1H), 2.45 (s, 3H), 1.23 (br t, 3H). [00267] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(2-(3,6-dihydro-2H-pyran-4- yl)-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4- b]pyridin-4(7H)-yl)acetamide (I-3)
Figure imgf000135_0001
y y y , y -2H- pyran-4-yl)-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetamide [00269] To a solution of 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide (Intermediate-11) (15 mg, 21 μmol, 1.0 eq) and (3,6-dihydro- 2H-pyran-4-yl)boronic acid (4 mg, 31 μmol, 1.5 eq) in 1,4-dioxane (1 mL) and H2O (0.2 mL) was added Pd(dppf)Cl2 (2 mg, 2 μmol, 0.1 eq) and KOAc (4 mg, 42 μmol, 2.0 eq), the resulting mixture was stirred at 80 °C for 2 h under N2 atmosphere. The reaction mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL). The organic layer was washed with brine (20 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. [00270] LCMS: 718.1 [M+H]+. [00271] 1H NMR (400 MHz, CDCl3) δ ppm 8.58 (s, 1H), 8.49 (d, 1H), 8.33 (d, 1H), 7.65 (s, 1H), 7.57 (d, 1H), 6.52 (s, 1H), 5.67 - 5.49 (m, 1H), 5.00 (s, 2H), 4.85 - 4.69 (m, 1H), 4.30 (d, 2H), 4.09 - 4.03 (m, 2H), 3.86 (m, 2H), 3.50 (m, 1H), 3.16 - 3.01 (m, 3H), 2.88 - 2.80 (m, 4H), 2.57 (s, 3H), 1.33 - 1.28 (t, 3H). [00272] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxo-2-(pyrrolidin-1-yl)thiazolo[5,4-b]pyridin- 4(7H)-yl)acetamide (I-4)
Figure imgf000136_0001
- methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxo-2-(pyrrolidin-1-yl)thiazolo[5,4-b]pyridin- 4(7H)-yl)acetamide [00273] To a solution of 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide (Intermediate-11) (50 mg, 49 μmol, 1.0 eq) and pyrrolidine (4 mg, 59 μmol, 1.2 eq) in DMF (0.5 mL) was added DIEA (19 mg, 0.15 mmol, 3.0 eq) and the resulting mixture was stirred at 50 °C for 1 h. The reaction mixture was filtered and the filtrate was concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. [00274] LCMS: 705.2 [M+H]+. [00275] 1H NMR (400 MHz, CDCl3) δ ppm 12.00 (s, 1H), 9.29 - 8.97 (m, 1H), 8.54 (s, 1H), 8.43 (d, 1H), 7.61 (s, 1H), 7.53 (br d, 1H), 5.63 - 5.46 (m, 1H), 5.03 (br s, 2H), 4.85 - 4.64 (m, 1H), 4.16 - 3.97 (m, 2H), 3.54 - 3.26 (m, 5H), 3.04 (br d, 3H), 2.88 - 2.66 (m, 2H), 2.55 (s, 3H), 2.04 - 1.92 (m, 4H), 1.23 (br t, 3H). [00276] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(4-hydroxy-2- methoxynicotinoyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[5,4-b]pyridin- 4(7H)-yl)acetamide (I-5)
Figure imgf000137_0001
(4- hydroxy-2-methoxynicotinoyl)piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[5,4- b]pyridin-4(7H)-yl)acetamide [00278] To a solution of 4-hydroxy-2-methoxynicotinic acid (17 mg, 99 μmol, 2.0 eq) and N- (2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin- 1-yl)thiazolo[5,4-b]pyridin-4(7H)-yl)acetamide hydrochloride (Intermediate-3) (30 mg, 49 μmol, 1.0 eq) in DMF (1 mL) was added HATU (38 mg, 99 μmol, 2.0 eq) and DIEA (19 mg, 0.15 mmol, 3.0 eq), and the resulting mixture was stirred at room temperature for 1 h. The reaction mixture was quenched by H2O (5 mL) and extracted with EtOAc (5 mL * 3). The combined organic layers were washed with brine (5 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. [00279] LCMS: 758.3 [M+H]+. [00280] 1HNMR: (400 MHz, DMSO-d6) δ ppm 10.96 (s, 1H), 10.47 (s, 1H), 8.33 (d, 1H), 8.11 (d, 1H), 7.98 (s, 1H), 7.89 (br d, 1H), 7.72 (br d, 1H), 7.52 - 7.46 (m, 1H), 7.25 (s, 1H), 6.57 (t, 1H), 5.34 (br s, 2H), 4.51 (br d, 1H), 3.92 (s, 3H), 3.78 (s, 3H), 3.77 - 3.59 (m, 2H), 3.18 (br d, 2H), 3.04 - 2.97 (m, 2H), 2.86 (br s, 1H), 2.72 - 2.65 (m, 1H), 2.55 (br d, 1H), 1.18 (br t, 3H). [00281] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxo-2-(prop-1-en-2-yl)thiazolo[5,4-b]pyridin- 4(7H)-yl)acetamide (I-6)
Figure imgf000138_0001
ep . y es s o - -c o o- - uo o e y p e y - - -e y - - 4-(5- hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-7-oxo-2-(prop-1-en-2-yl)thiazolo[5,4- b]pyridin-4(7H)-yl)acetamide [00283] To a solution of 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide (Intermediate-11) (70 mg, 98 μmol, 1.0 eq) in 1,4-dioxane (1 mL) and H2O (0.2 mL) was added potassium trifluoro(prop-1-en-2-yl)borate (22 mg, 0.15 mmol, 1.5 eq), Pd(dppf)Cl2 (7 mg, 9.8 μmol, 0.1 eq) and K3PO4 (42 mg, 0.20 mmol, 2.0 eq). The resulting mixture was stirred at 80 °C for 4 h under N2 atmosphere. After being cooled to room temperature, the reaction mixture was concentrated under reduced pressure and then purified by reverse phase HPLC (C18 column, H2O (10 mmol/L NH4HCO3)-ACN) to afford the title compound. [00284] LCMS: 676.3 [M+H]+. [00285] 1H NMR (400 MHz, MeOD) δ ppm 8.16 (d, 1H), 8.10 (s, 1H), 7.83 (s, 1H), 7.63 (br d, 1H), 5.84 (s, 1H), 5.52 (d, 1H), 5.31 (br d, 2H), 4.67 (br s, 2H), 3.96 - 3.84 (m, 2H), 3.65 - 3.57 (m, 1H), 3.50 - 3.44 (m, 1H), 3.14 (br d, 2H), 2.86 (br d, 1H), 2.70 (br d, 1H), 2.41 (s, 3H), 2.25 (s, 3H), 1.29 (br t, 3H). [00286] Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(1-methyl-1H-pyrazol-4-yl)-7-oxothiazolo[5,4- b]pyridin-4(7H)-yl)acetamide (I-7)
Figure imgf000139_0001
-(5- hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1-yl)-2-(1-methyl-1H-pyrazol-4-yl)-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetamide [00288] To a solution of 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide (Intermediate-11) (70 mg, 98 μmol, 1.0 eq) and 1-methyl-4- (4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole (31 mg, 0.15 mmol, 1.5 eq) in 1,4- dioxane (1 mL) and H2O (0.2 mL) was added Pd(dppf)Cl2 (7 mg, 10 μmol, 0.1 eq) and K3PO4 (42 mg, 0.20 mmol, 2.0 eq). The resulting mixture was stirred at 80 °C for 4 h under N2 atmosphere. The reaction mixture was cooled to room temperature and concentrated under reduced pressure. The residue was purified by reverse phase HPLC (C18 column, H2O (10 mmol/L NH4HCO3)- ACN) to afford the title compound. [00289] LCMS: 716.1 [M+H]+. [00290] 1H NMR (400 MHz, DMSO-d6) δ 10.73 (s, 1H), 8.53 - 8.42 (m, 1H), 8.40 (s, 1H), 8.11 (d, 1H), 7.97 (s, 1H), 7.95 (s, 1H), 7.72 (br d, 1H), 5.27 (br s, 2H), 4.62 - 4.39 (m, 1H), 3.89 (s, 3H), 3.81 - 3.68 (m, 2H), 3.65 - 3.45 (m, 2H), 3.04 - 2.89 (m, 3H), 2.72 (br d, 1H), 2.56 (br d, 1H), 2.41 (s, 3H), 1.17 (br t, 3H). [00291] Synthesis of 2-(5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4-carbonyl)piperazin-1- yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[4,5-b]pyridin-4(7H)-yl)-N-(3- (trifluoromethyl)bicyclo[1.1.1]pentan-1-yl)acetamide (I-8)
Figure imgf000140_0001
piperazin-1-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[4,5-b]pyridin-4(7H)-yl)-N-(3- (trifluoromethyl)bicyclo[1.1.1]pentan-1-yl)acetamide [00293] To a stirred solution of 2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-1- yl)thiazolo[4,5-b]pyridin-4(7H)-yl)-N-(3-(trifluoromethyl)bicyclo[1.1.1]pentan-1-yl) acetamide hydrochloride (Intermediate-14) (80 mg, 142 μmol, 1.0 eq) and 5-hydroxy-6-methylpyrimidine- 4-carboxylic acid (Intermediate-6) (26 mg, 170 μmol, 1.2 eq) in pyridine (5 mL) was added EDCI (82 mg, 426 μmol, 3.0 eq) at room temperature under N2 atmosphere. The resulting mixture was degassed with N2 for three times, then stirred for 4 h at room temperature under N2 atmosphere. The residue was purified by flash silica gel chromatography (Eluent of DCM/MeOH) and concentrated under reduced pressure to give a residue. The residue was purified by reverse Phase HPLC (C18 column, water (10mmol/L NH4HCO3)-ACN) to afford the title compound. [00294] 1H NMR (400 MHz, DMSO-d6) δ ppm 10.27 (s, 0.577H, partially deuterated), 9.32 (s, 1H), 8.53 (s, 1H), 8.40 (d, 1H), 7.59 (d, 1H), 7.44 (s, 1H), 5.16 (s, 2H), 4.51 (d, 1H), 3.95 (s, 3H), 3.78 – 3.65 (m, 2H), 3.48 (d, 1H), 3.27 – 3.20 (m, 1H), 3.04 – 2.90 (d, 3H), 2.77 (d, 1H), 2.58 (d, 1H), 2.44 (s, 3H), 2.25 (s, 6H), 1.18 (t, 3H). [00295] LCMS: 699.2 [M+H]+. Table 2 Method (Mass_ (Retention_ ]
Figure imgf000140_0002
Figure imgf000141_0001
Figure imgf000142_0001
[00296] As can be appreciated by those skilled in the art compounds of Table 2a may be accessed through Intermediate 1. Table 2a Mass_ No. Theoretical
Figure imgf000143_0001
Figure imgf000144_0001
Figure imgf000145_0001
Figure imgf000146_0001
Figure imgf000147_0001
Figure imgf000148_0001
Figure imgf000149_0001
Figure imgf000150_0001
Figure imgf000151_0001
Figure imgf000152_0001
Figure imgf000153_0001
Figure imgf000154_0001
Figure imgf000155_0001
Figure imgf000156_0001
Figure imgf000157_0002
[00297] As can be appreciated by those skilled in the art compounds of Table 2b may be accessed through Intermediate-7.
