ATE287453T1 - Automatisches verfahen zum identifizieren von ähnlichen biomolekularen sequenzen - Google Patents

Automatisches verfahen zum identifizieren von ähnlichen biomolekularen sequenzen

Info

Publication number
ATE287453T1
ATE287453T1 AT00973154T AT00973154T ATE287453T1 AT E287453 T1 ATE287453 T1 AT E287453T1 AT 00973154 T AT00973154 T AT 00973154T AT 00973154 T AT00973154 T AT 00973154T AT E287453 T1 ATE287453 T1 AT E287453T1
Authority
AT
Austria
Prior art keywords
family members
sequences
similarity values
databases
organism
Prior art date
Application number
AT00973154T
Other languages
English (en)
Inventor
Van Huijsduijnen Rob Hooft
Jacques Colinge
Original Assignee
Applied Research Systems
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Applied Research Systems filed Critical Applied Research Systems
Application granted granted Critical
Publication of ATE287453T1 publication Critical patent/ATE287453T1/de

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
AT00973154T 1999-11-25 2000-11-16 Automatisches verfahen zum identifizieren von ähnlichen biomolekularen sequenzen ATE287453T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP99811086A EP1103911A1 (de) 1999-11-25 1999-11-25 Automatisches Verfahen zum Identifizieren von ähnlichen biomolekularen Sequenzen
PCT/IB2000/001676 WO2001038568A2 (en) 1999-11-25 2000-11-16 Automated method for identifying related biomolecular sequences

Publications (1)

Publication Number Publication Date
ATE287453T1 true ATE287453T1 (de) 2005-02-15

Family

ID=8243161

Family Applications (1)

Application Number Title Priority Date Filing Date
AT00973154T ATE287453T1 (de) 1999-11-25 2000-11-16 Automatisches verfahen zum identifizieren von ähnlichen biomolekularen sequenzen

Country Status (13)

Country Link
US (1) US6996474B1 (de)
EP (2) EP1103911A1 (de)
JP (1) JP2003515148A (de)
AT (1) ATE287453T1 (de)
AU (1) AU782633B2 (de)
CA (1) CA2386706C (de)
DE (1) DE60017586T2 (de)
DK (1) DK1232282T3 (de)
ES (1) ES2234687T3 (de)
IL (2) IL149767A0 (de)
PT (1) PT1232282E (de)
SI (1) SI1232282T1 (de)
WO (1) WO2001038568A2 (de)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1504419B1 (de) 2002-03-22 2011-05-04 Phenomenome Discoveries Inc. Verfahren zur visualisierung von nicht gezielten metabolomischen daten, erzeugt durch ionenzyklotronresonanz -fouriertransformation-massenspektrometer
EP1540559B1 (de) * 2002-09-13 2013-02-27 The Texas A & M University System Bioinformatisches verfahren zum identifizieren von oberflächenverankerten proteinen aus gram-positiven bakterien und dadurch erhaltene proteine
AU2011203297B8 (en) * 2004-07-02 2013-07-11 The Government Of The United States Of America, As Represented By The Secretary Of The Navy Computer-Implemented Biological Sequence Identifier System and Method
US20060210967A1 (en) * 2004-07-02 2006-09-21 Agan Brian K Re-sequencing pathogen microarray
US20080250016A1 (en) * 2007-04-04 2008-10-09 Michael Steven Farrar Optimized smith-waterman search
WO2011137368A2 (en) 2010-04-30 2011-11-03 Life Technologies Corporation Systems and methods for analyzing nucleic acid sequences
US9268903B2 (en) 2010-07-06 2016-02-23 Life Technologies Corporation Systems and methods for sequence data alignment quality assessment
KR101809046B1 (ko) 2016-03-18 2017-12-14 고려대학교 산학협력단 이종상동유전자 발현 반응을 분석하기 위한 데이터의 재구성 방법 및 장치

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB2283840B (en) 1993-11-12 1998-07-22 Fujitsu Ltd Genetic motif extracting method and apparatus
US5701256A (en) 1995-05-31 1997-12-23 Cold Spring Harbor Laboratory Method and apparatus for biological sequence comparison
US5843732A (en) * 1995-06-06 1998-12-01 Nexstar Pharmaceuticals, Inc. Method and apparatus for determining consensus secondary structures for nucleic acid sequences
US5873052A (en) 1996-11-06 1999-02-16 The Perkin-Elmer Corporation Alignment-based similarity scoring methods for quantifying the differences between related biopolymer sequences

Also Published As

Publication number Publication date
EP1232282A2 (de) 2002-08-21
AU1169701A (en) 2001-06-04
PT1232282E (pt) 2005-05-31
JP2003515148A (ja) 2003-04-22
EP1232282B8 (de) 2006-01-18
WO2001038568A3 (en) 2001-12-20
DE60017586T2 (de) 2005-12-22
US6996474B1 (en) 2006-02-07
IL149767A (en) 2008-11-03
AU782633B2 (en) 2005-08-18
EP1232282B1 (de) 2005-01-19
IL149767A0 (en) 2002-11-10
ES2234687T3 (es) 2005-07-01
CA2386706A1 (en) 2001-05-31
CA2386706C (en) 2008-08-05
SI1232282T1 (en) 2005-06-30
WO2001038568A2 (en) 2001-05-31
EP1103911A1 (de) 2001-05-30
DE60017586D1 (de) 2005-02-24
DK1232282T3 (da) 2005-05-23

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