WO2025032496A1 - Sialylation de glycosphingolipides - Google Patents

Sialylation de glycosphingolipides Download PDF

Info

Publication number
WO2025032496A1
WO2025032496A1 PCT/IB2024/057597 IB2024057597W WO2025032496A1 WO 2025032496 A1 WO2025032496 A1 WO 2025032496A1 IB 2024057597 W IB2024057597 W IB 2024057597W WO 2025032496 A1 WO2025032496 A1 WO 2025032496A1
Authority
WO
WIPO (PCT)
Prior art keywords
glycosphingolipid
enzyme
sialylated
activity
formula
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
PCT/IB2024/057597
Other languages
English (en)
Inventor
Anna SZEKRENYI
Iria GRUNDLING
Alexander DENNIG
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Carbocode SA
Carbocode SA
Original Assignee
Carbocode SA
Carbocode SA
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Carbocode SA, Carbocode SA filed Critical Carbocode SA
Priority to CN202480050748.4A priority Critical patent/CN121620596A/zh
Publication of WO2025032496A1 publication Critical patent/WO2025032496A1/fr
Anticipated expiration legal-status Critical
Pending legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H15/00—Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
    • C07H15/02—Acyclic radicals, not substituted by cyclic structures
    • C07H15/04—Acyclic radicals, not substituted by cyclic structures attached to an oxygen atom of the saccharide radical
    • C07H15/10—Acyclic radicals, not substituted by cyclic structures attached to an oxygen atom of the saccharide radical containing unsaturated carbon-to-carbon bonds
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/24—Hydrolases (3) acting on glycosyl compounds (3.2)
    • C12N9/2402—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/24—Hydrolases (3) acting on glycosyl compounds (3.2)
    • C12N9/2402—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
    • C12N9/2468—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1) acting on beta-galactose-glycoside bonds, e.g. carrageenases (3.2.1.83; 3.2.1.157); beta-agarase (3.2.1.81)
    • C12N9/2471—Beta-galactosidase (3.2.1.23), i.e. exo-(1-->4)-beta-D-galactanase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/18—Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/26—Preparation of nitrogen-containing carbohydrates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/44—Preparation of O-glycosides, e.g. glucosides
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Y—ENZYMES
    • C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
    • C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
    • C12Y302/01018—Exo-alpha-sialidase (3.2.1.18), i.e. trans-sialidase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Y—ENZYMES
    • C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
    • C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
    • C12Y302/01023—Beta-galactosidase (3.2.1.23), i.e. exo-(1-->4)-beta-D-galactanase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10—Transferases (2.)
    • C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