Table 2b
Figure imgf000157_0001
Figure imgf000158_0001
Figure imgf000159_0001
Figure imgf000160_0001
Figure imgf000161_0001
Figure imgf000162_0001
Figure imgf000163_0001
Figure imgf000164_0001
Figure imgf000165_0001
Figure imgf000166_0001
Figure imgf000167_0001
Figure imgf000168_0001
Figure imgf000169_0001
Figure imgf000170_0001
Figure imgf000171_0001
Figure imgf000172_0001
Figure imgf000173_0001
LCMS methods
LCMS 1
Instrument Shimadzu LCMS-2020
Stationary Phase HALO C18 3.0X30mm, S.O^m Mode Binary Gradient Mobile Phase A 0.0375% TFA in water (v/v) Mobile Phase B 0.01875% TFA in Acetonitrile (v/v) Gradient 5 to 95% B in 0.5min, 95% B for 0.3min, 95 to 5% B in 0.25min Flow Rate 1.5 mL/min Column Temperature 50 °C Column 3.0X30mm, 5.0µm LCMS 2 Instrument Shimadzu LCMS‐2020 Stationary Phase Kinetex EVO C182.1X30mm, 5µm Mode Binary Gradient Mobile Phase A 0.025% NH3·H2O in water (v/v) Mobile Phase B Acetonitrile Gradient 5% to 95% B in 0.8 min, hold 95% B for 0.4 min, 95% to 5% B in 0.01 min, hold 5% B for 0.34 min Flow Rate (mL/min) 1.5 Column Temperature (°C) 40 Column Dimensions 2.1X30mm, 5µm LCMS 3 Instrument Shimadzu LCMS‐2020 Stationary Phase Shim-pack Scepter C18, 33*3.0mm, 3.0µm Mode Binary Gradient Mobile Phase A water/5mM NH4HCO3 Mobile Phase B Acetonitrile Gradient 0% to 90% B in 1.2 min, hold 90% B in 0.6 min Flow Rate (mL/min) 1.5 Column Temperature (°C) 40 Column Dimensions 33 x 3.0mm, 3.0µm Intermediate-1: tert-butyl 4-(2-bromo-4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-7-oxo-4,7- dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-1-carboxylate
Figure imgf000175_0001
[00298] To a solution of ethyl 5-bromothiazole-4-carboxylate (50.00 g, 211.8 mmol, 1.0 eq) in NMP (500 mL) was added DBU (48.36 g, 317.7 mmol, 1.5 eq) and the mixture was stirred at 80 °C for 2 h. The reaction mixture was cooled to room temperature, and saturated aq. NH4Cl solution (1000 mL) was added. The mixture was extracted with EtOAc (500 mL * 3), and the combined organic layers were washed with brine 300 mL, dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. LCMS: 413.2 [M+H]+. Step 2. Synthesis of ethyl (Z)-1-(5-(bis(4-methoxybenzyl)amino)thiazol-4-yl)-3-hydroxypent-2- en-1-one [00299] To a solution of butan-2-one (437 mg, 6.06 mmol, 2.5 eq) in THF (3 mL) was added a 1 M solution of LiHMDS (6.06 mL, 6.06 mmol, 2.5 eq) in THF at 0 °C and the solution was stirred at 30 °C for 0.5 h. A solution of ethyl 5-(bis(4-methoxybenzyl)amino)thiazole-4-carboxylate (1.00 g, 2.42 mmol, 1.0 eq) in THF (6 mL) was added dropwise at 30 °C. The mixture was heated to 60 °C and stirred at 60 °C for 1 h. The reaction mixture was quenched by saturated aq. NH4Cl solution (200 mL) and extracted with EtOAc (50 mL*2). The combined organic layers were dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. LCMS: 439.1 [M+H]+. Step 3. Synthesis of 1-(5-(bis(4-methoxybenzyl)amino)-2-bromothiazol-4-yl)-2-bromopentane- 1,3-dione [00300] To a solution of (Z)-1-(5-(bis(4-methoxybenzyl)amino)thiazol-4-yl)-3-hydroxypent-2- en-1-one (4.60 g, 10.5 mmol, 1.0 eq) in DCM (50 mL) was added TsOH-H2O (18 mg, 0.11 mmol, 0.01 eq) and NBS (3.73 g, 21.0 mmol, 2.0 eq) at 0 °C and the mixture was stirred at room temperature for 0.5 h. H2O (50 mL) was added and the organic phase was separated and washed with H2O (50 mL). The organic phase was dried over anhydrous Na2SO4, filtered and the filtrate was concentrated to afford the title compound, which was used into the next step without further purification. LCMS: 596.9 [M+H]+. Step 4. Synthesis of tert-butyl 4-(1-(5-(bis(4-methoxybenzyl)amino)-2-bromothiazol-4-yl)-1,3- dioxopentan-2-yl)piperazine-1-carboxylate [00301] To a solution of 1-(5-(bis(4-methoxybenzyl)amino)-2-bromothiazol-4-yl)-2- bromopentane-1,3-dione (6.00 g, 10.1 mmol, 1.0 eq) in THF (60 mL) was added tert-butyl piperazine-1-carboxylate (5.62 g, 30.2 mmol, 3.0 eq) and DIEA (3.90 g, 30.2 mmol, 3.0 eq), and the mixture was stirred at room temperature for 0.5 h. The reaction mixture was diluted with H2O (50 mL), extracted with EtOAc (50 mL*2). The combined organic layers were washed with H2O (50 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. LCMS: 703.1 [M+H]+. Step 5. Synthesis of 2-bromo-5-ethyl-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin-7(4H)-one trifluoroacetate [00302] A solution of tert-butyl 4-(1-(5-(bis(4-methoxybenzyl)amino)-2-bromothiazol-4-yl)- 1,3-dioxopentan-2-yl)piperazine-1-carboxylate (4.60 g, 6.56 mmol, 1.0 eq) in TFA (23 mL) was stirred at 55 °C for 0.5 h. The reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. LCMS: 345.1 [M+H]+. Step 6. Synthesis of tert-butyl 4-(2-bromo-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6- yl)piperazine-1-carboxylate [00303] To a solution of 2-bromo-5-ethyl-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin-7(4H)-one trifluoroacetate (2.20 g, 6.41 mmol, 1.0 eq) in DCM (25 mL) was added DIEA (828 mg, 6.41 mmol, 1.0 eq) and (Boc)2O (2.80 g, 12.8 mmol, 2.0 eq) at 0 °C. The mixture was stirred at 0 °C for 1 h and concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. LCMS: 445.1 [M+H]+. Step 7. Synthesis of tert-butyl 4-(2-bromo-4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-7-oxo-4,7- dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-1-carboxylate [00304] To a solution of tert-butyl 4-(2-bromo-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4- b]pyridin-6-yl)piperazine-1-carboxylate (2.40 g, 5.41 mmol, 1.0 eq) and tert-butyl 2-bromoacetate (1.58 g, 8.12 mmol, 1.5 eq) in 1,4-dioxane (24 mL) was added DIEA (2.10 g, 16.2 mmol, 3.0 eq), and the mixture was stirred at 80 °C overnight. The reaction mixture was cooled to room temperature, diluted with H2O (30 mL), and extracted with EtOAc (30 mL*2). The combined organic layers were washed with H2O (10 mL*3), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. LCMS: 557.2 [M+H]+. Intermediate-2: 2-(6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-2-(2-methoxypyridin- 4-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid
Figure imgf000177_0001
Step 1. Synthesis of tert-butyl 4-(4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-2-(2-methoxypyridin-4- yl)-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-l -carboxylate
[00305] To a solution of tert-butyl 4-(2-bromo-4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-7-oxo- 4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-l-carboxylate (Intermediate- 1) (460 mg, 825 pmol, 1.0 eq) and (2-methoxypyridin-4-yl)boronic acid (379 mg, 2.48 mmol, 3.0 eq) in 1,4- di oxane (10 mL) and H2O (2 mL) was added K3PO4 (525 mg, 2.48 mmol, 3.0 eq) and Pd(dppf)C12- CH2CI2 (202 mg, 247 pmol, 0.3 eq) in a glovebox. The resulting mixture was heated to 80 °C and stirred at 80 °C overnight under nitrogen atmosphere. The reaction mixture was cooled to room temperature and filtered through a pad of celite. The filtrate was concentrated in vacuo, and the residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound.
LCMS: 586.2 [M+H]+.
