ATE437242T1 - Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen - Google Patents
Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismenInfo
- Publication number
- ATE437242T1 ATE437242T1 AT08151292T AT08151292T ATE437242T1 AT E437242 T1 ATE437242 T1 AT E437242T1 AT 08151292 T AT08151292 T AT 08151292T AT 08151292 T AT08151292 T AT 08151292T AT E437242 T1 ATE437242 T1 AT E437242T1
- Authority
- AT
- Austria
- Prior art keywords
- probes
- polynucleotide
- collection
- nucleic acids
- based method
- Prior art date
Links
- 238000000034 method Methods 0.000 title abstract 3
- 102000040430 polynucleotide Human genes 0.000 title abstract 3
- 108091033319 polynucleotide Proteins 0.000 title abstract 3
- 239000002157 polynucleotide Substances 0.000 title abstract 3
- 244000005700 microbiome Species 0.000 title abstract 2
- 239000000523 sample Substances 0.000 abstract 4
- 239000012472 biological sample Substances 0.000 abstract 2
- 102000039446 nucleic acids Human genes 0.000 abstract 2
- 108020004707 nucleic acids Proteins 0.000 abstract 2
- 150000007523 nucleic acids Chemical class 0.000 abstract 2
- 239000011159 matrix material Substances 0.000 abstract 1
- 230000000813 microbial effect Effects 0.000 abstract 1
- 210000003705 ribosome Anatomy 0.000 abstract 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US13241199P | 1999-05-03 | 1999-05-03 | |
| US15014999P | 1999-08-20 | 1999-08-20 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE437242T1 true ATE437242T1 (de) | 2009-08-15 |
Family
ID=26830335
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT00928890T ATE386139T1 (de) | 1999-05-03 | 2000-05-03 | Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen |
| AT08151292T ATE437242T1 (de) | 1999-05-03 | 2000-05-03 | Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen |
Family Applications Before (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT00928890T ATE386139T1 (de) | 1999-05-03 | 2000-05-03 | Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen |
Country Status (7)
| Country | Link |
|---|---|
| EP (1) | EP1177318B1 (de) |
| JP (1) | JP2002542808A (de) |
| AT (2) | ATE386139T1 (de) |
| AU (2) | AU778230B2 (de) |
| CA (1) | CA2370255C (de) |
| DE (2) | DE60042623D1 (de) |
| WO (1) | WO2000066789A2 (de) |
Families Citing this family (48)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2370123C (en) | 1999-05-03 | 2010-09-14 | Gen-Probe Incorporated | Polynucleotide probes for detection and quantitation of actinomycetes |
| ATE335847T1 (de) * | 1999-05-03 | 2006-09-15 | Gen Probe Inc | Poynukleotidsonden zur exklusiven detektion und quantifizierung von staphylococcus |
| US6821770B1 (en) | 1999-05-03 | 2004-11-23 | Gen-Probe Incorporated | Polynucleotide matrix-based method of identifying microorganisms |
| US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
| US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
| US20040121309A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
| US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
| WO2004060278A2 (en) | 2002-12-06 | 2004-07-22 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of pathogens in humans and animals |
| US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
| US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
| JP2006507798A (ja) * | 2002-05-17 | 2006-03-09 | アプレラ コーポレイション | Ｌｉｓｔｅｒｉａの決定に関するＰＮＡプローブ、プローブセット、方法およびキット |
| JP2007014351A (ja) * | 2003-04-02 | 2007-01-25 | Canon Inc | 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法 |
| JP2004313181A (ja) * | 2003-04-02 | 2004-11-11 | Canon Inc | 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法 |
| US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
| US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US8288523B2 (en) | 2003-09-11 | 2012-10-16 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
| WO2005027731A2 (en) * | 2003-09-19 | 2005-03-31 | University Of Rochester | Biagnostic system for otolaryngologic pathogens and use thereof |
| US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
| EP2458619B1 (de) | 2004-05-24 | 2017-08-02 | Ibis Biosciences, Inc. | Massenspektrometrie mit selektivem Ionfilter durch digitale Schwelle |
| US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
| US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
| WO2006135400A2 (en) | 2004-08-24 | 2006-12-21 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of recombinant organisms |
| AU2005335216A1 (en) * | 2004-10-05 | 2007-02-15 | Wyeth | Probe arrays for detecting multiple strains of different species |
| US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
| US8182992B2 (en) | 2005-03-03 | 2012-05-22 | Ibis Biosciences, Inc. | Compositions for use in identification of adventitious viruses |
| EP1904655A2 (de) | 2005-07-21 | 2008-04-02 | Isis Pharmaceuticals, Inc. | Verfahren zur raschen identifizierung und quantifizierung von nukleinsäurevarianten |