Definitions

  • the present invention relates to a novel and efficient method for the sialylation of glycosphingolipids.
  • Glycosphingolipids are glycoconjugates wherein a glycan moiety is linked to the 1-hydroxyl group of a ceramide or a sphingoid base via a glycosidic linkage.
  • GSLs are involved in diverse biological processes and play important structural and functional roles such as cell-cell recognition, communication, and intercellular adhesion.
  • sialylated glycosphingolipids such as gangliosides are found in the brain, and can play roles in neurological diseases especially Alzheimer's, Parkinson's, and Huntington's diseases.
  • certain gangliosides are found in the intestinal mucosa and can promote intestinal health, as well as act as anti- infective agents.
  • Sialylated glycosphingolipids such as gangliosides hold great potential as therapeutics, and as food ingredients however they are not readily available for fundamental and clinical research. In fact, they are characterized by a high structural complexity and their preparation represents a challenge.
  • Sialylated glycosphingolipids may be extracted from animal brains, or animal epidermal tissues (EP 3095451 Al, US 5532141 A).
  • extraction and isolation of sialylated glycosphingolipids from animal sources is a laborious and costly process, and typically yields the desired compounds in low amounts and with low purities.
  • the obtained sphingolipids may be potentially unsafe due to the presence of hazardous biological contaminants.
  • sialylated glycosphingolipids may be obtained via chemical synthesis (J. A. Morales-Serna, Carbohydr. Res. 2007), wherein typically the glycan moiety is first synthesised and then coupled to a ceramide or a sphingoid base.
  • Drawbacks connected to this approach are the control of stereo- and regiochemistry, the need for multiple protecting group manipulations, difficult purification and scale-up.
  • the present invention relates to a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid is a compound of formula (1):
  • W is Gaipi-, or a glycosyl moiety carrying one or more terminal p-galactopyranosyl units,
  • R 1 is hydrogen, aryl, or a substituted or unsubstituted C1-50 alkyl, preferably a substituted or unsubstituted C1-17 alkyl, more preferably a substituted or unsubstituted C10-17 alkyl,
  • R 2 is hydrogen or -OR 5 , wherein R 5 is selected from hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted C2-6 acyl, preferably R 5 is hydrogen, the bond - may be a double or a single bond when R 2 is hydrogen, or is a single bond when R 2 is -OR 5 ,
  • R 3 is hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted Ci.g acyl, preferably hydrogen,
  • R 4 is selected from hydrogen, a substituted or unsubstituted aryl, a heteroalkyl, a substituted or unsubstituted C2-32 acyl, and wherein the sialic acid donor is 3'-sialyllactose.
  • Figure 1 shows a schematic diagram of a sialyltransferase cycle wherein CMP-Neu5Ac is generate/regenerated.
  • Figure 2 shows a schematic diagram of a sialyltransferase cycle wherein CMP-Neu5Ac is generated/regenerated, and ATP is regenerated.
  • sialylated glycosphingolipids can be produced in- vitro via a trans-sialidase catalysed sialylation of a glycosphingolipid acceptor using readily available and inexpensive 3'-sialyllactose as the sialic acid donor, and wherein the glycosphingolipid acceptor is preferably obtained via synthetic and/or biotechnological approaches.
  • the trans-sialidase catalysed sialylation may be performed in the presence of a p-galactosidase and may include a nanofiltration step.
  • the trans-sialidase catalysed sialylation may be followed by a further sialylation step catalysed by a sialyltransferase, wherein the expensive nucleotide donor is generated in-situ and regenerated during the sialyltransferase cycle.
  • the method is characterized by high yields, high selectivity, and the desired product is obtained with high purity. Therefore, the method is suited for the large-scale production of sialylated glycosphingolipids such as gangliosides, the method comprising the following steps:
  • glycosphingolipid is a compound of formula (1):
  • W is Gaipi-, or a glycosyl moiety carrying one or more terminal p-galactopyranosyl units
  • R 1 is hydrogen, aryl, or a substituted or unsubstituted C1-50 alkyl, preferably a substituted or unsubstituted C1-17 alkyl, more preferably a substituted or unsubstituted C10-17 alkyl
  • R 2 is hydrogen or -OR 5 , wherein R 5 is selected from hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted C2-6 acyl, preferably R 5 is hydrogen, the bond - may be a double or a single bond when R 2 is hydrogen, or is a single bond when R 2 is -OR 5 ,
  • R 3 is hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted Ci.g acyl, preferably hydrogen,
  • R 4 is selected from hydrogen, a substituted or unsubstituted aryl, a heteroalkyl, a substituted or unsubstituted C2-32 acyl, and wherein the sialic acid donor is 3'-sialyllactose.
  • glycosphingolipid a glycosphingolipid
  • alkyl refers to an acyclic straight or branched hydrocarbyl group having 1-50 carbon atoms which may be saturated or contain one or more double and/or triple bonds (so, forming for example an alkenyl or an alkynyl), and/or which may be substituted or unsubstituted, as herein further described.
  • alkyl examples include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, isobutyl, n-butyl, sec-butyl, tert-butyl, isopentyl, n-pentyl, neo-pentyl, n-hexyl, ethenyl, propenyl, 1- butenyl, 2-butenyl, isobutenyl,l-pentenyl, 2-pentenyl, 2-methyl-l-butenyl, 3-methyl-l-butenyl, 2- methyl-2-butenyl, 1-hexenyl, 2-hexenyl, 3-hexenyl, methylpentenyl, dimethylbutenyl, ethynyl, propynyl, 1-butynyl, 2-butynyl, pentynyl, and hexynyl, each of which may be substitute
  • aryl refers to an aromatic cyclic hydrocarbyl group having 5-14 ring carbon atoms, which may be mono- or polycyclic, which may contain fused rings, preferably 1 to 3 fused or unfused rings, and which may contain one or more heteroatoms, and/or which may be substituted or unsubstituted, as herein further described.
  • aryl examples include, but are not limited to, phenyl, naphtyl, anthracyl, phenantryl, pyrrolyl, imidazolyl, thiophenyl, furanyl, oxazolyl, thiazolyl, pyridinyl, pyrimidinyl, pyrazinyl, triazinyl, and benzofuranyl, each of which may be substitute or unsubstituted.
  • aryl refers to a substituted or unsubstituted phenyl.
  • acyl refers to a group derived by the removal of one or more hydroxyl group from an oxoacid, preferably from a carboxylic acid.
  • the acyl group according to the present invention is typically a saturated or unsaturated C2-32 acyl, which may be substituted or unsubstituted.
  • substituted means that the group in question is substituted with a group which typically modifies the general chemical characteristics of the group in question.
  • the substituents can be used to modify characteristics of the molecule, such as molecule stability, molecule solubility and the ability of the molecule to form crystals.
  • suitable substituents of a similar size and charge characteristics which could be used as alternatives in a given situation.
  • alkyl In connection with the terms “alkyl”, “aryl”, and “acyl” the term substituted means that the group in question is substituted one or several times, preferably 1 to 3 times, with group(s) selected from hydroxy (which when bound to an unsaturated carbon atom may be present in the tautomeric keto form), oxo, Ci.g-alkoxy (i.e.
  • Ci.g-alkyl-oxy C2-s-alkenyloxy, carboxy, oxo, Ci.g- alkoxycarbonyl, Ci.g- alkylcarbonyl, formyl, aryl, aryloxycarbonyl, aryloxy, arylamino, arylcarbonyl, heteroaryl, heteroarylamino, heteroaryloxycarbonyl, heteroaryloxy, heteroarylcarbonyl, amino, mono- and di(Ci-6- alkyl)amino, carbamoyl, mono- and di(Ci-6-alkyl)aminocarbonyl, amino-Ci.g-alkyl-aminocarbonyl, mono- and di(Ci-6-alkyl)amino-Ci-6-alkyl-aminocarbonyl, Ci.g-alkylcarbonylamino, cyano, guanidino, carbamido, Ci-g-alkyl-sulphonyl-amino,
  • alkyl the term “substituted” preferably means that the group in question is substituted one or several times, preferably 1 to 3 times, with group(s) selected from a hydroxyl group, an alkoxy group, an acyloxy group, an acylamido group, a thiol, a thioether or a phosphorus- containing functional group.
  • the term "functional analogue” refers to a protein wherein the amino acid sequence has a certain percent homology compared to the amino acid sequence of a reference protein (i.e. about 30% homology, preferably about 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or higher homology over a specified region, for example over a region of at least about 25, 50, 75, 100, 150, 200, 250, 500, 1000, or more amino acids, up to the full length sequence, when compared and aligned for maximum correspondence over a comparison window or designated region) and maintains the same functional activity of the reference protein or polypeptide.
  • a reference protein i.e. about 30% homology, preferably about 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%
  • the percent homology may be determined using e.g. a BLAST sequence comparison algorithm, or by manual alignment and visual inspection (see e.g. NCBI website http://www.ncbi.nlm.nih.gov/BLAST/ or the like). Such sequences may be termed "substantially identical".
  • the term functional analogue refers to a mutant protein, a truncated variant of the protein, a recombinant protein, or to a fusion protein which maintains the same functional activity of the reference protein.
  • Amino acid sequences are herein typically defined by the commonly used one-letter code or by their three-letter code, as summarized in Table 1.
  • glycosphingolipid such as those represented by formula (1), (2) and (3).
  • the terms “about”, “around”, or “approximate” are applied interchangeably to a particular value (e.g. "a pH of about 4.5", “a pH around 4.5", or “a pH of approximate 4.5"), or to a range (e.g. "an amount from about 1% to about 99%", “an amount from around 1% to around 99%”, or “an amount from approximate 1% to approximate 99%” ), to indicate a deviation from 0.1% to 10% of that particular value or range.
  • isolated in the context of the present invention, refers to a procedure or a step of the procedure that is applied to separate the desired compound from a mixture comprising said desired compound and other compounds. In this context, the other compounds of the mixture are regarded as contaminants.
  • isolated and “isolation” may be used interchangeably.
  • glycosphingolipid refers to compounds that structurally consist of a glycosyl moiety and a sphingolipid moiety, or analogs thereof.
  • the glycosyl moiety is typically linked to the sphingolipid moiety via a glycosidic bond between the anomeric carbon at the reducing end of the glycosyl moiety and the hydroxyl group at the C-l position of the sphingolipid.
  • the glycosyl moiety of the glycosphingolipid according to the present invention may derive from a monosaccharide or from an oligosaccharide (more than one monosaccharide units), wherein the anomeric carbon of the monosaccharide or the anomeric carbon at the reducing end of the oligosaccharide is engaged in a glycosidic bond with another chemical entity, such as a sphingolipid, and the bond, if not further specified, may be an alpha or a beta glycosidic bond.
  • a glycosyl moiety having more than one monosaccharide unit may represent a linear or a branched structure.
  • the monosaccharide unit is preferably any 5-9 carbon atom sugar, comprising aldoses (e.g. D-glucose, D- galactose, D-mannose, D-ribose, D-arabinose, L-arabinose, D-xylose, etc.), ketoses (e.g. D-fructose, D- sorbose, D-tagatose, etc.), deoxysugars (e.g. L-rhamnose, L-fucose, etc.), deoxy-aminosugars (e.g.
  • aldoses e.g. D-glucose, D- galactose, D-mannose, D-ribose, D-arabinose, L-arabinose, D-xylose, etc.
  • ketoses e.g. D-fructose, D- sorbose, D-tagatose, etc.
  • deoxysugars e
  • the monosaccharide unit can form different cyclic structures such as pyranose (sixmembered) cyclic structures or furanose (five-membered) cyclic structures.
  • the glycosyl moiety derives from a monosaccharide, wherein the monosaccharide is a p-galactoside.
  • the glycosyl moiety derives from an oligosaccharide, wherein the oligosaccharide carries one or more terminal p-galactopyranosyl units.
