ATE403757T1 - Nukleinsäureanalyse - Google Patents

Nukleinsäureanalyse

Info

Publication number
ATE403757T1
ATE403757T1 AT05854599T AT05854599T ATE403757T1 AT E403757 T1 ATE403757 T1 AT E403757T1 AT 05854599 T AT05854599 T AT 05854599T AT 05854599 T AT05854599 T AT 05854599T AT E403757 T1 ATE403757 T1 AT E403757T1
Authority
AT
Austria
Prior art keywords
nucleic acid
acid analysis
collapsed
sequences
involves
Prior art date
Application number
AT05854599T
Other languages
English (en)
Inventor
Lee Kamentsky
Original Assignee
Helicos Biosciences Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Helicos Biosciences Corp filed Critical Helicos Biosciences Corp
Application granted granted Critical
Publication of ATE403757T1 publication Critical patent/ATE403757T1/de

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
AT05854599T 2004-12-21 2005-12-16 Nukleinsäureanalyse ATE403757T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US11/018,515 US7424371B2 (en) 2004-12-21 2004-12-21 Nucleic acid analysis

Publications (1)

Publication Number Publication Date
ATE403757T1 true ATE403757T1 (de) 2008-08-15

Family

ID=36215748

Family Applications (1)

Application Number Title Priority Date Filing Date
AT05854599T ATE403757T1 (de) 2004-12-21 2005-12-16 Nukleinsäureanalyse

Country Status (6)

Country Link
US (1) US7424371B2 (de)
EP (1) EP1828420B1 (de)
AT (1) ATE403757T1 (de)
CA (1) CA2591954A1 (de)
DE (1) DE602005008770D1 (de)
WO (1) WO2006068997A2 (de)

Families Citing this family (48)

* Cited by examiner, † Cited by third party
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US8370079B2 (en) * 2008-11-20 2013-02-05 Pacific Biosciences Of California, Inc. Algorithms for sequence determination
EP2359289A4 (de) * 2008-11-26 2015-11-11 Illumina Inc Verfahren und systeme zur analyse von sequenzierungsdaten
WO2011137368A2 (en) 2010-04-30 2011-11-03 Life Technologies Corporation Systems and methods for analyzing nucleic acid sequences
US20120035062A1 (en) 2010-06-11 2012-02-09 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
US9268903B2 (en) 2010-07-06 2016-02-23 Life Technologies Corporation Systems and methods for sequence data alignment quality assessment
EP2596127A2 (de) 2010-07-23 2013-05-29 Esoterix Genetic Laboratories, LLC Ermittlung differentiell vertretener fötaler oder mütterlicher genom-regionen und verwendungen davon
EP2633470B1 (de) 2010-10-27 2016-10-26 Life Technologies Corporation Prädiktives modell zur verwendung für sequenzierung nach synthese
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
WO2012118555A1 (en) 2010-12-29 2012-09-07 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
WO2012092515A2 (en) 2010-12-30 2012-07-05 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
EP2658999B1 (de) 2010-12-30 2019-03-13 Life Technologies Corporation Modelle zur analyse von daten aus sequenzierung-mit-synthese-operationen
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
US8594951B2 (en) 2011-02-01 2013-11-26 Life Technologies Corporation Methods and systems for nucleic acid sequence analysis
US9260753B2 (en) 2011-03-24 2016-02-16 President And Fellows Of Harvard College Single cell nucleic acid detection and analysis
WO2012138921A1 (en) 2011-04-08 2012-10-11 Life Technologies Corporation Phase-protecting reagent flow orderings for use in sequencing-by-synthesis
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
PL2893040T3 (pl) 2012-09-04 2019-05-31 Guardant Health Inc Sposoby wykrywania rzadkich mutacji i wariantu liczby kopii
US11913065B2 (en) 2012-09-04 2024-02-27 Guardent Health, Inc. Systems and methods to detect rare mutations and copy number variation
US10876152B2 (en) 2012-09-04 2020-12-29 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
US20160040229A1 (en) 2013-08-16 2016-02-11 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
US20140089328A1 (en) * 2012-09-27 2014-03-27 International Business Machines Corporation Association of data to a biological sequence
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
US10191929B2 (en) * 2013-05-29 2019-01-29 Noblis, Inc. Systems and methods for SNP analysis and genome sequencing
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
JP6532456B2 (ja) 2013-10-04 2019-06-19 ライフ テクノロジーズ コーポレーション 終止化学を用いる配列決定における整相効果（ｐｈａｓｉｎｇ ｅｆｆｅｃｔｓ）をモデル化するための方法及びシステム
CN111534580B (zh) 2013-12-28 2024-06-04 夸登特健康公司 用于检测遗传变异的方法和系统
WO2016060974A1 (en) 2014-10-13 2016-04-21 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
EP4220645A3 (de) 2015-05-14 2023-11-08 Life Technologies Corporation Barcodesequenzen sowie zugehörige systeme und verfahren
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
SG11201805119QA (en) 2015-12-17 2018-07-30 Guardant Health Inc Methods to determine tumor gene copy number by analysis of cell-free dna
JP6765433B2 (ja) 2016-02-12 2020-10-07 リジェネロン・ファーマシューティカルズ・インコーポレイテッドＲｅｇｅｎｅｒｏｎ Ｐｈａｒｍａｃｅｕｔｉｃａｌｓ， Ｉｎｃ． 異常な核型の検出のための方法
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
CN107844684B (zh) * 2016-09-18 2022-02-08 深圳华大智造科技股份有限公司 基因序列比对方法和装置
US9850523B1 (en) 2016-09-30 2017-12-26 Guardant Health, Inc. Methods for multi-resolution analysis of cell-free nucleic acids
EP3792922A1 (de) 2016-09-30 2021-03-17 Guardant Health, Inc. Verfahren zur mehrauflösungsanalyse von zellfreien nukleinsäuren
EP3526706B1 (de) * 2016-10-11 2025-10-22 Genomsys SA Verfahren und vorrichtung zum zugriff auf in zugangseinheiten strukturierte bioinformatikdaten
US11763918B2 (en) 2016-10-11 2023-09-19 Genomsys Sa Method and apparatus for the access to bioinformatics data structured in access units
WO2019084158A1 (en) 2017-10-26 2019-05-02 Ultima Genomics, Inc. METHODS AND SYSTEMS FOR SEQUENCE CALL
EP4567131A3 (de) 2019-01-31 2025-09-03 Guardant Health, Inc. Zusammensetzungen und verfahren zur isolierung von zellfreier dna
US20200395098A1 (en) * 2019-02-28 2020-12-17 Pacific Biosciences Of California, Inc. Alignment using homopolymer-collapsed sequencing reads
WO2020185790A1 (en) 2019-03-10 2020-09-17 Ultima Genomics, Inc. Methods and systems for sequence calling
EP4211691A1 (de) * 2020-09-11 2023-07-19 F. Hoffmann-La Roche AG Auf tiefenlernen basierende techniken zur erzeugung einer konsensussequenz aus mehreren verrauschten sequenzen

Also Published As

Publication number Publication date
CA2591954A1 (en) 2006-06-29
WO2006068997A2 (en) 2006-06-29
US7424371B2 (en) 2008-09-09
EP1828420A2 (de) 2007-09-05
WO2006068997A3 (en) 2006-08-10
DE602005008770D1 (de) 2008-09-18
US20060136144A1 (en) 2006-06-22
EP1828420B1 (de) 2008-08-06

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