ATE486139T1 - Verfahren und vorrichtung zur nukleinsäuresequenzierung unter verwendung eines planaren wellenleiters - Google Patents
Verfahren und vorrichtung zur nukleinsäuresequenzierung unter verwendung eines planaren wellenleitersInfo
- Publication number
- ATE486139T1 ATE486139T1 AT06726800T AT06726800T ATE486139T1 AT E486139 T1 ATE486139 T1 AT E486139T1 AT 06726800 T AT06726800 T AT 06726800T AT 06726800 T AT06726800 T AT 06726800T AT E486139 T1 ATE486139 T1 AT E486139T1
- Authority
- AT
- Austria
- Prior art keywords
- nucleic acid
- planar waveguide
- acid sequencing
- sequencing
- methods
- Prior art date
Links
- 238000000034 method Methods 0.000 title abstract 3
- 102000039446 nucleic acids Human genes 0.000 title abstract 3
- 108020004707 nucleic acids Proteins 0.000 title abstract 3
- 150000007523 nucleic acids Chemical class 0.000 title abstract 3
- 238000012163 sequencing technique Methods 0.000 title 1
- 238000006243 chemical reaction Methods 0.000 abstract 1
- 238000003384 imaging method Methods 0.000 abstract 1
- 239000002773 nucleotide Substances 0.000 abstract 1
- 125000003729 nucleotide group Chemical group 0.000 abstract 1
- 102000040430 polynucleotide Human genes 0.000 abstract 1
- 108091033319 polynucleotide Proteins 0.000 abstract 1
- 239000002157 polynucleotide Substances 0.000 abstract 1
- 238000003786 synthesis reaction Methods 0.000 abstract 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GBGB0507835.7A GB0507835D0 (en) | 2005-04-18 | 2005-04-18 | Method and device for nucleic acid sequencing using a planar wave guide |
| PCT/GB2006/001405 WO2006111729A1 (en) | 2005-04-18 | 2006-04-18 | Method and device for nucleic acid sequencing using a planar wave guide |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE486139T1 true ATE486139T1 (de) | 2010-11-15 |
Family
ID=34630886
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT06726800T ATE486139T1 (de) | 2005-04-18 | 2006-04-18 | Verfahren und vorrichtung zur nukleinsäuresequenzierung unter verwendung eines planaren wellenleiters |
Country Status (6)
| Country | Link |
|---|---|
| US (1) | US20090247414A1 (de) |
| EP (1) | EP1871902B1 (de) |
| AT (1) | ATE486139T1 (de) |
| DE (1) | DE602006017817D1 (de) |
| GB (1) | GB0507835D0 (de) |
| WO (1) | WO2006111729A1 (de) |
Families Citing this family (71)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2008028160A2 (en) | 2006-09-01 | 2008-03-06 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
| US8207509B2 (en) | 2006-09-01 | 2012-06-26 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
| EP2331934B1 (de) | 2008-09-16 | 2020-01-01 | Pacific Biosciences of California, Inc. | Analysegerät mit Nullmoden-Wellenleiter Substrat |
| US8994946B2 (en) | 2010-02-19 | 2015-03-31 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
| EP3460458B1 (de) | 2010-02-19 | 2021-08-11 | Pacific Biosciences of California, Inc. | Verfahren zur nukleinsäuresequenzierung |
| AU2012272161B2 (en) | 2011-06-21 | 2015-12-24 | Illumina Cambridge Limited | Methods and systems for data analysis |
| CA2859660C (en) | 2011-09-23 | 2021-02-09 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
| WO2013060482A1 (de) * | 2011-10-28 | 2013-05-02 | Torsten Matthias | Vorrichtung und verfahren zum nachweis von in biologischen oder chemischen proben vorliegenden substanzen |
| US20130261984A1 (en) | 2012-03-30 | 2013-10-03 | Illumina, Inc. | Methods and systems for determining fetal chromosomal abnormalities |
| US9372308B1 (en) | 2012-06-17 | 2016-06-21 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
| US9977861B2 (en) * | 2012-07-18 | 2018-05-22 | Illumina Cambridge Limited | Methods and systems for determining haplotypes and phasing of haplotypes |
| WO2014031157A1 (en) | 2012-08-20 | 2014-02-27 | Illumina, Inc. | Method and system for fluorescence lifetime based sequencing |