| CA2651946A1 (en) * | 2006-05-12 | 2007-11-22 | Gen-Probe Incorporated | Compositions and methods to detect enterococci nucleic acid |
| EP2064332B1 (de) | 2006-09-14 | 2012-07-18 | Ibis Biosciences, Inc. | Gezielte gesamtgenomamplifizierung zur identifizierung von krankheitserregern |
| JP5680304B2 (ja) | 2007-02-23 | 2015-03-04 | アイビス バイオサイエンシズ インコーポレイティッド | 迅速な法医学的ｄｎａ分析法 |
| EP1978111B1 (de) | 2007-04-02 | 2013-03-27 | Gen-Probe Incorporated | Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa |
| US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
| EP1997905A1 (de) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Amplifikation von Nukleinsäure |
| EP2235214B1 (de) | 2007-12-26 | 2014-07-09 | Gen Probe Inc | Zusammensetzungen und verfahren für den nachweis von candida albicans-nukleinsäure |
| WO2010033599A2 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Mixing cartridges, mixing stations, and related kits, systems, and methods |
| WO2010033625A1 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Microplate handling systems and related computer program products and methods |
| EP2347254A2 (de) | 2008-09-16 | 2011-07-27 | Ibis Biosciences, Inc. | Probenverarbeitungseinheiten, -systeme und damit verbundene verfahren |
| EP2396803A4 (de) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionisationssondenanordnungen |
| US9447461B2 (en) | 2009-03-24 | 2016-09-20 | California Institute Of Technology | Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes |
| US9415392B2 (en) | 2009-03-24 | 2016-08-16 | The University Of Chicago | Slip chip device and methods |
| US10196700B2 (en) | 2009-03-24 | 2019-02-05 | University Of Chicago | Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes |
| US9464319B2 (en) | 2009-03-24 | 2016-10-11 | California Institute Of Technology | Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes |
| US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
| EP2454000A4 (de) | 2009-07-17 | 2016-08-10 | Ibis Biosciences Inc | Systeme zur identifizierung von biowirkstoffen |
| US9890408B2 (en) | 2009-10-15 | 2018-02-13 | Ibis Biosciences, Inc. | Multiple displacement amplification |
| WO2018017880A1 (en) * | 2016-07-20 | 2018-01-25 | Management Revenue Group P.R., Llc | Kits and methods for detecting and treating gastrointestinal disorders and infections |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1988003957A1 (en) * | 1986-11-24 | 1988-06-02 | Gen-Probe Incorporated | Nucleic acid probes for detection and/or quantitation of non-viral organisms |
| WO1988006189A1 (en) * | 1987-02-12 | 1988-08-25 | Sdi Diagnostics, Inc. | Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids |
| CA2031499A1 (en) * | 1989-05-31 | 1990-12-01 | David J. Lane | Universal eubacteria nucleic acid probes and methods |
| CA2025181A1 (en) * | 1989-10-12 | 1991-04-13 | William G. Weisburg | Nucleic acid probes and methods for detecting fungi |
| US5593836A (en) * | 1993-05-14 | 1997-01-14 | Niemiec; John T. | Primers and probes for detecting Pneumocystis carinii |
| JP3124036B2 (ja) * | 1995-01-19 | 2001-01-15 | ジェン−プローブ・インコーポレーテッド | ライム病関連ボレリアに対する核酸増幅オリゴヌクレオチドおよびプローブ |
| US6228575B1 (en) * | 1996-02-08 | 2001-05-08 | Affymetrix, Inc. | Chip-based species identification and phenotypic characterization of microorganisms |
| EP0951569A2 (de) * | 1996-12-23 | 1999-10-27 | University Of Chicago | Kundengerichtete oligonukleotidchips als vielfaeltige biosensoren |
-
2000
- 2000-05-03 WO PCT/US2000/012421 patent/WO2000066789A2/en not_active Ceased
- 2000-05-03 DE DE60042623T patent/DE60042623D1/de not_active Expired - Lifetime
- 2000-05-03 AT AT00928890T patent/ATE386139T1/de not_active IP Right Cessation
- 2000-05-03 EP EP00928890A patent/EP1177318B1/de not_active Expired - Lifetime
- 2000-05-03 JP JP2000615411A patent/JP2002542808A/ja not_active Ceased
- 2000-05-03 CA CA2370255A patent/CA2370255C/en not_active Expired - Fee Related
- 2000-05-03 AU AU47056/00A patent/AU778230B2/en not_active Ceased
- 2000-05-03 AT AT08151292T patent/ATE437242T1/de not_active IP Right Cessation
- 2000-05-03 DE DE60038015T patent/DE60038015T2/de not_active Expired - Lifetime
-
2005
- 2005-02-25 AU AU2005200846A patent/AU2005200846B2/en not_active Ceased
Also Published As
| Publication number | Publication date |
|---|---|
| DE60042623D1 (de) | 2009-09-03 |
| EP1177318A2 (de) | 2002-02-06 |
| JP2002542808A (ja) | 2002-12-17 |
| AU2005200846A1 (en) | 2005-03-24 |
| CA2370255A1 (en) | 2000-11-09 |
| WO2000066789A2 (en) | 2000-11-09 |
| EP1177318B1 (de) | 2008-02-13 |
| CA2370255C (en) | 2011-03-29 |
| ATE386139T1 (de) | 2008-03-15 |
| DE60038015T2 (de) | 2009-02-12 |
| AU778230B2 (en) | 2004-11-25 |
| AU4705600A (en) | 2000-11-17 |
| AU2005200846B2 (en) | 2007-08-16 |
| DE60038015D1 (de) | 2008-03-27 |
| WO2000066789A3 (en) | 2001-05-03 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| RER | Ceased as to paragraph 5 lit. 3 law introducing patent treaties |