  • glycosyl moieties according to the present invention may be illustrated in the following style: Gaipi-4Glcl-, wherein the dash (-) represents the point of attachment of the glycosyl moiety and wherein the glycosyl moiety, may be linked via an alpha or a beta glycosidic bond, preferably a beta glycosidic bond.
  • the sphingolipid moiety of the glycosphingolipid of the present invention typically derives from an aliphatic amino alcohol such as a sphingoid base or a ceramide.
  • Sphingoid bases denote in the context of the present invention naturally occurring sphingoid bases, analogues thereof or derivatives thereof.
  • Naturally occurring sphingoid bases are D-erythro-sphingosine (S), 6-hydroxy-D-erythro-sphingosine (H), D-r/bo-phytosphingosine (P) or DL-erythro-dihydrosphingosine (DS), wherein the number of sphingoid carbons may be expressed in parenthesis following the letters S, H, P, and DS.
  • S, H, P, and DS refer to the shorthand nomenclature developed by Motta et al. (1993) Biochim Biophys Acta. 1182:147-151 and expanded by Rabionet (2014) Biochim Biophys Acta. 1841:422- 434 and by Masukawa et al., Journal of Lipid Research, 2008, 49, 1466-1476.
  • o-Erythro- dihydrosphingosine may also be represented by the letter G according to the INCI nomenclature.
  • Ceramides denote in the context of the present invention naturally occurring ceramides, analogues thereof or derivatives thereof. Preferred ceramides are those naturally occurring in humans.
  • Naturally occurring human ceramides [CER] include, but are not limited to, CER[NS], CER[AS], CER[EOS], CER[NH], CER[AH], or CER[EOH], CER[NP], CER[AP], or CER[EOP], CER[NDS], CER[ADS], or CER[EODS],
  • CER[NS] Naturally occurring human ceramides [CER] include, but are not limited to, CER[NS], CER[AS], CER[EOS], CER[NH], CER[AH], or CER[EOH], CER[NP], CER[AP], or CER[EOP], CER[NDS], CER[ADS], or CER[EODS]
  • the letters in brackets refer to the shorthand nomenclature developed by Motta et al.
  • N, A, and EO represent nonhydroxy fatty acids (N), alpha-hydroxy fatty acids (A), and omega-linoleoyloxy fatty acids (EO), respectively, wherein the number of fatty acid carbons and unsaturations may be expressed in parentheses following the letters of N, A, E, and O.
  • the letters, S, H, P, and DS represent o-erythro- sphingosine (S), 6-hydroxy-D-erythro-sphingosine (H), D-ribo-phytosphingosine (P), o-erythro- dihydrosphingosine (DS), respectively, wherein the number of sphingoid carbons may be expressed in parenthesis following the letters S, H, P, and DS.
  • Ceramides, CER[NDS], CER[ADS], or CER[EODS] may also be referred to as CER[NG], CER[AG], or CER[EOG], respectively, wherein the letter G represents the INCI name for D-erythro-dihydrosphingosine.
  • Glycosphingolipids lacking the amide-linked fatty acyl group may also be referred to as lysosphingolipids.
  • glycosphingolipid according to the present invention are typically represented by a glycosphingolipid of formula (1):
  • W is Gaipi-, or a glycosyl moiety carrying one or more terminal p-galactopyranosyl units,
  • R 1 is hydrogen, aryl, or a substituted or unsubstituted C1-50 alkyl, preferably a substituted or unsubstituted C1-17 alkyl, more preferably a substituted or unsubstituted C10-17 alkyl,
  • R 2 is hydrogen or -OR 5 , wherein R 5 is selected from hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted C2-6 acyl, preferably R 5 is hydrogen, the bond - may be a double or a single bond when R 2 is hydrogen, or is a single bond when R 2 is -OR 5 ,
  • R 3 is hydrogen, a substituted or unsubstituted Ci.g alkyl, or a substituted or unsubstituted Ci.g acyl, preferably hydrogen,
  • R 4 is selected from hydrogen, a substituted or unsubstituted aryl, a heteroalkyl, a substituted or unsubstituted C2-32 acyl,
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 and R 4 are hydrogen, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a single bond.
  • R 1 is a C10-C17 1-hydroxyalkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond.
  • the glycosphingolipid of formula (1) is a glycosphingolipid selected from the group consisting of glycosphingolipids of formulas (3), (4), (5), and (6):
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a double bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 is hydrogen, R 4 is a substituted or unsubstituted C16-32 acyl, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a single bond.
  • R 1 is a C10-C17 1-hydroxyalkyl
  • R 2 , and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a double bond.
  • the glycosphingolipid of formula (1) is a glycosphingolipid selected from the group consisting of glycosphingolipids of formulas (7), (8), (9), and (10):
  • W of the glycosphingolipid of formula (1), and of formulas (3)-(10) is a glycosyl moiety selected from the following glycosyl moieties, or salts thereof:
  • W of the glycosphingolipid of formula (1), and of the glycosphingolipids of formulas (3)-(10) is a glycosyl moiety selected from the following glycosyl moieties, or salts thereof:
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein W of the glycosphingolipid of formula (3) is Gaipi-.
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein the glycosphingolipid of formula (3) is psychosine.
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein W of the glycosphingolipid of formula (3) is Gaipi-4Glcpi-. Accordingly, in some preferred embodiments, the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein the glycosphingolipid of formula (3) is lactosyl D-erythro-sphingosine.
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein W of the glycosphingolipid of formula (3) is Gaipi-3GalNAcpi-4(Neu5Aca2-3)Gaipi-4Glcpi-. Accordingly, in some embodiments, the glycosphingolipid of formula (1) is a glycosphingolipid of formula (3), and wherein the glycosphingolipid of formula (3) is /V-lyso-GMla. In some embodiments, the glycosphingolipid of formula (1) is a glycosphingolipid of formula (7), and wherein W of the glycosphingolipid of formula (7) is Gaipi-.
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (7), and wherein W of the glycosphingolipid of formula (7) is Gaipi-4Glcpi-.
  • the glycosphingolipid of formula (1) is a glycosphingolipid of formula (7), and wherein W of the glycosphingolipid of formula (7) is Gaipi-3GalNAcpi-4(Neu5Aca2-3)Gaipi- 4Glcpi-. Accordingly, in some preferred embodiments, the glycosphingolipid of formula (1) is a glycosphingolipid of formula (7), and wherein the glycosphingolipid of formula (7) is GMla.
  • Glycosphingolipids according to our invention may be produced by methods known to the skilled person.
  • a method for the synthesis of glycosphingolipids is, for example, described in
  • WO2023118378A1 or by Vaughan et al., J. Am. Chem. Soc. 2006, 128, 6300-6301wherein a glycosyl fluoride, such as for example lactosyl fluoride, is coupled to a sphingolipid using an endoglycoceramidase glycosynthases (EGCases) enzyme.
  • Glycosphingolipids carrying complex oligosaccharide moieties may be produced via biotechnological methods such as that described in WO 2021170620 (Al).
  • sialic acid donor refers to a compound carrying a sialic acid unit that can be transferred to a suitable acceptor, such as a glycosphingolipid.
  • Sialic acid donors suitable for use in the context of the present invention, are typically a-sialylated compounds which can derive from natural sources or can be chemically synthesized.
  • a-Sialylated compounds deriving from natural sources are for example 3'-sialyllactose, sialic acid rich protein, and colominic acid.
  • Chemically synthesized a-sialylated compounds include but are not limited to p-nitrophenyl /V-acetylneuraminic acid (Neu5AcapNP), methylumbelliferyl /V-acetylneuraminic acid (Neu5AcaMU) and derivatives thereof.
  • the sialic acid donor is 3'-sialyllactose.
  • an enzyme having a trans-sialidase activity may be interchangeably used with the term “trans-sialidase” and denotes, in the context of the present invention, an enzyme belonging to the glycoside hydrolase family 33 (GH33) which typically catalyses the reversible transfer of a glycosidically linked sialic acid from sialic acid donors such as for example oligosaccharides, glycoproteins, glycolipids, and colominic acid to acceptor molecules containing a terminal p-galactopyranosyl unit. In the absence of a suitable acceptor molecule, these enzymes may act as sialidases and transfer the glycosidically linked sialic acid to a water molecule. However, their hydrolytic activity is typically low.
  • the trans-sialidase in its wild-type form may originate from parasitic euglenoids, such as Trypanosoma cruzi, Trypanosoma congolense, or Trypanosome brucei.
  • the trans-sialidase in its wildtype form may originate from a microorganism having a vector, to which a gene encoding a wildtype trans-sialidase has been ligated, or introduced.
  • trans-sialidase in its wildtype form may originate from any known trans-sialidase sequence or from any trans-sialidase sequence which has yet to be determined.
  • Trans-sialidases yet to be determined can be identified using sequence databases and sequence alignment algorithms, for example, the publicly available GenBank database and the BLAST alignment algorithm.
  • the enzyme having a trans-sialidase activity is a wildtype trans sialidase originating from, Trypanosoma cruzi, Trypanosoma congolense, or Trypanosome brucei, or a functional analogue thereof.
  • the enzyme having trans-sialidase activity is a wild-type trans-sialidase originating from Trypanosoma cruzi.
  • the amino acid sequence of the wild-type trans-sialidase originating from Trypanosoma cruzi can be found on h ttps://www. uniprot. ora/, accession: Q26966.
  • TcTS The trans-sialidase originating from Trypanosoma cruzi may also be referred to as TcTS.
  • the enzyme having trans-sialidase activity is a mutant of the wild-type trans- sialidase originating from Trypanosoma cruzi (Q26966).
  • the mutant trans-sialidase has at least five mutations at amino acid positions selected from the group consisting of the following positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966): S263T, R477H, V485L, E559V, N59F, S496K, V497G, E521K, D594G, I598D and H600R.
  • the mutant trans-sialidase has mutations at the following amino acid positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966): S263T, R477H, V485L, E559V, N59F, S496K, V497G, E521K, D594G, I598D and H600R.
  • the mutant trans-sialidase has mutations at the following amino acid positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966): N59F, S496K, V497G, E521K, D594G, I598D and H600R, as described in Amaya et al., Structure 2004, 12, 775-784.
  • the mutant trans-sialidase has mutations at the following amino acid positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966): N59F, V497G, S496K, E521K, and E559V. In some embodiments, the mutant trans-sialidase has mutations at the following amino acid positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966: S263T, R477H, V485L, E559V, and S496K.
  • the mutant trans-sialidase has mutations at the following amino acid positions (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966): S496K, V497G, D594G, I598D, and H600R.
  • the mutant trans-sialidase further comprises the N-terminal deletion of amino acid Ml (numbering corresponding to alignment of the amino acid sequence with the amino acid sequence of Q26966), and the insertion of the N-terminal 14 amino acids histidine tag MGGSHHHHHGMAS.
  • the mutant trans-sialidase further comprises the C-terminal deletion of amino acids A636-642 (numbering corresponding to alignment of the amino acid sequence with amino the acid sequence Q26966).
  • the amino acids sequence of the mutant trans-sialidase corresponds to the amino acid sequence ID NO: 1MSO of the World Protein Data Bank (https://www.rcsb.org/structure/lMSO), wherein the reference amino acid sequence comprising the following mutations/modifications compared to the wild-type: S263T, R477H, V485L, E559V, N59F, S496K, V497G, E521K, D594G, I598D, H600R, /V- terminal His-tag, C-terminal deletion of 7 amino acids A636-642.
  • the amino acids sequence of the mutant trans-sialidase comprises or consists of an amino acid sequence of SEQ ID NO: 1, wherein the mutant comprising the following mutations/modifications compared to the wild-type amino acid sequence Q26966: S263T, R477H, V485L, E559V, S496K, /V-terminal His-tag, deletion of 7 amino acids A636-642.
  • the mutant trans-sialidase may be produced by methods known to the skilled person.