Step 2. Synthesis of 2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-l-yl)thiazolo[5,4- b]pyridin-4(7H)-yl)acetic acid trifluoroacetate
[00306] To a solution of tert-butyl 4-(4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-l -carboxylate (130 mg, 221 pmol, 1.0 eq) in DCM (0.5 mL) was added TFA (2 mL) and the mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. LCMS: 430.2 [M+H]+. Step 3. Synthesis of 2-(6-(4-(tert-butoxycarbonyl)piperazin-l-yl)-5-ethyl-2-(2-methoxypyridin-4- yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid
[00307] To a solution of 2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-l- yl)thiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid trifluoroacetate (50 mg, 0.12 mmol, 1.0 eq) in DCM (2 mL) was added DIEA until pH 8 was reached at 0 °C. (Boc)2O (38 mg, 0.17 pmol, 1.5 eq) was added and the reaction mixture was stirred at 0 °C for 0.5 h. The mixture was diluted with H2O (10 mL) and adjusted to pH 5 with aq. 1 N HC1 solution. The resulting mixture was extracted with DCM (10 mL * 3), the combined organic layers were concentrated in vacuo. The residue was suspended into a mixed solvent of PE/EtOAc (2 mL, PE/EtOAc=10:l) and stirred at room temperature for 10 min. The resulting suspension was filtered, the filter cake was dried in vacuo to afford the title compound, which was used into the next step without further purification. LCMS: 530.3 [M+H]+. Intermediate-3: N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2-methoxypyridin-4- yl)-7-oxo-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin-4(7H)-yl)acetamide hydrochloride
Figure imgf000179_0001
Step 1. Synthesis of tert-butyl 4-(4-(2-((2-chloro-4-(trifluoromethyl)phenyl)amino)-2-oxoethyl)- 5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-1- carboxylate [00308] To a solution of 2-(6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid (Intermediate-2) (120 mg, 226 µmol, 1.0 eq) and 2-chloro-4-(trifluoromethyl)aniline (49 mg, 0.25 mmol, 1.1 eq) in DCM (1 mL) and pyridine (1 mL) was added POCl3 (52 mg, 0.34 mmol, 1.5 eq) at -10 °C, and the mixture was stirred at -10 °C for 5 min. The reaction was quenched with H2O (10 mL) and then adjusted to pH 5 with saturated aq. citric acid solution. The resulting solution was extracted with EtOAc (10 mL*2). The combined organic layers were dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by prep-TLC (silica gel, EtOAc/PE), and the product was further purified by trituration in ACN (0.2 mL). The mixture was filtered, and the filter cake was dried in vacuo to afford the title compound, which was used into the next step without further purification. LCMS: 707.0 [M+H]+. Step 2. Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2-methoxypyridin-4- yl)-7-oxo-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin-4(7H)-yl)acetamide hydrochloride [00309] To a 2 M solution of HCl in 1,4-dioxane (2 mL) was added tert-butyl 4-(4-(2-((2- chloro-4-(trifluoromethyl)phenyl)amino)-2-oxoethyl)-5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo- 4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-1-carboxylate (40 mg, 57 µmol, 1.0 eq) and the reaction mixture was stirred at room temperature for 0.5 h. The resulting mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. LCMS: 607.3 [M+H]+. Intermediate-4: 7-hydroxy-2,3-dihydrofuro[3,2-c]pyridine-6-carboxylic acid
Figure imgf000180_0001
Step 1. Synthesis of methyl 3-(bromomethyl)furan-2-carboxylate [00310] To a solution of methyl 3-methylfuran-2-carboxylate (5.00 g, 35.7 mmol, 1.00 eq) in CCl4 (50.0 mL) was added NBS (6.68 g, 37.5 mmol, 1.05 eq) and AIBN (2.35 g, 14.3 mmol, 0.40 eq) at room temperature. The mixture was degassed three times with N2 and stirred at 50 °C for 16 h. The resulting mixture was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford the title compound. LCMS: 219/221 [M+H]+. Step 2. Synthesis of methyl 3-(((N-(2-methoxy-2-oxoethyl)-4- methylphenyl)sulfonamido)methyl)furan-2-carboxylate [00311] To a solution of methyl 3-(bromomethyl)furan-2-carboxylate (4.70 g, 21.5 mmol, 1.00 eq) and K2CO3 (5.93 g, 43.0 mmol, 2.00 eq) in ACN (47.0 mL) was added methyl 2-(4- methylbenzenesulfonamido)acetate (5.23 g, 21.5 mmol, 1.00 eq) and the mixture was stirred at room temperature for 16 h. The reaction was filtered, and the filtrate was concentrated in vacuum. The residue was purified by column chromatography on silica (Eluent of EtOAc/PE) to afford the title compound. LCMS: 382 [M+H1+.
Step 3. Synthesis of methyl 7-hydroxyfuro[3,2-c]pyridine-6-carboxylate
[00312] To a solution of methyl 3-(((N-(2-methoxy-2-oxoethyl)-4- methylphenyl)sulfonamido)methyl)furan-2-carboxylate (1.80 g, 4.72 mmol, 1.00 eq) in THF (18.0 mb) was added a 1 M solution of LiHMDS (14.2 mL, 14.2 mmol, 3.00 eq) in THF dropwise at - 78 °C under N2 atmosphere. After addition, the reaction mixture was allowed to warm to 0 °C and stirred for 5 h under N2 atmosphere. A saturated NH4CI (aq.) solution was added to the reaction mixture and the aq. phase was extracted with EtOAc. The organic layer was dried over anhydrous Na2SC>4, filtered and concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (Eluent of EtOAc/PE) to afford the title compound.
LCMS: 194 [M+H]+.
Step 4. Synthesis of methyl 7-hydroxy-2,3-dihydrofuro[3,2-c]pyridine-6-carboxylate
[00313] To a mixture of methyl 7-hydroxyfuro[3,2-c]pyridine-6-carboxylate (760 mg, 3.93 mmol, 1.00 eq) in MeOH (10.0 mL) was added Pd/C (152 mg, 20%). The mixture was degassed and purged with H2 gas (40 psi). Then it was stirred at 50 °C for 16 h. The mixture was filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (Eluent of DCM/MeOH) to afford the title compound. LCMS: 196 [M+H]+. Step 5. Synthesis of 7-hydroxy-2,3-dihydrofuro[3,2-c]pyridine-6-carboxylic acid
[00314] To a mixture of methyl 7-hydroxy-2,3-dihydrofuro[3,2-c]pyridine-6-carboxylate (680 mg, 3.48 mmol, 1.00 eq) in H2O (3.00 mL) and MeOH (3.00 mL) was added NaOH (557 mg, 13.9 mmol, 4.00 eq) at room temperature and the resulting mixture was stirred at 60 °C for 16 h. After completion, the reaction mixture was concentrated under reduced pressure. The residue was diluted with H2O and acidized by 3 N HC1. The precipitated solids were collected by filtration and dried to afford the title compound, which was used in the next step directly without further purification. LCMS: 182 [M+H]+.
Intermediate-5: 4-hydroxy-2,3-dihydrofuro[2,3-c]pyridine-5-carboxylic acid
Figure imgf000182_0001
Intermediate 5
Step 1. Synthesis of methyl 2-(bromomethyl)furan-3-carboxylate
[00315] To a stirred solution of methyl 2-methylfuran-3 -carboxylate (10.0 g, 71.4 mmol, 1.00 eq) in CCh (55.0 mL) was added NBS (15.2 g, 85.6 mmol, 1.20 eq) and AIBN (586 mg, 3.57 mmol, 0.05 eq) at room temperature. The resulting mixture was degassed three times with N2 and stirred overnight at 50 °C under N2. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford the title compound. ’H NMR (400 MHz, DMSO-d6) 8 ppm 7.86 (d, 1H), 6.80 (d, 1H), 4.95 (s, 2H), 3.82 (s, 3H).
Step 2. Synthesis of methyl 2-(((N-(2-methoxy-2-oxoethyl)-4- methylphenyl)sulfonamido)methyl)furan-3-carboxylate
[00316] To a stirred solution of methyl 2-(bromomethyl)furan-3 -carboxyl ate (12.0 g, 54.8 mmol, 1.00 eq) and methyl 2-(4-methylbenzenesulfonamido)acetate (13.3 g, 54.8 mmol, 1.00 eq) in ACN (100 mL) was added K2CO3 (15.1 g, 110 mmol, 2.00 eq) at room temperature. The resulting mixture was degassed three times with N2 and then stirred overnight at room temperature. The reaction mixture was filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford the title compound. LCMS: 382.1 [M+H]+.
Step 3. Synthesis of methyl 4-hydroxyfuro[2,3-c]pyridine-5-carboxylate
[00317] To a stirred solution of methyl 2-([N-(2-methoxy-2-oxoethyl)4- methylbenzenesulfonamido]methylfuran-3-carboxylate (9.00 g, 23.6 mmol, 1.00 eq) in THF (50.0 mL) was added a 1 M solution of LiHMDS (70.0 mL, 70.0 mmol, 3.00 eq) in THF at -78 °C under N2. The resulting mixture was stirred for Ih at room temperature under N2. The reaction mixture was quenched with saturated NH4CI solution at 0 °C and diluted with H2O (200 mL). The resulting mixture was extracted with EtOAc (2 x 200 mL). The combined organic layers were washed with brine (3 x 100 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford a crude product, which was purified by trituration with PE (250 mL) to afford the title compound. LCMS: 194.0 [M+H]+. Step 4. Synthesis of methyl 4-hydroxy-2,3-dihydrofuro[2,3-c]pyridine-5-carboxylate [00318] To a solution of methyl 4-hydroxyfuro[2,3-c]pyridine-5-carboxylate (1.00 g, 5.18 mmol, 1.00 eq) in AcOH (1.00 mL) and MeOH (10.0 mL) was added Pd/C (1.65 g, 10%). The mixture was degassed three times with H2, and then stirred at room temperature for 1 h under H2. The reaction mixture was filtered, and the filter cake was washed with MeOH. The filtrate was concentrated under reduced pressure and the residue was purified by reverse phase HPLC (C18 column, H2O (10mmol/L NH4HCO3-ACN) to afford the title compound. LCMS: 195.9 [M+H]+. Step 5. Synthesis of 4-hydroxy-2,3-dihydrofuro[2,3-c]pyridine-5-carboxylic acid [00319] To a stirred solution of methyl 4-hydroxy-2H,3H-furo[2,3-c]pyridine-5-carboxylate (300 mg, 1.54 mmol, 1.00 eq) in MeOH (3.00 mL) was added NaOH (246 mg, 6.15 mmol, 4.00 eq) and H2O (3.00 mL) at room temperature. The reaction mixture was stirred overnight at 60 oC. The mixture was acidified to pH = 3 with 1 N HCl. The resulting mixture was extracted with EtOAc (3 x 15 mL). The combined organic layers were washed with brine (2 x 20 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure to afford the title compound, which was used in the next step directly without further purification. LCMS: 181.9 [M+H]+. Intermediate-6: 5-hydroxy-6-methylpyrimidine-4-carboxylic acid