| EP2936222B1 (de) | 2012-12-18 | 2019-07-03 | Pacific Biosciences Of California, Inc. | Eine optische analysevorrichtung |
| US9624540B2 (en) | 2013-02-22 | 2017-04-18 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
| US9896686B2 (en) | 2014-01-09 | 2018-02-20 | AgBiome, Inc. | High throughput discovery of new genes from complex mixtures of environmental microbes |
| TWI692633B (zh) | 2014-08-27 | 2020-05-01 | 美商加州太平洋生物科學公司 | 整合式分析裝置之陣列 |
| US10302972B2 (en) | 2015-01-23 | 2019-05-28 | Pacific Biosciences Of California, Inc. | Waveguide transmission |
| EP3271762B1 (de) | 2015-03-16 | 2023-01-04 | Pacific Biosciences of California, Inc. | Analysesystem umfassend integrierte vorrichtungen und systeme zur optischen freiraumkopplung |
| EP3292220B1 (de) | 2015-05-07 | 2022-07-13 | Pacific Biosciences of California, Inc. | Multiprozessor-pipeline-architektur |
| EP4425153A3 (de) | 2015-06-12 | 2024-11-20 | Pacific Biosciences Of California, Inc. | Integrierte zielwellenleitervorrichtungen und systeme zur optischen kopplung |
| EP3472358B1 (de) | 2016-06-16 | 2021-08-18 | The Johns Hopkins University | Verfahren und system für epigenetische analyse |
| WO2018187013A1 (en) | 2017-04-04 | 2018-10-11 | Omniome, Inc. | Fluidic apparatus and methods useful for chemical and biological reactions |
| WO2019035897A1 (en) | 2017-08-15 | 2019-02-21 | Omniome, Inc. | SCANNING APPARATUS AND METHODS USEFUL FOR DETECTION OF CHEMICAL OR BIOLOGICAL ANALYTES |
| CN111566261B (zh) | 2017-08-18 | 2025-03-25 | 诺迪勒思附属公司 | 选择结合试剂的方法 |
| EP3727674A4 (de) * | 2017-12-21 | 2021-10-13 | Illumina Inc. | Flusszellen mit hydrogelbeschichtung |
| NZ760171A (en) | 2018-03-29 | 2023-05-26 | Illumina Inc | Illumination for fluorescence imaging using objective lens |
| US20210172008A1 (en) | 2018-04-04 | 2021-06-10 | Lifeedit, Inc. | Methods and compositions to identify novel crispr systems |
| WO2019203986A1 (en) | 2018-04-19 | 2019-10-24 | Omniome, Inc. | Improving accuracy of base calls in nucleic acid sequencing methods |
| US11993865B2 (en) | 2018-11-20 | 2024-05-28 | Nautilus Subsidiary, Inc. | Selection of affinity reagents |
| EP3891304A1 (de) | 2018-12-04 | 2021-10-13 | Omniome, Inc. | Mischphasenfluide für nukleinsäuresequenzierung und andere analytische tests |
| EP3899032A2 (de) | 2018-12-20 | 2021-10-27 | Omniome, Inc. | Temperaturkontrolle zur analyse von nukleinsäuren und anderen analyten |
| WO2020167574A1 (en) | 2019-02-14 | 2020-08-20 | Omniome, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
| US11680950B2 (en) | 2019-02-20 | 2023-06-20 | Pacific Biosciences Of California, Inc. | Scanning apparatus and methods for detecting chemical and biological analytes |
| CA3135206A1 (en) | 2019-04-29 | 2020-11-05 | Pierre Indermuhle | Methods and systems for integrated on-chip single-molecule detection |
| WO2020240453A1 (en) * | 2019-05-28 | 2020-12-03 | Illumina, Inc. | Manufacturing a flowcell with a planar waveguide |
| NL2023516B1 (en) * | 2019-05-28 | 2020-12-08 | Illumina Inc | Manufacturing a flowcell with a planar waveguide |
| US11644406B2 (en) | 2019-06-11 | 2023-05-09 | Pacific Biosciences Of California, Inc. | Calibrated focus sensing |
| SG11202012996UA (en) | 2019-06-28 | 2021-02-25 | Illumina Cambridge Ltd | Flowcells with linear waveguides |
| US10656368B1 (en) | 2019-07-24 | 2020-05-19 | Omniome, Inc. | Method and system for biological imaging using a wide field objective lens |
| CN114728996B (zh) | 2019-09-10 | 2022-11-29 | 加利福尼亚太平洋生物科学股份有限公司 | 核苷酸的可逆修饰 |
| EP4055155A1 (de) | 2019-11-08 | 2022-09-14 | Pacific Biosciences of California, Inc. | Modifizierte polymerasen zur verbesserten sequenzierung durch bindung |
| DE202019106694U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
| EP4100161B1 (de) | 2020-02-04 | 2024-07-10 | Pacific Biosciences of California, Inc. | Durchflusszellen und verfahren zu deren verwendung |