  • a method for the expression and purification of a mutant trans-sialidase is for example described in Paris et al., Glycobiology 2001, 11, 305-311, or in Buschiazzo et al., Molecular Cell 2002, 10, 757-768.
  • the method according to the present invention comprises the step of mixing the glycosphingolipid and the sialic acid donor in the presence of the enzyme having a trans-sialidase activity, thereby producing a sialylated glycosphingolipid.
  • Sialylated glycosphingolipid produced according to the method described above are typically represented by a sialylated glycosphingolipid of formula (2): wherein
  • Y is a glycosyl moiety carrying at least one sialic acid unit
  • R 1 , R 2 , R 3 , R 4 , and the bond - are as defined as for the glycosphingolipid of formula (1).
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 and R 4 are hydrogen, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a single bond.
  • R 1 is a C10-C17 1-hydroxyalkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond.
  • the sialylated glycosphingolipid of formula (2) is a glycosphingolipid selected from the group consisting of glycosphingolipids of formulas (11), (12), (13), and (14):
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a double bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 is hydrogen, R 4 is a substituted or unsubstituted C16-32 acyl, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a single bond.
  • R 1 is a C10-C17 1-hydroxyalkyl
  • R 2 , and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a double bond.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid selected from the group consisting of sialylated glycosphingolipids of formulas (15), (16), (17), and (18):
  • Y of the sialylated glycosphingolipid of formula (2), and of formulas (11)-(18) is a glycosyl moiety selected from the following glycosyl moieties, or salts thereof:
  • Y of the sialylated glycosphingolipid of formula (2), and of the sialylated glycosphingolipids of formulas (11)-(18) is a glycosyl moiety selected from the following glycosyl moieties, or salts thereof:
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein Y of the sialylated glycosphingolipid of formula (11) is Neu5Aca2-3Gaipi-. Accordingly, in some embodiments, the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein the sialylated glycosphingolipid of formula (11) is N-lyso- GM4.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein Y of the sialylated glycosphingolipid of formula (11) is Neu5Aca2-3Gaipi-4Glcpi-. Accordingly, in some preferred embodiments, the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein the sialylated glycosphingolipid of formula (11) is /V-lyso-GM3.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein Y of the sialylated glycosphingolipid of formula (11) is Neu5Aca2-3Gaipi- 3GalNAcpi-4(Neu5Aca2-3)Gaipi-4Glcpi-. Accordingly, in some embodiments the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (11), and wherein the sialylated glycosphingolipid of formula (11) is /V-lyso-GDla.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein Y of the sialylated glycosphingolipid of formula (15) is Neu5Aca2-3Gaipi-. Accordingly, in some embodiments the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein the sialylated glycosphingolipid of formula (15) is GM4.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein Y of the sialylated glycosphingolipid of formula (15) is Neu5Aca2-3Gaipi- 4Glcpi-. Accordingly, in some embodiments, the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein the sialylated glycosphingolipid of formula (15) is GM3.
  • the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein Y of the sialylated glycosphingolipid of formula (15) is Neu5Aca2-3Gaipi-3GalNAcpi-4(Neu5Aca2-3)Gaipi-4Glcpi-. Accordingly, in some preferred embodiments, the sialylated glycosphingolipid of formula (2) is a sialylated glycosphingolipid of formula (15), and wherein the sialylated glycosphingolipid of formula (15) is GDla.
  • the method further comprising a step of adding an enzyme having p- galactosidase activity.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • an enzyme having a p-galactosidase activity may be interchangeably used with the term “P- galactosidase” and denotes, in the context of the present invention, an enzyme belonging to the glycoside hydrolase family 35 (GH35) which typically catalyses the hydrolysis of terminal non-reducing p- D-galactose residues in p-D-galactosides.
  • GH35 glycoside hydrolase family 35
  • a p-galactosidase may also be referred to as lactase.
  • the p-galactosidase in its wild-type form may originate from microorganisms such as bacteria, yeasts, ascomycete, actinomycetes, hyphomycetes, basidiomycotina, and the like.
  • the p-galactosidase in its wild-type form may originate from Aspergillus oryzae.
  • the p-galactosidase in its wildtype form may originate from a microorganism having a vector, to which a gene encoding a wildtype p-galactosidase has been ligated, or introduced.
  • the p-galactosidase in its wildtype form may originate from any known p-galactosidase sequence or from any p-galactosidase sequence which has yet to be determined.
  • P-Galactosidase yet to be determined can be identified using sequence databases and sequence alignment algorithms, for example, the publicly available GenBank database and the BLAST alignment algorithm.
  • the enzyme having p-galactosidase activity is a wild-type p-galactosidase originating from Aspergillus orizyae, or a functional analogue thereof.
  • the amino acid sequence of the wild-type p-galactosidase originating from Aspergillus orizyae can be found on https://www.uniprot.org/, accession: Q2UCU3.
  • the enzyme having p-galactosidase activity is a truncated variant of the wild-type p-galactosidase originating from Aspergillus orizyae (Q2UCU3).
  • the truncated variant of the p-galactosidase can be purchased from established manufacturers, e.g. Calza Clemente, or produced by methods known to the skilled person such as that described in M.M. Maksimainen et al., International Journal of Biological Macromolecules 2013, 60, 109-115.
  • the step of adding an enzyme having a p-galactosidase activity may advantageously be used to hydrolyze the lactose formed during the sialyltransferase catalyzed sialylation of the glycosphingolipid of formula (1), or of formulas (3)-(10).
  • the trans-sialidase catalyzed sialylation may be a reversible process.
  • the sialic acid donor is 3'-sialyllactose
  • lactose is formed during the transfer and may act as an acceptor for the trans-sialidase leading to an equilibrium.
  • the lactose formed during the transfer can be hydrolyzed into galactose and glucose which typically do not act as acceptors for the trans-sialidase leading the reaction towards completion.
  • the enzyme having p-galactosidase activity is added after a certain conversion of 3'-sialyllactose is reached.
  • the step of adding the enzyme having a p-galactosidase activity is performed when a conversion of at least about 50% of 3'-sialyllactose is reached, preferably when a conversion of at least about 50%, 55%, 60%, 65%, 70%, 75%, 80%, or 85% of 3'-sialyllactose is reached.
  • the conversion of 3'-sialyllactose can be determined by standard techniques known to the skilled person. Typically, the conversion of 3'-sialyllactose is determined by HPLC and may be given in mol.% or wt.%.
  • the sialylated glycosphingolipid is produced in the presence of a cyclodextrin.
  • cyclodextrin provides several advantages such as high yields and eliminates the need for the use of a detergent or organic solvent to increase accessibility to the glycosyl moiety of the glycosphingolipid.
  • detergents or organic solvents can also be used in the method of the invention.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and a cyclodextrin
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, a cyclodextrin, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, a cyclodextrin, and an enzyme having p-galactosidase activity
  • cyclodextrin refers to a cyclic oligosaccharide consisting of a macrocyclic ring of monosaccharide subunits (e.g., glucose). Cyclodextrins typically contain 6-, 7- or 8-monosaccharide subunits and may be referred to as a-cyclodextrins, p-cyclodextrins, and y-cyclodextrins, respectively. The cyclodextrin may be modified such that some or all of the primary or secondary hydroxyl groups of the macrocycle, or both, may be alkylated or acylated.
  • the cyclodextrin is a-cyclodextrin, p-cyclodextrin, y-cyclodextrin, or derivatives thereof.
  • the cyclodextrin is selected from the group consisting of p-cyclodextrin, hydroxypropyl-p-cyclodextrin, randomly methylated p-cyclodextrin, or sulfobutylether-p-cyclodextrin. In some preferred embodiments, the cyclodextrin is p-cyclodextrin.
  • the cyclodextrin is typically used in an amount between about 0.1 equivalents to about 1 equivalent based on the amount of the glycosphingolipid. In some preferred embodiments the cyclodextrin is used in an amount between about 0.1 equivalents to about 0.5 equivalents based on the amount of the glycosphingolipid. Accordingly, in some preferred embodiments, the cyclodextrin is used in an amount of about 0.1, 0.2, 0.3, 0.4, or 0.5 equivalents based on the amount of the glycosphingolipid.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, wherein the method described herein further comprises a nanofiltration step. In some embodiments, the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, a cyclodextrin, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of: - providing a glycosphingolipid, a sialic acid donor, an enzyme having a trans-sialidase activity, an enzyme having p-galactosidase activity, and a cyclodextrin,
  • the nanofiltration (NF) step may be used to concentrate the mixture containing the sialylated glycosphingolipid, to remove ions, mainly monovalent ions, and/or to remove organic materials having a molecular weight lower than that of the sialylated glycosphingolipid, such as monosaccharides.
  • the nanofiltration step is used to remove galactose and glucose from the mixture containing the sialylated glycosphingolipid.
  • the nanofiltration membrane has a molecular weight cut-off (MWCO) that ensures the retention of the sialylated glycosphingolipid of interest.
  • MWCO molecular weight cut-off
  • a nanofiltration membrane having a MWCO of about 200-500 Da is suitable for retaining the sialylated glycosphingolipid.
  • the sialylated glycosphingolipid is accumulated in the NF retentate (NFR).
  • Nanofiltration can be combined with diafiltration (DF) with water in order to remove permeable molecules more effectively, e.g. until the conductivity of the permeate shows no or very low presence of salts.
  • DF diafiltration
  • the NF step according to the present invention is conducted, with or without the optional DF step, at a constant temperature, preferably between about 15-45 °C, more preferably between about 20-35 °C.
  • the NF step, with or without diafiltration, is continued until reaching the desired concentration of the sialylated glycosphingolipid in the NFR.
  • Other technical parameters like setting in the flux and pressure is a matter of routine skills.
  • the sialylation method according to the present invention comprises a step of mixing a glycosphingolipid with a sialic acid donor in the presence of an enzyme having trans-sialidase activity.
  • the sialylation method according to the present invention further comprises a step of adding a p-galactosidase to the mixture of the sialic acid donor, the glycosphingolipid, and the trans-sialidase.
  • the sialylation is performed in the presence of a cyclodextrin.
  • the enzyme(s), substrates and in some embodiments the cyclodextrin may be added in any order, and it is appreciated that the order of combining the reactants may be adjusted as needed.
  • the sialic acid donor may be added to a solution of the glycosphingolipid, followed by the addition of the trans-sialidase.
  • the sialic acid donor may be added to a solution of the glycosphingolipid, followed by the addition of the trans-sialidase and p-galactosidase.
  • the sialic acid donor, the glycosphingolipid, the trans-sialidase, and the p-galactosidase, as well as any other component used during the sialylation reaction may be added to the reaction mixture either as a solid or dissolved in a solvent, and in any quantities and manner effective for the intended result of the process.
