ATE403757T1 - Nukleinsäureanalyse - Google Patents

Nukleinsäureanalyse

Info

Publication number
ATE403757T1
ATE403757T1 AT05854599T AT05854599T ATE403757T1 AT E403757 T1 ATE403757 T1 AT E403757T1 AT 05854599 T AT05854599 T AT 05854599T AT 05854599 T AT05854599 T AT 05854599T AT E403757 T1 ATE403757 T1 AT E403757T1
Authority
AT
Austria
Prior art keywords
nucleic acid
acid analysis
collapsed
sequences
involves
Prior art date
Application number
AT05854599T
Other languages
English (en)
Inventor
Lee Kamentsky
Original Assignee
Helicos Biosciences Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Helicos Biosciences Corp filed Critical Helicos Biosciences Corp
Application granted granted Critical
Publication of ATE403757T1 publication Critical patent/ATE403757T1/de

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
AT05854599T 2004-12-21 2005-12-16 Nukleinsäureanalyse ATE403757T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US11/018,515 US7424371B2 (en) 2004-12-21 2004-12-21 Nucleic acid analysis

Publications (1)

Publication Number Publication Date
ATE403757T1 true ATE403757T1 (de) 2008-08-15

Family

ID=36215748

Family Applications (1)

Application Number Title Priority Date Filing Date
AT05854599T ATE403757T1 (de) 2004-12-21 2005-12-16 Nukleinsäureanalyse

Country Status (6)

Country Link
US (1) US7424371B2 (de)
EP (1) EP1828420B1 (de)
AT (1) ATE403757T1 (de)
CA (1) CA2591954A1 (de)
DE (1) DE602005008770D1 (de)
WO (1) WO2006068997A2 (de)

Families Citing this family (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20080281530A1 (en) * 2007-05-10 2008-11-13 The Research Foundation Of State University Of New York Genomic data processing utilizing correlation analysis of nucleotide loci
US9163053B2 (en) * 2007-05-18 2015-10-20 Fluidigm Corporation Nucleotide analogs
AU2009229157B2 (en) 2008-03-28 2015-01-29 Pacific Biosciences Of California, Inc. Compositions and methods for nucleic acid sequencing
WO2010059235A2 (en) * 2008-11-20 2010-05-27 Pacific Biosciences Of California, Inc. Algorithms for sequence determination
CA2744821A1 (en) * 2008-11-26 2010-06-03 Illumina, Inc. Methods and systems for analysis of sequencing data
WO2011137368A2 (en) 2010-04-30 2011-11-03 Life Technologies Corporation Systems and methods for analyzing nucleic acid sequences
AU2011226792A1 (en) 2010-06-11 2012-01-12 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
US9268903B2 (en) 2010-07-06 2016-02-23 Life Technologies Corporation Systems and methods for sequence data alignment quality assessment
EP2596127A2 (de) 2010-07-23 2013-05-29 Esoterix Genetic Laboratories, LLC Ermittlung differentiell vertretener fötaler oder mütterlicher genom-regionen und verwendungen davon
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
EP2633470B1 (de) 2010-10-27 2016-10-26 Life Technologies Corporation Prädiktives modell zur verwendung für sequenzierung nach synthese
WO2012118555A1 (en) 2010-12-29 2012-09-07 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
WO2012092515A2 (en) 2010-12-30 2012-07-05 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
EP2658999B1 (de) 2010-12-30 2019-03-13 Life Technologies Corporation Modelle zur analyse von daten aus sequenzierung-mit-synthese-operationen
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
US8594951B2 (en) 2011-02-01 2013-11-26 Life Technologies Corporation Methods and systems for nucleic acid sequence analysis
WO2012129363A2 (en) 2011-03-24 2012-09-27 President And Fellows Of Harvard College Single cell nucleic acid detection and analysis
CN105861645B (zh) 2011-04-08 2020-02-21 生命科技股份有限公司 用于合成测序中的相保护试剂流排序
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US20160040229A1 (en) 2013-08-16 2016-02-11 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
GB2533006B (en) 2012-09-04 2017-06-07 Guardant Health Inc Systems and methods to detect copy number variation
US11913065B2 (en) 2012-09-04 2024-02-27 Guardent Health, Inc. Systems and methods to detect rare mutations and copy number variation
US10876152B2 (en) 2012-09-04 2020-12-29 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
US20140089328A1 (en) * 2012-09-27 2014-03-27 International Business Machines Corporation Association of data to a biological sequence
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
US10191929B2 (en) * 2013-05-29 2019-01-29 Noblis, Inc. Systems and methods for SNP analysis and genome sequencing
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
WO2015051338A1 (en) 2013-10-04 2015-04-09 Life Technologies Corporation Methods and systems for modeling phasing effects in sequencing using termination chemistry
EP3771745A1 (de) 2013-12-28 2021-02-03 Guardant Health, Inc. Verfahren und systeme für den nachweis genetischer varianten
WO2016060974A1 (en) 2014-10-13 2016-04-21 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
EP4220645A3 (de) 2015-05-14 2023-11-08 Life Technologies Corporation Barcodesequenzen sowie zugehörige systeme und verfahren
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
EP3390668A4 (de) 2015-12-17 2020-04-01 Guardant Health, Inc. Verfahren zur bestimmung der tumorgenkopienzahl durch analyse von zellfreier dna
US12071669B2 (en) 2016-02-12 2024-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for detection of abnormal karyotypes
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
CN107844684B (zh) * 2016-09-18 2022-02-08 深圳华大智造科技股份有限公司 基因序列比对方法和装置
US9850523B1 (en) 2016-09-30 2017-12-26 Guardant Health, Inc. Methods for multi-resolution analysis of cell-free nucleic acids
AU2017336153B2 (en) 2016-09-30 2023-07-13 Guardant Health, Inc. Methods for multi-resolution analysis of cell-free nucleic acids
EP3526706B1 (de) * 2016-10-11 2025-10-22 Genomsys SA Verfahren und vorrichtung zum zugriff auf in zugangseinheiten strukturierte bioinformatikdaten
AU2017342754A1 (en) 2016-10-11 2019-05-02 Genomsys Sa Method and apparatus for the access to bioinformatics data structured in access units
WO2019084158A1 (en) 2017-10-26 2019-05-02 Ultima Genomics, Inc. METHODS AND SYSTEMS FOR SEQUENCE CALL
ES3013495T3 (en) 2019-01-31 2025-04-14 Guardant Health Inc Method for isolating and sequencing cell-free dna
CN113767438B (zh) * 2019-02-28 2025-06-13 加利福尼亚太平洋生物科学股份有限公司 使用均聚物折叠测序读段改进对齐
CN113795887A (zh) 2019-03-10 2021-12-14 阿尔缇玛基因组学公司 用于序列判定的方法和系统
CA3188520A1 (en) * 2020-09-11 2022-03-17 Marghoob Mohiyuddin Deep-learning-based techniques for generating a consensus sequence from multiple noisy sequences

Also Published As

Publication number Publication date
US7424371B2 (en) 2008-09-09
EP1828420B1 (de) 2008-08-06
DE602005008770D1 (de) 2008-09-18
CA2591954A1 (en) 2006-06-29
US20060136144A1 (en) 2006-06-22
WO2006068997A3 (en) 2006-08-10
WO2006068997A2 (en) 2006-06-29
EP1828420A2 (de) 2007-09-05

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