| US12535420B2 (en) | 2020-02-18 | 2026-01-27 | Pacific Biosciences Of California, Inc. | Highly multiplexed nucleic acid sequencing systems |
| WO2021252800A1 (en) | 2020-06-11 | 2021-12-16 | Nautilus Biotechnology, Inc. | Methods and systems for computational decoding of biological, chemical, and physical entities |
| CA3196800A1 (en) * | 2020-10-30 | 2022-05-05 | Element Biosciences, Inc. | Reagents for massively parallel nucleic acid sequencing |
| AU2021378290B2 (en) | 2020-11-11 | 2025-10-30 | Nautilus Subsidiary, Inc. | Affinity reagents having enhanced binding and detection characteristics |
| WO2022159663A1 (en) | 2021-01-21 | 2022-07-28 | Nautilus Biotechnology, Inc. | Systems and methods for biomolecule preparation |
| IL305336B2 (en) | 2021-03-11 | 2025-09-01 | Nautilus Subsidiary Inc | Systems and methods for preserving biomolecules |
| KR20240006033A (ko) | 2021-05-04 | 2024-01-12 | 퍼시픽 바이오사이언스 오브 캘리포니아, 인크. | 축소된 규모의 단위 셀을 갖는 통합 분석 장치의 어레이 |
| US11427855B1 (en) | 2021-06-17 | 2022-08-30 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| US11859241B2 (en) | 2021-06-17 | 2024-01-02 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| US20220403351A1 (en) | 2021-06-18 | 2022-12-22 | Element Biosciences, Inc. | Engineered polymerases |
| CA3227872A1 (en) | 2021-09-09 | 2023-03-16 | James Henry JOLY | Characterization and localization of protein modifications |
| AU2022352593B2 (en) | 2021-09-22 | 2026-03-26 | Nautilus Subsidiary, Inc. | Methods and systems for determining polypeptide interactions |
| WO2023081728A1 (en) | 2021-11-03 | 2023-05-11 | Nautilus Biotechnology, Inc. | Systems and methods for surface structuring |
| US11788075B2 (en) | 2022-02-18 | 2023-10-17 | Element Biosciences, Inc. | Engineered polymerases with reduced sequence-specific errors |
| US12092578B2 (en) | 2022-03-29 | 2024-09-17 | Nautilus Subsidiary, Inc. | Integrated arrays for single-analyte processes |
| US20250376716A1 (en) | 2022-06-21 | 2025-12-11 | Nautilus Subsidiary, Inc. | Method for detecting analytes at sites of optically non-resolvable distances |
| WO2024015962A1 (en) | 2022-07-15 | 2024-01-18 | Pacific Biosciences Of California, Inc. | Blocked asymmetric hairpin adaptors |
| EP4573213A1 (de) | 2022-08-15 | 2025-06-25 | Element Biosciences, Inc. | Ortsaufgelöste oberflächenerfassung von nukleinsäuren |
| WO2024073599A1 (en) | 2022-09-29 | 2024-04-04 | Nautilus Subsidiary, Inc. | Preparation of array surfaces for single-analyte processes |
| US20240192202A1 (en) | 2022-12-09 | 2024-06-13 | Nautilus Subsidiary, Inc. | Fluidic media for single-analtye arrays |
| US20240201182A1 (en) | 2022-12-15 | 2024-06-20 | Nautilus Subsidiary, Inc. | Inhibition of photon phenomena on single molecule arrays |
| WO2024243237A1 (en) | 2023-05-24 | 2024-11-28 | Nautilus Subsidiary, Inc. | Systems and methods for machine vision |
| WO2025010160A1 (en) | 2023-07-06 | 2025-01-09 | Pacific Biosciences Of California, Inc. | Methods and compositions for stabilizing concatemers |
| US20250066841A1 (en) | 2023-08-24 | 2025-02-27 | Nautilus Subsidiary, Inc. | Compositions and methods for detecting binding interactions under equilibrium or non-equilibrium conditions |
| US20250189519A1 (en) | 2023-12-11 | 2025-06-12 | Nautilus Subsidiary, Inc. | Methods and compositions of particle-based arrays |
| US20250205706A1 (en) | 2023-12-20 | 2025-06-26 | Nautilus Subsidiary, Inc. | Fluidic devices for single-analyte assays |
| US20250298016A1 (en) | 2024-03-22 | 2025-09-25 | Nautilus Subsidiary, Inc. | Plasmonic particle systems for single-analyte assays |
| US20250305034A1 (en) | 2024-04-01 | 2025-10-02 | Nautilus Subsidiary, Inc. | Nanostructures for modulation of analyte conformation |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4582809A (en) * | 1982-06-14 | 1986-04-15 | Myron J. Block | Apparatus including optical fiber for fluorescence immunoassay |