  • the temperature at which the above process is carried out can range from just above freezing to the temperature at which the most sensitive enzyme denatures. That temperature range is preferably at about 0 °C to about 45 °C, and more preferably at about 20 °C to 37 °C.
  • glycosphingolipid and the sialic acid donor are reacted in the presence of the enzyme(s) and in some embodiments in the presence of a cyclodextrin , for a period of time sufficient to obtain the desired high yield of the desired sialylated glycosphingolipid.
  • reaction is allowed to proceed for between about 1 to about 24 hours, preferably between about 5 to about 10 hours. In some embodiments, reaction is allowed to proceed for about 5, 6, 7, 8, 9, or 10 hours.
  • the glycosphingolipid, the enzyme(s), and in some embodiments the cyclodextrin may be combined by admixture in an aqueous reaction medium.
  • the medium generally has a pH value of about 5 to about 7.5.
  • the selection of the medium is based on the ability of the medium to maintain the pH value at the desired level. Accordingly, in some embodiments the medium is buffered to a pH value of about 5.0, 5.1, 5.2, 5.3, 5.4, 5.5, 5.6, 5.7, 5.8, 5.9, 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7.0, 7.1, 7.2, 7.3, 7.4, 7.5.
  • the medium is buffered to a pH value of about 5.5 to 6.5. Accordingly, in some preferred embodiments, the medium is buffered to a pH value of about 5.5, 5.6, 5.7, 5.8, 5.9, 6.0, 6.1, 6.2, 6.3, 6.4, 6.5.
  • Suitable buffers include, but are not limited to, MES, Bis-Tris, ADA, ACES, PIPES, MOPSO, MOPS, HEPES, PBS, sodium acetate buffer, sodium citrate buffer. Preferably, sodium acetate buffer. If a buffer is not used, the pH of the medium should be maintained at about 5 to about 7.5 by the use of a base or an acid.
  • a suitable base is NaOH
  • a suitable acid is HCI.
  • the sialylated glycosphingolipid produced by the above processes can be used without purification.
  • the sialylated glycosphingolipid may be purified via an isolation step.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, wherein the method further comprises a step of isolating the sialylated glycosphingolipid from the rection mixture.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • sialic acid donor is 3'-sialyllactose
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • sialic acid donor is 3'-sialyllactose
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, a cyclodextrin, and an enzyme having p-galactosidase activity
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, a cyclodextrin, and an enzyme having p-galactosidase activity
  • the step of isolating the sialylated glycosphingolipid may be performed by standard methods known to the skilled person, such as for example extraction with organic solvents, chromatography and/or ion exchange chromatography.
  • a preferred method of isolation involves diafiltration (DF) of the reaction mixture, wherein the DF is used to remove ions, mainly monovalent ions, and/or to remove organic materials such as protein and organic molecules.
  • the diafiltration is performed using a membrane having a MWCO of about 100-300 kDa, preferably of about 200-300 kDa is utilized.
  • ganglioside GM1 can form micellar aggregates in aqueous solutions having molecular weights between about 250 kDa and 450 kDa, wherein the size of the micellar aggregate will depend on the length of the fatty acid chain in the constituent molecule (D.B. Gammak, Biochem J 1963, 88, 373). This property may render gangliosides, such as GM1 not permeable through ultrafiltration membranes having a MWCO higher than that of GM1.
  • micellar aggregation may surprisingly occur independently from the presence of a fatty acid chain in the molecule.
  • the DF step according to the method of the present invention, results in the removal of any contaminant present in the aqueous media which is permeable through the diafiltration membrane.
  • the DF step is conducted at a constant temperature, preferably between about 15-45 °C, more preferably between about 20-35 °C.
  • the DF step is continued until reaching the desired concentration of the sialylated glycosphingolipid in the DFR.
  • Other technical parameters like setting in the flux and pressure is a matter of routine skills.
  • the DF step may optionally be followed by a concentration step.
  • the method further comprising a step of concentrating the DFR wherein the step of concentrating the DFR.
  • the concentration of the DFR is typically performed using the same membrane used during the diafiltration step, and for a period of time required to reduce the volume of the DFR to the desired final volume.
  • the DFR enriched with the sialylated glycosphingolipid is spray dried or spray granulated in a subsequent step.
  • the DFR comprising the glycosphingolipid of formula (1) is spray dried.
  • the spray drying step is conducted with a fast-rotating disk or a nozzle which generates small particles.
  • the particles can then fall, under gravity, towards the bottom of a spray drying tower.
  • a fluid bed may be provided, which can use hot air to effect drying (suitably at around 80° C to around 95° C).
  • agglomeration can take place, and the particles can stick together.
  • the agglomerated (granular) particles are subjected to drying, for example on a belt drying bed or on a sub-fluidized bed.
  • powder can be fluidized in a gas flow.
  • a fluid is sprayed with water that wets the powder and enhances the agglomeration.
  • This combination of spray-drying in combination with a fluid bed after dryer is suited for the agglomeration of many different types of solutions.
  • Drying can occur under air or under an inert gas, such as nitrogen.
  • an inert gas such as nitrogen.
  • the temperature in the bed can be adjusted to pre-set values. These values can range widely, for example, from 35° to 120°C, such as 50 to 90°C, e. g. from 60 to 80°C.
  • the spray-drying of the DFR retentate will result in the production of a spray-dried powder comprising a sialylated glycosphingolipids.
  • the spray-dried powder obtained following the method of the present invention, will typically have a median particles diameter between about 15 pm and about 30 pm.
  • the Span of the particles will typically be less than about 3, preferably less than about 2.
  • the Span of the particle is a dimensionless parameter indicative of the uniformity of the particle size distribution and it is defined as: [D(0.9) - D(0.1)] / D(0.5), wherein D(0.9), D(0.1), and D(0.5) represent the cutoff size below which 10%, 50%, and 90% (by volume) of particles are distributed, respectively.
  • a low Span i.e., less than 3 is characteristic of a narrow particle size distribution, resulting in improved flow characteristics of the spray-dried powder.
  • the spray-dried powder obtained following the method of the present invention, will typically have a specific volume of less than about 4 mL/g, preferably less than about 3 ml/g.
  • Spray-dried powders with such low specific volumes are generally preferred as they have improved flow characteristics.
  • the spray-dried powder obtained following the method of the present invention, will typically have a glycosphingolipid content of at least about 65 wt.%, usually of at least about 70 wt.%, preferably of at least about 75 wt.%, more preferably of at least about 85 wt.%.
  • the spray-dried powder comprising at least about 70 wt.% of /V-lyso-GM3, or at least about 75 wt.% of /V-lyso-GM3, or at least about 80 wt.% of /V-lyso-GM3.
  • the spray-dried powder comprising about 75-80 wt.% of /V-lyso-GM3, and wherein the spray dried-powder further comprising about 7-9 wt.% of lactosyl D-erythro-sphingosine, and about 0.1-1.0 wt.% of glucosyl D-erythro-sphingosine.
  • the sialylated glycosphingolipid produced by the method described above can be utilized as acceptor substrate for a second enzymatic sialylation step.
  • the second enzymatic sialylation step is carried out as part of a sialyltransferase cycle, which comprises a CMP-sialic acid recycling system wherein several enzymes are utilized to generate/regenerate CMP-sialic acid from sialic acid and CMP.
  • CMP-sialic acid is a relatively expensive sugar nucleotide, therefore the in situ generation and regeneration of the sialic acid donor is of economic advantage and enables the scale up of the process.
  • the sialyltransferase cycle described in the present invention typically comprises sialic acid, cytidine monophosphate (CMP), a nucleoside triphosphate, and at least five enzymes, wherein the at least five enzymes comprise at least one enzyme having sialyltransferase activity, at least one enzyme having a N- acylneuraminate citydyltransferase activity, at least one enzyme having inorganic diphosphatase activity, and at least two enzymes having kinase activity.
  • CMP cytidine monophosphate
  • nucleoside triphosphate a nucleoside triphosphate
  • at least five enzymes comprise at least one enzyme having sialyltransferase activity, at least one enzyme having a N- acylneuraminate citydyltransferase activity, at least one enzyme having inorganic diphosphatase activity, and at least two enzymes having kinase activity.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of: providing a glycosphingolipid, a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity,
  • the at least five enzymes comprise at least one enzyme having sialyltransferase activity, at least one enzyme having a /V-acylneuraminate citydyltransferase activity, at least one enzyme having inorganic diphosphatase activity, and at least two enzymes having kinase activity.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • the at least five enzymes comprise at least one enzyme having sialyltransferase activity, at least one enzyme having a /V-acylneuraminate citydyltransferase activity, at least one enzyme having inorganic diphosphatase activity, and at least two enzymes having kinase activity.
  • sialic acid refers to any member of a family of nine-carbon carboxylated sugars.
  • the most common member of the sialic acid family is /V-acetyl-neuraminic acid (often abbreviated as Neu5Ac, NeuAc, or NANA).
  • a second member of the family is /V-glycolyl-neuraminic acid (Neu5Gc or NeuGc), in which the /V-acetyl group of Neu5Ac is hydroxylated.
  • a third sialic acid family member is 2-keto-3-deoxy- nonulosonic acid (KDN).
  • sialic acids such as a 9-O-Ci-Cg acyl-Neu5Ac like 9-O-lactyl-Neu5Ac or 9-O-acetyl-Neu5Ac, 9-deoxy-9-fluoro-Neu5Ac and 9-azido-9-deoxy-Neu5Ac.
  • sialic acid refers to /V-acetyl-neuraminic acid (Neu5Ac).
  • /V-Acetyl-neuraminic acid can be synthesized by methods known to skilled person such as for example the method described in US2011165626 (Al).
  • Nucleoside triphosphates suitable for use in the context of the present invention are adenosine-5'- triphosphate (ATP), uridine-5'-triphosphate (UTP), guanosine-5'-triphosphate (GTP), inosine triphosphate (ITP) and thymidine-5'-triphosphate (TTP).
  • a preferred nucleoside triphosphate is adenosine-5'-triphosphate (ATP).
  • the nucleoside triphosphate is adenosine 5'-triphosphate (ATP), and the at least five enzymes comprise the following enzyme:
  • the sialyltransferase cycle comprises /V-acetyl-neuraminic acid (Neu5Ac), cytidine monophosphate (CMP), adenosine 5'-triphosphate (ATP), an enzyme having cytidine monophosphate kinase activity (CMK) (for the phosphorylation of CMP), an enzyme having nucleoside diphosphate kinase activity (NDK) (for the phosphorylation of CDP), an enzyme having N- acylneuraminate cytidyltransferase activity (CSS) (for the transfer of CMP from CTP to Neu5Ac), an enzyme having sialyltransferase activity (for the transfer of Neu5Ac from CMP-Neu5Ac to the acceptor substrate), and an enzyme having inorganic diphosphatase activity (PPase) (to degrade the inorganic pyrophosphate (PPi) formed as by-product during the cycle
  • PPase
  • the sialyltransferase cycle further comprises the regeneration of ATP, wherein ATP is regenerated by using a source of phosphate and an enzyme having kinase activity.
  • Sources of phosphate that can be used for the regeneration of ATP include but are not limited to polyphosphate, phosphoenol pyruvate, and acetyl phosphate. The selection of a particular kinase for use in the regeneration of ATP depends upon the phosphate sourced employed.