Figure imgf000183_0001
Step 1: Synthesis of 4-chloro-5-methoxy-6-methylpyrimidine [00320] To a mixture of 4,6-dichloro-5-methoxypyrimidine (30.00 g, 167.6 mmol, 1.0 eq) in THF (300 mL) was added a 3 M solution of MeMgBr (61.45 mL, 184.4 mmol, 1.1 eq) in diethyl ether dropwise at 0 °C and then the mixture was stirred at 5 °C for 1 h. The resulting mixture was poured into H2O (200 mL) and extracted with EtOAc (100 mL*3). The combined organic phase was washed with brine (100 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuum. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford the title compound. LCMS: 159.1 [M+H]+. Step 2: Synthesis of methyl 5-methoxy-6-methylpyrimidine-4-carboxylate [00321] To a mixture of 4-chloro-5-methoxy-6-methylpyrimidine (22.00 g, 138.7 mmol, 1.0 eq) in MeOH (250 mL) was added Pd(dppf)Cl2-CH2Cl2 (6.80 g, 8.32 mmol, 0.06 eq) and TEA (28.1 g, 278 mmol, 2.0 eq). The reaction was purged with CO (50 psi) and stirred at 50 °C overnight. The resulting mixture was filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (eluent of EtOAc/PE) to afford the title compound. LCMS: 183.1 [M+H]+. Step 3: Synthesis of 5-hydroxy-6-methylpyrimidine-4-carboxylic acid [00322] A mixture of methyl 5-methoxy-6-methylpyrimidine-4-carboxylate (16.00 g, 87.83 mmol, 1.0 eq) in HBr solution (aq.) (68.5 mL, 68%) was stirred at 50 °C overnight. Then HI solution (aq.) (67.2 mL, 56%) was added and stirred at 50 °C for 6 h. The reaction mixture was cooled to room temperature and basified with 50% NaOH solution (aq.) to pH 9 at 0 oC, then adjusted to pH 7 with 2 M HCl solution (aq.) at 0 oC. The mixture was filtered, the filter cake was dried in vacuum to afford the title compound, which was used in the next step without further purification. LCMS: 155.1 [M+H]+. 1H NMR (400 MHz, DMSO-d6) δ ppm 15.46 (br s, 1H), 8.37 (s, 1H), 2.34 (s, 3H). Intermediate-8: 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4-yl)thiazol-5-yl)- 2-bromopentane-1,3-dione
Figure imgf000184_0001
Figure imgf000185_0001
[00323] Step 1: Synthesis of 2-methoxypyridine-4-carbothioamide [00324] To a solution of 2-methoxyisonicotinonitrile (15.10 g, 112.6 mmol, 1.0 eq) in DMF (400 mL) was added MgCl2 (10.72 g, 112.6 mmol, 1.0 eq) and the mixture was stirred at room temperature for 15 mins. NaHS (25.02 g, 337.7 mmol, 3.0 eq) was added to the mixture and the resulting mixture was stirred at room temperature for 14 h. The reaction mixture was poured into water (1.5 L) and extracted with EtOAc (1 L * 3). The combined organic layers were washed with brine (800 mL* 5), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00325] LCMS: 169.0 [M+H]+. [00326] Step 2: Synthesis of ethyl 4-hydroxy-2-(2-methoxypyridin-4-yl)thiazole-5-carboxylate [00327] To a solution of 2-methoxypyridine-4-carbothioamide (20.00 g, 118.9 mmol, 1.0 eq) in EtOH (400 mL) was added pyridine (28.21 g, 356.7 mmol, 3.0 eq) and diethyl 2-bromomalonate (28.42 g, 118.9 mmol, 1.0 eq), and then the mixture was stirred at 80 °C for 1 h. The reaction mixture was cooled to room temperature and then filtered. The filtrate was concentrated to approximately half its volume and filtered again. The combined filter cake was dried in vacuo to afford the title compound, which was used into the next step without further purification. [00328] LCMS: 281.0 [M+H]+. [00329] Step 3: Synthesis of ethyl 2-(2-methoxypyridin-4-yl)-4- (((trifluoromethyl)sulfonyl)oxy)thiazole-5-carboxylate [00330] To a solution of ethyl 4-hydroxy-2-(2-methoxypyridin-4-yl)thiazole-5-carboxylate (16.62 g, 59.28 mmol, 1.0 eq) and pyridine (14.07 g, 177.8 mmol, 3.0 eq) in DCM (100 mL) was added Tf2O (25.09 g, 88.92 mmol, 1.5 eq) at 0 °C. Then the mixture was stirred at room temperature for 1.5 h. The reaction mixture was diluted with H2O (100 mL), extracted with DCM (100 mL*2). The combined organic layers were washed with aqueous HCl solution (80 mL, 0.5 N), brine (100 mL* 2), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00331] LCMS: 413.1 [M+H]+. [00332] Step 4: Synthesis of ethyl 4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazole-5-carboxylate [00333] To a solution of ethyl 2-(2-methoxypyridin-4-yl)-4- (((trifluoromethyl)sulfonyl)oxy)thiazole-5-carboxylate (25.00 g, 60.63 mmol, 1.0 eq) and bis(4- methoxybenzyl)amine (23.40 g, 90.94 mmol, 1.5 eq) in 1,4-dioxane (400 mL) was added DIEA (23.51 g, 181.9 mmol, 3.0 eq), and the mixture was stirred at 100 °C overnight. The reaction mixture was diluted water (300 mL) and extracted with EtOAc (300 mL*2). The combined organic layers were washed with brine (100 mL*3), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. [00334] LCMS: 520.3 [M+H]+. [00335] Step 5: Synthesis of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)pentane-1,3-dione [00336] To a mixture of ethyl 4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazole-5-carboxylate (500 mg, 962 μmol, 1.0 eq), butan-2-one (278 mg, 3.85 mmol, 4.0 eq) in 2-methyltetrahydrofuran (4 mL) was added LiHMDS (1 M in THF, 3.85 mL, 4.0 eq) at room temperature and then the mixture was stirred at 80°C for 2 h. The reaction mixture was poured into saturated NH4Cl aqueous solution (200 mL) and extracted with EtOAc (200 mL). The organic layer was concentrated under reduced pressure. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. [00337] LCMS: 546.2 [M+H]+. [00338] Step 6: Synthesis of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)-2-bromopentane-1,3-dione [00339] To a solution of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4-yl)thiazol- 5-yl)pentane-1,3-dione (2.47 g, 4.53 mmol, 1.0 eq) in DCM (25 mL) was added TsOH-H2O (78 mg, 453 μmol, 0.1 eq) and NBS (806 mg, 4.53 mmol, 1.0 eq) and then the mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with water (35 mL) and extracted with DCM (30 mL*2). The combined organic layers were washed with brine (25 mL*3), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00340] LCMS: 626.1 [M+H]+. Intermediate-9: tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7- dihydrothiazolo[4,5-b]pyridin-6-yl)piperazine-1-carboxylate
Figure imgf000187_0001
[00341] Step 1: Synthesis of tert-butyl 4-(1-(4-(bis(4-methoxybenzyl)amino)-2-(2- methoxypyridin-4-yl)thiazol-5-yl)-1,3-dioxopentan-2-yl)piperazine-1-carboxylate [00342] To a solution of 1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4-yl)thiazol- 5-yl)-2-bromopentane-1,3-dione (Intermediate-8) (3.00 g, 4.80 mmol, 1.0 eq) in THF (30 mL) was added DIEA (1.86 g, 14.4 mmol, 3.0 eq) and tert-butyl piperazine-1-carboxylate (2.68 g, 14.4 mmol, 3.0 eq), then the resulting mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with H2O (30 mL), extracted with EtOAc (30 mL*2). The combined organic layers were washed with brine (20 mL*2), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by silica gel chromatography (EtOAc/PE) to afford the title compound. [00343] LCMS: 730.3 [M+H]+. [00344] Step 2: Synthesis of 5-ethyl-2-(2-methoxypyridin-4-yl)-6-(piperazin-1-yl)thiazolo[4,5- b]pyridin-7(4H)-one trifluoroacetate [00345] A solution of tert-butyl 4-(1-(4-(bis(4-methoxybenzyl)amino)-2-(2-methoxypyridin-4- yl)thiazol-5-yl)-1,3-dioxopentan-2-yl)piperazine-1-carboxylate (1.00 g, 1.37 mmol, 1.0 eq) in TFA (10 mL) was stirred at 70 °C for 4 h, and then the reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00346] LCMS: 372.1 [M+H]+. [00347] Step 3: Synthesis of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7- dihydrothiazolo[4,5-b]pyridin-6-yl)piperazine-1-carboxylate [00348] To a solution of 5-ethyl-2-(2-methoxypyridin-4-yl)-6-(piperazin-1-yl)thiazolo[4,5- b]pyridin-7(4H)-one trifluoroacetate (600 mg, 1.62 mmol, 1.0 eq) in DCM (10 mL) was added DIEA (626 mg, 4.85 mmol, 3.0 eq) and Boc2O (1.06 g, 4.85 mmol, 3.0 eq). The mixture was stirred at room temperature for 0.5 h. The reaction mixture was diluted with H2O (30 mL), extracted with DCM (30 mL*2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue suspended in a mixture solvent of DCM and PE (DCM:PE = 1:3, 10 mL) and stirred for 10 mins at room temperature. The resulting suspension was filtered, and the filter cake was dried in vacuo to afford the title compound, which was used into the next step without further purification. [00349] LCMS: 472.2 [M+H]+. Intermediate-10: N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2-methoxypyridin-4- yl)-7-oxo-6-(piperazin-1-yl)thiazolo[4,5-b]pyridin-4(7H)-yl)acetamide hydrochloride
Figure imgf000189_0001