| EP0341928A1 (de) * | 1988-05-10 | 1989-11-15 | AMERSHAM INTERNATIONAL plc | Oberflächen-Resonanzplasmawellen-Sensoren |
| US5547839A (en) * | 1989-06-07 | 1996-08-20 | Affymax Technologies N.V. | Sequencing of surface immobilized polymers utilizing microflourescence detection |
| US5302509A (en) * | 1989-08-14 | 1994-04-12 | Beckman Instruments, Inc. | Method for sequencing polynucleotides |
| US5516703A (en) * | 1993-08-20 | 1996-05-14 | The University Of Utah | Coating of hydrophobic surfaces to render them protein resistant while permitting covalent attachment of specific ligands |
| US5512492A (en) * | 1993-05-18 | 1996-04-30 | University Of Utah Research Foundation | Waveguide immunosensor with coating chemistry providing enhanced sensitivity |
| MXPA96005828A (es) * | 1994-05-27 | 2005-07-15 | Novartis Ag Tambien Denominada | Proceso para detectar luminescencia excitada evanescentemente. |
| US5763594A (en) * | 1994-09-02 | 1998-06-09 | Andrew C. Hiatt | 3' protected nucleotides for enzyme catalyzed template-independent creation of phosphodiester bonds |
| US5796909A (en) * | 1996-02-14 | 1998-08-18 | Islam; Mohammed N. | All-fiber, high-sensitivity, near-field optical microscopy instrument employing guided wave light collector and specimen support |
| GB9805935D0 (en) * | 1998-03-19 | 1998-05-13 | Ciba Geigy Ag | Organic compounds |
| US6787308B2 (en) * | 1998-07-30 | 2004-09-07 | Solexa Ltd. | Arrayed biomolecules and their use in sequencing |
| AU3508600A (en) * | 1999-02-26 | 2000-09-14 | Orchid Biosciences, Inc. | Microstructures for use in biological assays and reactions |
| AU2001262178A1 (en) * | 2000-04-14 | 2001-10-30 | Zeptosens Ag | Grid-waveguide structure for reinforcing an excitation field and use thereof |
| AU2001296645A1 (en) * | 2000-10-06 | 2002-04-15 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding dna and rna |
| UA75375C2 (en) * | 2000-10-12 | 2006-04-17 | Boehringer Ingelheim Pharma | Method for producing powdery preparations for inhaling |
| US7057026B2 (en) * | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| WO2003062791A2 (en) * | 2002-01-18 | 2003-07-31 | University Of Utah Research Foundation | Detection of single nucleotide polymorphisms using planar waveguides |
| WO2004018497A2 (en) * | 2002-08-23 | 2004-03-04 | Solexa Limited | Modified nucleotides for polynucleotide sequencing |
| US7414116B2 (en) * | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
| US20050170367A1 (en) * | 2003-06-10 | 2005-08-04 | Quake Stephen R. | Fluorescently labeled nucleoside triphosphates and analogs thereof for sequencing nucleic acids |
| US20050153320A1 (en) * | 2003-11-06 | 2005-07-14 | Herron James N. | Single base extension |
| WO2005052644A2 (en) * | 2003-11-21 | 2005-06-09 | Perkinelmer Las, Inc. | Optical device integrated with well |
| GB0517097D0 (en) * | 2005-08-19 | 2005-09-28 | Solexa Ltd | Modified nucleosides and nucleotides and uses thereof |
-
2005
- 2005-04-18 GB GBGB0507835.7A patent/GB0507835D0/en not_active Ceased
-
2006
- 2006-04-18 EP EP06726800A patent/EP1871902B1/de not_active Expired - Lifetime
- 2006-04-18 DE DE602006017817T patent/DE602006017817D1/de not_active Expired - Lifetime
- 2006-04-18 WO PCT/GB2006/001405 patent/WO2006111729A1/en not_active Ceased
- 2006-04-18 AT AT06726800T patent/ATE486139T1/de not_active IP Right Cessation
- 2006-04-18 US US11/918,609 patent/US20090247414A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| DE602006017817D1 (de) | 2010-12-09 |
| US20090247414A1 (en) | 2009-10-01 |
| WO2006111729A1 (en) | 2006-10-26 |
| EP1871902A1 (de) | 2008-01-02 |
| GB0507835D0 (en) | 2005-05-25 |
| EP1871902B1 (de) | 2010-10-27 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| RER | Ceased as to paragraph 5 lit. 3 law introducing patent treaties |