ATE406621T1 - Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten - Google Patents

Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten

Info

Publication number
ATE406621T1
ATE406621T1 AT05700367T AT05700367T ATE406621T1 AT E406621 T1 ATE406621 T1 AT E406621T1 AT 05700367 T AT05700367 T AT 05700367T AT 05700367 T AT05700367 T AT 05700367T AT E406621 T1 ATE406621 T1 AT E406621T1
Authority
AT
Austria
Prior art keywords
sequence
computer
data
dna sequencing
sequencing data
Prior art date
Application number
AT05700367T
Other languages
English (en)
Inventor
Stefan Emler
Original Assignee
Smartgene Gmbh
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Smartgene Gmbh filed Critical Smartgene Gmbh
Application granted granted Critical
Publication of ATE406621T1 publication Critical patent/ATE406621T1/de

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AT05700367T 2005-02-11 2005-02-11 Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten ATE406621T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/CH2005/000079 WO2006084391A1 (en) 2005-02-11 2005-02-11 Computer-implemented method and computer-based system for validating dna sequencing data

Publications (1)

Publication Number Publication Date
ATE406621T1 true ATE406621T1 (de) 2008-09-15

Family

ID=34960293

Family Applications (1)

Application Number Title Priority Date Filing Date
AT05700367T ATE406621T1 (de) 2005-02-11 2005-02-11 Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten

Country Status (9)

Country Link
US (1) US8275557B2 (de)
EP (1) EP1846853B1 (de)
CN (1) CN101137991A (de)
AT (1) ATE406621T1 (de)
AU (1) AU2005327056B2 (de)
CA (1) CA2594633C (de)
DE (1) DE602005009406D1 (de)
ES (1) ES2311958T3 (de)
WO (1) WO2006084391A1 (de)

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2012501658A (ja) * 2008-09-05 2012-01-26 ライフ テクノロジーズ コーポレーション 核酸配列決定の検証、較正、および標準化のための方法およびシステム
WO2011103467A2 (en) * 2010-02-19 2011-08-25 Life Technologies Corporation Methods and systems for nucleic acid sequencing validation, calibration and normalization
CN102959569A (zh) * 2010-06-30 2013-03-06 株式会社尼康 感染扩大防止支援系统、感染扩大防止支援服务器、检查终端、移动终端及程序
WO2012031031A2 (en) 2010-08-31 2012-03-08 Lawrence Ganeshalingam Method and systems for processing polymeric sequence data and related information
BR112013020220B1 (pt) * 2011-02-09 2020-03-17 Natera, Inc. Método para determinar o estado de ploidia de um cromossomo em um feto em gestação
WO2012122555A2 (en) 2011-03-09 2012-09-13 Lawrence Ganeshalingam Biological data networks and methods therefor
WO2013049420A1 (en) * 2011-09-27 2013-04-04 Maltbie Dan System and method for facilitating network-based transactions involving sequence data
CN104520864B (zh) * 2012-06-01 2017-09-05 欧洲分子生物学实验室 Dna中数字信息的高容量存储
WO2013192631A1 (en) 2012-06-22 2013-12-27 Maltbie Dan System and method for secure, high-speed transfer of very large files
CN103559425B (zh) * 2013-11-19 2017-02-15 黑龙江省森林工程与环境研究所 一种高通量基因测序的有效数据分类寻优目标检测系统及检测方法
CN105022935A (zh) * 2014-04-22 2015-11-04 中国科学院青岛生物能源与过程研究所 一种利用dna进行信息存储的编码方法和解码方法
US9674203B2 (en) * 2015-03-16 2017-06-06 International Business Machines Corporation File and bit location authentication
CN105389481B (zh) * 2015-12-22 2018-06-29 武汉菲沙基因信息有限公司 一种三代全长转录组中可变剪切体的检测方法
EP3414693A4 (de) * 2016-02-09 2019-10-30 TOMA Biosciences, Inc. Systeme und verfahren zur analyse von nukleinsäuren
CN105975811B (zh) * 2016-05-09 2019-03-15 管仁初 一种智能比对的基因序列分析装置
WO2018068014A1 (en) * 2016-10-07 2018-04-12 Illumina, Inc. System and method for secondary analysis of nucleotide sequencing data
WO2019037117A1 (zh) * 2017-08-25 2019-02-28 深圳华大基因研究院 编码/解码方法、装置和数据处理装置
AU2018353924A1 (en) 2017-12-29 2019-07-18 Clear Labs, Inc. Automated priming and library loading device
WO2019191319A1 (en) * 2018-03-30 2019-10-03 Juno Diagnostics, Inc. Deep learning-based methods, devices, and systems for prenatal testing
SE541799C2 (en) 2018-04-11 2019-12-17 David Yudovich Determination of frequency distribution of nucleotide sequence variants
CN114121153A (zh) * 2021-11-23 2022-03-01 广州金域医学检验中心有限公司 基因突变位点检测方法、装置、电子设备及存储介质

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050221354A1 (en) * 2004-02-18 2005-10-06 Wyeth Nucleic acid arrays for monitoring expression profiles of drug target genes

Also Published As

Publication number Publication date
WO2006084391A1 (en) 2006-08-17
EP1846853A1 (de) 2007-10-24
CA2594633C (en) 2014-02-25
US8275557B2 (en) 2012-09-25
US20080120079A1 (en) 2008-05-22
CA2594633A1 (en) 2006-08-17
CN101137991A (zh) 2008-03-05
DE602005009406D1 (de) 2008-10-09
EP1846853B1 (de) 2008-08-27
AU2005327056B2 (en) 2010-09-16
AU2005327056A1 (en) 2006-08-17
AU2005327056A2 (en) 2006-08-17
ES2311958T3 (es) 2009-02-16

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