[00350] Step 1: Synthesis of tert-butyl 4-(4-(2-((2-chloro-4-(trifluoromethyl)phenyl)amino)-2- oxoethyl)-5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[4,5-b]pyridin-6- yl)piperazine-1-carboxylate [00351] To a solution of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7- dihydrothiazolo[4,5-b]pyridin-6-yl)piperazine-1-carboxylate (Intermediate-9) (285 mg, 604 μmol, 1.0 eq) in DMF (10 mL) was added DIEA (234 mg, 1.81 mmol, 3.0 eq) and N-(2-chloro-4- (trifluoromethyl)phenyl)-2-iodoacetamide (220 mg, 604 μmol, 1.0 eq). The mixture was stirred at 60 °C for 3 h. The reaction mixture was cooled to room temperature, and it was diluted with H2O (50 mL) and extracted with EtOAc (60 mL*2). The combined organic layers were washed with brine (30 mL*3), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA-ACN) to afford the title compound. [00352] LCMS: 707.2 [M+H]+. [00353] Step 2: Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxo-6-(piperazin-1-yl)thiazolo[4,5-b]pyridin-4(7H)-yl)acetamide hydrochloride [00354] To a solution of tert-butyl 4-(4-(2-((2-chloro-4-(trifluoromethyl)phenyl)amino)-2- oxoethyl)-5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[4,5-b]pyridin-6- yl)piperazine-1-carboxylate (180 mg, 255 μmol, 1.0 eq) in 1,4-dioxane (2.7 mL) was added a solution of HCl in 1,4-dioxane (4 M, 2.7 mL, 42 eq), and the resulting mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00355] LCMS: 607.2 [M+H]+. [00356] Intermediate-11: 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide
Figure imgf000190_0001
[ ] tep : yntess o -(-romo--ety--oxo--(pperazn--y)t azoo[,- b]pyridin-4(7H)-yl)acetic acid trifluoroacetate [00358] To a solution of tert-butyl 4-(2-bromo-4-(2-(tert-butoxy)-2-oxoethyl)-5-ethyl-7-oxo- 4,7-dihydrothiazolo[5,4-b]pyridin-6-yl)piperazine-1-carboxylate (Intermediate-1) (4.00 g, 7.17 mmol, 1.0 eq) in DCM (10 mL) was added TFA (40 mL) and it was stirred at 30 °C for 1 h. The reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00359] LCMS: 401.0 [M+H]+. [00360] Step 2: Synthesis of 2-(2-bromo-6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid [00361] To a solution of 2-(2-bromo-5-ethyl-7-oxo-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin- 4(7H)-yl)acetic acid trifluoroacetate (3.7 g, 7.18 mmol, 1.0 eq) in DCM (40 mL) was added (Boc)2O (1.72 g, 7.90 mmol, 1.1 eq) and DIEA (2.78 g, 21.54 mmol, 3.0 eq) at 0 °C, and the resulting mixture was stirred at 0 °C for 0.25 h. The reaction mixture was diluted with water (200 mL) and extracted with DCM (200 mL). The organic layer was washed with brine (50 mL), dried over anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by reverse phase HPLC (C18 column, water (0.1% FA-ACN) to afford the title compound. [00362] LCMS: 501.0 [M+H]+. [00363] Step 3: Synthesis of tert-butyl 4-(2-bromo-4-(2-((2-chloro-4- (trifluoromethyl)phenyl)amino)-2-oxoethyl)-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6- yl)piperazine-1-carboxylate [00364] To a solution of 2-(2-bromo-6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-7- oxothiazolo[5,4-b]pyridin-4(7H)-yl)acetic acid (2.50 g, 4.99 mmol, 1.0 eq) and 2-chloro-4- (trifluoromethyl)aniline (1.02 g, 5.24 mmol, 1.05 eq) in pyridine (25 mL) and DCM (25 mL) was added POCl3 (1.15 g, 7.48 mmol, 1.5 eq) dropwise at -10 °C under N2. After addition, the reaction was stirred at -10 °C for 5 mins. The reaction mixture was quenched with H2O (100 mL) and then extracted with DCM (100 mL). The organic phase was concentrated in vacuo and then purified by flash silica gel chromatography (Eluent of EtOAc/PE) to afford the title compound. [00365] LCMS: 678.0 [M+H]+. [00366] Step 4: Synthesis of 2-(2-bromo-5-ethyl-7-oxo-6-(piperazin-1-yl)thiazolo[5,4- b]pyridin-4(7H)-yl)-N-(2-chloro-4-(trifluoromethyl)phenyl)acetamide trifluoroacetate [00367] To a solution of tert-butyl 4-(2-bromo-4-(2-((2-chloro-4- (trifluoromethyl)phenyl)amino)-2-oxoethyl)-5-ethyl-7-oxo-4,7-dihydrothiazolo[5,4-b]pyridin-6- yl)piperazine-1-carboxylate (50 mg, 74 μmol, 1.0 eq) in DCM (1.5 mL) was added TFA (0.5 mL), and the resulting mixture was stirred at room temperature for 0.5 h. The reaction mixture was concentrated in vacuo to afford the title compound, which was used into the next step without further purification. [00368] LCMS: 578.0 [M+H]+. [00369] Step 5. Synthesis of 2-(2-bromo-5-ethyl-6-(4-(5-hydroxy-6-methylpyrimidine-4- carbonyl)piperazin-1-yl)-7-oxothiazolo[5,4-b]pyridin-4(7H)-yl)-N-(2-chloro-4- (trifluoromethyl)phenyl)acetamide [00370] To a solution of 2-(2-bromo-5-ethyl-7-oxo-6-(piperazin-1-yl)thiazolo[5,4-b]pyridin- 4(7H)-yl)-N-(2-chloro-4-(trifluoromethyl)phenyl)acetamide trifluoroacetate (36 mg, 52 μmol, 1.0 eq) and 5-hydroxy-6-methylpyrimidine-4-carboxylic acid (18 mg, 104 μmol, 2.0 eq) in pyridine (0.5 mL) was added EDCI (20 mg, 104 μmol, 2.0 eq), and the resulting mxiture was stirred at 40 °C for 2 h. The reaction mixture was concentrated in vacuo and then purified by reverse phase HPLC (C18 column, water (0.1% FA)- ACN) to afford the title compound. [00371] LCMS: 714.1 [M+H]+. Intermediate-12: N-(2-chloro-4-(trifluoromethyl)phenyl)-2-iodoacetamide [00372] Step
Figure imgf000192_0001
. y - - - - - - y p y )acetamide [00373] To a solution of 2-chloro-4-(trifluoromethyl)aniline (19.1 g, 97.7 mmol, 1.0 eq) and TEA (19.76 g, 195.3 mmol, 2.0 eq) in DCM (200 mL) was added dropwise a solution of 2- chloroacetyl chloride (11.03 g, 97.7 mmol, 1.0 eq) in DCM (50 mL) at 0 °C. After addition, the resulting mixture was warmed to room temperature and stirred at room temperature overnight. The reaction mixture was purified by column chromatography on silica gel (eluent of EtOAc/PE) to afford the title compound. [00374] LCMS: 273.9 [M+H]+. [00375] Step 2. Synthesis of N-(2-chloro-4-(trifluoromethyl)phenyl)-2-iodoacetamide [00376] To a solution of 2-chloro-N-(2-chloro-4-(trifluoromethyl)phenyl)acetamide (7.70 g, 28.3 mmol, 1.0 eq) in acetone (60 mL) was added KI (5.17 g, 31.1 mmol, 1.1 eq), the resulting mixture was stirred at 60 °C for 2 h. The mixture was cooled to room temperature, filtered and the filtrate was concentrated in vacuum to afford the title compound, which was used in the next step without further purification. [00377] LCMS: 363.9 [M+H]+. [00378] Intermediate-13: 2-(6-(4-(tert-butoxycarbonyl)piperazin-1-yl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxothiazolo[4,5-b]pyridin-4(7H)-yl)acetic acid
Figure imgf000193_0001
[00379] Step 1. Synthesis of tert-butyl 4-(4-(2-ethoxy-2-oxoethyl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxo-4,7-dihydrothiazolo[4,5-b]pyridin-6-yl)piperazine-1-carboxylate [00380] To a stirred solution of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4,7- dihydrothiazolo [4, 5-b] pyridin-6-yl) piperazine-1-carboxylate (Intermediate-2) (500 mg, 1.06 mmol, 1.0 eq) in THF (5 mL) was added NaH (31 mg, 1.27 mmol, 1.2 eq) at 0°C under N2 atmosphere. The resulting mixture was degassed with N2 for three times, then stirred for 0.5 h at 0°C under N2 atmosphere. To the above mixture was added ethyl 2-iodoacetate (454 mg, 2.12 mmol, 2.0 eq) at 0°C. The resulting mixture was stirred for additional 4 h at 60°C. The mixture was allowed to cool down to room temperature. The reaction was quenched by the addition of ice water (2 mL) at 0°C. The resulting mixture was diluted with water (80 mL). The resulting mixture was extracted with EtOAc (3 * 80 mL). The combined organic layers were washed with brine (80 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by reverse Phase HPLC (Cl 8 column, water (lOmmol/L NH4HCO3-ACN) to afford the title compound.
[00381] LCMS: 558.2 [M+H]+.
[00382] Step 2. Synthesis of 2-(6-(4-(tert-butoxycarbonyl)piperazin-l-yl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxothiazolo[4,5-b]pyridin-4(7H)-yl)acetic acid
[00383] To a stirred solution of tert-butyl 4-(4-(2-ethoxy-2-oxoethyl)-5-ethyl-2-(2 -methoxyp yridin-4-yl)-7-oxo-4, 7-dihydrothiazolo[4,5-b] pyridin-6-yl) piperazine- 1 -carboxylate (100 mg, 179 pmol, 1.0 eq) in THF (3 mL) and H2O (1 mL) was added LiOH (13 mg, 537 pmol, 3.0 eq) at 0°C. The resulting mixture was stirred for 2 h at room temperature. The mixture was acidified to pH = 5 with 1 M solution aq. HC1. The resulting mixture was diluted with water (20 mL). The resulting mixture was extracted with EtOAc (3 * 20 mL). The combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure to afford the title compound, which was used into the next step directly without purification.
[00384] LCMS: 530.2 [M+H]+.
Intermediate-14: 2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-l-yl)thiazolo[4,5- b]pyridin-4(7H)-yl)-N-(3-(trifluoromethyl)bicyclo[l.l.l]pentan-l-yl)acetamide hydrochloride
Figure imgf000195_0001
Intermediate-14
[00385] Step 1. Synthesis of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4-(2-oxo- 2-((3-(trifluoromethyl)bicyclo[l .1. l]pentan-l-yl)amino)ethyl)-4,7-dihydrothiazolo[4,5- b]pyridin-6-yl)piperazine- 1 -carboxylate
[00386] To a stirred solution of 2-(6-(4-(tert-butoxycarbonyl) piperazin-l-yl)-5-ethyl-2-(2- methoxypyridin-4-yl)-7-oxothiazolo [4, 5-b] pyridin-4(7H)-yl) acetic acid (Intermediate- 13) (90 mg, 170 pmol, 1.0 eq) and 3 -(trifluoromethyl) bicycle [1.1.1] pentan- 1 -amine (31 mg, 204 pmol, 1.2 eq) in THF (5 mL) was added HATU (97 mg, 255 pmol, 1.5 eq) and DIEA (66 mg, 510 pmol, 3.0 eq) at room temperature. The resulting mixture was stirred for 4 h at room temperature. The resulting mixture was diluted with water (10 mL). The resulting mixture was extracted with EtOAc (3 * 10 mL). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (Eluent of DCM/MeOH) to afford the title compound.