  • ATP is regenerated by using polyphosphate as the source of phosphate and an enzyme having polyphosphatase kinase activity.
  • the sialyltransferase cycle comprises /V-acetyl-neuraminic acid (Neu5Ac), cytidine monophosphate (CMP), adenosine 5'-triphosphate (ATP), polyphosphate, an enzyme having cytidine monophosphate kinase activity (CMK) (for the phosphorylation of CMP), an enzyme having nucleoside diphosphate kinase activity (NDK) (for the phosphorylation of CDP), an enzyme having N-acylneuraminate cytidyltransferase activity (CSS) (for the transfer of CMP from CTP to Neu5Ac), an enzyme having sialyltransferase activity (for the transfer of Neu5Ac from CMP-Neu5Ac to the acceptor substrate), an enzyme having polyphosphate cycle, /V-
  • an enzyme having a sialyltransferase activity may be interchangeably used with the term “sialyltransferase” and denotes, in the context of the present invention, an enzyme belonging to the glycosyltransferase family 29 (GT29), or to the glycosyltransferase family 42 (GT42) which typically catalyzes the transfer of sialic acid from CMP-sialic acid to a saccharide acceptor.
  • Suitable sialyl transferases for use in the context of the present invention are sialyltransferases capable of catalyzing the addition of a sialic acid residue to the 0-8 of an a-2-3-linked sialic acid residue of a saccharide acceptor.
  • the sialyltransferase in its wild-type form, may originate from microorganisms such as bacteria, yeasts, ascomycete, actinomycetes, hyphomycetes, basidiomycotina, and the like, or mammals.
  • the sialyltransferase in its wild-type form may originate from Campilobacter jejuni.
  • the sialyltransferase in its wildtype form may originate from a microorganism having a vector, to which a gene encoding a wildtype sialyltransferase has been ligated, or introduced.
  • sialyltransferase in its wildtype form may originate from any known sialyltransferase sequence or from any sialyltransferase sequence which has yet to be determined.
  • Sialyltransferase yet to be determined can be identified using sequence databases and sequence alignment algorithms, for example, the publicly available GenBank database and the BLAST alignment algorithm.
  • the mutant a-2,3/a-2,8-sialyltransferase has the mutation I53G (the numbering corresponding to alignment of the mutant amino acid sequence with the amino acid sequence of Q9LAK3), as described in Gilbert et al., Biological Chemistry 2002, 277 , 327-337.
  • the mutant a-2,3/a-2,8-sialyltransferase is a mutant derived from the wild-type CST-II Q9LAK3, wherein the mutant comprising the following mutations/modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • the mutant a-2,3/a-2,8-sialyltransferase is a mutant derived from the wild-type CST-II Q9LAK3, wherein the mutant comprising the following mutations/modifications compared to the wild-type: I53G and /V-terminal histidine tag MGHHHHHH.
  • the a-2,3/a-2,8-sialyltransferase originating from Campylobacter jejuni may also be referred to as CST- II.
  • an enzyme having cytidine monophosphate kinase activity may be interchangeably used with the term “CMP kinase” or "CMK” and denotes, in the context of the present invention, an enzyme that catalyzes the phosphorylation of CMP (or dCMP), using ATP as the preferred phosphoryl donor.
  • the enzyme having cytidine monophosphate kinase activity is a wild-type CMP kinase originating from Mycobacterium tuberculosis, or a functional analogue thereof.
  • the amino acid sequence of the wild-type CMP kinase originating from Mycobacterium tuberculosis corresponds to the amino acid sequence having accession No: WP_129368399 (//www.ncbi. nlm.nih.gov/genbank/)
  • the enzyme CMP kinase activity is a recombinant CMP kinase derived from the wild-type CMP kinase originating from Mycobacterium tuberculosis, wherein the recombinant CMP kinase comprising the following modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • the CMP kinase originating from Mycobacterium tuberculosis may also be referred to as /WtCMK.
  • nucleoside diphosphate kinase activity may be interchangeably used with the term “nucleoside-diphosphate kinase” or "NDK” and denotes, in the context of the present invention, an enzyme that catalyzes the phosphorylation of a nucleoside diphosphate.
  • the enzyme having nucleoside diphosphate kinase activity is a wildtype nucleoside-diphosphate kinase originating from Mycobacterium tuberculosis complex, or a functional analogue thereof.
  • the amino acid sequence of the wild-type nucleoside-diphosphate kinase originating from Mycobacterium tuberculosis complex corresponds to amino acid sequence having accession No: WP_003412592 (https://www.ncbi.nlm.nih.gov/genbank).
  • the enzyme having NDK activity is a recombinant NDK derived from the wildtype NDK originating from Mycobacterium tuberculosis complex, wherein the recombinant NDK comprising the following modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • the nucleoside-diphosphate kinase originating from Mycobacterium tuberculosis complex may also be referred to as MtNDK.
  • an enzyme having /V-acylneuraminate cytidyltransferase activity may be interchangeably used with the term “/V-acylneuraminate cytidylyltransferase” or "CSS” and denotes, in the context of the present invention, an enzyme that catalyzes the transfer of CMP from CTP to /V-acetyl-neuraminic acid (Neu5Ac).
  • the enzyme having /V-acylneuraminate cytidyltransferase activity is a wild-type /V-acylneuraminate cytidylyltransferase originating from Neisseria meningitidis or a functional analogue thereof.
  • the amino acid sequence of the wild-type /V-acylneuraminate cytidylyltransferase originating from Neisseria meningitidis corresponds to the amino acid sequence having accession No: WP_061726245 (https://www.ncbi.nlm.nih.gov/genbank/)
  • the enzyme having CSS activity is a recombinant CSS derived from the wild-type CSS originating from Neisseria meningitidis, wherein the recombinant CSS comprising the following modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • NmCSS The /V-acylneuraminate cytidyltransferase originating from Neisseria meningitidis may also be referred to as NmCSS.
  • an enzyme having inorganic diphosphatase activity may be interchangeably used with the term “inorganic diphosphatase” or "PPase” and denotes, in the context of the present invention, an enzyme that catalyses the hydrolysis of pyrophosphate (Ppi).
  • the enzyme having inorganic diphosphatase activity is a wild-type inorganic diphosphatase originating from Escherichia coli, or a functional analogue thereof.
  • the amino acid sequence of the wild-type inorganic diphosphatase originating from Escherichia coli corresponds to the amino acid sequence having accession No: WP_073849715 (https://www.ncbi.nlm.nih.gov/genbank/).
  • the enzyme having PPase activity is a recombinant PPase derived from the wildtype PPase originating from Escherichia coli, wherein the recombinant PPase comprising the following modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • the inorganic diphosphatase originating from Escherichia coli may also be referred to as EcPPase.
  • the term "an enzyme having polyphosphate kinase activity” may be interchangeably used with the term “polyphosphate kinase” or "PPK” and denotes, in the context of the present invention, an enzyme that catalyses the phosphorylation of ADP.
  • the enzyme having polyphosphate kinase activity is a wild-type polyphosphate kinase originating from Meiothermus ruber strain DSM 1279, or a functional analogue thereof.
  • the amino acid sequence of the wild-type polyphosphate kinase originating from Meiothermus ruber strain DSM 1279 corresponds to the amino sequence having accession No: ADD29239 (https://www.ncbi.nlm.nih.gov/genbank/).
  • the enzyme having PPK activity is a recombinant PPK derived from the wild-type PPK originating from Meiothermus ruber strain DSM 1279, wherein the recombinant PPK comprising the modifications compared to the wild-type: /V-terminal histidine tag MGHHHHHH.
  • the polyphosphate kinase originating from Meiothermus ruber may also be referred to as MrPPK.
  • the mutated or recombinant variants and the wild-type enzymes used during the sialyltransferase cycle can be purchased from established manufacturers, or produced by methods known to the skilled person.
  • the mutant of the wild-type a-2,3/a-2,8-sialyltransferase originating from Campylobacter jejuni can be produced by the method described in Gilbert et al., Biological Chemistry 2002, 277, 327-337.
  • the wild-type enzymes can be produced by the method described in the examples below.
  • the concentrations or amounts of the various reactants used in the processes depend upon numerous factors including reaction conditions such as temperature and pH value, and the choice and amount of acceptor saccharides to be sialylated. Because the sialylation process permits regeneration of activating nucleotides, activated donor sugars and scavenging of produced PPi in the presence of catalytic amounts of the enzymes, the process is limited by the concentrations or amounts of the stoichiometric substances. The upper limit for the concentrations of reactants that can be used in accordance with the method of the present invention is determined by the solubility of such reactants. Preferably, the concentrations of activating nucleotides, phosphate donor, the donor sugar and enzymes are selected such that glycosylation proceeds until the acceptor is consumed.
  • the second enzymatic sialylation step can also include other ingredients that facilitate sialyltransferase activity. These ingredients can include a divalent cation (e.g., Mg +2 or Mn +2 ), materials necessary for ATP regeneration, phosphate ions etc.
  • the reaction medium may also comprise solubilizing detergents (e.g., Triton or SDS) and organic solvents such as methanol or ethanol, or a cyclodextrin.
  • the reaction medium comprises a cyclodextrin.
  • the cyclodextrin is selected from the group consisting of p-cyclodextrin, hydroxypropyl-p-cyclodextrin, randomly methylated p-cyclodextrin, or sulfobutylether-p-cyclodextrin.
  • the cyclodextrin is p-cyclodextrin.
  • the cyclodextrin is typically used in an amount between about 0.1 equivalents to about 1 equivalent based on the amount of the glycosphingolipid acceptor. In some preferred embodiments the cyclodextrin is used in an amount between about 0.1 equivalents to about 0.5 equivalents based on the amount of the glycosphingolipid acceptor. Accordingly, in some preferred embodiments, the cyclodextrin is used in an amount of about 0.1, 0.2, 0.3, 0.4, or 0.5 equivalents based on the amount of the glycosphingolipid acceptor.
  • cyclodextrin provides several advantages such as high yields and eliminates the need for the use of a detergent or organic solvent to increase accessibility to the glycosyl moiety of the glycosphingolipid.
  • detergents or organic solvents can also be used in the method of the invention.
  • the above ingredients can be combined by admixture in an aqueous reaction medium (solution) which has a pH value of about 6 to about 8.5.
  • the medium is devoid of chelators that bind enzyme cofactors such as Mg +2 or Mn +2 .
  • the selection of a medium is based on the ability of the medium to maintain pH value at the desired level.
  • the medium is buffered to a pH value at about 6.5 to about 8.5. If a buffer is not used, the pH of the medium should be maintained at about 6.5 to 8.0, preferably about 7.3 to 8.0, by the addition of base.
  • a suitable base is NaOH. Accordingly, in some preferred embodiments the pH is buffered or kept at a value of about 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0
  • the temperature at which the above process is carried out can range from just above freezing to the temperature at which the most sensitive enzyme denaturates. That temperature range is preferably at about 0 °C to about 45 °C, and more preferably at about 20 °C to 37 °C.
  • reaction mixture so formed is maintained for a period of time sufficient for the sialyltransferase to sialylate a high percentage of the acceptors.
  • the reaction will often be allowed to proceed for about 8 to about 240 hours, preferably between about 24 and 48 hours.
