ATE469982T1 - Bestimmung des genotyps eines amplifikationsproduktes an mehreren allelen stellen - Google Patents

Bestimmung des genotyps eines amplifikationsproduktes an mehreren allelen stellen

Info

Publication number
ATE469982T1
ATE469982T1 AT99903026T AT99903026T ATE469982T1 AT E469982 T1 ATE469982 T1 AT E469982T1 AT 99903026 T AT99903026 T AT 99903026T AT 99903026 T AT99903026 T AT 99903026T AT E469982 T1 ATE469982 T1 AT E469982T1
Authority
AT
Austria
Prior art keywords
fluorescer
fluorescence
allelic
target sequence
sites
Prior art date
Application number
AT99903026T
Other languages
English (en)
Inventor
Kenneth Livak
Federico Goodsaid
Original Assignee
Life Technologies Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Life Technologies Corp filed Critical Life Technologies Corp
Application granted granted Critical
Publication of ATE469982T1 publication Critical patent/ATE469982T1/de

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6858Allele-specific amplification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • C12Q1/6818Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Amplifiers (AREA)
  • Analysing Materials By The Use Of Radiation (AREA)
AT99903026T 1998-02-04 1999-01-08 Bestimmung des genotyps eines amplifikationsproduktes an mehreren allelen stellen ATE469982T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US1859598A 1998-02-04 1998-02-04
PCT/US1999/000499 WO1999040226A2 (en) 1998-02-04 1999-01-08 Determination of a genotype of an amplification product at multiple allelic sites

Publications (1)

Publication Number Publication Date
ATE469982T1 true ATE469982T1 (de) 2010-06-15

Family

ID=21788757

Family Applications (1)

Application Number Title Priority Date Filing Date
AT99903026T ATE469982T1 (de) 1998-02-04 1999-01-08 Bestimmung des genotyps eines amplifikationsproduktes an mehreren allelen stellen

Country Status (8)

Country Link
US (5) US6154707A (de)
EP (1) EP1053348B1 (de)
JP (1) JP4388694B2 (de)
AT (1) ATE469982T1 (de)
AU (1) AU758463B2 (de)
CA (1) CA2318880C (de)
DE (1) DE69942444D1 (de)
WO (1) WO1999040226A2 (de)

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Also Published As

Publication number Publication date
CA2318880C (en) 2010-07-27
EP1053348A2 (de) 2000-11-22
EP1053348B1 (de) 2010-06-02
US20040053302A1 (en) 2004-03-18
US7132239B2 (en) 2006-11-07
US6154707A (en) 2000-11-28
JP2002502615A (ja) 2002-01-29
DE69942444D1 (de) 2010-07-15
WO1999040226A2 (en) 1999-08-12
US20080187913A1 (en) 2008-08-07
US6884583B2 (en) 2005-04-26
AU758463B2 (en) 2003-03-20
AU2314499A (en) 1999-08-23
JP4388694B2 (ja) 2009-12-24
WO1999040226A3 (en) 2000-08-17
US20120053069A1 (en) 2012-03-01
US20020164630A1 (en) 2002-11-07
CA2318880A1 (en) 1999-08-12

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