[00387] LCMS: 663.3 [M+H]+. [00388] Step 2. Synthesis of 2-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-6-(piperazin-1- yl)thiazolo[4,5-b]pyridin-4(7H)-yl)-N-(3-(trifluoromethyl)bicyclo[1.1.1]pentan-1-yl)acetamide hydrochloride [00389] To a stirred solution of tert-butyl 4-(5-ethyl-2-(2-methoxypyridin-4-yl)-7-oxo-4-(2- oxo-2-((3-(trifluoromethyl) bicycle [1.1.1] pentan-1-yl) amino) ethyl)-4,7-dihydrothiazolo [4, 5- b] pyridin-6-yl) piperazine-1-carboxylate (90 mg, 136 μmol, 1.0 eq) in 4 M solution of HCl/1,4- dioxane (3 mL) at room temperature. The resulting mixture was stirred for 1 h at room temperature. The resulting mixture was concentrated under reduced pressure to afford the title compound, which was used into the next step directly without purification. [00390] LCMS: 599.1 [M+H]+. Example 2: WRN (BV08) ADP-Glo assay protocol [00391] Bovine skin gelatin (BSG), dimethyl sulfoxide (DMSO), Pluronic F-127 and tris(2- carboxyethyl)phosphine hydrochloride solution (TCEP) were purchased from Sigma-Aldrich (St. Louis, MO) at the highest level of purity possible. Bicine buffer solution was purchased from Alfa Aesar (Tewksbury, MA) and compound NSC-617145 was purchased from Tocris (Minneapolis, MN). DNA duplex was synthesized at BGI (Shenzhen, China) and was composed of strand 1 with the sequence 5’-GCACTGGCCGTCGTTTTACGGTCG-3’ (SEQ ID NO.: 1) and strand 2 with the sequence 5’-TCCAAGTAAAACGACGGCCAGTGC-3’ (SEQ ID NO.: 2). DNA strands were annealed by heating to 95oC for 5 minutes followed by slow cooling to room temperature. Compounds in 100% DMSO (0.1 ^l) were spotted into a 384-well white polystyrene Optiplate- 384 (Perkin Elmer; Waltham, MA) assay plate using a LabCyte Echo 550 (Agilent; Santa Clara, CA). DMSO (0.1 ^l) was added to columns 12, rows A-H and column 24, rows I-P for the maximum signal control. Compound NSC-617145 (0.1 ^l) was added to columns 12, rows I-P and 24, rows A-H for the minimum signal control (100% inhibition). Compounds/DMSO were preincubated for 15 minutes at 25oC with 5 ^l 2X WRN (BV08), prepared as described below, in assay buffer containing 20 mM Bicine (pH = 7.5), 1 mM MgCl2, 10 mM KCl, 0.1% Pluronic F- 127, 0.005% BSG, 1 mM TCEP. The reaction was initiated by the addition of 5 ^l 2X substrate mixture in assay buffer and incubated for 60 minutes at 25oC. The final concentrations of the assay components were 0.15 nM WRN, 5 ^M ATP, and 0.1 nM DNA duplex. The final DMSO concentration was 1% and the reference compound concentration (NSC-617145) used for the minimal signal control was 20 ^M. The reaction was stopped by the addition of the ADP-Glo Kit components (Promega; Madison, WI) as directed and the relative luminescence units (RLU) were read on an Envision 2104 (Perkin Elmer; Waltham, MA). % inhibition calculation: %INH = (RLU MAX- RLU sample)/(RLU MAX – RLU MIN)) × 100 Where RLU = relative luminescence units, sample = signal in sample well, and MIN and MAX are the respective minimum and maximum signal controls. Four-parameter IC50 fit equation: Y = Bottom + (Top - Bottom)/(1 + (IC50/X)^Hill Slope) Where top and bottom are normally allowed to float but may be fixed at 100 or 0 respectively in a 3-parameter fit. Y is the % inhibition and X is the compound concentration. WRN protein production [00392] Molecular Biology and virus production. The DNA encoding human Werner helicase (Uniprot Q14191, amino acids 517-1235 with L1074F point mutation) was generated with codon- optimization for E.coli expression and subcloned into the pFastBac vector with a TEV cleavable 8xHis tag (WRN-BV08). The baculovirus from the expression plasmid WRN-BV08 was generated from transfection and amplification following the manufacturer’s instructions. [00393] Gene sequence of WRN-BV08 [pFastBac1-WRN-(517-1235 L1074F)-TEV-8His] (SEQ ID NO.: 3) ATGAACGAGGGCGAAGAAGACGACGACAAGGACTTCCTGTGGCCTGCCCCTAACGA AGAACAAGTGACATGCCTGAAGATGTACTTCGGACACAGTAGCTTCAAGCCTGTGC AATGGAAGGTCATCCACTCCGTGCTGGAAGAAAGAAGGGACAACGTGGCTGTGATG GCTACCGGATACGGTAAGTCCCTGTGCTTCCAGTACCCTCCCGTGTACGTGGGCAAG ATCGGTCTGGTGATCTCCCCTCTGATCTCTCTGATGGAGGACCAGGTGCTGCAATTG AAGATGTCCAACATCCCCGCTTGCTTCCTGGGTTCCGCTCAAAGTGAGAACGTGCTG ACAGACATCAAGCTGGGCAAGTACCGCATCGTGTACGTGACCCCTGAGTACTGCTCC GGTAACATGGGTCTGCTGCAACAGCTGGAGGCTGACATCGGAATCACCCTGATCGCT GTGGACGAGGCTCACTGCATCTCCGAGTGGGGACACGACTTCCGCGACTCCTTCCGT AAGCTGGGATCCTTGAAGACCGCTCTCCCTATGGTGCCTATCGTGGCCCTGACCGCC ACTGCTTCCTCCTCCATCCGCGAGGACATCGTGCGTTGCCTGAACCTGCGCAACCCT CAGATCACTTGCACCGGTTTCGACCGCCCTAACTTGTACCTCGAGGTGCGTCGCAAG ACCGGTAACATCCTCCAGGACCTGCAGCCTTTCCTGGTCAAGACCTCCTCCCACTGG GAATTTGAGGGCCCTACCATCATCTACTGCCCTTCCCGCAAGATGACCCAGCAAGTC ACCGGCGAGCTGCGCAAGCTCAACCTCTCCTGCGGTACCTACCACGCTGGTATGTCC TTCTCCACCCGCAAGGACATCCACCACCGCTTCGTCCGTGACGAAATCCAATGCGTC ATCGCTACCATCGCTTTCGGAATGGGCATCAACAAGGCTGACATCCGCCAGGTGATC CACTACGGCGCCCCCAAGGACATGGAATCCTACTACCAGGAAATCGGTCGCGCCGG TCGCGACGGTCTGCAGTCTTCCTGTCACGTGCTGTGGGCCCCCGCTGACATCAACCT GAACCGCCACCTGCTGACCGAAATCCGCAACGAGAAGTTCCGCCTGTACAAGCTCA AGATGATGGCTAAGATGGAGAAGTACCTGCACTCCTCCCGCTGTCGCCGTCAGATCA TCCTCTCCCACTTCGAGGACAAGCAAGTGCAAAAGGCTAGCCTGGGTATCATGGGC ACCGAAAAGTGTTGTGACAACTGCCGCTCCCGCCTCGACCACTGCTACTCCATGGAC GACAGCGAGGACACCTCCTGGGACTTCGGTCCTCAAGCTTTCAAGCTCTTGTCCGCT GTGGACATCCTGGGCGAGAAGTTCGGTATCGGTCTCCCCATCCTCTTCCTGCGTGGT AGCAACTCCCAACGCCTGGCTGACCAGTACCGCCGCCACTCCCTCTTCGGTACCGGT
AAGGACCAGACCGAGTCCTGGTGGAAGGCTTTCTCTCGCCAACTGATCACCGAAGG TTTCCTGGTGGAGGTGTCCCGCTACAACAAGTTCATGAAGATCTGCGCTCTCACTAA GAAGGGAAGGAACTGGCTGCACAAGGCTAACACTGAGTCCCAATCCCTCATCCTGC
AGGCTAACGAGGAGCTGTGCCCTAAGAAGTTCCTGCTGCCTTCCTCCAAGACCGTGT CCTCCGGAACAAAGGAACACTGCTACAACCAAGTCCCTGTGGAGCTCTCCACCGAG AAGAAGTCCAACCTGGAGAAGCTGTACAGCTACAAGCCTTGCGACAAGATCAGCTC
CGGTTCCAACATCAGCAAGAAGTCCATCATGGTGCAATCCCCTGAAAAGGCCTACTC CAGCTCCCAACCTGTCATCTCCGCTCAAGAGCAAGAGACCCAGATCGTGCTGTACGG TAAGCTGGTCGAAGCCCGCCAAAAGCACGCTAACAAGATGGACGTCCCTCCCGCTA TCCTCGCCACCAACAAGATCCTCGTGGATATGGCTAAGATGCGCCCCACCACCGTCG AGAACGTGAAGCGCATCGACGGTGTCTCCGAGGGTAAGGCCGCTATGCTGGCTCCT CTGCTGGAAGTGATCAAGCACTTCTGCCAGACCAACTCCGTGCAGACCGACCTGTTC AGTAGTGAGAACCTGTACTTCCAAGGCCACCATCATCATCATCATCACCACTAA [00394] Protein sequence of WRN-BV08 [pFastBacl-WRN-(517-1235 L1074F)-TEV-8His] (SEQ ID NO.: 4)
MNEGEEDDDKDFLWPAPNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMA TGYGKSLCFQYPPVYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL GKYRIVYVTPEYCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTA LPMVPIVALT AT AS S SIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFL VKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRD EIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI NLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGT EKCCDNCRSRLDHCYSMDDSEDTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQ RLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNW LHKANTESQSLILQANEELCPKKFLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEKLY SYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHANK MDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQTNSV QTDLF S SENLYFQGHHHHHHHH
[00395] Sf9 cells grown in SF900II media were infected with 1.200 WRN-BV08 P2 virus and incubated for protein expression for 72 h at 27°C. The WRN protein was purified using the following protocol. The cell pellets were thawed and resuspended in buffer A (50 mM Tris, pH 7.5, 500 mM NaCl, 1 mM TCEP, 10% Glycerol) supplemented with 0.5% CHAPS, ImM PMSF, Ipg/ml Leupeptin, Ipg/ml Pepstatin, and the Pierce Universal Nuclease and cocktail tablet. Cleared lysates were loaded onto a Ni Sepharose™ excel column and washed with buffer A and bound protein was eluted with buffer A supplemented with 300 mM imidazole. The eluted protein was dialyzed against buffer A and digested by His-tagged TEV (1 :5 ratio) overnight at 4°C. ZnCh was added into the sample at final 15pM before loading onto a second Ni Sepharose™ excel column. Untagged WRN protein was eluted from the column with buffer A supplemented with 20 mM imidazole, dialyzed overnight into buffer B (50 mM Tris, pH 7.5, 1 mM TCEP, 10% Glycerol) supplemented with 150 mM NaCl and loaded onto a Heparin column. Proteins were eluted with a step gradient of buffer B supplemented with 150 mM, 200 mM, 300 mM and 500 mM NaCl. WRN containing fractions were pooled and concentrated prior to loading on to size exclusion chromatography using a HiLoad 16/600 Superdex TM 200 pg column (GE Healthcare) in buffer C (20 mM HEPES, pH 7.5, 250 mM NaCl, 0.25 mM TCEP, 2.5% Glycerol).