  • the /V-acetyl-neuraminic acid (Neu5Ac), the cytidine monophosphate (CMP), the adenosine 5'- triphosphate (ATP), polyphosphate, all enzymes required for the sialyltransferase cycle, as well as any other component used during the cycle may be added to the reaction mixture either as a solid or dissolved in a solvent, and in any quantities and manner effective for the intended result of the process.
  • all enzymes' amounts, or concentrations are expressed in activity Units, which is a measure of the initial rate of catalysis.
  • One activity Unit catalyses the formation of 1 pmol of product per minute at a given pH and temperature.
  • the enzymes can be utilized free in solution or can be bound to a support such as a polymer.
  • the enzymes may be provided as purified proteins, as cell-free extract, or as lysate.
  • the enzymes are provided as purified proteins, with a purity of about 50% to about 95%.
  • the enzymes are provided as cell-free extract, wherein the cell-free extract contains from about 5 wt% to about 70 wt% of the enzyme.
  • the cell-free extract contains from about 20 wt% to about 70 wt% of the enzyme.
  • the enzymes are usually present in a catalytic amount.
  • the catalytic amount of a particular enzyme varies according to the concentration of that enzyme's substrate as well as to the reaction conditions such as temperature, time, and pH value. Means for determining the catalytic amount for a given enzyme under preselected substrate concentrations and reaction conditions are well known to those skilled in the art.
  • sialylated glycosphingolipid such as a sialylated glycosphingolipid of formula (2) or of formula (11)-(18)
  • X is a glycosyl moiety carrying at least two sialic acid units
  • R 1 , R 2 , R 3 , R 4 , and the bond - are as defined as for the glycosphingolipid of formula (1).
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 and R 4 are hydrogen, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a single bond.
  • R 1 is a C10-C17 1-hydroxyalkyl
  • R 2 , R 3 and R 4 are hydrogen
  • the bond - is a double bond.
  • the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid selected from the group consisting of sialylated glycosphingolipids of formulas (20), (21), (22), and (23):
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a double bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 is OR 5 , wherein R 5 is hydrogen, R 3 is hydrogen, R 4 is a substituted or unsubstituted C16-32 acyl, and the bond - is a single bond.
  • R 1 is a saturated unsubstituted C10-C17 alkyl
  • R 2 , and R 3 are hydrogen
  • R 4 is a substituted or unsubstituted C16-32 acyl
  • the bond - is a single bond.
  • the sialylated glycosphingolipid of formula (19) is a C10-C17 1-hydroxyalkyl, R 2 , and R 3 are hydrogen, R 4 is a substituted or unsubstituted C16-32 acyl, and the bond - is a double bond.
  • the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid selected from the group consisting of sialylated glycosphingolipids of formulas (24), (25), (26), and (27):
  • X of the sialylated glycosphingolipid of formula (19), and of formulas (20)-(27) is a glycosyl moiety selected from the following glycosyl moieties, or salts thereof:
  • X of the sialylated glycosphingolipid of formula (19), and of the sialylated glycosphingolipids of formulas (20)-(27) is Neu5Aca2-8Neu5Aca2-3Gaipi-4Glcpi-.
  • the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid of formula (20), and wherein X of the sialylated glycosphingolipid of formula (20) is Neu5Aca2- 8Neu5Aca2-3Gaipi-4Glcpi-. Accordingly, in some embodiments, the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid of formula (20), and wherein the sialylated glycosphingolipid of formula (20) is /V-lyso-GD3.
  • the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid of formula (24), and wherein X of the sialylated glycosphingolipid of formula (24) is Neu5Aca2- 8Neu5Aca2-3Gaipi-4Glcpi-. Accordingly, in some embodiments, the sialylated glycosphingolipid of formula (19) is a sialylated glycosphingolipid of formula (24), and wherein the sialylated glycosphingolipid of formula (24) is GD3.
  • the sialylated glycosphingolipid obtained after the second enzymatic sia lylation step may be isolated from the reaction mixture.
  • the isolation may be performed by standard methods known to the skilled person, such as for example extraction with organic solvents, chromatography and/or ion exchange chromatography.
  • the present invention describes a method for the production of a sialylated glycosphingolipid, the method comprising the steps of:
  • glycosphingolipid a sialic acid donor, an enzyme having a trans-sialidase activity, and an enzyme having p-galactosidase activity
  • the at least five enzymes comprise at least one enzyme having sialyltransferase activity, at least one enzyme having a /V-acylneuraminate citydyltransferase activity, at least one enzyme having inorganic diphosphatase activity, and at least two enzymes having kinase activity, and
  • a preferred method of isolation involves diafiltration (DF) of the reaction mixture, wherein the DF is performed as described in the embodiments above.
  • the isolation step is followed by a step of spray-drying or spray-granulating the sialylated glycosphingolipid, wherein the spray-drying or spray-granulating is performed as described in the embodiments above.
  • the glycosphingolipids or sialylated glycosphingolipids according to the present invention may be produced or utilized in the form of salts, preferably in the form of pharmaceutical acceptable salts.
  • the salts may be formed from the following acids: hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, polyphosphoric acid, acetic acid, camphor sulfonic acid, p-toluene sulfonic acid, methane sulfonic acid, trifluoromethanesulfonic acid, perchloric acid.
  • Mutant TcTS was expressed from E. coli strains following methods described in Paris et al., Glycobiology 2001, 11, 305-311, or in Buschiazzo et al., Molecular Cell 2002, 10, 757-768, or following the general method described in Example 11.
  • Mutant CST-II wild-type Q9LAK3, mutations/modifications: I53G and /V-terminal histidine tag MGHHHHHH was expressed from E. coli strains following methods described in Gilbert et al., Biological Chemistry 2002, 277, 327-337, or by following the general method described in Example 11.
  • Recombinant MtCMK wild-type: WP_129368399, modification: N-terminal histidine tag MGHHHHHH
  • recombinant MtNDK wild-type: WP_003412592, modification: N-terminal histidine tag MGHHHHHH
  • recombinant MrPPK wild-type: ADD29239, modification: N-terminal histidine tag MGHHHHHH
  • recombinant NmCSS wild-type: WP_061726245, modification: N-terminal histidine tag MGHHHHHH
  • EcPPase wild-type: WP_073849715, modification: N-terminal histidine tag MGHHHHHH
  • the 2,3-trans-sialidase catalyzed sialylation reaction was performed in an aqueous solution at a pH between about 6.5 to about 7.0.
  • a typical reaction mixture contained the glycosphingolipid acceptor (1 eq.), 3'-sialyllactose (1.5-2.0 eq.), the 2,3-transialidase (TcTS, 0.4 g/L) and the p-galactosidase (0.5 g/L).
  • TcTS 2,3-transialidase
  • TcTS 2,3-transialidase
  • p-galactosidase 0.5 g/L
  • the nanofiltration of the reaction mixture was performed applying 300-500 Da membranes, a pressure of 15-20 bar and a temperature of about 30-40 °C for about 6-8 hours.
  • the NF retentate (NFR) was heated at a temperature between about 60-95 °C for about 10-60 minutes, and then diafiltered as described in Example 7.
  • Example 2 Production of a-N-acetylneuraminosyl-(2->3)-O-p-D-galactopyranosyl-(l->4)-p-D- glucopyranosyl-(l->l')-D-erythro-sphingosine (/V-lyso-GM3) /V-lyso-GM3 was produced using lactosylsphingosine as the glycosphingolipid acceptor following the general procedure described in Example 1.
  • Example 3 Production of a-/V-acetylneuraminosyl-(2->3)-O-P-D-galactopyranosyl-(l->3)-O-2- (acetylamino)-2-deoxy-p-D-galactopyranosyl-(l->4)-O-[a-/V-acetylneuraminosyl-(2->3)]-O-p-D- galactopyranosyl-(l->4)- -D-glucopyranosyl-(l->l')-D-erythro-sphingosine (N-lyso-GDla)
  • N-lyso-GDla was produced using /V-lyso-GMla as the glycosphingolipid acceptor following the general procedure described in example 1.
  • Example 4 Production of a-/V-acetylneuraminosyl-(2->3)-O-P-D-galactopyranosyl-(l->3)-O-2- (acetylamino)-2-deoxy-p-D-galactopyranosyl-(l->4)-O-[a-/V-acetylneuraminosyl-(2->3)]-O-p-D- galactopyranosyl-(l->4)-p-D-glucopyranosyl-(l->l')-N-stearoyl-D-erythro-sphingosine (GDla)
  • GDla was produced using GMla as the glycosphingolipid acceptor following the general procedure described in Example 1.
  • the sialyltransferase cycle was performed in an aqueous solution at a pH between about 6.5 to about 7.5, and a temperature of about 37 °C.
  • a typical reaction mixture contained the sialylated glycosphingolipid acceptor (1 eq.), N-acetylneuraminic acid (Neu5Ac, 2.5 eq.), p-cyclodextrin (0.5 eq.), ATP (3.5 eq.), CMP (0.27 eq.), MgCL (20 mM), and the following enzymes: mutant CST-II (5g/L), recombinant MtCMK, (12g/L), recombinant MtNDK (6g/L), recombinant NmCSS (lg/L), recombinant EcPPase (2.5 pL/mL).
  • the sialylation cycle was monitored by LCMS (for methods and condition see ExamplelO).
  • the sialyltransferase cycle was performed in an aqueous solution at a pH between about 7.0 to about 8.0, and a temperature of about 37 °C.
  • a typical reaction mixture contained the sialylated glycosphingolipid acceptor (1 eq.), N-acetylneuraminic acid (Neu5Ac, 1.5 eq.), p-cyclodextrin (0.5 eq.), ATP (between about 0.1 eq.
  • Example 6 Production of a-N-acetylneuraminosyl-(2->8)-O-a-N-acetylneuraminosyl-(2->3)-O-p-D- galactopyranosyl-(l->4)-p-D-glucopyranosyl-(l->l')-D-erythro-sphingosine (/V-lyso-GD3)
  • N-lyso-GD3 was produced using N-lyso-GM3 as the sialylated glycosphingolipid acceptor following the general procedure described in example 5.
  • Sialylated glycosphingolipids produced as described in Examples 1-6 were isolated from the reaction mixture via diafiltration (DF).
  • the DF was performed by applying 250 kDa spiral-wound membranes having a membrane area of about 0.668 m 2 , a flow rate of about 10 l/h, a transmembrane pressure of about 8-10 bar, a temperature between about 20-25 °C, and around 2-10 DF volumes relative to the volume of the feed solution.
  • a high flux of about 15.3-18.1 l/m 2 h was maintained.
  • the DF retentate (DFR) containing the sialylated glycosphingolipid, was spray-dried on a Mobile Minor ® (GEA) spray drier under the following conditions:
  • Atomizer speed 20,000 rpm
  • Example 8 Particle size analysis and water content of the spray-dried powder
  • the mean particle diameter, as well as the D(0.1), D(0.5), and D(0.9) values were measured by laser diffraction particle size analysis using a Malvern Mastersizer 3000 (Malvern Instruments).
  • the spray- dried powder obtained in Example 7 was dispersed in cyclohexane including 0.1 % soy lecithin. The samples were sonicated before size measurement to disperse the aggregated particles.
  • the water content of the spray-dried powder obtained in Example 2 was determined by thermogravimetry (TG) and differential scanning calorimetry (DSC), or via Karl Fisher titration. TG and DSC measurements were performed on a Setaram LabsysEvo (Setaram).
  • the spray-dried powder typically contains between about 2-3 wt.% of water.
  • Example 9 Spray-dried powder comprising /V-lyso-GM3
  • a DFR comprising /V-lyso-GM3, obtained following the procedure of Example 7 was spray-dried under the condition of Example 8 to afford a spray-dried powder having the following characteristics:
  • glycosphingolipid content of spray-dried powders comprising /V-lyso-GM3 was determined under the following conditions:
  • HPLC eluent profile solvent A: 1 L water + 0.5 mL formic acid + 4 mmol ammonium formate, and solvent B: 1 L MeOH + 1 L acetonitrile + 4 mL formic acid + 4 mmol ammonium formate.
  • a gradient of 50-100% B in A was applied over 13 min, followed by an isocratic of 100% B for 18 min, followed by an isocratic of 50% B in A for 40 min.
  • the glycosphingolipid content of the powder was quantified via peak area analysis using external standards.
  • Genes encoding the enzymes are usually ordered as codon-optimized synthetic genes for optimal expression in E. coli.
  • the synthetic constructs contain overhangs with Bsal restriction sites for golden gate cloning into a pET28a-based expression vector (carrying introduced Bsal restriction sites and a fluorescent drop-out cassette).
  • the gene is expressed under a lactose-inducible T7 promoter.
  • SEQ ID NO: 3 MGHHHHHH