[00396] The resultant IC50 results obtained for the tested compounds are shown below in Table 3. Compounds with an IC50 less than or equal to 0.005 pM are designated as “A.” Compounds with an IC50 greater than 0.005 pM and less than or equal to 0.05 pM are designated as “B ” Compounds with an IC50 greater than 0.05 pM and less than or equal to 0.1 pM are designated as “C.” Compounds with an IC50 greater than 0.1 pM or equal to 0.5 pM are designated as “D.”
Table 3
Figure imgf000200_0001
Example 3: Method for determining effect on p21 induction in cells.
[00397] The colon carcinoma cell line HCT116 was obtained from ATCC and cultured in growth medium consisting of Mccoy's 5A Medium (Gibco 16600108) supplemented with 10% FBS (Transgene FS201-02) and 100 units/mL penicillin-streptomycin (Gibco 15140122) and maintained at 37 °C under 5% CO2. On the day of seeding, 2,000 cells in 30pL of culture media were plated per well to Poly-D-Lysine 384 Well Black Clear Plates (Biocoat 356663) and incubated overnight at 37 °C under 5% CO2. The following day, compounds were serially diluted in DMSO for a total of 11 test concentrations. The typical starting concentration of cpds was lOuM with 2-fold dilutions. Next, 150nL of diluted compound was added in duplicate to the assay plate, using an Echo 655 (Labcyte). The plate was centrifuged at 500 RPM for 1 min and then incubated at 37 °C under 5% CO2 for 24h. After 24h, medium was removed, and cells were fixed by adding 40pL of 4% paraformaldehyde solution to each well and incubated for 20 min at room temperature. The plate was then washed 4 times with lOOpL per well of wash buffer (PBS with 0.1% Tween- 20) using a microplate washer. Next, 30pL of ice-cold methanol was added to each well and the plate was incubated at -20 °C for 10 min. The plate was washed 4 times with lOOpL per well of wash buffer by a microplate washer, then 30pL per well of blocking buffer ((Intercept PBS blocking buffer (LI-COR 927-70001) with 0.05% Tween-20)) was added and the plate was incubated at room temperature with shaking for 2h. Next, to each test well, 20pL of primary antibody solution ((p21 Wafl/CIP (12D1) Rabbit mAb (Cell Signaling Technologies 2947) diluted 1 : 1000 and GAPDH (D4C6R) Mouse mAb (Cell Signaling Technologies 97166) diluted 1 :2000 in blocking buffer)) was added and the plate was placed at 4 °C, overnight. The following day, the plate was washed 5 times with lOOpL per well of wash buffer using a microplate washer for 5 min. 20pL per well of secondary antibody ((IRDye 680CW Goat anti-Mouse IgG (H+L) (LI-COR 926- 68070) diluted 1: 2000 in Blocking Buffer and IRDye 800CW Goat anti-Rabbit IgG (H+L) (LI- COR 926-32211) diluted 1 : 2000 in Blocking Buffer)) was then added and the plate was stored for 2h in the dark at room temperature with shaking. The plate was then washed 4 times with lOOpL per well of wash buffer again using a microplate washer. Finally, the p21 signal and the GAPDH signal were quantified using a LI-COR Odyssey CLx Imager machine reading at 800nm and 700nm, respectively. Each plate contained DMSO control (low control) and an internal reference WRN inhibitor (high control) respectively. For quantitation, the 800nm/700nm ratio was calculated for each well to give fold p21 induction and then percent activation for each compound well was calculated as follows ((100 x (ratio cpd well-ratio low control)/(ratio high control - ratio low control)). EC50 values for each compound was generated after non-linear regression curve fitting using commercially available software.
[00398] The resultant EC50 results obtained for the tested compounds are shown below in Table 4. Compounds with an EC 50 less than or equal to 0.50 pM are designated as “A.” Compounds with an EC50 greater than 0.50 pM and less than or equal to 2.00 pM are designated as “B.” Compounds with an EC50 greater than 2.00 pM and less than or equal to 5.00 pM are designated as “C ” Compounds with an EC so greater than 5.00 pM are designated as “D ”
Table 4
Figure imgf000201_0001
Figure imgf000202_0001

Claims

CLAIMS We Claim:
1. A compound of Formula I”, or a pharmaceutically acceptable salt thereof:
Figure imgf000203_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein - denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is
N;
L is a linker selected from
Figure imgf000203_0002
R1 is selected from groups a) to e): a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, Ci-Cealkyl, haloCi-Cealkyl, Cj-Cecycloalkyl, Ci-Cealkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3-C7 cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is selected from C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2C(O)N(R)R2A, C(RB)2C(RB)2N(R)C(O) N(R)R2A, and C(RB)2C(RB)2N(R)C(O)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl, pyridyl, cubanyl, a saturated or partially unsaturated 4-8 membered monocyclic ring, a saturated or partially unsaturated bridged, fused, or spirocyclic 5-, 6-, 7-, 8-, 9-, 10-, 11-, or 12-membered ring, wherein said saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring contains 0, 1, 2, 3, or 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and wherein said phenyl, pyridyl, cubanyl, saturated or partially unsaturated monocyclic ring, or saturated or partially unsaturated bridged, fused, or spirocyclic ring are each optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, C3-C6cycloalkoxy, haloC3-C6- cycloalkoxy and –SF5; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is substituted with 0-5 independently selected halogen, and wherein 2 substituents on the same atom of said saturated or partially unsaturated monocyclic ring or saturated or partially unsaturated bridged, fused, or spirocyclic ring form a cyclic group selected from: ^ an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclyl, and ^ an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a Ci-C4alkyl, Ci-C4alkoxy, or Cs-Cecycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, Ci-C4alkyl, Ci-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4- 7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
2. A compound of Formula I, or a pharmaceutically acceptable salt thereof:
Figure imgf000207_0001
wherein Ring A represents: a) a 4-7 membered saturated or partially unsaturated bivalent monocyclic ring system selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or b) a 4-12 membered saturated or partially unsaturated bivalent bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclylene or heterocyclylene (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); wherein Ring A is substituted with 0-4 independently selected RA substituents; each of Z and Y is selected from N and S, wherein the 5-membered ring comprising Z and Y is aromatic; wherein ----- denotes a single or double bond and wherein Y is N and Z is S, or Y is S and Z is N; L is a linker selected from ; R1 is selected from group
Figure imgf000208_0001
a) a 5-6 membered monocyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6alkyl, haloC1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3- C6cycloalkoxy, wherein said 5-6 membered heteroaryl is further substituted with 0-3 independently selected RA; b) a 9-10 membered bicyclic heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, and C3-C6cycloalkoxy, wherein said 9-10 membered bicyclic heteroaryl is further substituted with 0-3 independently selected RA; c) a 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted with 1 or 2 groups independently selected from C1-C6alkyl, C3-C6cycloalkyl, C1-C6alkoxy, C3-C6cycloalkoxy, and -OR, wherein said 4-7 membered saturated or partially unsaturated monocyclic heterocyclyl is further substituted with 0-3 independently selected RA; d) a 4-12 membered saturated or partially unsaturated bicyclic ring system that is fused, bridged, or spirocyclic selected from carbocyclyl or heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), wherein said carbocyclyl or heterocyclyl is substituted with 0-3 independently selected RA; and e) H, halogen, C1-C6aliphatic, C3-C7cycloalkyl, C1-C6alkylene-O-C1-C6alkyl, CN, -OR, - NR10R11, -C(O)NR10R11, -CH2NR10R11, -SO2R12, wherein the C1-C6aliphatic, C3-C7 cycloalkyl, or C1-C6alkylene-O-C1-C6alkyl is substituted with 0-5 independently selected RA; R10 is H, C1-C6aliphatic, haloC1-C6alkyl, C3-C6cycloalkyl, haloC3-C6cycloalkyl, –C(O)C3- C6cycloalkyl, –C(O)C1-C6alkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from RA; R11 is H, C1-C6aliphatic, or C3-C6cycloalkyl, or R10 and R11 may combine to form a 5-6 membered ring optionally substituted with 1, 2, or 3 substituents independently selected from halogen, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy; R12 is C1-C6aliphatic, C3-C6cycloalkyl, or a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1 or 2 groups independently selected from halogen, C1-C6aliphatic, haloC1-C6alkyl, C1-C6alkoxy, C3- C6cycloalkyl, and C3-C6cycloalkoxy; RA is independently selected at each occurrence from the group consisting of optionally substituted phenyl, optionally substituted 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), optionally substituted 4-7 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), halogen, optionally substituted C1-C6aliphatic, hydroxy-C1-C6alkyl, haloC1- C6alkyl, an optionally substituted C3-C6cycloalkyl, haloC3-C6cycloalkyl, an optionally substituted C1-C6alkoxy, haloC1-C6alkoxy, an optionally substituted C3-C6cycloalkoxy, haloC3- C6cycloalkoxy, C1-C6alkylene-O-C1-C6alkyl, –CN, –NO2, oxo, –OR, – SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)S(O)2NR2, and – N(R)S(O)2R; R2 is C(RB)2C(O)N(R)R2A; RB is independently selected at each occurrence from hydrogen, -CH3, and -CH2CH3, or two RB taken together with the carbon to which they are attached form a cyclopropyl ring; R2A is phenyl or pyridyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, haloC1-C4alkoxy, and –SF5; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered carbocyclyl fused to the phenyl or pyridyl; or two substituents on adjacent atoms of the phenyl or pyridyl together with said adjacent atoms form a 4-7 membered heterocyclyl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) fused to the phenyl or pyridyl, wherein said 4-7 membered carbocyclyl or 4-7 membered heterocyclyl is substituted with 0-5 independently selected halogen; or R2A is 2-benzimidazolyl, 2-naphthyl, or 3-quinolinyl, each of which is optionally substituted with 1, 2, or 3 substituents independently selected from halogen, C1-C4aliphatic, haloC1-C4alkyl and - OH; R3 is hydrogen, C1-C4aliphatic, C3-C5cycloalkyl, C1-C4alkoxy, -NHR3A, -N(R3A)2, or C1- C4alkylthio, each of which, besides hydrogen, is optionally substituted with -OH, 1-5 independently selected halogen, -OR, -C(O)NR10R11, or N(R)C(O)R; each R3A is independently selected at each occurrence from C1-C4alkyl; R4 is phenyl or a first 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) wherein said phenyl or first 5-6 membered heteroaryl are substituted with 0-5 RA or two substituents on adjacent atoms of said phenyl or first 5-6 membered heteroaryl together with said adjacent atoms form a 4-7 membered carbocyclyl, a 4-7 membered heterocyclyl, or a second 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to the phenyl or first 5-6 membered heteroaryl wherein said 4-7 membered carbocyclyl, 4-7 membered heterocyclyl, or second 5-6 membered heteroaryl are substituted with 0-3 RA; or R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, oxo, NH2, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy; each R is independently hydrogen, or an optionally substituted Ci-ealiphatic group, an optionally substituted phenyl, an optionally substituted 3-7 membered saturated or partially unsaturated carbocyclic ring, an optionally substituted 3-7 membered saturated or partially unsaturated heterocyclic ring (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), or an optionally substituted 5-6 membered heteroaryl ring (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur); or two R groups on the same atom are taken together with the same atom to form an optionally substituted 4-7 membered saturated ring, 4-7 membered partially unsaturated ring, or 5-6 membered heteroaryl ring (wherein said 4-7 membered saturated ring and 4-7 membered partially unsaturated ring has 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur and wherein said 5-6 membered heteroaryl ring has 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur).
3. The compound of claim 1 or claim 2, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula I is a compound of Formula I-a or Formula I-b:
Figure imgf000211_0001
I-a I-b wherein:
R4 is selected from one of a), b), and c): a) R4 is a Ring B that is selected from the group consisting of
wher
Figure imgf000212_0001
rein said L is bonded to Ring A in Formula I-a or Formula I-b; and wherein: any substituents that are present on Ring B selected from R4A, R4B, R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; C1-C4alkoxy; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4A and R4B, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4C, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4B and R4C, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4D, R4E, and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4C and R4D, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4A, R4B, R4E and R4F are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E is halogen or -OH, and R4A, R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1- C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4E and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or - OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; or R4F and R4A, along with their intervening atoms, join to form 4-7 membered optionally substituted carbocyclyl, 4-7 membered optionally substituted heterocyclyl, or 5-6 membered optionally substituted heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) that is fused to Ring B; and any substituents that are present on Ring B selected from R4B, R4C, and R4D are each independently selected from hydrogen; halogen; -OH; -CN; C1-C4alkyl; C2-C4alkenyl; C2-C4alkynyl; haloC1- C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3- C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and
R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; R14 is hydrogen or NR13R14 forms a heterocyclic ring selected from azetidinyl, pyrrolidinyl, or piperidinyl, said heterocyclic ring optionally substituted with -CH3; or b) _R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy; or c)_R4 is a C1-C4alkyl, C1-C4alkoxy, or C3-C6cycloalkyl, each of which is substituted with 0-3 groups independently selected from halogen, -CN, -OH, C1-C4alkyl, C1-C4alkoxy, optionally substituted 5-6 membered heterocyclyl, and optionally substituted 5-6 membered heterocyclyloxy. 4. The compound of any one of claims 1-3, wherein the compound of Formula I is of Formula VII-a or Formula VII-b:
Figure imgf000214_0001
or a pharmaceutically acceptable salt thereof. 5. The compound of any one of claims 1-4, or a pharmaceutically acceptable salt thereof, wherein Ring A is selected from
,
Figure imgf000215_0001
6. The compound of any one of claims 1-5, wherein R1 is halogen, C1-C6 alkyl, C2-C4alkene, C2-C4alkyne, CN, -OR10, -NR10R11, –C(O)NR10R11, –CH2NR10R11, –SO2R12, or a 3-7 membered carbocyclyl, wherein C1-C6 alkyl, C2-C4 alkene, C2-C4alkyne, and 3-7 membered carbocyclyl are substituted with 0-3 substituents independently selected from halogen, C3-C6cycloalkyl, haloC3- C6cycloalkyl, -OH, -CN, C1-C4alkoxy, and haloC1-C4alkoxy.
7. The compound of any one of claims 1-5, wherein R1 is a 5-6 membered heteroaryl (having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur) optionally substituted with 1-3 groups independently selected from halogen, C1-C6 alkyl, haloC1-C6alkyl, C1-C6alkoxy, and C3-C6cycloalkyl, wherein said 5-6 membered heteroaryl is further substituted with 0-3 independently selected RA.
8. The compound of any one of claims 1-5, wherein R1 is pyridyl substituted with C1- C4alkoxy and further substituted with 0-2 RA.
9. The compound of any one of claims 1-5, wherein R1 is 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur, and 0 or 1 additional ring nitrogen atoms), wherein said 5-membered heteroaryl is substituted with a halogen, C1-C6alkyl, haloC1-C6alkyl, C1-C6alkoxy, or C3-C6cycloalkyl, and further substituted with 0-2 independently selected RA.
10. The compound of any one of claims 1-5, wherein R1 is a) a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted C1-C4aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen; or b) a 6-8 membered saturated or partially unsaturated bridged bicyclic heterocyclyl (having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted Ci-C4aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
11. The compound of any one of claims 1-5, wherein R1 is a 5-6 membered saturated or partially unsaturated heterocyclyl (having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur), said heterocyclyl substituted with 0-2 groups independently selected from halogen, oxo, -NR2, optionally substituted Ci-C4aliphatic, -OR, azetidinyl optionally substituted with 1 or 2 independently selected halogen, and pyrrolidinyl optionally substituted with 1 or 2 independently selected halogen.
12. The compound of any one of claims 1-5, wherein R1 is selected from the group consisting of:
Figure imgf000216_0001
13. The compound of any one of claims 1-12, wherein R4 is Ring B of the following structure: OH * R4A wherein *
Figure imgf000217_0001
R4A is hydrogen, halogen, -CH3, -CH2CH3, -F, -CF2H, -CF3, -OCH3, -OCF3, -OCH2CH3, or - OCHF2; R4B, R4C and R4D are each independently selected from hydrogen; halogen; -CN; C1-C4alkyl; C2- C4alkenyl; C2-C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1-C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; and R14 is hydrogen; or R13 and R14 are taken together with the nitrogen atom to which they are attached to form a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl; wherein the heterocyclic ring is optionally substituted with -CH3; or R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1- C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy.
14. The compound of any one of claims 1-12, wherein R4 is:
Figure imgf000217_0002
wherein * is a point of attachment to L in Formula I; wherein: R4A is hydrogen, halogen, -CH3, -CH2CH3, -F, -CF2H, -CF3, -OCH3, -OCF3, -OCH2CH3, or - OCHF2; R4B and R4C are each independently selected from hydrogen; -CN; C1-C4alkyl; C2-C4alkenyl; C2- C4alkynyl; haloC1-C4alkyl; C1-C3alkyl substituted with -OH, -OCH3, or -OCH2CH3; haloC1- C4alkoxy; C3-C6cycloalkyl; C3-C6cycloalkoxy; and NR13R14; and R13 is independently selected at each occurrence from hydrogen and C1-C4alkyl optionally substituted with -OH, -OCH3, or -OCH2CH3; and R14 is hydrogen; or R13 and R14 are taken together with the nitrogen atom to which they are attached to form a heterocyclic ring selected from azetidinyl, pyrrolidinyl, and piperidinyl; wherein the heterocyclic ring is optionally substituted with -CH3.
15. The compound of any one of claims 1-12, wherein R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms), wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3-C6cycloalkyl, and C1-C4alkoxy.
16. The compound of any one of claims 1-12, wherein R4 is a 5-membered heteroaryl (having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur and 0, 1, 2, or 3 additional ring nitrogen atoms) selected from the group consisting of imidazolyl, pyrazolyl, tetrazolyl, thiazolyl, isothiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, oxazolyl, isoxazolyl, 1,2,4- oxadiazolyl, 1,2,3-triazolyl, and 1,2,4-triazolyl, wherein said heteroaryl is substituted with 0-4 groups independently selected from halogen, -OH, -CN, C1-C4alkyl, haloC1-C4alkyl, C3- C6cycloalkyl, and C1-C4alkoxy.
17. The compound of claim 16, wherein R4 is an isoxazolyl substituted with -OH or C1- C4alkoxy.
18. The compound of any one of claims 1-12, wherein R4 is , ,
Figure imgf000218_0001
Figure imgf000219_0001
19. The compound of any one of claims 1-18, wherein R2A is phenyl comprising a -CF3 substituent or pyridyl comprising a -CF3 substituent.
20. The compound of any one of claims 1-18, wherein R2 is
Figure imgf000220_0001
21. The compound of claim 1, or any one of claims 3-18, wherein R2 is
Figure imgf000220_0002
22. The compound of any one of claims 1-21, wherein R3 is Ci-C4alkyl or Cs-Cscycloalkyl.
23. The compound of any one of claims 1-22, wherein Ring A and the 0-4 independently selected RA substituents with which Ring A is substituted is selected from
Figure imgf000220_0003
24. The compound of any one of claims 1-22, wherein Ring A and the 0-4 independently selected RA substituents with which Ring A is substituted, is:
Figure imgf000220_0004
25. The compound of any one of claims 1-22, wherein Ring A is:
Figure imgf000220_0005
26. The compound of any one of claims 1-22, wherein Ring A is:
Figure imgf000221_0001
27. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein the compound is N-(2-chloro-4-(trifluoromethyl)phenyl)-2-(5-ethyl-6-(4-(5-hydroxy-6- methylpyrimidine-4-carbonyl)piperazin-l-yl)-2-(2-methoxypyridin-4-yl)-7-oxothiazolo[5,4- b]pyridin-4(7H)-yl)acetamide.
28. A pharmaceutical composition comprising a compound or pharmaceutically acceptable salt thereof according to any one of claims 1- 27, and one or more pharmaceutically acceptable carriers.
29. A method of treating cancer in a subject, wherein the cancer is characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR), comprising administering to the subject a therapeutically effective amount of a compound according to any one of claims 1-27, or a pharmaceutically acceptable salt thereof.
30. A method of modulating WRN activity in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound according to any one of claims 1-27, or a pharmaceutically acceptable salt thereof.
31. A method of treating a disorder or disease which can be treated by WRN inhibition in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound according to any one of claims 1-27, or a pharmaceutically acceptable salt thereof.
32. A method of inhibiting WRN in a subject, wherein the method comprises administering to the subject a therapeutically effective amount of the compound according to any one of claims 1- 27, or a pharmaceutically acceptable salt thereof.
33. The method of claim 31, wherein the disorder or disease is a cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR).
34. The method of claim 33, wherein the cancer characterized as microsatellite instability-high (MSI-H) or mismatch repair deficient (dMMR) is selected from colorectal, gastric, prostate, endometrial, adrenocortical, uterine, cervical, esophageal, breast, kidney and ovarian cancer.
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US12344609B2 (en) 2023-06-08 2025-07-01 Nimbus Wadjet, Inc. WRN inhibitors
US12421233B2 (en) 2023-06-08 2025-09-23 Nimbus Wadjet, Inc. WRN inhibitors
US12528806B2 (en) 2023-06-08 2026-01-20 Nimbus Wadjet, Inc. WRN inhibitors
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