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)

Abstract

La présente invention concerne un procédé de production d'un glycosphingolipide sialylé, le procédé comprenant les étapes consistant à : fournir un glycosphingolipide, un donneur d'acide sialique, et une enzyme présentant une activité trans-sialidase, à mélanger ledit glycosphingolipide avec ledit donneur d'acide sialique en présence de ladite enzyme présentant une activité trans-sialidase, ce qui permet de produire ledit glycosphingolipide sialylé ; le donneur d'acide sialique étant le 3´-sialyllactose.
PCT/IB2024/057597 2023-08-07 2024-08-06 Sialylation de glycosphingolipides Pending WO2025032496A1 (fr)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202480050748.4A CN121620596A (zh) 2023-08-07 2024-08-06 糖鞘脂的唾液酸化

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
PT118855 2023-08-07
PT11885523 2023-08-07
PT118901 2023-09-04
PT11890123 2023-09-04

Publications (1)

Publication Number Publication Date
WO2025032496A1 true WO2025032496A1 (fr) 2025-02-13

Family

ID=92712553

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IB2024/057597 Pending WO2025032496A1 (fr) 2023-08-07 2024-08-06 Sialylation de glycosphingolipides

Country Status (2)

Country Link
CN (1) CN121620596A (fr)
WO (1) WO2025032496A1 (fr)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN121022791A (zh) * 2025-10-28 2025-11-28 天津中合基因科技有限公司 一种天然核苷酸的制备方法及应用

Citations (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5278299A (en) * 1991-03-18 1994-01-11 Scripps Clinic And Research Foundation Method and composition for synthesizing sialylated glycosyl compounds
WO1994025614A1 (fr) * 1993-05-04 1994-11-10 The Scripps Research Institute Synthese d'oligosaccharides en cuve unique, au moyen d'enzymes multiples et d'un systeme de regeneration d'acide cmp-sialique
US5532141A (en) 1995-06-13 1996-07-02 Holler; Larry D. Process for obtaining ganglioside lipids
US5728554A (en) * 1995-04-11 1998-03-17 Cytel Corporation Enzymatic synthesis of glycosidic linkages
WO1999028491A1 (fr) 1997-12-01 1999-06-10 Cytel Corporation Synthese enzymatique de gangliosides
US5922577A (en) * 1995-04-11 1999-07-13 Cytel Corporation Enzymatic synthesis of glycosidic linkages
WO2003016469A2 (fr) * 2001-08-17 2003-02-27 Neose Technologies, Inc. Synthese chimio-enzymatique d'oligosaccharides sialyles
US20110165626A1 (en) 2006-10-03 2011-07-07 Centre National De La Recherche Scientifique (Cnrs High yield production of sialic acid (neu5ac) by fermentation
EP3095451A1 (fr) 2015-05-22 2016-11-23 Bioiberica, S.A. Procédé de préparation d'un extrait de cerveau d'origine animale
WO2021170620A1 (fr) 2020-02-24 2021-09-02 Carbocode S.A. Synthèse de fluorures de glycosyle
WO2023118378A1 (fr) 2021-12-21 2023-06-29 Carbocode S.A. Nouvelle glycosynthase

Patent Citations (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5278299A (en) * 1991-03-18 1994-01-11 Scripps Clinic And Research Foundation Method and composition for synthesizing sialylated glycosyl compounds
WO1994025614A1 (fr) * 1993-05-04 1994-11-10 The Scripps Research Institute Synthese d'oligosaccharides en cuve unique, au moyen d'enzymes multiples et d'un systeme de regeneration d'acide cmp-sialique
US5728554A (en) * 1995-04-11 1998-03-17 Cytel Corporation Enzymatic synthesis of glycosidic linkages
US5922577A (en) * 1995-04-11 1999-07-13 Cytel Corporation Enzymatic synthesis of glycosidic linkages
US5532141A (en) 1995-06-13 1996-07-02 Holler; Larry D. Process for obtaining ganglioside lipids
WO1999028491A1 (fr) 1997-12-01 1999-06-10 Cytel Corporation Synthese enzymatique de gangliosides
WO2003016469A2 (fr) * 2001-08-17 2003-02-27 Neose Technologies, Inc. Synthese chimio-enzymatique d'oligosaccharides sialyles
US20110165626A1 (en) 2006-10-03 2011-07-07 Centre National De La Recherche Scientifique (Cnrs High yield production of sialic acid (neu5ac) by fermentation
EP3095451A1 (fr) 2015-05-22 2016-11-23 Bioiberica, S.A. Procédé de préparation d'un extrait de cerveau d'origine animale
WO2021170620A1 (fr) 2020-02-24 2021-09-02 Carbocode S.A. Synthèse de fluorures de glycosyle
WO2023118378A1 (fr) 2021-12-21 2023-06-29 Carbocode S.A. Nouvelle glycosynthase

Non-Patent Citations (13)

* Cited by examiner, † Cited by third party
Title
AMAYA ET AL., STRUCTURE, vol. 12, 2004, pages 775 - 784
BUSCHIAZZO ET AL., MOLECULAR CELL, vol. 10, 2002, pages 757 - 768
D.B. GAMMAK, BIOCHEM J, vol. 88, 1963, pages 373
GILBERT ET AL., BIOLOGICAL CHEMISTRY, vol. 277, 2002, pages 327 - 337
IMBROGNO A. ET AL: "Molecular weight cut off (MWCO) determination in ultra- and nanofiltration: Review of methods and implications on organic matter removal", SEPARATION AND PURIFICATION TECHNOLOGY, vol. 354, 3 July 2024 (2024-07-03), NL, pages 128612, XP093227879, ISSN: 1383-5866, DOI: 10.1016/j.seppur.2024.128612 *
J. A. MORALES-SERNA, CARBOHYDR. RES., 2007
M.M. MAKSIMAINEN ET AL., INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, vol. 60, 2013, pages 109 - 115
MASUKAWA ET AL., JOURNAL OF LIPID RESEARCH, vol. 49, 2008, pages 1466 - 1476
MOTTA ET AL., BIOCHIM BIOPHYS ACTA, vol. 1182, 1993, pages 147 - 151
PARIS ET AL., GLYCOBIOLOGY, vol. 11, 2001, pages 305 - 311
RABIONET, BIOCHIM BIOPHYS ACTA, vol. 1841, 2014, pages 422 - 434
VAUGHAN ET AL., J. AM. CHEM. SOC., vol. 128, 2006, pages 6300 - 6301
YU H. ET AL., ORG BIOMOL CHEM., vol. 16, 2018, pages 4076 - 4080

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN121022791A (zh) * 2025-10-28 2025-11-28 天津中合基因科技有限公司 一种天然核苷酸的制备方法及应用

Also Published As

Publication number Publication date
CN121620596A (zh) 2026-03-06

Similar Documents

Publication Publication Date Title
AU744303B2 (en) Enzymatic synthesis of gangliosides
CA2218246C (fr) Synthese enzymatique de liaisons glycosidiques
AU2011278239B2 (en) Synthesis of new sialooligosaccharide derivatives
CN103562214B9 (zh) 人乳寡糖(hmo)或其前体的多样化
Schwörer et al. Efficient sialyltransferase inhibitors based on glycosides of N-acetylglucosamine
US20250354131A1 (en) Novel glycosynthase
Sabesan et al. Synthesis, enzymic, and NMR studies of novel sialoside probes: unprecedented, selective neuraminidase hydrolysis of and inhibition by C-6-(methyl)-Gal sialosides
EP1603932B1 (fr) Procedes et compositions pour la synthese enzymatique de gangliosides
US5952203A (en) Oligosaccharide synthesis using activated glycoside derivative, glycosyl transferase and catalytic amount of nucleotide phosphate
WO2025032496A1 (fr) Sialylation de glycosphingolipides
EP2984096B1 (fr) Synthese d'oligosaccharides de lait humain sialylés et éventuellement fucosylés
Nikrad et al. Use of human-milk fucosyltransferase in the chemoenzymic synthesis of analogues of the sialyl Lewis and sialyl Lewis tetrasaccharides modified at the C-2 position of the reducing unit
Norberg et al. Reversible derivatization of sugars with carbobenzyloxy groups and use of the derivatives in solution-phase enzymatic oligosaccharide synthesis
KR20260057070A (ko) 글리코스핑고지질의 시알릴화
Makimura et al. Regioselective α (2→ 3)-sialylation of Lex and Lea by sialidase-catalyzed transglycosylation
WO2025032499A2 (fr) Procédé d'isolement de glycosphingolipides
WO2025032497A1 (fr) Procédé de sialylation
KR20260054695A (ko) 시알릴화 방법
Shoda Enzymatic glycosylation
KR20260056176A (ko) 글리코스핑고지질의 단리 방법
EP1034294B1 (fr) Synthese enzymatique de gangliosides
Ogata et al. Molecular design of fluorescent labeled glycosides as acceptor substrates for sialyltransferases
WO2014201462A1 (fr) Synthèse automatisée de glucides
US20240409571A1 (en) Chemoenzymatic synthesis of n-acetylated gangliosides and glycosphingosines
WO2025133966A1 (fr) Production de glucosylcéramide

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 24768674

Country of ref document: EP

Kind code of ref document: A1

WWE Wipo information: entry into national phase

Ref document number: 2601000082

Country of ref document: TH

WWE Wipo information: entry into national phase

Ref document number: MX/A/2026/001484

Country of ref document: MX

REG Reference to national code

Ref country code: BR

Ref legal event code: B01A

Ref document number: 112026002766

Country of ref document: BR

WWE Wipo information: entry into national phase

Ref document number: 1020267007059

Country of ref document: KR

WWE Wipo information: entry into national phase

Ref document number: 2024768674

Country of ref document: EP

NENP Non-entry into the national phase

Ref country code: DE